Psyllid ID: psy8786
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | 2.2.26 [Sep-21-2011] | |||||||
| Q8K354 | 277 | Carbonyl reductase [NADPH | yes | N/A | 0.400 | 0.700 | 0.348 | 2e-28 | |
| Q28960 | 289 | Carbonyl reductase [NADPH | no | N/A | 0.376 | 0.629 | 0.334 | 9e-27 | |
| P48758 | 277 | Carbonyl reductase [NADPH | no | N/A | 0.380 | 0.664 | 0.331 | 3e-26 | |
| P47844 | 277 | Carbonyl reductase [NADPH | no | N/A | 0.384 | 0.671 | 0.330 | 1e-25 | |
| Q3SZD7 | 277 | Carbonyl reductase [NADPH | no | N/A | 0.359 | 0.628 | 0.355 | 2e-25 | |
| Q8MI29 | 277 | Carbonyl reductase [NADPH | N/A | N/A | 0.378 | 0.660 | 0.336 | 7e-25 | |
| P16152 | 277 | Carbonyl reductase [NADPH | yes | N/A | 0.373 | 0.653 | 0.331 | 3e-24 | |
| Q5RCU5 | 277 | Carbonyl reductase [NADPH | yes | N/A | 0.373 | 0.653 | 0.331 | 4e-24 | |
| P47727 | 277 | Carbonyl reductase [NADPH | no | N/A | 0.376 | 0.657 | 0.341 | 7e-24 | |
| O75828 | 277 | Carbonyl reductase [NADPH | no | N/A | 0.373 | 0.653 | 0.318 | 6e-22 |
| >sp|Q8K354|CBR3_MOUSE Carbonyl reductase [NADPH] 3 OS=Mus musculus GN=Cbr3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 120/247 (48%), Gaps = 53/247 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-------------D 233
RVA+VTGANKG+GF I + LC +F G + LTARD+ +G AVQ L+ D
Sbjct: 6 RVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDID 65
Query: 234 RASTV-------------------------------PFAIQAEKTILTNYLGLVRTCVFL 262
++ PF IQAE T+ TN+ C L
Sbjct: 66 DPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRNVCTEL 125
Query: 263 FPLLRRHARVVNLSSSAGHLSQITN----LELKKRLRQLREP--VSLRSLNITKEHPRAH 316
P+++ H RVVN+SS G L + N L+ K R L E V L + H
Sbjct: 126 LPIMKPHGRVVNISSLQG-LKALENCREDLQEKFRCDTLTEVDLVDLMKKFVEDTKNEVH 184
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVN 375
+GWPDSAY VSK+GV +LTRI ++ D E D++ +NA PG+V T+M+ G+
Sbjct: 185 EREGWPDSAYGVSKLGVTVLTRILARQLD-EKRKADRILLNACCPGWVKTDMARDQGSRT 243
Query: 376 IFDDSST 382
+ + + T
Sbjct: 244 VEEGAET 250
|
Has low NADPH-dependent oxidoreductase activity towards 4-benzoylpyridine and menadione (in vitro). Mus musculus (taxid: 10090) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8EC: 4 |
| >sp|Q28960|CBR1_PIG Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 51/233 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----------- 235
RVA+VTGANKG+GF IV+ LC QF G + LTARD +G AV+ L+
Sbjct: 6 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 65
Query: 236 ---------------------------------STVPFAIQAEKTILTNYLGLVRTCVFL 262
+ PF IQAE T+ TN++G C L
Sbjct: 66 DLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCTEL 125
Query: 263 FPLLRRHARVVNLSSSAG--HLSQITNLELKKRLRQL----REPVSLRSLNITKEHPRAH 316
PL++ RVVN+SS+ G L++ + EL+++ + E V L + + H
Sbjct: 126 LPLIKPQGRVVNVSSTEGVRALNECSP-ELQQKFKSETITEEELVGLMNKFVEDTKNGVH 184
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+GW DS Y V+KIGV++L+RIY +K + ++NA PG+V T+M
Sbjct: 185 RKEGWSDSTYGVTKIGVSVLSRIYARKLREQRAGDKILLNACCPGWVRTDMGG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|P48758|CBR1_MOUSE Carbonyl reductase [NADPH] 1 OS=Mus musculus GN=Cbr1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 51/235 (21%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA--------- 235
S VA+VTGANKG+GF I + LC +F G + L ARD+++G AVQ L+
Sbjct: 4 SRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFHQLD 63
Query: 236 -----------------------------------STVPFAIQAEKTILTNYLGLVRTCV 260
PF IQAE T+ TN+ G C
Sbjct: 64 IDNPQSIRALRDFLLKEYGGLDVLVNNAGIAFKVNDDTPFHIQAEVTMKTNFFGTRDVCK 123
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITN--LELKKRLRQL----REPVSLRSLNITKEHPR 314
L PL++ RVVN+SS L + N LEL+++ R E V L + +
Sbjct: 124 ELLPLIKPQGRVVNVSSMV-SLRALKNCRLELQQKFRSETITEEELVGLMNKFVEDTKKG 182
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
H +GWP+SAY V+KIGV +L+RI +K + + ++NA PG+V T+M+
Sbjct: 183 VHAEEGWPNSAYGVTKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMAG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|P47844|CBR1_RABIT Carbonyl reductase [NADPH] 1 OS=Oryctolagus cuniculus GN=CBR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 110/236 (46%), Gaps = 50/236 (21%)
Query: 184 PSER-VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA------- 235
PS+R VA+VTGANKG+GF I ++LC F G + LTA+D+ +G AVQ L+
Sbjct: 2 PSDRRVALVTGANKGVGFAITRALCRLFSGDVLLTAQDEAQGQAAVQQLQAEGLSPRFHQ 61
Query: 236 -------------------------------------STVPFAIQAEKTILTNYLGLVRT 258
T PF IQAE T+ TN+ G
Sbjct: 62 LDITDLQSIRALRDFLRRAYGGLNVLVNNAVIAFKMEDTTPFHIQAEVTMKTNFDGTRDV 121
Query: 259 CVFLFPLLRRHARVVNLSS-SAGHLSQITNLELKKRLRQL----REPVSLRSLNITKEHP 313
C L PL+R RVVN+SS + + + EL+++ R E V L +
Sbjct: 122 CTELLPLMRPGGRVVNVSSMTCLRALKSCSPELQQKFRSETITEEELVGLMKKFVEDTKK 181
Query: 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
H +GWPD+AY V+K+GV +L+RI + G ++NA PG+V T+M
Sbjct: 182 GVHQTEGWPDTAYGVTKMGVTVLSRIQARHLSEHRGGDKILVNACCPGWVRTDMGG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|Q3SZD7|CBR1_BOVIN Carbonyl reductase [NADPH] 1 OS=Bos taurus GN=CBR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 115/239 (48%), Gaps = 65/239 (27%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK--------------D 233
VA+VTGANKG+GF IV+ LC +F G + LTARD+ +G AVQ L+ D
Sbjct: 7 VALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFHQLDIDD 66
Query: 234 R------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLF 263
R A T PF IQAE T+ TN+ G C L
Sbjct: 67 RQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRDVCTELL 126
Query: 264 PLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEH----------- 312
PL++ RVVN+SS + LKK R+L++ RS IT+E
Sbjct: 127 PLIKPQGRVVNVSSFV------SVNSLKKCSRELQQ--KFRSETITEEELVGLMNKFVED 178
Query: 313 --PRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
H +GWPD+AY V+KIGV +L+RI+ +K + G ++NA PG+V T+M
Sbjct: 179 TKNGVHRKEGWPDTAYGVTKIGVTVLSRIHARKLSEQRGGDKILLNACCPGWVRTDMGG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|Q8MI29|CBR1_MACFA Carbonyl reductase [NADPH] 1 OS=Macaca fascicularis GN=CBR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 108/232 (46%), Gaps = 49/232 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------ 234
RVA+VTG+NKG+G IV+ LC F G + LTARD +G AVQ L+
Sbjct: 6 RVALVTGSNKGIGLAIVRDLCRLFSGEVVLTARDVARGQAAVQQLQAEGLSPRFHQLDID 65
Query: 235 --------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFL 262
A PF IQAE T+ TN+ G C L
Sbjct: 66 DLQSIRTLRDFLLKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 125
Query: 263 FPLLRRHARVVNLSS--SAGHLSQIT-NLELKKRLRQLREPVSLRSLNITKEHPR--AHV 317
PL++ RVVN+SS S L + L+ K R + E + +N E + H
Sbjct: 126 LPLIKPQGRVVNISSMMSLRALKSCSPELQQKFRSETITEEELVGLMNKFAEDTKKGVHQ 185
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+GWP SAY V+KIGV +L+RI+ +K + ++NA PG+V T+M+
Sbjct: 186 KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|P16152|CBR1_HUMAN Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CBR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 51/232 (21%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------- 234
VA+VTG NKG+G IV+ LC F G + LTARD +G AVQ L+
Sbjct: 7 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD 66
Query: 235 -------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLF 263
A PF IQAE T+ TN+ G C L
Sbjct: 67 LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELL 126
Query: 264 PLLRRHARVVNLSS--SAGHLSQITNLELKKRLRQL----REPVSLRSLNITKEHPRAHV 317
PL++ RVVN+SS S L + EL+++ R E V L + + H
Sbjct: 127 PLIKPQGRVVNVSSIMSVRALKSCSP-ELQQKFRSETITEEELVGLMNKFVEDTKKGVHQ 185
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+GWP SAY V+KIGV +L+RI+ +K + ++NA PG+V T+M+
Sbjct: 186 KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|Q5RCU5|CBR1_PONAB Carbonyl reductase [NADPH] 1 OS=Pongo abelii GN=CBR1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 51/232 (21%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------- 234
VA+VTG NKG+G IV+ LC F G + LTARD +G AVQ L+
Sbjct: 7 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVARGQAAVQQLQAEGLSPRFHQLDIDD 66
Query: 235 -------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLF 263
A PF IQAE T+ TN+ G C L
Sbjct: 67 LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELL 126
Query: 264 PLLRRHARVVNLSS--SAGHLSQITNLELKKRLRQL----REPVSLRSLNITKEHPRAHV 317
PL++ RVVN+SS S L + EL+++ R E V L + + H
Sbjct: 127 PLIKPQGRVVNVSSIMSVRALKSCSP-ELQQKFRSETITEEELVGLMNKFVEDTKKGVHQ 185
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+GWP SAY V+KIGV +L+RI+ +K + ++NA PG+V T+M+
Sbjct: 186 KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDRILLNACCPGWVRTDMAG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|P47727|CBR1_RAT Carbonyl reductase [NADPH] 1 OS=Rattus norvegicus GN=Cbr1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 49/231 (21%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA------------ 235
VA+VTGANKG+GF IV+ LC +F G + LTARD+ +G EAV+ L+
Sbjct: 7 VALVTGANKGIGFAIVRDLCRKFLGDVVLTARDESRGHEAVKQLQTEGLSPRFHQLDIDN 66
Query: 236 --------------------------------STVPFAIQAEKTILTNYLGLVRTCVFLF 263
PF IQAE T+ TN+ G C L
Sbjct: 67 PQSIRALRDFLLQEYGGLNVLVNNAGIAFKVVDPTPFHIQAEVTMKTNFFGTQDVCKELL 126
Query: 264 PLLRRHARVVNLSSSAGHLS-QITNLELKKRLRQL----REPVSLRSLNITKEHPRAHVA 318
P+++ RVVN+SSS + + + EL+++ R E V L + I H
Sbjct: 127 PIIKPQGRVVNVSSSVSLRALKSCSPELQQKFRSETITEEELVGLMNKFIEDAKKGVHAK 186
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+GWP+SAY V+KIGV +L+RIY +K + E ++NA PG+V T+M+
Sbjct: 187 EGWPNSAYGVTKIGVTVLSRIYARKLNEERREDKILLNACCPGWVRTDMAG 237
|
NADPH-dependent reductase with broad substrate specificity. Catalyzes the reduction of a wide variety of carbonyl compounds including quinones, prostaglandins, menadione, plus various xenobiotics. Catalyzes the reduction of the antitumor anthracyclines doxorubicin and daunorubicin to the cardiotoxic compounds doxorubicinol and daunorubicinol. Can convert prostaglandin E2 to prostaglandin F2-alpha. Can bind glutathione, which explains its higher affinity for glutathione-conjugated substrates. Catalyzes the reduction of S-nitrosoglutathione. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 9 |
| >sp|O75828|CBR3_HUMAN Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CBR3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 107/232 (46%), Gaps = 51/232 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAST--------- 237
RVA+VTGAN+G+G I + LC QF G + LTARD +G AVQ L+ +
Sbjct: 6 RVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFHQLDID 65
Query: 238 -----------------------------------VPFAIQAEKTILTNYLGLVRTCVFL 262
+PF I+AE T+ TN+ C L
Sbjct: 66 DLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRNMCNEL 125
Query: 263 FPLLRRHARVVNLSS-SAGHLSQITNLELKKRL--RQLREP--VSLRSLNITKEHPRAHV 317
P+++ H RVVN+SS + + +L++R L E V L + H
Sbjct: 126 LPIMKPHGRVVNISSLQCLRAFENCSEDLQERFHSETLTEGDLVDLMKKFVEDTKNEVHE 185
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS 368
+GWP+S Y VSK+GV +L+RI ++ D E D++ +NA PG V T+M
Sbjct: 186 REGWPNSPYGVSKLGVTVLSRILARRLD-EKRKADRILVNACCPGPVKTDMD 236
|
Has low NADPH-dependent oxidoreductase activity towards 4-benzoylpyridine and menadione (in vitro). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | ||||||
| 340719469 | 276 | PREDICTED: carbonyl reductase [NADPH] 1- | 0.386 | 0.677 | 0.402 | 5e-39 | |
| 307200580 | 274 | Carbonyl reductase [NADPH] 1 [Harpegnath | 0.390 | 0.689 | 0.428 | 8e-39 | |
| 350410469 | 276 | PREDICTED: carbonyl reductase [NADPH] 1- | 0.386 | 0.677 | 0.398 | 9e-39 | |
| 383863073 | 276 | PREDICTED: carbonyl reductase [NADPH] 1- | 0.386 | 0.677 | 0.389 | 2e-38 | |
| 442749421 | 277 | Putative 20-hydroxysteroid dehydrogenase | 0.386 | 0.675 | 0.423 | 5e-38 | |
| 427787661 | 277 | Putative 20-hydroxysteroid dehydrogenase | 0.386 | 0.675 | 0.432 | 5e-38 | |
| 91083531 | 282 | PREDICTED: similar to predicted protein | 0.388 | 0.666 | 0.406 | 1e-37 | |
| 380029301 | 271 | PREDICTED: carbonyl reductase [NADPH] 1- | 0.382 | 0.682 | 0.407 | 3e-37 | |
| 332372658 | 282 | unknown [Dendroctonus ponderosae] | 0.380 | 0.652 | 0.390 | 2e-36 | |
| 346471833 | 277 | hypothetical protein [Amblyomma maculatu | 0.386 | 0.675 | 0.423 | 3e-36 |
| >gi|340719469|ref|XP_003398176.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 129/236 (54%), Gaps = 49/236 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----------- 235
RVAVVTG NKG+GF IVK LC+QFDG +YLTARD +G A++ L+ +
Sbjct: 3 RVAVVTGGNKGIGFAIVKHLCKQFDGVVYLTARDVTRGQNAIKELEKQGLKPKFHQLDIT 62
Query: 236 ---------------------------------STVPFAIQAEKTILTNYLGLVRTCVFL 262
+T PF++QAE+T+ NY L + C L
Sbjct: 63 DESSISTFHDYLEKTYQGLDVLVNNAAIAFKTTATEPFSLQAEETLRVNYFSLRKVCSKL 122
Query: 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAHVA 318
+PLL+ HARVV++SSSAGHLS+I LKKR E ++ I H+
Sbjct: 123 YPLLKTHARVVHVSSSAGHLSKIPGETLKKRFSDPNLTEEELDNIMHEFIDAAKTNTHLQ 182
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNV 374
KGW +SAY SK+GV+ L RI+Q+ F+ + +D V+NAVHPGYV T+M+S G +
Sbjct: 183 KGWANSAYVASKVGVSALARIHQRMFNSDT-REDLVVNAVHPGYVDTDMTSHKGTL 237
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|307200580|gb|EFN80721.1| Carbonyl reductase [NADPH] 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 129/238 (54%), Gaps = 49/238 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-------------- 232
R+AVVTG NKG+GF IVK+LC+QFDG +YLTARD +G AV LK
Sbjct: 4 RIAVVTGGNKGIGFAIVKALCQQFDGIVYLTARDSNRGLTAVGELKKQGLKSEFHQLDIN 63
Query: 233 DRAS------------------------------TVPFAIQAEKTILTNYLGLVRTCVFL 262
D AS T PFAIQAE+TI NY L R C L
Sbjct: 64 DDASVAEFHDYLKDKYGGLDVLVNNAAIAFKTDATEPFAIQAEETIKVNYFSLRRVCTAL 123
Query: 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAHVA 318
+PLLR HARVV++SSSAG LS IT LKK++ E ++ + H+
Sbjct: 124 YPLLRPHARVVHVSSSAGRLSNITGDALKKKIADPNLSEEELDNIMRGFVNAAKSGTHLQ 183
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNI 376
GW +SAY SKIGV+ LT I+Q F+ + +D +NAVHPGYV T+M+S G++ I
Sbjct: 184 AGWSNSAYVASKIGVSALTGIHQAMFNADP-REDIAVNAVHPGYVDTDMTSHKGHLKI 240
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|350410469|ref|XP_003489050.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 129/236 (54%), Gaps = 49/236 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----------- 235
RVAVVTG NKG+GF IVK LC+QFDG +YLTARD +G A++ L+ +
Sbjct: 3 RVAVVTGGNKGIGFAIVKHLCKQFDGVVYLTARDVTRGQNAIKELEKQGLNPKFHQLDVT 62
Query: 236 ---------------------------------STVPFAIQAEKTILTNYLGLVRTCVFL 262
+T PF++QAE+T+ NY L + C L
Sbjct: 63 DESSISTFHDYLKKTYQGLDILVNNAAIAFKTTATEPFSLQAEETLRVNYFSLRKVCSKL 122
Query: 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAHVA 318
+PLL+ HARVV++SSS+GHLS+I LKKR E ++ I H+
Sbjct: 123 YPLLKTHARVVHVSSSSGHLSKIPGESLKKRFSDPNLTEEELDNIMHEFIDAAKTNTHLE 182
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNV 374
KGW +SAY SK+GV+ L RI+Q+ F+ + +D V+NAVHPGYV T+M+S G +
Sbjct: 183 KGWANSAYVASKVGVSALARIHQRMFNSDT-REDLVVNAVHPGYVDTDMTSHKGTL 237
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|383863073|ref|XP_003707007.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 129/236 (54%), Gaps = 49/236 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------ 234
RVAVVTG NKG+GF IVK+LC+QFDG +YLTARD +G AV+ L+D+
Sbjct: 3 RVAVVTGGNKGIGFAIVKALCKQFDGVVYLTARDVNRGQNAVKQLEDQGLTPKFHQLDVT 62
Query: 235 --------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFL 262
A+T PF++QAE+T+ NY L + C L
Sbjct: 63 DENSISTFRDYLQKTYGGLDILVNNAAIAFKMAATEPFSVQAEETVRVNYFALRKVCTLL 122
Query: 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAHVA 318
+PLL+ HARVV++SSS+G LS I + L+KR E ++ + H+
Sbjct: 123 YPLLKPHARVVHVSSSSGRLSLIPSESLRKRFSDPNLTEEELDNIMHEFVNTAKTNTHLE 182
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNV 374
GW +SAY SK+GV+ L R++QK F+ + +D +NAVHPGYV T+M+S G +
Sbjct: 183 NGWSNSAYVASKVGVSALARVHQKMFNSD-SREDLAVNAVHPGYVDTDMTSHKGTL 237
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|442749421|gb|JAA66870.1| Putative 20-hydroxysteroid dehydrogenase [Ixodes ricinus] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 127/236 (53%), Gaps = 49/236 (20%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----------- 233
S RVAVVTG+NKG+GF IVK LC+QFDG +YLTARD+K+G AV+ L+
Sbjct: 2 SPRVAVVTGSNKGIGFSIVKFLCQQFDGDVYLTARDEKRGKAAVKELEQMLLHPKFHQLD 61
Query: 234 ---------------------------------RASTVPFAIQAEKTILTNYLGLVRTCV 260
R++T PFA QAE T+ TN+ + C
Sbjct: 62 IDDPGSVLKLRDHLKDTYGGLDVLVNNAGIAFKRSATEPFAEQAEVTVKTNFFSTLNVCK 121
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAH 316
LFPLLR HARVV++SS G L ELK + R L E L + + A+
Sbjct: 122 ELFPLLRPHARVVHVSSELGMLKVTPGQELKDKFRNPDITLEELCDLMNQFVQDSKDGAN 181
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
V KGW SAY VSK+GV +LT I Q+ F+ + +D V+NAVHPGYV T+MSS G
Sbjct: 182 VDKGWGSSAYNVSKVGVTVLTFIQQRDFNGD-SREDLVVNAVHPGYVTTDMSSHRG 236
|
Source: Ixodes ricinus Species: Ixodes ricinus Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427787661|gb|JAA59282.1| Putative 20-hydroxysteroid dehydrogenase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 132/236 (55%), Gaps = 49/236 (20%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-----QVLKDR----- 234
S RVAVVTG+NKG+GF IVK LC+QF+G ++LTARD+K+G EAV Q+L+ +
Sbjct: 3 STRVAVVTGSNKGIGFCIVKFLCQQFEGDVFLTARDEKRGKEAVAELNKQLLRPKFHQLD 62
Query: 235 ----------------------------------ASTVPFAIQAEKTILTNYLGLVRTCV 260
AST PFA QAE T+ TN+ G +
Sbjct: 63 IDDTESIRRFRDFLKSEYGGLDVLVNNAGIAYKNASTAPFAEQAEVTVKTNFFGTLNVWK 122
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAH 316
LFPLLR HARVVNLSSSAG L +I ELKK+L L E L + + +
Sbjct: 123 ELFPLLRPHARVVNLSSSAGMLQRIPGEELKKKLNNPEITLEELCGLMNDFVQAAKDGKN 182
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
KGW SAY VSK+GV +L+ I Q++F+ + D V+NAVHPG+V T+M+S G
Sbjct: 183 AEKGWGQSAYVVSKVGVTVLSFIQQREFNAD-PRDDLVVNAVHPGFVDTDMTSHKG 237
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91083531|ref|XP_973193.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270010851|gb|EFA07299.1| hypothetical protein TcasGA2_TC014539 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 127/236 (53%), Gaps = 48/236 (20%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------ 232
+++VAVVTG NKG+G+ IVK LCE+F G +YLTARD +G AV LK
Sbjct: 3 AQKVAVVTGGNKGIGYAIVKGLCEKFQGIVYLTARDVGRGEAAVSKLKELGFNPLFHQLD 62
Query: 233 --DRASTV------------------------------PFAIQAEKTILTNYLGLVRTCV 260
D+ S PF+ QA+ T+ NY L+R C
Sbjct: 63 IDDQGSITKLKNHLVEKHGGLDLLVNNAAIAFKNDAPDPFSEQAKTTVAVNYFSLLRVCE 122
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV----SLRSLNITKEHPRAH 316
LFP+LR++ARVVNLSSSAGHLS+I + EL+ + V L + H
Sbjct: 123 TLFPILRQNARVVNLSSSAGHLSRIPSPELRAKFSNPNLTVPQLNKLMEQFVQDAKANKH 182
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
GW SAY VSK+GV+ LTRI Q++FD E N++ +N+VHPGYV T+M+S G
Sbjct: 183 QEAGWGTSAYVVSKVGVSALTRIQQREFDKEAPNRNISVNSVHPGYVDTDMTSHKG 238
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029301|ref|XP_003698315.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 132/238 (55%), Gaps = 53/238 (22%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----------- 235
RVAVVTG NKG+GF IVK LC+QFDG +YLTARD +G A++ L+ +
Sbjct: 3 RVAVVTGGNKGIGFAIVKQLCKQFDGVVYLTARDVNRGLNAIKQLEKQGLKPKFHQLDIT 62
Query: 236 ---------------------------------STVPFAIQAEKTILTNYLGLVRTCVFL 262
+ PF+IQA +T+ TNY GL + C L
Sbjct: 63 DDNSISTFYNYLEQTYKGLDVLVNNAAIAFKMDAKEPFSIQAAETLKTNYFGLRKVCSKL 122
Query: 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL-NITKEHPRA-----H 316
+PLL+ HARVV++SSS+GHLS I + L+ R L ++ L NI E A H
Sbjct: 123 YPLLKPHARVVHVSSSSGHLSLIPSETLRNRF--LNPNLTEEELDNIMHEFVEAAKTNTH 180
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNV 374
+ KGW +SAY VSK+GV+ L R++Q+ F+ + Q V+NAVHPGYV T+M+S G +
Sbjct: 181 LEKGWANSAYVVSKVGVSALARVHQRIFNSD-SRQGLVVNAVHPGYVDTDMTSHRGTL 237
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|332372658|gb|AEE61471.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 131/238 (55%), Gaps = 54/238 (22%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD------------ 233
++VA+VTG NKG+G+ IVK LCE+F G +YLTARD +G AV LK+
Sbjct: 4 QKVAIVTGGNKGIGYAIVKGLCEKFKGTVYLTARDVSRGEAAVAKLKELGLNPSFHQLDT 63
Query: 234 --------------------------------RASTVPFAIQAEKTILTNYLGLVRTCVF 261
A+ PF+ QA+ TI NY ++ C
Sbjct: 64 TDQNSIDKLKKHISENHGGFDLLVNNAAIAFKNAAPEPFSEQAKTTIAVNYFATLKVCEA 123
Query: 262 LFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREP-VSLRSLN------ITKEHPR 314
LFPLLR +ARVVNLSSSAGHLS+I + +L+++ L +P +++ LN +
Sbjct: 124 LFPLLRANARVVNLSSSAGHLSRIPSEQLRQK---LNDPNLTVAQLNQLMEKFVEDAKDN 180
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
H GW +SAY VSK+GV+ LT+I Q++FD E ++ +N+VHPGYV T+M+S G
Sbjct: 181 KHQEAGWGNSAYVVSKVGVSALTKIQQREFDKETPCRNISVNSVHPGYVDTDMTSHKG 238
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|346471833|gb|AEO35761.1| hypothetical protein [Amblyomma maculatum] | Back alignment and taxonomy information |
|---|
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 126/236 (53%), Gaps = 49/236 (20%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-----QVLK------- 232
S RVAVVTG NKG+G IVK LC+QFDG ++LTARD+K+G AV Q+L+
Sbjct: 3 STRVAVVTGGNKGIGLSIVKFLCQQFDGDVFLTARDEKRGNAAVSELNKQLLRPKFHQLD 62
Query: 233 --------------------------------DRASTVPFAIQAEKTILTNYLGLVRTCV 260
+ ST PF QAE T+ TN+ + C
Sbjct: 63 IDDLESIRKFRDFLKSTYGGLDVLVNNAGIAYKQDSTAPFGEQAEVTVKTNFFSTLNVCK 122
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ----LREPVSLRSLNITKEHPRAH 316
LFPLLR HARVVN+SS G L +I ELKK+L L E SL + +
Sbjct: 123 ELFPLLRPHARVVNVSSMCGMLQRIPGEELKKKLSNPNITLEELCSLMEEFVQAAKEGKN 182
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
KGW SAY VSK+GV +L+ I Q++F+ E +D V+NAVHPGYV T+MSS G
Sbjct: 183 KEKGWGQSAYNVSKVGVTVLSFIQQREFN-EDPREDLVVNAVHPGYVDTDMSSHKG 237
|
Source: Amblyomma maculatum Species: Amblyomma maculatum Genus: Amblyomma Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | ||||||
| MGI|MGI:1309992 | 277 | Cbr3 "carbonyl reductase 3" [M | 0.295 | 0.516 | 0.353 | 3.2e-29 | |
| UNIPROTKB|F1SGX4 | 277 | CBR3 "Uncharacterized protein" | 0.274 | 0.480 | 0.357 | 6.9e-29 | |
| RGD|1309728 | 277 | Cbr3 "carbonyl reductase 3" [R | 0.295 | 0.516 | 0.34 | 8.4e-29 | |
| UNIPROTKB|Q3SZD7 | 277 | CBR1 "Carbonyl reductase [NADP | 0.274 | 0.480 | 0.376 | 1.1e-28 | |
| RGD|2286 | 277 | Cbr1 "carbonyl reductase 1" [R | 0.266 | 0.465 | 0.375 | 3.7e-27 | |
| UNIPROTKB|F1N8Y3 | 276 | CBR1 "Uncharacterized protein" | 0.268 | 0.471 | 0.362 | 1.3e-26 | |
| UNIPROTKB|F1P2X1 | 277 | CBR1 "Uncharacterized protein" | 0.268 | 0.469 | 0.362 | 1.7e-26 | |
| UNIPROTKB|G1K231 | 277 | LOC100335345 "Uncharacterized | 0.274 | 0.480 | 0.369 | 2.7e-26 | |
| UNIPROTKB|Q0VC97 | 277 | CBR3 "Carbonyl reductase 3" [B | 0.295 | 0.516 | 0.32 | 6.7e-26 | |
| UNIPROTKB|J9P7P2 | 277 | CBR1 "Uncharacterized protein" | 0.266 | 0.465 | 0.382 | 3e-25 |
| MGI|MGI:1309992 Cbr3 "carbonyl reductase 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 3.2e-29, Sum P(2) = 3.2e-29
Identities = 53/150 (35%), Positives = 75/150 (50%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG--HLSQITNXXXXXXXXX 296
PF IQAE T+ TN+ C L P+++ H RVVN+SS G L
Sbjct: 102 PFDIQAEVTLKTNFFATRNVCTELLPIMKPHGRVVNISSLQGLKALENCREDLQEKFRCD 161
Query: 297 XXXPVSLRSLN---ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L L + H +GWPDSAY VSK+GV +LTRI ++ D E D+
Sbjct: 162 TLTEVDLVDLMKKFVEDTKNEVHEREGWPDSAYGVSKLGVTVLTRILARQLD-EKRKADR 220
Query: 354 VI-NAVHPGYVATNMSSFMGNVNIFDDSST 382
++ NA PG+V T+M+ G+ + + + T
Sbjct: 221 ILLNACCPGWVKTDMARDQGSRTVEEGAET 250
|
|
| UNIPROTKB|F1SGX4 CBR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 6.9e-29, Sum P(2) = 6.9e-29
Identities = 50/140 (35%), Positives = 72/140 (51%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-----HLSQITNXXXXXX 293
PF IQAE T+ TN+ G C+ L P+++ H RVVN+SS G + S+
Sbjct: 102 PFDIQAEMTLKTNFFGTRNVCIELLPIIKPHGRVVNISSLLGSKALENCSEDLQEKFRCE 161
Query: 294 XXXXXXPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L + H +GWP SAY VSK+GV +L+RI ++ D E D+
Sbjct: 162 ALTEEDLVDLMKKFVEDAKNEVHEREGWPSSAYGVSKLGVTVLSRILAQRLD-EKRKADR 220
Query: 354 VI-NAVHPGYVATNMSSFMG 372
++ NA PG+V T+M+ G
Sbjct: 221 ILLNACCPGWVKTDMTGGQG 240
|
|
| RGD|1309728 Cbr3 "carbonyl reductase 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 8.4e-29, Sum P(2) = 8.4e-29
Identities = 51/150 (34%), Positives = 76/150 (50%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-----HLSQITNXXXXXX 293
PF +QAE T+ TN+ C L P+++ H RVVN+SS G + S+
Sbjct: 102 PFDVQAEVTLKTNFFATRNVCTELLPIMKPHGRVVNVSSLQGLKALENCSEDLQERFRCD 161
Query: 294 XXXXXXPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L + H +GWPDSAY VSK+GV +LTRI ++ D E D+
Sbjct: 162 TLTEGDLVDLMKKFVEDTKNEVHEREGWPDSAYGVSKLGVTVLTRILARQLD-EKRKADR 220
Query: 354 VI-NAVHPGYVATNMSSFMGNVNIFDDSST 382
++ NA PG+V T+M+ G+ + + + T
Sbjct: 221 ILLNACCPGWVKTDMARDQGSRTVEEGAET 250
|
|
| UNIPROTKB|Q3SZD7 CBR1 "Carbonyl reductase [NADPH] 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 52/138 (37%), Positives = 72/138 (52%)
Query: 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS--SAGHLSQITNXXXXX 292
A T PF IQAE T+ TN+ G C L PL++ RVVN+SS S L + +
Sbjct: 98 ADTTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQK 157
Query: 293 XXXXXXXPVSLRSL-NITKEHPR--AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELG 349
L L N E + H +GWPD+AY V+KIGV +L+RI+ +K + G
Sbjct: 158 FRSETITEEELVGLMNKFVEDTKNGVHRKEGWPDTAYGVTKIGVTVLSRIHARKLSEQRG 217
Query: 350 NQDKVINAVHPGYVATNM 367
++NA PG+V T+M
Sbjct: 218 GDKILLNACCPGWVRTDM 235
|
|
| RGD|2286 Cbr1 "carbonyl reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 51/136 (37%), Positives = 71/136 (52%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-----HLSQITNXXXXXX 293
PF IQAE T+ TN+ G C L P+++ RVVN+SSS S
Sbjct: 102 PFHIQAEVTMKTNFFGTQDVCKELLPIIKPQGRVVNVSSSVSLRALKSCSPELQQKFRSE 161
Query: 294 XXXXXXPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L + I H +GWP+SAY V+KIGV +L+RIY +K + E +DK
Sbjct: 162 TITEEELVGLMNKFIEDAKKGVHAKEGWPNSAYGVTKIGVTVLSRIYARKLN-EERREDK 220
Query: 354 VI-NAVHPGYVATNMS 368
++ NA PG+V T+M+
Sbjct: 221 ILLNACCPGWVRTDMA 236
|
|
| UNIPROTKB|F1N8Y3 CBR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 49/135 (36%), Positives = 71/135 (52%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS----SA-GHLSQITNXXXXXX 293
PFA+QAE T+ TN+ G C L PL++ + RVVN+SS SA G SQ
Sbjct: 101 PFAVQAEVTLKTNFFGTRNICTELLPLIKPYGRVVNVSSMVSISALGGCSQELQKKFRSD 160
Query: 294 XXXXXXPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L + + H +GWP++AY VSKIGV +L+RI + + +
Sbjct: 161 TITEDELVELMTKFVEDTKKSVHEKEGWPNTAYGVSKIGVTVLSRIQARMLNEKRKGDHI 220
Query: 354 VINAVHPGYVATNMS 368
++NA PG+V T+M+
Sbjct: 221 LLNACCPGWVRTDMA 235
|
|
| UNIPROTKB|F1P2X1 CBR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 49/135 (36%), Positives = 71/135 (52%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS----SA-GHLSQITNXXXXXX 293
PFA+QAE T+ TN+ G C L PL++ + RVVN+SS SA G SQ
Sbjct: 102 PFAVQAEVTLKTNFFGTRNICTELLPLIKPYGRVVNVSSMVSISALGGCSQELQKKFRSD 161
Query: 294 XXXXXXPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L + + H +GWP++AY VSKIGV +L+RI + + +
Sbjct: 162 TITEDELVELMTKFVEDTKKSVHEKEGWPNTAYGVSKIGVTVLSRIQARMLNEKRKGDHI 221
Query: 354 VINAVHPGYVATNMS 368
++NA PG+V T+M+
Sbjct: 222 LLNACCPGWVRTDMA 236
|
|
| UNIPROTKB|G1K231 LOC100335345 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 51/138 (36%), Positives = 71/138 (51%)
Query: 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS--SAGHLSQITNXXXXX 292
A T PF IQAE T+ TN+ G C L PL++ RVVN+SS S L + +
Sbjct: 98 ADTTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQK 157
Query: 293 XXXXXXXPVSLRSL-NITKEHPR--AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELG 349
L L N E + H + WPD+AY V+KIGV +L+RI+ +K + G
Sbjct: 158 FRSETITEEELVGLMNKFVEDTKNGVHRKECWPDTAYGVTKIGVTVLSRIHARKLSEQRG 217
Query: 350 NQDKVINAVHPGYVATNM 367
++NA PG+V T+M
Sbjct: 218 GDKILLNACCPGWVRTDM 235
|
|
| UNIPROTKB|Q0VC97 CBR3 "Carbonyl reductase 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 6.7e-26, Sum P(2) = 6.7e-26
Identities = 48/150 (32%), Positives = 75/150 (50%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-----HLSQITNXXXXXX 293
PF IQAE T+ TN+ C L P+++ H RVVN+SSS G + S+
Sbjct: 102 PFDIQAEMTLKTNFFATRNVCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCE 161
Query: 294 XXXXXXPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
V L + H +GWP+SAY VSK+GV +L+RI ++ + E D+
Sbjct: 162 TLTEEDLVDLMKKFVEDTKNEVHEREGWPNSAYGVSKLGVTVLSRILARRLE-EKRKADR 220
Query: 354 VI-NAVHPGYVATNMSSFMGNVNIFDDSST 382
++ NA PG+V T++ + + + + T
Sbjct: 221 ILLNACCPGWVKTDLGGAHASRTVEEGAET 250
|
|
| UNIPROTKB|J9P7P2 CBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 52/136 (38%), Positives = 71/136 (52%)
Query: 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS--SAGHLSQITNXXXXXXXXX 296
PF IQAE T+ TN+ G C L PL++ RVVN+SS S L +
Sbjct: 102 PFHIQAEVTMKTNFFGTRDVCTELLPLMKPQGRVVNVSSVVSVRALKSCSPELQQKFRSE 161
Query: 297 XXXPVSLRSL-NITKEHPR--AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
L L N E + H +GWPD+AY V+KIGV +L+RI+ +K E DK
Sbjct: 162 AITEEELVGLMNKFVEDTKKGVHRNEGWPDNAYGVTKIGVTVLSRIHARKLS-EQRRDDK 220
Query: 354 VI-NAVHPGYVATNMS 368
++ NA PG+V T+M+
Sbjct: 221 ILLNACCPGWVRTDMA 236
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 484 | |||
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 3e-39 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 2e-13 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 3e-13 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 7e-11 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 2e-09 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 2e-08 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 5e-08 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 6e-08 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 4e-07 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 8e-07 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 2e-06 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 8e-06 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 1e-05 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 1e-05 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 1e-05 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 1e-05 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 1e-05 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 2e-05 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 3e-05 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-05 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 6e-05 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 7e-05 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 8e-05 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 9e-05 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 1e-04 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 1e-04 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 1e-04 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 1e-04 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-04 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 4e-04 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 4e-04 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 5e-04 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 6e-04 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 7e-04 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 8e-04 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 8e-04 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 0.001 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 0.001 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 0.002 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.002 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 0.003 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 0.003 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 0.004 | |
| PRK12935 | 247 | PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro | 0.004 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 0.004 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-39
Identities = 64/231 (27%), Positives = 91/231 (39%), Gaps = 93/231 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-------------- 232
+VA+VTGAN+G+GF IV+ L + G + LTARD ++G AV+ L+
Sbjct: 1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVT 60
Query: 233 DRAS-------------------------------TVPFAIQAEKTILTNYLGLVRTCVF 261
D AS + P QA +T+ TN+ G V
Sbjct: 61 DDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQA 120
Query: 262 LFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
L PLL++ R+VN+SS G L+
Sbjct: 121 LLPLLKKSPAGRIVNVSSGLGSLT------------------------------------ 144
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSS 369
SAY VSK +N LTRI K+ + + +NA PG+V T+M
Sbjct: 145 ----SAYGVSKAALNALTRILAKEL-----KETGIKVNACCPGWVKTDMGG 186
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 44/226 (19%), Positives = 68/226 (30%), Gaps = 90/226 (39%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA--- 244
A+VTGA+ G+G I + L +G + L R+++ AE + + V
Sbjct: 1 ALVTGASSGIGRAIARRLAR--EGAKVVLADRNEEALAELAAIEALGGNAVAVQADVSDE 58
Query: 245 ----------------------------------------EKTILTNYLGLVRTCVFLFP 264
++ + N G+ P
Sbjct: 59 EDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAALP 118
Query: 265 LLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
+++ R+VN+SS AG + P
Sbjct: 119 HMKKQGGGRIVNISSVAGL-------------------------------------RPLP 141
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+AYA SK + LTR EL +NAV PG V T M
Sbjct: 142 GQAAYAASKAALEGLTRSLAL----ELAPYGIRVNAVAPGLVDTPM 183
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 50/233 (21%), Positives = 75/233 (32%), Gaps = 89/233 (38%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ------------- 229
D S +VA+VTGA+ G+G I ++L + + R +++ AEA+
Sbjct: 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAA 61
Query: 230 ----VLKDRASTVPFAIQA-------------------------------EKTILTNYLG 254
V D S A ++ I N LG
Sbjct: 62 VAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLG 121
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
PL+++ R+VN+SS AG
Sbjct: 122 AFLLTRAALPLMKK-QRIVNISSVAGL--------------------------------- 147
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+AYA SK + LT+ EL + +NAV PGY+ T M
Sbjct: 148 ---GGPPGQAAYAASKAALIGLTKALAL----ELAPRGIRVNAVAPGYIDTPM 193
|
Length = 251 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 7e-11
Identities = 54/233 (23%), Positives = 79/233 (33%), Gaps = 85/233 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDR----------- 234
+V V+TGAN G+G + L + G + + R+++KG EA +K
Sbjct: 2 KVVVITGANSGIGKETARELAK--RGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQL 59
Query: 235 -----ASTVPFA--IQA--------------------------EKTILTNYLGLVRTCVF 261
AS FA A E NYLG
Sbjct: 60 DLSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFELQFAVNYLGHFLLTNL 119
Query: 262 LFPLLRR--HARVVNLSSSA---GHLS-QITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
L P+L+ +R+VN+SS A G + +LE K +
Sbjct: 120 LLPVLKASAPSRIVNVSSIAHRAGPIDFNDLDLENNKEYSPYK----------------- 162
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
AY SK+ L TR ++ V +NA+HPG V T +
Sbjct: 163 ---------AYGQSKLANILFTRELARRL-----EGTGVTVNALHPGVVRTEL 201
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 83/228 (36%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA---------VQVLK-DRASTV 238
++TGA++G+G +V+ L + + + T RD E + +L+ D +
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAALGASHSRLHILELDVTDEI 60
Query: 239 PFAIQA----------------------------------EKTILTNYLGLVRTCVFLFP 264
+ +A + N LG + P
Sbjct: 61 AESAEAVAERLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLLTQAFLP 120
Query: 265 LLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
LL + A+++N+SS G + T+
Sbjct: 121 LLLKGARAKIINISSRVGSIGDNTSG---------------------------------G 147
Query: 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370
+Y SK +N+LT K EL + ++HPG+V T+M
Sbjct: 148 WYSYRASKAALNMLT----KSLAVELKRDGITVVSLHPGWVRTDMGGP 191
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---RASTVPF--- 240
+VA+VTGA++G+GFGI L E I + +R+++K EA Q+++ A+
Sbjct: 6 KVALVTGASRGIGFGIASGLAEA-GANIVINSRNEEKAEEAQQLIEKEGVEATAFTCDVS 64
Query: 241 ---AIQA-----EKT-----ILTNYLGLVRTCVFL-FPLLRRHARV-VNLSSSAGHLSQI 285
AI+A E+ IL N G++R FP + VNL+ +SQ
Sbjct: 65 DEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNG-VFFVSQA 123
Query: 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345
R + + + +NI G P AYA SK GV LT+
Sbjct: 124 V-------ARHMIKQGHGKIINICSLLS---ELGGPPVPAYAASKGGVAGLTKALAT--- 170
Query: 346 CELGNQDKVINAVHPGYVATNMS 368
E +NA+ PGY AT M+
Sbjct: 171 -EWARHGIQVNAIAPGYFATEMT 192
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 52/274 (18%), Positives = 90/274 (32%), Gaps = 90/274 (32%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV------ 238
++ +VTGAN+G+G V+SL +Y RD A V D+ +
Sbjct: 2 KDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYGDKVVPLRLDVTD 61
Query: 239 PFAIQA------EKTIL--------------------------TNYLGLVRTCVFLFPLL 266
P +I+A + ++ N GL+R P+L
Sbjct: 62 PESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRLAQAFAPVL 121
Query: 267 RRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+ + +VNL+S SL++ +
Sbjct: 122 KANGGGAIVNLNSV----------------------ASLKNF--------PAMG------ 145
Query: 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFN 384
Y+ SK LT+ + EL Q ++ +VHPG + T M++ G S
Sbjct: 146 TYSASKSAAYSLTQGLRA----ELAAQGTLVLSVHPGPIDTRMAAGAG----GPKESPET 197
Query: 385 AFERVISHFLIGQQINTFIPAIYTVPFAIQAEKT 418
E V+ G+ ++ A Q ++
Sbjct: 198 VAEAVLKALKAGEF------HVFPDEMAKQVKEA 225
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 408 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS 454
+ P QA +T+ TN+ G V L PLL++ R+VN+SS G L+
Sbjct: 96 STPTREQARETMKTNFFGTVDVTQALLPLLKKSPAGRIVNVSSGLGSLT 144
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 50/207 (24%), Positives = 72/207 (34%), Gaps = 47/207 (22%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQ----------FDGYIYLTARDKKKGAEAVQV---LKD 233
+ A+VTGA +GLG ++L E L A + G A + L D
Sbjct: 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD 67
Query: 234 RASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHA--------RVVNLSSSAG 280
AS F A L N G+ + V+N++
Sbjct: 68 PASVQRFFDAAAAALGGLDGLVNNAGITN--------SKSATELDIDTWDAVMNVNVRG- 118
Query: 281 HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIY 340
T L L+ L LR+ R +N+ + K AY SK V +TR
Sbjct: 119 -----TFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKL---GAYVASKGAVIGMTRSL 170
Query: 341 QKKFDCELGNQDKVINAVHPGYVATNM 367
+ ELG + +NA+ PG AT
Sbjct: 171 AR----ELGGRGITVNAIAPGLTATEA 193
|
Length = 250 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 49/235 (20%), Positives = 69/235 (29%), Gaps = 91/235 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-------- 238
RVA+VTGA +G+G I L + + A ++++
Sbjct: 7 RVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVR 65
Query: 239 -PFAIQA-----------------------------------EKTILTNYLGLVRTCVFL 262
A++A E+ I N G
Sbjct: 66 DRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAA 125
Query: 263 FPLLRRHA--RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
P L R R+V SS AG G
Sbjct: 126 LPALIRAGGGRIVLTSSVAG------------------------------------PRVG 149
Query: 321 WPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNV 374
+P A YA SK G+ TR EL ++ +N+VHPG V T M GN+
Sbjct: 150 YPGLAHYAASKAGLVGFTRALAL----ELAARNITVNSVHPGGVDTPM---AGNL 197
|
Length = 251 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 56/232 (24%), Positives = 73/232 (31%), Gaps = 98/232 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDKKKGAEAVQVLKDRASTVPF 240
+VA+VTGA++G+G I K L DG Y A K E V ++
Sbjct: 4 KVALVTGASRGIGRAIAKRLAR--DGASVVVNY----ASSKAAAEEVVAEIEAAGGKA-I 56
Query: 241 AIQA---------------EKT-----ILTNYLGLVRTC--------------------V 260
A+QA EK IL N G++
Sbjct: 57 AVQADVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDRMFTVNTKGA 116
Query: 261 FLF-----PLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
F LR R++N+SSS P
Sbjct: 117 FFVLQEAAKRLRDGGRIINISSSLTAAYT----------------------------PNY 148
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AYA SK V TR+ K ELG + +NAV PG V T+M
Sbjct: 149 --------GAYAGSKAAVEAFTRVLAK----ELGGRGITVNAVAPGPVDTDM 188
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 41/208 (19%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---RASTVPFAIQ 243
+VA+VTG+ +GLGF I ++L ++ + R+ AV L+ A + F I
Sbjct: 12 QVALVTGSARGLGFEIARALAGA-GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIA 70
Query: 244 AEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-----LSQITNLELKKRLR-QL 297
E+ + + + H R+ L ++ G L+++ + ++ L L
Sbjct: 71 DEEAVAAAFARIDAE----------HGRLDILVNNVGARDRRPLAELDDAAIRALLETDL 120
Query: 298 REPVSL--------------RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK 343
P+ L R + IT VA+ D+ Y +K G+ L R
Sbjct: 121 VAPILLSRLAAQRMKRQGYGRIIAITS--IAGQVARA-GDAVYPAAKQGLTGLMR----A 173
Query: 344 FDCELGNQDKVINAVHPGYVATNMSSFM 371
E G NA+ PGY AT ++ M
Sbjct: 174 LAAEFGPHGITSNAIAPGYFATETNAAM 201
|
Length = 256 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 45/236 (19%), Positives = 70/236 (29%), Gaps = 92/236 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKK----------GAEAVQV-LKDR 234
+V ++TG + G+G + +L Q GY + TAR+ K E +++ + D
Sbjct: 1 KVVLITGCSSGIGLALALALAAQ--GYRVIATARNPDKLESLGELLNDNLEVLELDVTDE 58
Query: 235 AS---TVPFAIQAEKTI--L-------------------------TNYLGLVRTCVFLFP 264
S V I+ I L N G +R P
Sbjct: 59 ESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTRAFLP 118
Query: 265 LLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
L+R+ R+VN+SS AG +
Sbjct: 119 LMRKQGSGRIVNVSSVAGLVPT------------------------------------PF 142
Query: 323 DSAYAVSKIGVNLLT---RIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVN 375
Y SK + L+ R+ F KV + PG V T +
Sbjct: 143 LGPYCASKAALEALSESLRLELAPFGI------KVTI-IEPGPVRTGFADNAAGSA 191
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 48/228 (21%), Positives = 72/228 (31%), Gaps = 82/228 (35%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK------GAEAVQV-LKD 233
+D +V +VTGAN+G+G V+ L + +Y ARD + +Q+ + D
Sbjct: 1 MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTD 60
Query: 234 RASTVPFAIQA-EKTIL--------------------------TNYLGLVRTCVFLFPLL 266
AS A A + TIL TNY G + P+L
Sbjct: 61 PASVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVL 120
Query: 267 RR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+VN+ S +
Sbjct: 121 AANGGGAIVNVLSVLS---------------------------------WVNFPNL---G 144
Query: 325 AYAVSKIGVNLLT---RIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
Y+ SK LT R EL Q + VHPG + T+M++
Sbjct: 145 TYSASKAAAWSLTQALRA-------ELAPQGTRVLGVHPGPIDTDMAA 185
|
Length = 238 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA+VTG +GLG I ++ E+ + + R+ +KG L+ + F +QA+
Sbjct: 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVF-VQAD 64
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280
+ + + +V R+ L ++AG
Sbjct: 65 LSDVEDCRRVVAAA------DEAFGRLDALVNAAG 93
|
Length = 260 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 39/206 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
VA+VTGA G+G I + L ++ G +++ AR ++ A V+ L++ +
Sbjct: 4 EVALVTGATSGIGLAIARRLGKE--GLRVFVCARGEEGLATTVKELREAGVEAD-GRTCD 60
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLS-------------QITNLELKK 292
+ LV V R+ + L ++AG + L
Sbjct: 61 VRSVPEIEALVAAAV------ARYGPIDVLVNNAGRSGGGATAELADELWLDVVETNLTG 114
Query: 293 RLRQLREPVSL---------RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK 343
R +E + R +NI + V P Y+ SK GV T K
Sbjct: 115 VFRVTKEVLKAGGMLERGTGRIINIASTGGKQGVVHAAP---YSASKHGVVGFT----KA 167
Query: 344 FDCELGNQDKVINAVHPGYVATNMSS 369
EL +NAV PG+V T M++
Sbjct: 168 LGLELARTGITVNAVCPGFVETPMAA 193
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 32/201 (15%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQ 243
S +VA+VTGA++G+G I + L DG+ + + A+ + + A A+Q
Sbjct: 4 SNKVAIVTGASRGIGAAIARRLAA--DGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQ 61
Query: 244 AEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG--HLSQITNLELKKRLRQLREPV 301
A+ L R+ L ++AG L I + +L+ R +
Sbjct: 62 ADVADAAAVTRLFDAAE------TAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIA--T 113
Query: 302 SLRSLNITKEHPRAHVAKG--------------WPD-SAYAVSKIGVNLLTRIYQKKFDC 346
+LR + H+ +G P YA SK V L +
Sbjct: 114 NLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPGYGPYAASKAAVEGLVHVLAN---- 169
Query: 347 ELGNQDKVINAVHPGYVATNM 367
EL + +NAV PG VAT +
Sbjct: 170 ELRGRGITVNAVAPGPVATEL 190
|
Length = 245 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 177 IVNGSVDPSERVAVVTGANKGLGFGIVKSL-CEQFDGYIYLTARDKKKGAEAVQVLKDRA 235
+ + + RVA+VTGA +G+G GI L E + + L D+++G++ + L + A
Sbjct: 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQ--VVLADLDRERGSKVAKALGENA 58
Query: 236 STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLR 295
+ + E + G+ L R A V N + + H + + +L L R
Sbjct: 59 WFIAMDVADEAQVA---AGVAEV---LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNR 112
Query: 296 QLREPVSLRSLNITKEH--P--RAH-----------VAKGWPDS-AYAVSKIGVNLLTRI 339
L V+L + +H P RAH + PD+ AYA SK G+ LT
Sbjct: 113 VL--AVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAASKGGLLALTH- 169
Query: 340 YQKKFDCELGNQDKVINAVHPGYV 363
LG + +V NAV PG++
Sbjct: 170 ---ALAISLGPEIRV-NAVSPGWI 189
|
Length = 255 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 55/207 (26%), Positives = 79/207 (38%), Gaps = 50/207 (24%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK 246
+VA+VTG N GLG G +L + G + E ++++ V F +Q +
Sbjct: 16 KVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTNWDETRRLIEKEGRKVTF-VQVDL 72
Query: 247 T--------------------ILTNYLGLVRTCVFLFPLLR------RHARVVNLSSSAG 280
T IL N G +R PLL +NL+S
Sbjct: 73 TKPESAEKVVKEALEEFGKIDILVNNAGTIRRA----PLLEYKDEDWNAVMDINLNS-VY 127
Query: 281 HLSQ-ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339
HLSQ + + K+ ++ S+ S K P AY SK GV LT
Sbjct: 128 HLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVP-----------AYTASKHGVAGLT-- 174
Query: 340 YQKKFDCELGNQDKVINAVHPGYVATN 366
K F EL + +NA+ PGY+ T
Sbjct: 175 --KAFANELAAYNIQVNAIAPGYIKTA 199
|
Length = 258 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 51/232 (21%), Positives = 81/232 (34%), Gaps = 92/232 (39%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEA-VQVLKDRASTVPFAI 242
+VA+VTGA++G+G I + L Q G + + + GAEA V + A+
Sbjct: 4 EGKVALVTGASRGIGRAIAERLAAQ--GANVVINYASSEAGAEALVAEIGALGGKA-LAV 60
Query: 243 QA------------EKT--------ILTNYLGLVR--------------------TCVFL 262
Q ++ IL N G+ R T VF
Sbjct: 61 QGDVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFN 120
Query: 263 F------PLL-RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
P++ +R R++N+SS G + Q
Sbjct: 121 LTKAVARPMMKQRSGRIINISSVVGLMGNP---------GQ------------------- 152
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ YA SK GV T+ + EL ++ +NAV PG++ T+M
Sbjct: 153 --------ANYAASKAGVIGFTKSLAR----ELASRGITVNAVAPGFIETDM 192
|
Length = 248 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 49/226 (21%), Positives = 70/226 (30%), Gaps = 88/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-----------KGAEAVQVLKDRA 235
+ A+VTG KG+G+ IV+ L +Y AR++K KG + + D +
Sbjct: 7 KTALVTGGTKGIGYAIVEELA-GLGAEVYTCARNQKELDECLTEWREKGFKVEGSVCDVS 65
Query: 236 S---------TVPFAIQAEKTILTNYLGLVRT-------------------------CVF 261
S TV + IL N G
Sbjct: 66 SRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEAAYHLSRL 125
Query: 262 LFPLLRRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
PLL+ +V +SS AG + V
Sbjct: 126 AHPLLKASGNGNIVFISSVAGVI---------------------------------AVPS 152
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365
G P Y +K +N LTR CE + +NAV P +AT
Sbjct: 153 GAP---YGATKGALNQLTR----SLACEWAKDNIRVNAVAPWVIAT 191
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 7e-05
Identities = 57/230 (24%), Positives = 77/230 (33%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGA----EAVQVLKDRASTVPFA 241
RVA+VTGA +GLG I L G + + R ++ A EAV+ L RA V
Sbjct: 7 RVALVTGAARGLGRAIALRLAR--AGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64
Query: 242 I-----------QAEKT-----ILTNYLGLVRTCVF------------------LFPLLR 267
+ A + IL N G+ +F LLR
Sbjct: 65 VTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLR 124
Query: 268 ---------RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
R R+VN+SS AG
Sbjct: 125 AVVPPMRKQRGGRIVNISSVAG-------------------------------------L 147
Query: 319 KGWP-DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
GWP S YA +K G+ LT+ + EL +N V PG + T+M
Sbjct: 148 PGWPGRSNYAAAKAGLVGLTKALAR----ELAEYGITVNMVAPGDIDTDM 193
|
Length = 249 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 25/195 (12%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA+VT A+ G+G I ++L + + + AR+++ A L+ + V A+ A+
Sbjct: 1 GKVALVTAASSGIGLAIARALAREGA-RVAICARNRENLERAASELRAGGAGV-LAVVAD 58
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305
T + LV RV L ++AG EL E L+
Sbjct: 59 LTDPEDIDRLVEKA------GDAFGRVDILVNNAGGPPPGPFAELT--DEDWLEAFDLKL 110
Query: 306 LN---ITKEHPRAHVAKGWPD----SAYAVSKIGVNLLT----RI----YQKKFDCELGN 350
L+ I + +GW S+ V + NL+ R K EL
Sbjct: 111 LSVIRIVRAVLPGMKERGWGRIVNISSLTVKEPEPNLVLSNVARAGLIGLVKTLSRELAP 170
Query: 351 QDKVINAVHPGYVAT 365
+N+V PGY+ T
Sbjct: 171 DGVTVNSVLPGYIDT 185
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 9e-05
Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 89/233 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK---DRASTVPF-- 240
+ A+VTGA++G+G I L DG + + +++ L+ A + F
Sbjct: 6 KTALVTGASRGIGRAIALRLAA--DGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDV 63
Query: 241 --------AIQA-------------------------------EKTILTNYLGLVRTCVF 261
I+A ++ I N G
Sbjct: 64 SDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRA 123
Query: 262 LFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
P + + R+VN+SS +G + N
Sbjct: 124 ALPPMIKARYGRIVNISSVSG-----------------------VTGNP----------- 149
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
G + Y+ +K GV T K EL ++ +NAV PG++ T+M+ +
Sbjct: 150 GQ--TNYSAAKAGVIGFT----KALALELASRGITVNAVAPGFIDTDMTEGLP 196
|
Length = 246 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK 232
+VA++TG +KG+GF I ++L + GY + +TARD+K+ EA L
Sbjct: 7 KVALITGGSKGIGFAIAEALLAE--GYKVAITARDQKELEEAAAELN 51
|
Length = 237 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK 246
+VA+VTG +GLG + L + + L+ ++G A L D A +
Sbjct: 6 KVAIVTGGARGLGLAHARLLVAE-GAKVVLSDILDEEGQAAAAELGDAARFF----HLDV 60
Query: 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLRE--PVSLR 304
T + +V T R+ L ++AG + +E L + R ++L
Sbjct: 61 TDEDGWTAVVDT------AREAFGRLDVLVNNAG-ILTGGTVE-TTTLEEWRRLLDINLT 112
Query: 305 SLNI--------TKEHPRAHV-----AKGW-PD---SAYAVSKIGVNLLTRIYQKKFDCE 347
+ + KE + +G D +AY SK V LT+ +C
Sbjct: 113 GVFLGTRAVIPPMKEAGGGSIINMSSIEGLVGDPALAAYNASKGAVRGLTKS--AALECA 170
Query: 348 LGNQDKVINAVHPGYVATNM 367
+N+VHPGY+ T M
Sbjct: 171 TQGYGIRVNSVHPGYIYTPM 190
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 52/230 (22%), Positives = 79/230 (34%), Gaps = 93/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFA---- 241
+VA+VTGA++G+G I L +G + +T R ++ AE V+ +K
Sbjct: 1 KVALVTGASRGIGRAIALRLAA--EGAKVAVTDRSEEAAAETVEEIKALGGNAAALEADV 58
Query: 242 ------------IQAEK---TILTNYLGLVR--------------------TCVFL---- 262
++AE IL N G+ R T VF
Sbjct: 59 SDREAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNVTQA 118
Query: 263 -FPLL--RRHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
+ RR R++N+SS G + N
Sbjct: 119 VIRAMIKRRSGRIINISSVVGLIGNPGQAN------------------------------ 148
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK GV T+ K EL ++ +NAV PG++ T+M
Sbjct: 149 --------YAASKAGVIGFTKSLAK----ELASRGITVNAVAPGFIDTDM 186
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 38/208 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARDKKKGAEAV-QVLKDRASTVPFA 241
++A+VTGA +G+G I + L DGY Y + D K +D+
Sbjct: 3 KIALVTGAKRGIGSAIARELLN--DGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELD 60
Query: 242 I--------------QAEKT--ILTNYLGLVRTCVFLFPLLRRHARVVNLS-SSAGHLSQ 284
+ + E IL N G+ R VF + V+N + +S +++Q
Sbjct: 61 VTDTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQ 120
Query: 285 ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 344
+ E R +NI+ + + Y+ +K G+ T K
Sbjct: 121 PL-------FAAMCEQGYGRIINISSVNGLKGQFGQ---TNYSAAKAGMIGFT----KAL 166
Query: 345 DCELGNQDKVINAVHPGYVATNMSSFMG 372
E +N + PGY+AT M MG
Sbjct: 167 ASEGARYGITVNCIAPGYIATPMVEQMG 194
|
Length = 245 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 46/236 (19%), Positives = 73/236 (30%), Gaps = 90/236 (38%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------ 232
+VA+VTGA+ G+G GI + + + +T R+++ +
Sbjct: 4 EGKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAAERVAAEILAGGRAIAVAADV 62
Query: 233 ----DRASTVPFAIQA----------------------------EKTILTNYLGLVRTCV 260
D + V A++ ++ N
Sbjct: 63 SDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQ 122
Query: 261 FLFPLLRRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P +R +VN++S+AG PR +
Sbjct: 123 AAVPAMRGEGGGAIVNVASTAGL------------------------------RPRPGLG 152
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS-SFMG 372
Y SK V LT K ELG DK+ +NAV P V T + +FMG
Sbjct: 153 ------WYNASKGAVITLT----KALAAELGP-DKIRVNAVAPVVVETGLLEAFMG 197
|
Length = 251 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAI 242
D S RVAVVTGAN GLG+ +L + ++ L R+ KG A + A+T +
Sbjct: 13 DQSGRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARI--TAATPGADV 69
Query: 243 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280
++ LT+ L VR L + R+ L ++AG
Sbjct: 70 TLQELDLTS-LASVRA--AADALRAAYPRIDLLINNAG 104
|
Length = 306 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 47/146 (32%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKK--------GAEAVQVLK----D 233
+VA++TGA+ G+G ++L E G + L AR +++ GA A L D
Sbjct: 7 KVALITGASSGIGEATARALAEA--GAKVVLAARREERLEALADEIGAGAALALALDVTD 64
Query: 234 RASTVPFAIQAEKT-----IL-------------------------TNYLGLVRTCVFLF 263
RA+ + IL TN GL+ +
Sbjct: 65 RAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVL 124
Query: 264 PLL--RRHARVVNLSSSAGHLSQITN 287
P + R+ ++NL S AG
Sbjct: 125 PGMVERKSGHIINLGSIAGRYPYPGG 150
|
Length = 246 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228
S ++A+VTGA++G+G GI L E +Y+T R
Sbjct: 2 SGKIALVTGASRGIGRGIALQLGEA-GATVYITGRTILPQLPGT 44
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 27/119 (22%), Positives = 34/119 (28%), Gaps = 41/119 (34%)
Query: 251 NYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309
N G V PLLRR RVVN+SS G R P
Sbjct: 110 NLFGTVEVTKAFLPLLRRAKGRVVNVSSMGG-----------------RVPFPAG----- 147
Query: 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
AY SK V + EL ++ + PG T ++
Sbjct: 148 --------------GAYCASKAAVEAFSDS----LRRELQPWGVKVSIIEPGNFKTGIT 188
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 42/195 (21%), Positives = 68/195 (34%), Gaps = 35/195 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGA-EAVQVLKDRASTVPFAIQA 244
VA+VTGA K +G I ++L + GY + + + A L ++ +QA
Sbjct: 1 AVALVTGAAKRIGRAIAEALAAE--GYRVVVHYNRSEAEAQRLKDELNALRNSA-VLVQA 57
Query: 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVN----------LSSSAGHLSQITNLELKKRL 294
+ + LV F +VN S +++ + LK
Sbjct: 58 DLSDFAACADLVAAAFRAFGRCD---VLVNNASAFYPTPLGQGSEDAWAELFGINLKAPY 114
Query: 295 -------RQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDC 346
R+L + +NI A + AY +SK + LTR
Sbjct: 115 LLIQAFARRLAGSRNGSIINIID----AMTDRPLTGYFAYCMSKAALEGLTRS----AAL 166
Query: 347 ELGNQDKVINAVHPG 361
EL +V N + PG
Sbjct: 167 ELAPNIRV-NGIAPG 180
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARDKKKGAEAVQVLKD 233
V +VTGAN GLG I + L + D + L R+ ++ A + L
Sbjct: 3 VVLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLA 52
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+AY+ SK V LTR CE + +NAV PGYV T M
Sbjct: 152 TAYSASKAAVISLTR----SLACEWAAKGIRVNAVLPGYVRTQM 191
|
Length = 520 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 45/211 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK 246
R ++TG ++GLG I L E+ I ++ + K+ + + + +Q
Sbjct: 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVH 61
Query: 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLS------QITNLELKKRLR-QLRE 299
+ TN+ ++ + + ++L ++AG ++ + + EL + L
Sbjct: 62 ELETNFNEILS------SIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLA 115
Query: 300 P---------------VSLRSLNITK---EHPRAHVAKGWPDSAYAVSKIGVNLLTR--- 338
P V R +NI+ ++P GW SAY SK G+++ T+
Sbjct: 116 PMILTSTFMKHTKDWKVDKRVINISSGAAKNPY----FGW--SAYCSSKAGLDMFTQTVA 169
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
Q+ + E K++ A PG + TNM +
Sbjct: 170 TEQE--EEEYPV--KIV-AFSPGVMDTNMQA 195
|
Length = 251 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 61/242 (25%), Positives = 82/242 (33%), Gaps = 95/242 (39%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK---------- 232
D S + AVVTGA+ GLG G+ + L + L R++ KG AV ++
Sbjct: 11 DLSGKRAVVTGASDGLGLGLARRLAAA-GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSL 69
Query: 233 ---DRASTVPFA-----IQAEKT---IL------------------------TNYLGLVR 257
D +S A ++AE +L TN+LG
Sbjct: 70 RALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFA 129
Query: 258 TCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316
L PLLR ARV + SS A R ++ LN
Sbjct: 130 LTAHLLPLLRAGRARVTSQSSIAAR----------------RGAINWDDLN--------- 164
Query: 317 VAKGWPDS-----AYAVSKIGVNLLTRIYQKKFDCELGNQDK------VINAVHPGYVAT 365
W S AY+ SKI V L F EL + + N HPG T
Sbjct: 165 ----WERSYAGMRAYSQSKIAVGL--------FALELDRRSRAAGWGITSNLAHPGVAPT 212
Query: 366 NM 367
N+
Sbjct: 213 NL 214
|
Length = 313 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 47/206 (22%)
Query: 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYL--TARDKKKGAE-------AVQV-LKD 233
S RV +TG +G+G + D + + A KK AE +VQ + D
Sbjct: 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITD 326
Query: 234 RASTVPFAIQAEK-----TILTNYLGLVRTCVFLFPLLRRHARV------VNLSSSAGHL 282
A+ Q + +L N G+ P L + A VNLS G
Sbjct: 327 EAAVESAFAQIQARWGRLDVLVNNAGIAEV---FKPSLEQSAEDFTRVYDVNLS---GAF 380
Query: 283 SQITNLELKKRLRQLREP---VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339
+ + R + + V+L S+ P + AY SK V +L+R
Sbjct: 381 ACA-----RAAARLMSQGGVIVNLGSIASLLALPPRN--------AYCASKAAVTMLSR- 426
Query: 340 YQKKFDCELGNQDKVINAVHPGYVAT 365
CE +N V PGY+ T
Sbjct: 427 ---SLACEWAPAGIRVNTVAPGYIET 449
|
Length = 520 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 79/224 (35%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-------KKKGAEAVQ-------- 229
+VA++TG +G+G I ++ + L ++KG ++
Sbjct: 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQ 65
Query: 230 ----------------VLKDRAS---TVPF----AIQAEKTILTNYLGLVRTCVFLFPLL 266
VL + A +PF + K I N G + T PLL
Sbjct: 66 VKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLL 125
Query: 267 R--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+ ++ +VN++S+AG A+G +
Sbjct: 126 KLSKNGAIVNIASNAG---------------------------------IGTAAEG--TT 150
Query: 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
YA++K G+ +LTR + ELG +NAV PG+V T+M+
Sbjct: 151 FYAITKAGIIILTR----RLAFELGKYGIRVNAVAPGWVETDMT 190
|
Length = 255 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 49/200 (24%), Positives = 67/200 (33%), Gaps = 35/200 (17%)
Query: 190 VVTGANKGLGFGIVKSLCEQF----------DGYIYLTARDKKKGAEAVQVLKDRAST-- 237
V+TGA G+G L E + + + A A+ + R S
Sbjct: 3 VITGAASGIG-AATAELLEDAGHTVIGIDLREADVIADLSTPEGRAAAIADVLARCSGVL 61
Query: 238 --------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHA--RVVNLSSSAGHLSQITN 287
V A + NY GL L P LR+ V +SS AG
Sbjct: 62 DGLVNCAGVGGTTVAGLVLKVNYFGLRALMEALLPRLRKGHGPAAVVVSSIAGAGWAQDK 121
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCE 347
LEL K L E + +L P AYA SK + + TR +
Sbjct: 122 LELAKALAAGTEARA-VALAEHAGQP--------GYLAYAGSKEALTVWTRRRAATWLYG 172
Query: 348 LGNQDKVINAVHPGYVATNM 367
G + +N V PG V T +
Sbjct: 173 AGVR---VNTVAPGPVETPI 189
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 48/222 (21%), Positives = 73/222 (32%), Gaps = 73/222 (32%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKG---------------AEAV 228
S +VA VTGA++G+G I L + G + + A+ +G AE +
Sbjct: 2 SGKVAFVTGASRGIGRAIALRLAK--AGATVVVAAKTASEGDNGSAKSLPGTIEETAEEI 59
Query: 229 QVLKDRASTVPFAIQA------------EKT--------ILTNYLGLVRTCVFL------ 262
+ +A I E T IL N G + +
Sbjct: 60 EAAGGQA----LPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKR 115
Query: 263 FPLLRRH-ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
F L++R R L S A L + + LNI+ P +
Sbjct: 116 FDLMQRVNLRGTYLLSQAA-------------LPHMVKAGQGHILNIS---PPLSLRPAR 159
Query: 322 PDSAYAVSKIGVNLLTRIYQKKFDC--ELGNQDKVINAVHPG 361
D AYA K G++ LT EL +N++ P
Sbjct: 160 GDVAYAAGKAGMSRLTL------GLAAELRRHGIAVNSLWPS 195
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 46/226 (20%), Positives = 70/226 (30%), Gaps = 85/226 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARD---------KKKGAEAV-------- 228
+VA+VTGA++G+G I ++L GY + L R+ EAV
Sbjct: 1 KVALVTGASRGIGIEIARALARD--GYRVSLGLRNPEDLAALSASGGDVEAVPYDARDPE 58
Query: 229 --QVLKDRASTVPFAIQA---------------------EKTILTNYLGLVRTCVFLFPL 265
+ L D I E N + L P
Sbjct: 59 DARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAELTRALLPA 118
Query: 266 LRRHA--RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD 323
LR RVV L+S +G KR+
Sbjct: 119 LREAGSGRVVFLNSLSG-----------KRVLAGN------------------------- 142
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+ Y+ SK + L ++ E + ++AV PG+V T M+
Sbjct: 143 AGYSASKFALRALAHALRQ----EGWDHGVRVSAVCPGFVDTPMAQ 184
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 40/204 (19%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA-VQVLKDRASTVPFAIQAE 245
+VA+VTG KG+G I +L ++ + + K+ AE V L V +A+QA+
Sbjct: 7 KVAIVTGGAKGIGKAITVALAQE-GAKVVINYNSSKEAAENLVNELGKEGHDV-YAVQAD 64
Query: 246 KT--------------------ILTNYLGLVRTCVFLFPLLRRHARV--VNLSSSAGHLS 283
+ IL N G+ R F RV VNLSS S
Sbjct: 65 VSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTS 124
Query: 284 QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK 343
+ L + E R ++I+ + A G+ + Y+ +K G+ T K
Sbjct: 125 AV--------LPYITEAEEGRIISISSIIGQ---AGGFGQTNYSAAKAGMLGFT----KS 169
Query: 344 FDCELGNQDKVINAVHPGYVATNM 367
EL + +NA+ PG++ T M
Sbjct: 170 LALELAKTNVTVNAICPGFIDTEM 193
|
Length = 247 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 42/203 (20%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---RASTVPFAI--- 242
A+VTGA++G+G I L ++ I ++ E V+ LK +A V +
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDR 60
Query: 243 --------QAEKT-----ILTNYLGLVRTCVFLFPLLRRHARVVNLS-SSAGHLSQ-ITN 287
+ E+ IL N G+ R + + V++ + + +L+Q +
Sbjct: 61 EDVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLR 120
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVA--KGWPDSA-YAVSKIGVNLLTRIYQKKF 344
+ +K+R S R +NI+ V G A YA SK GV T+ K
Sbjct: 121 IMIKQR--------SGRIINISS------VVGLMGNAGQANYAASKAGVIGFTKSLAK-- 164
Query: 345 DCELGNQDKVINAVHPGYVATNM 367
EL +++ +NAV PG++ T+M
Sbjct: 165 --ELASRNITVNAVAPGFIDTDM 185
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| KOG1200|consensus | 256 | 99.98 | ||
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.97 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.96 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.96 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.96 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.96 | |
| KOG0725|consensus | 270 | 99.96 | ||
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.96 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.96 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.96 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.96 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.95 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.95 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.95 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.95 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.95 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.95 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.95 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.95 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.95 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.95 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.94 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.94 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.94 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.94 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.94 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.94 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.94 | |
| KOG1207|consensus | 245 | 99.94 | ||
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.93 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.93 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.93 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.93 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.93 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.93 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.93 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.93 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.93 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.93 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.92 | |
| KOG1205|consensus | 282 | 99.92 | ||
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.92 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.92 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.92 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.92 | |
| KOG1201|consensus | 300 | 99.92 | ||
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.92 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.92 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.92 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.92 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.92 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.91 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.91 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.91 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.9 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.9 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.9 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.9 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.9 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.9 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.9 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.9 | |
| KOG1208|consensus | 314 | 99.9 | ||
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.89 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.89 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.89 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.89 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.89 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.89 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.89 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.89 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.88 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.88 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.88 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.88 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| KOG1611|consensus | 249 | 99.88 | ||
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.87 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.87 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.87 | |
| KOG4169|consensus | 261 | 99.87 | ||
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.87 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.87 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.87 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.87 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.87 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.86 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.86 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.86 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.86 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.86 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.85 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.85 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.85 | |
| KOG1199|consensus | 260 | 99.84 | ||
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.84 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.84 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.83 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.83 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.82 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| KOG1610|consensus | 322 | 99.82 | ||
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| KOG1209|consensus | 289 | 99.8 | ||
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.8 | |
| KOG1014|consensus | 312 | 99.8 | ||
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.8 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.79 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.79 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.78 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.78 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.78 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.77 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.76 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.74 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.74 | |
| KOG1210|consensus | 331 | 99.74 | ||
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.73 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.68 | |
| KOG1204|consensus | 253 | 99.66 | ||
| KOG1478|consensus | 341 | 99.62 | ||
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.56 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.52 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.45 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.37 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.36 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.35 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.28 | |
| KOG1502|consensus | 327 | 99.15 | ||
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.15 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.13 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.12 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.11 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.09 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.06 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.02 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.02 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 98.99 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 98.99 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 98.98 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 98.97 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 98.95 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.92 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 98.88 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 98.88 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 98.86 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 98.84 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 98.84 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 98.83 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.83 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 98.8 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 98.75 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 98.74 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 98.72 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 98.72 | |
| KOG4022|consensus | 236 | 98.72 | ||
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 98.67 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 98.67 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 98.65 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 98.61 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 98.58 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 98.56 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 98.54 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 98.54 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 98.54 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 98.51 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 98.51 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 98.5 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 98.48 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.43 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 98.43 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 98.41 | |
| KOG1429|consensus | 350 | 98.41 | ||
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 98.39 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 98.33 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 98.32 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 98.27 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 98.25 | |
| KOG1371|consensus | 343 | 98.15 | ||
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 98.15 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 98.13 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 98.11 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 98.08 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 98.06 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 98.01 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 98.0 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 97.86 | |
| KOG1430|consensus | 361 | 97.85 | ||
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 97.82 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 97.8 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 97.77 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 97.71 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.4 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.37 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 97.32 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 97.32 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.28 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 97.26 | |
| KOG0747|consensus | 331 | 97.21 | ||
| KOG1610|consensus | 322 | 97.12 | ||
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.06 | |
| KOG1221|consensus | 467 | 97.06 | ||
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.96 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 96.75 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 96.74 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 96.7 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.67 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.61 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 96.46 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 96.4 | |
| KOG1203|consensus | 411 | 96.38 | ||
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.21 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.18 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.16 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.16 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.16 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.14 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.01 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 95.79 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 95.78 | |
| KOG1431|consensus | 315 | 95.74 | ||
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.71 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 95.39 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.36 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.3 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 95.3 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.27 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 95.26 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.18 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.18 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.07 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.04 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.89 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.86 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.81 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.76 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.65 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.64 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 94.52 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 94.23 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.15 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 94.15 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.01 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 94.01 | |
| KOG0023|consensus | 360 | 93.93 | ||
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 93.9 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.82 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.71 | |
| PLN00106 | 323 | malate dehydrogenase | 93.66 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 93.51 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 93.49 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.49 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 93.4 | |
| PLN02494 | 477 | adenosylhomocysteinase | 93.36 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.35 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 93.28 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.22 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.06 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 92.95 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.9 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 92.88 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 92.83 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 92.76 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.71 | |
| KOG1202|consensus | 2376 | 92.68 | ||
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.52 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.47 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 92.39 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 92.32 | |
| KOG2774|consensus | 366 | 92.32 | ||
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.26 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.19 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 92.14 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 92.1 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 92.06 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 91.88 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 91.73 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 91.61 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 91.55 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 91.38 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 91.36 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 91.19 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.14 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.06 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 90.99 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.97 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 90.93 | |
| KOG4039|consensus | 238 | 90.92 | ||
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 90.81 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 90.79 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 90.75 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.74 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 90.71 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 90.6 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.37 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 90.3 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.28 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 90.19 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 90.1 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 90.08 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.07 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 90.03 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.0 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 89.93 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 89.91 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 89.88 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 89.79 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 89.73 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 89.68 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 89.56 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.27 | |
| KOG2865|consensus | 391 | 89.26 | ||
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 89.21 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 89.17 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.13 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 88.83 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.8 | |
| KOG0069|consensus | 336 | 88.79 | ||
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 88.7 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.14 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.12 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 88.11 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.09 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 88.05 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 88.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 87.98 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 87.97 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 87.96 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 87.8 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 87.78 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 87.77 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 87.73 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 87.66 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 87.49 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.45 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 87.36 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.22 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 87.17 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 87.12 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.03 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 86.86 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 86.78 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 86.71 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 86.64 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 86.4 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 86.32 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.07 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 86.04 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.02 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 85.7 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 85.7 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 85.6 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.49 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 85.41 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.33 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.06 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.03 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.01 | |
| KOG1372|consensus | 376 | 84.94 | ||
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 84.74 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.64 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 84.58 | |
| PF12076 | 164 | Wax2_C: WAX2 C-terminal domain; InterPro: IPR02194 | 84.52 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 84.43 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 84.33 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 84.32 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.3 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 84.28 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 84.27 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.25 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.08 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 84.07 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.06 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.02 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 84.01 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 83.96 | |
| KOG1197|consensus | 336 | 83.96 | ||
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 83.95 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 83.84 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 83.81 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 83.8 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 83.78 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 83.73 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 83.61 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 83.59 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 83.57 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 83.45 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 83.4 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.34 | |
| KOG1196|consensus | 343 | 83.33 | ||
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.21 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 83.18 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.99 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 82.98 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 82.97 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 82.87 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.81 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 82.74 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.7 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 82.68 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 82.63 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 82.57 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 82.26 | |
| KOG1198|consensus | 347 | 82.14 | ||
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 82.14 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 82.1 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 81.97 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 81.64 |
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=250.39 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=156.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.+..|+++||||++|||++++..|+++ |++|++++++...+++++..+...
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~-Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g 89 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKK-GARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG 89 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhc-CcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcC
Confidence 357799999999999999999999999 999999999988888877777652
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhh--hc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLL--RR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l--~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
.......++|+..+.+|+.|.|.++|++...| .+ +.+|||+||+.|.....
T Consensus 90 ~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~---------- 159 (256)
T KOG1200|consen 90 TPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNF---------- 159 (256)
T ss_pred CCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccc----------
Confidence 11123458999999999999999999999874 22 24999999999843322
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC--
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-- 373 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-- 373 (484)
++..|++||+++.+|+|+.|+|++++ |||||+|+||+|.|||+...++
T Consensus 160 --------------------------GQtnYAAsK~GvIgftktaArEla~k----nIrvN~VlPGFI~tpMT~~mp~~v 209 (256)
T KOG1200|consen 160 --------------------------GQTNYAASKGGVIGFTKTAARELARK----NIRVNVVLPGFIATPMTEAMPPKV 209 (256)
T ss_pred --------------------------cchhhhhhcCceeeeeHHHHHHHhhc----CceEeEeccccccChhhhhcCHHH
Confidence 23889999999999999999999998 9999999999999999988765
Q ss_pred -------------CCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 374 -------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 374 -------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
+++||+|+.++||+|+.++|+||+.+ .++|++
T Consensus 210 ~~ki~~~iPmgr~G~~EevA~~V~fLAS~~ssYiTG~t~--evtGGl 254 (256)
T KOG1200|consen 210 LDKILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTL--EVTGGL 254 (256)
T ss_pred HHHHHccCCccccCCHHHHHHHHHHHhccccccccceeE--EEeccc
Confidence 89999999999999999999999998 556554
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=246.42 Aligned_cols=183 Identities=19% Similarity=0.164 Sum_probs=149.4
Q ss_pred CCCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-------------------------
Q psy8786 181 SVDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD------------------------- 233 (484)
Q Consensus 181 ~~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~------------------------- 233 (484)
+..|+||+++||||+ +|||+++|++|+++ |++|++++|+++ .++..+++..
T Consensus 2 ~~~l~~k~~lItGas~~~gIG~a~a~~la~~-G~~Vi~~~r~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 2 SGILSGKKIVVMGVANKRSIAWGCAQAIKDQ-GATVIYTYQNDR-MKKSLQKLVDEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred ccccCCCEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEecCchH-HHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 455789999999999 89999999999999 899999998732 2222222211
Q ss_pred c-----------CC----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHH
Q psy8786 234 R-----------AS----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 234 ~-----------~~----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
. +. .....++|+..+++|+.+++.++++++|+|+++|+||+++|.++. ..+.
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~------ 153 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIPN------ 153 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCCc------
Confidence 0 11 112457899999999999999999999999888999999998873 2222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 154 -------------------------------~~~Y~asKaal~~l~~~la~el~~~----gI~vn~i~PG~v~T~~~~~~ 198 (252)
T PRK06079 154 -------------------------------YNVMGIAKAALESSVRYLARDLGKK----GIRVNAISAGAVKTLAVTGI 198 (252)
T ss_pred -------------------------------chhhHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCcccccccccC
Confidence 1789999999999999999999887 99999999999999975321
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+.||+++.+++++|+.+ .+||++.
T Consensus 199 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i--~vdgg~~ 250 (252)
T PRK06079 199 KGHKDLLKESDSRTVDGVGVTIEEVGNTAAFLLSDLSTGVTGDII--YVDKGVH 250 (252)
T ss_pred CChHHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccccccEE--EeCCcee
Confidence 1278999999999999999999999998 6777764
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=247.68 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=148.1
Q ss_pred CCCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHH---HHHHHHHhc----------------------
Q psy8786 182 VDPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGA---EAVQVLKDR---------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~---~~~~~l~~~---------------------- 234 (484)
..|+||++|||||++ |||+++|++|+++ |++|++++|+++..+ +..+++...
T Consensus 3 ~~l~~k~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999997 9999999999999 899999998753222 221111100
Q ss_pred ------------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 ------------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 ------------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
+.. ..+.++|+.++++|+.+++.++++++|+|+++|+||+++|.++. ..+.
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~------ 155 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMPN------ 155 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCCc------
Confidence 111 12358899999999999999999999999878999999998773 2222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+..|++||+|+.+|+|+||.|++++ |||||+|+||+|+|++....
T Consensus 156 -------------------------------~~~Y~asKaAl~~l~r~la~el~~~----gIrVn~v~PG~i~T~~~~~~ 200 (271)
T PRK06505 156 -------------------------------YNVMGVAKAALEASVRYLAADYGPQ----GIRVNAISAGPVRTLAGAGI 200 (271)
T ss_pred -------------------------------cchhhhhHHHHHHHHHHHHHHHhhc----CeEEEEEecCCccccccccC
Confidence 1689999999999999999999887 99999999999999974311
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~peeva~~~~fL~s~~~~~itG~~i--~vdgG~~ 252 (271)
T PRK06505 201 GDARAIFSYQQRNSPLRRTVTIDEVGGSALYLLSDLSSGVTGEIH--FVDSGYN 252 (271)
T ss_pred cchHHHHHHHhhcCCccccCCHHHHHHHHHHHhCccccccCceEE--eecCCcc
Confidence 1268999999999999999999999998 7788774
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=246.32 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=152.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARA-GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999999 899999999987766655544210
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccc-cccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHL-SQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~-~~~~~~~~~~~~ 294 (484)
+ ......++|+..+++|+.+++.++++++|.|++. |+||++||.++.. .+.
T Consensus 83 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~--------- 153 (263)
T PRK08339 83 IGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPN--------- 153 (263)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCc---------
Confidence 0 1123458999999999999999999999999653 8999999988742 222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|+++|+|+++|++++++|++++ |||||+|+||+|+|++....
T Consensus 154 ----------------------------~~~y~asKaal~~l~~~la~el~~~----gIrVn~v~PG~v~T~~~~~~~~~ 201 (263)
T PRK08339 154 ----------------------------IALSNVVRISMAGLVRTLAKELGPK----GITVNGIMPGIIRTDRVIQLAQD 201 (263)
T ss_pred ----------------------------chhhHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeCcCccHHHHHHHHh
Confidence 1689999999999999999999887 99999999999999974210
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .+||++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~--~vdgG~~~ 260 (263)
T PRK08339 202 RAKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFLASDLGSYINGAMI--PVDGGRLN 260 (263)
T ss_pred hhhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHHhcchhcCccCceE--EECCCccc
Confidence 1167999999999999999999999998 67777643
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=242.79 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=147.5
Q ss_pred CCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh----c----------------------
Q psy8786 183 DPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----R---------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~----~---------------------- 234 (484)
.++||++|||||++ |||+++|++|+++ |++|++++|+++ .++..+++.. .
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~-G~~v~~~~r~~~-~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKH-GAELWFTYQSEV-LEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHc-CCEEEEEeCchH-HHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH
Confidence 35899999999997 9999999999998 899999988742 2222222210 0
Q ss_pred ------------CC----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 ------------AS----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 ------------~~----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
.. .+...++|+..+++|+.+++.+++++.|.|+++|+||+++|.++. ..+.
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~------ 156 (260)
T PRK06603 83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPN------ 156 (260)
T ss_pred HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCCc------
Confidence 11 022457899999999999999999999999888999999998773 2222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++|+.|++++ |||||+|+||+|+|++....
T Consensus 157 -------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrVn~v~PG~v~T~~~~~~ 201 (260)
T PRK06603 157 -------------------------------YNVMGVAKAALEASVKYLANDMGEN----NIRVNAISAGPIKTLASSAI 201 (260)
T ss_pred -------------------------------ccchhhHHHHHHHHHHHHHHHhhhc----CeEEEEEecCcCcchhhhcC
Confidence 1689999999999999999999887 99999999999999974311
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 202 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i--~vdgG~~~ 254 (260)
T PRK06603 202 GDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGVTGEIH--YVDCGYNI 254 (260)
T ss_pred CCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCcccccCcceEE--EeCCcccc
Confidence 1268999999999999999999999998 77888754
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=244.79 Aligned_cols=182 Identities=20% Similarity=0.177 Sum_probs=147.9
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh-c----------------------
Q psy8786 183 DPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD-R---------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~-~---------------------- 234 (484)
.|+||++|||||+ +|||+++|++|+++ |++|++++|+++ .+++..+++.. .
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQ-GAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 3578999999997 89999999999999 899999999852 23322222110 0
Q ss_pred -----------CC----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -----------AS----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -----------~~----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+. .....++|+.++++|+.|++.++++++|.|+++|+||++||.++. ..+.
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~------- 153 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVPH------- 153 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCCc-------
Confidence 11 112358899999999999999999999999888999999998773 2222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+.+|+++|+.|++++ |||||+|+||+|+|++....
T Consensus 154 ------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrVn~v~PG~v~T~~~~~~~ 199 (274)
T PRK08415 154 ------------------------------YNVMGVAKAALESSVRYLAVDLGKK----GIRVNAISAGPIKTLAASGIG 199 (274)
T ss_pred ------------------------------chhhhhHHHHHHHHHHHHHHHhhhc----CeEEEEEecCccccHHHhccc
Confidence 1689999999999999999999887 99999999999999874310
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 200 ~~~~~~~~~~~~~pl~r~~~pedva~~v~fL~s~~~~~itG~~i--~vdGG~~ 250 (274)
T PRK08415 200 DFRMILKWNEINAPLKKNVSIEEVGNSGMYLLSDLSSGVTGEIH--YVDAGYN 250 (274)
T ss_pred hhhHHhhhhhhhCchhccCCHHHHHHHHHHHhhhhhhcccccEE--EEcCccc
Confidence 1268999999999999999999999998 7888875
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=239.78 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=149.4
Q ss_pred CCCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchh---HHHHHHHHHhc---------------------
Q psy8786 181 SVDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKK---GAEAVQVLKDR--------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~---~~~~~~~l~~~--------------------- 234 (484)
.++++||++|||||+ +|||+++|++|+++ |++|++++|+.+. +++..+++...
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~-G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRAL-GAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHH
Confidence 456899999999998 59999999999999 8999999998542 23322222110
Q ss_pred -------------CC----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHH
Q psy8786 235 -------------AS----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 235 -------------~~----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
+. ...+.++|+.++++|+.|++.++++++|.|+++|+||++||.++. ..+.
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~----- 158 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVEN----- 158 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCcc-----
Confidence 11 012457899999999999999999999999888999999998763 2222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|+.+|+++|+.|++++ |||||+|+||+|+|++.+.
T Consensus 159 --------------------------------~~~Y~asKaal~~l~~~la~el~~~----gI~Vn~v~PG~v~T~~~~~ 202 (258)
T PRK07533 159 --------------------------------YNLMGPVKAALESSVRYLAAELGPK----GIRVHAISPGPLKTRAASG 202 (258)
T ss_pred --------------------------------chhhHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCCcCChhhhc
Confidence 1689999999999999999999887 9999999999999998542
Q ss_pred C-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 M-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 203 ~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~L~s~~~~~itG~~i--~vdgg~~ 255 (258)
T PRK07533 203 IDDFDALLEDAAERAPLRRLVDIDDVGAVAAFLASDAARRLTGNTL--YIDGGYH 255 (258)
T ss_pred cCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhChhhccccCcEE--eeCCccc
Confidence 1 1268999999999999999999999998 6777764
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=240.58 Aligned_cols=186 Identities=25% Similarity=0.248 Sum_probs=153.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
..|.||++|||||++|||+++|++|+++ |++|++++|+++.+++...++...
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 5689999999999999999999999999 999999999999887776665421
Q ss_pred ----------------------CCCCccHHHHHHHHHhhhHH-HHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHH
Q psy8786 235 ----------------------ASTVPFAIQAEKTILTNYLG-LVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLE 289 (484)
Q Consensus 235 ----------------------~~~~~~~~~~~~~~~vN~~g-~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~ 289 (484)
...+.+.+.|+.++++|+.| .+.+.+++.+++++ +|.|+++||.++......
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~--- 159 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPG--- 159 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC---
Confidence 12334568999999999995 67777777777766 579999999887432111
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
.+ ..|++||+|+.+|+|++|.||+++ |||||+|+||.|.|++..
T Consensus 160 -------------------------------~~-~~Y~~sK~al~~ltr~lA~El~~~----gIRvN~v~PG~i~T~~~~ 203 (270)
T KOG0725|consen 160 -------------------------------SG-VAYGVSKAALLQLTRSLAKELAKH----GIRVNSVSPGLVKTSLRA 203 (270)
T ss_pred -------------------------------Cc-ccchhHHHHHHHHHHHHHHHHhhc----CcEEEEeecCcEeCCccc
Confidence 01 589999999999999999999998 999999999999999721
Q ss_pred C------------------C----CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 370 F------------------M----GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 370 ~------------------~----~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. . ..+.|+|+++.+.||++++++|++|+.+ .+||++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~fla~~~asyitG~~i--~vdgG~~~ 263 (270)
T KOG0725|consen 204 AGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLASDDASYITGQTI--IVDGGFTV 263 (270)
T ss_pred cccccchhhHHhhhhccccccccCCccCHHHHHHhHHhhcCcccccccCCEE--EEeCCEEe
Confidence 0 0 1179999999999999999889999999 78888765
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=244.58 Aligned_cols=184 Identities=13% Similarity=0.146 Sum_probs=146.5
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecCch-------------------------------------
Q psy8786 182 VDPSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARDKK------------------------------------- 222 (484)
Q Consensus 182 ~~L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~~~------------------------------------- 222 (484)
++|+||++||||| ++|||+++|++|+++ |++|++ +|+.+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~-Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAA-GAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHC-CCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 5689999999999 899999999999999 899888 33211
Q ss_pred -----------------------hHHHHHHHHHhc---------CC----------CCccHHHHHHHHHhhhHHHHHHHH
Q psy8786 223 -----------------------KGAEAVQVLKDR---------AS----------TVPFAIQAEKTILTNYLGLVRTCV 260 (484)
Q Consensus 223 -----------------------~~~~~~~~l~~~---------~~----------~~~~~~~~~~~~~vN~~g~~~l~~ 260 (484)
..+++.+++.+. +. ...+.++|+.++++|+.+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 112222222221 11 112348999999999999999999
Q ss_pred HHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHH
Q psy8786 261 FLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339 (484)
Q Consensus 261 allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~ 339 (484)
+++|.|+++|+||++||.++. ..+.. ...|++||+|+++|+++
T Consensus 163 ~~~p~m~~~G~II~isS~a~~~~~p~~------------------------------------~~~Y~asKaAl~~l~~~ 206 (303)
T PLN02730 163 HFGPIMNPGGASISLTYIASERIIPGY------------------------------------GGGMSSAKAALESDTRV 206 (303)
T ss_pred HHHHHHhcCCEEEEEechhhcCCCCCC------------------------------------chhhHHHHHHHHHHHHH
Confidence 999999888999999998873 22211 14799999999999999
Q ss_pred HHHHhhh-hcCCCCeEEEEEeCCcccCCCccCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccc
Q psy8786 340 YQKKFDC-ELGNQDKVINAVHPGYVATNMSSFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINT 401 (484)
Q Consensus 340 LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~ 401 (484)
|+.|+++ + |||||+|+||+|+|+|.... ...+|+|+++.++||+++.+.+++|+.+
T Consensus 207 la~El~~~~----gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l-- 280 (303)
T PLN02730 207 LAFEAGRKY----KIRVNTISAGPLGSRAAKAIGFIDDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATI-- 280 (303)
T ss_pred HHHHhCcCC----CeEEEEEeeCCccCchhhcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE--
Confidence 9999975 5 99999999999999986421 1268999999999999999999999998
Q ss_pred cccceeec
Q psy8786 402 FIPAIYTV 409 (484)
Q Consensus 402 ~~~g~~~~ 409 (484)
.++|++..
T Consensus 281 ~vdGG~~~ 288 (303)
T PLN02730 281 YVDNGLNA 288 (303)
T ss_pred EECCCccc
Confidence 67777754
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=237.35 Aligned_cols=187 Identities=20% Similarity=0.221 Sum_probs=153.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEA-GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999987776665554321
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ......++|+..+++|+.+++.+++++.+.|.+ +++||++||..+......
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 155 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVP-------- 155 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCC--------
Confidence 0 011234789999999999999999999999854 378999999876321100
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
.....|++||+|++++++++++|++++ ||+||+|+||+|+|++....
T Consensus 156 --------------------------~~~~~Y~asKaal~~~~~~la~e~~~~----gI~vn~i~PG~v~t~~~~~~~~~ 205 (253)
T PRK05867 156 --------------------------QQVSHYCASKAAVIHLTKAMAVELAPH----KIRVNSVSPGYILTELVEPYTEY 205 (253)
T ss_pred --------------------------CCccchHHHHHHHHHHHHHHHHHHhHh----CeEEEEeecCCCCCcccccchHH
Confidence 011689999999999999999999987 99999999999999986432
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+.||+++.++++||+.+ .+||++..
T Consensus 206 ~~~~~~~~~~~r~~~p~~va~~~~~L~s~~~~~~tG~~i--~vdgG~~~ 252 (253)
T PRK05867 206 QPLWEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDI--VIDGGYTC 252 (253)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCcCCCeE--EECCCccC
Confidence 1278999999999999999999999999 78888754
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=238.31 Aligned_cols=183 Identities=19% Similarity=0.222 Sum_probs=145.7
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCch--hHHHHHHHHHhc-----------------------
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKK--KGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~--~~~~~~~~l~~~----------------------- 234 (484)
++++||+++||||+ +|||+++|++|+++ |++|++++|+.+ +.++..+++.+.
T Consensus 2 ~~l~~k~~lItGas~~~GIG~aia~~la~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 80 (258)
T PRK07370 2 LDLTGKKALVTGIANNRSIAWGIAQQLHAA-GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFET 80 (258)
T ss_pred cccCCcEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHH
Confidence 35789999999986 89999999999999 899988865432 122222222110
Q ss_pred ---------------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchH
Q psy8786 235 ---------------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 ---------------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~ 288 (484)
+.. ..+.++|+..+++|+.+++.++++++|.|+++|+||++||..+. ..+.
T Consensus 81 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~--- 157 (258)
T PRK07370 81 IKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIPN--- 157 (258)
T ss_pred HHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCcc---
Confidence 111 11347899999999999999999999999888999999998773 2222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+.+|+++|+.|++++ ||+||+|+||+|+|++.
T Consensus 158 ----------------------------------~~~Y~asKaal~~l~~~la~el~~~----gI~Vn~i~PG~v~T~~~ 199 (258)
T PRK07370 158 ----------------------------------YNVMGVAKAALEASVRYLAAELGPK----NIRVNAISAGPIRTLAS 199 (258)
T ss_pred ----------------------------------cchhhHHHHHHHHHHHHHHHHhCcC----CeEEEEEecCcccCchh
Confidence 2789999999999999999999877 99999999999999975
Q ss_pred cCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 369 SFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 369 ~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
... ...+|+|+++.+.||+++.+++++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i--~vdgg~~ 254 (258)
T PRK07370 200 SAVGGILDMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTI--YVDAGYC 254 (258)
T ss_pred hccccchhhhhhhhhcCCcCcCCCHHHHHHHHHHHhChhhccccCcEE--EECCccc
Confidence 321 1257999999999999999999999998 6777764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=238.80 Aligned_cols=184 Identities=16% Similarity=0.139 Sum_probs=149.2
Q ss_pred CCCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCc---hhHHHHHHHHHhc---------------------
Q psy8786 181 SVDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDK---KKGAEAVQVLKDR--------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~---~~~~~~~~~l~~~--------------------- 234 (484)
.++++||+++||||+ +|||+++|++|+++ |++|++++|+. +.+++..+++...
T Consensus 2 ~~~~~~k~~lItGa~~s~GIG~aia~~la~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 2 MLSLEGKTYVVMGVANKRSIAWGIARSLHNA-GAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHH
Confidence 356899999999997 89999999999999 89999987753 3344443333110
Q ss_pred ---------------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchH
Q psy8786 235 ---------------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 ---------------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~ 288 (484)
+.. ....++|+..+++|+.+++.++++++|.|+++|+||++||.++. ..+.
T Consensus 81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~--- 157 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQN--- 157 (257)
T ss_pred HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCC---
Confidence 100 12347899999999999999999999999888999999999873 2222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.
T Consensus 158 ----------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrvn~v~PG~v~T~~~ 199 (257)
T PRK08594 158 ----------------------------------YNVMGVAKASLEASVKYLANDLGKD----GIRVNAISAGPIRTLSA 199 (257)
T ss_pred ----------------------------------CchhHHHHHHHHHHHHHHHHHhhhc----CCEEeeeecCcccCHhH
Confidence 1689999999999999999999887 99999999999999874
Q ss_pred cCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 369 SFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 369 ~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
... ...+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~--~~dgg~~ 254 (257)
T PRK08594 200 KGVGGFNSILKEIEERAPLRRTTTQEEVGDTAAFLFSDLSRGVTGENI--HVDSGYH 254 (257)
T ss_pred hhhccccHHHHHHhhcCCccccCCHHHHHHHHHHHcCcccccccceEE--EECCchh
Confidence 211 1268999999999999999999999998 6777764
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=237.14 Aligned_cols=185 Identities=20% Similarity=0.225 Sum_probs=153.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----c----------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----R---------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----~---------------------- 234 (484)
.++++|+++||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 3 ~~l~~k~vlVtGas~gIG~~~a~~l~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 3 NRLAGKVALVTGAAQGIGAAIARAFARE-GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999 89999999998877766665543 0
Q ss_pred -------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. .....++|+.++++|+.+++.++++++|.|++. ++||++||..+......
T Consensus 82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 154 (260)
T PRK07063 82 EAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPG------- 154 (260)
T ss_pred HHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCC-------
Confidence 10 112357899999999999999999999999653 79999999877322111
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+|+.+++++++.|++++ |||||+|+||+|+|++....
T Consensus 155 -----------------------------~~~Y~~sKaa~~~~~~~la~el~~~----gIrvn~v~PG~v~t~~~~~~~~ 201 (260)
T PRK07063 155 -----------------------------CFPYPVAKHGLLGLTRALGIEYAAR----NVRVNAIAPGYIETQLTEDWWN 201 (260)
T ss_pred -----------------------------chHHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEeeCCccChhhhhhhh
Confidence 1689999999999999999999877 99999999999999985321
Q ss_pred -------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~r~~~~~~va~~~~fl~s~~~~~itG~~i--~vdgg~~~ 256 (260)
T PRK07063 202 AQPDPAAARAETLALQPMKRIGRPEEVAMTAVFLASDEAPFINATCI--TIDGGRSV 256 (260)
T ss_pred ccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccccCCcEE--EECCCeee
Confidence 1168999999999999999999999999 77887754
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=235.24 Aligned_cols=184 Identities=19% Similarity=0.189 Sum_probs=146.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHH------------------------HHHhc--
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQ------------------------VLKDR-- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~------------------------~l~~~-- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.. +..+..+ ++.+.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKA-GADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999 899999888642 1111111 11100
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+ ......++|+.++++|+.+++.+++++++.|++ +|+||+++|.++......
T Consensus 83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~---------- 152 (251)
T PRK12481 83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIR---------- 152 (251)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCC----------
Confidence 1 112245889999999999999999999999854 379999999887422111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 153 --------------------------~~~Y~asK~a~~~l~~~la~e~~~~----girvn~v~PG~v~t~~~~~~~~~~~ 202 (251)
T PRK12481 153 --------------------------VPSYTASKSAVMGLTRALATELSQY----NINVNAIAPGYMATDNTAALRADTA 202 (251)
T ss_pred --------------------------CcchHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCCCccCchhhcccChH
Confidence 1689999999999999999999887 99999999999999985422
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+++.||+++.+.+++|+.+ .+||++.
T Consensus 203 ~~~~~~~~~p~~~~~~peeva~~~~~L~s~~~~~~~G~~i--~vdgg~~ 249 (251)
T PRK12481 203 RNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGYTL--AVDGGWL 249 (251)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCceE--EECCCEe
Confidence 1268999999999999999999999998 6777763
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=235.21 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=146.3
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecCc--hhHHHHHHHHHhc-----------------------
Q psy8786 182 VDPSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARDK--KKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~~--~~~~~~~~~l~~~----------------------- 234 (484)
.+++||+++|||| ++|||+++|++|+++ |++|++++|+. +..++..+++...
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~-G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 3 GLLEGKRILVTGVITDSSIAFHVARVAQEQ-GAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred ccccCCEEEEeCCCCcchHHHHHHHHHHHC-CCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999 899999999999998 89999998764 3333333322110
Q ss_pred ------------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHH
Q psy8786 235 ------------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 ------------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
+.. ....+++++++++|+.+++.++++++|.|+++|+||++++......+.
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~~~~------- 154 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVAWPA------- 154 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccccCCc-------
Confidence 111 123478889999999999999999999998889999998654322222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
+..|++||+|+.+|+++|+.|++++ |||||+|+||+|+|++.+..
T Consensus 155 ------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrvn~v~PG~v~T~~~~~~~ 200 (256)
T PRK07889 155 ------------------------------YDWMGVAKAALESTNRYLARDLGPR----GIRVNLVAAGPIRTLAAKAIP 200 (256)
T ss_pred ------------------------------cchhHHHHHHHHHHHHHHHHHhhhc----CeEEEeeccCcccChhhhccc
Confidence 1679999999999999999999887 99999999999999975321
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i--~vdgg~~ 252 (256)
T PRK07889 201 GFELLEEGWDERAPLGWDVKDPTPVARAVVALLSDWFPATTGEIV--HVDGGAH 252 (256)
T ss_pred CcHHHHHHHHhcCccccccCCHHHHHHHHHHHhCcccccccceEE--EEcCcee
Confidence 1268999999999999999999999998 6677764
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=227.57 Aligned_cols=169 Identities=20% Similarity=0.212 Sum_probs=143.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-c---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-R--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-~--------------------------- 234 (484)
++++|+++|||||+|||.++|++|+++ |++|++++|+.+++++.++++.+ .
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~-G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEA-GAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 357899999999999999999999999 99999999999999999998883 1
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHHhhc
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~~~~ 297 (484)
.......++|+.++++|+.|.++.+++++|.|.+ .|.|||+||++| +..+..
T Consensus 82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~----------- 150 (246)
T COG4221 82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGG----------- 150 (246)
T ss_pred ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCC-----------
Confidence 1122345899999999999999999999999964 489999999999 444443
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
..|+++|+++.+|++.|+.|+... +|||.+|+||.|.|.++....
T Consensus 151 --------------------------~vY~ATK~aV~~fs~~LR~e~~g~----~IRVt~I~PG~v~~~~~s~v~~~g~~ 200 (246)
T COG4221 151 --------------------------AVYGATKAAVRAFSLGLRQELAGT----GIRVTVISPGLVETTEFSTVRFEGDD 200 (246)
T ss_pred --------------------------ccchhhHHHHHHHHHHHHHHhcCC----CeeEEEecCceecceecccccCCchh
Confidence 789999999999999999999877 999999999999776543321
Q ss_pred -----------CCCHHhHHHHHHHHHhhhccc
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHF 393 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~ 393 (484)
..+|+|+|+.+.|..+...+.
T Consensus 201 ~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~v 232 (246)
T COG4221 201 ERADKVYKGGTALTPEDIAEAVLFAATQPQHV 232 (246)
T ss_pred hhHHHHhccCCCCCHHHHHHHHHHHHhCCCcc
Confidence 279999999999988655443
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=238.76 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=147.7
Q ss_pred CCCCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCc---------h--------------------------
Q psy8786 180 GSVDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDK---------K-------------------------- 222 (484)
Q Consensus 180 ~~~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~---------~-------------------------- 222 (484)
|..+++||++|||||+ +|||+++|++|+++ |++|++.++.+ +
T Consensus 2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~-Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (299)
T PRK06300 2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEA-GATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA 80 (299)
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHC-CCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence 3567899999999996 99999999999999 89999876321 0
Q ss_pred ------------------------hHHHHHHHHHhc---------C---C-------CCccHHHHHHHHHhhhHHHHHHH
Q psy8786 223 ------------------------KGAEAVQVLKDR---------A---S-------TVPFAIQAEKTILTNYLGLVRTC 259 (484)
Q Consensus 223 ------------------------~~~~~~~~l~~~---------~---~-------~~~~~~~~~~~~~vN~~g~~~l~ 259 (484)
..+++++++.+. + . ...+.++|+.++++|+.|+++++
T Consensus 81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~ 160 (299)
T PRK06300 81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL 160 (299)
T ss_pred hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence 012222222221 1 1 11234899999999999999999
Q ss_pred HHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHH
Q psy8786 260 VFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTR 338 (484)
Q Consensus 260 ~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~ 338 (484)
++++|.|+++|+||+++|..+. ..+.. ...|++||+|+++|++
T Consensus 161 ~a~~p~m~~~G~ii~iss~~~~~~~p~~------------------------------------~~~Y~asKaAl~~lt~ 204 (299)
T PRK06300 161 SHFGPIMNPGGSTISLTYLASMRAVPGY------------------------------------GGGMSSAKAALESDTK 204 (299)
T ss_pred HHHHHHhhcCCeEEEEeehhhcCcCCCc------------------------------------cHHHHHHHHHHHHHHH
Confidence 9999999888999999998773 32221 0379999999999999
Q ss_pred HHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccc
Q psy8786 339 IYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINT 401 (484)
Q Consensus 339 ~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~ 401 (484)
+|+.|++++ +|||||+|+||+|+|++.... ...+|+|+++.++||+++.+.+++|+.+
T Consensus 205 ~la~el~~~---~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i-- 279 (299)
T PRK06300 205 VLAWEAGRR---WGIRVNTISAGPLASRAGKAIGFIERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETL-- 279 (299)
T ss_pred HHHHHhCCC---CCeEEEEEEeCCccChhhhcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE--
Confidence 999999752 299999999999999986421 1268999999999999999999999998
Q ss_pred cccceeec
Q psy8786 402 FIPAIYTV 409 (484)
Q Consensus 402 ~~~g~~~~ 409 (484)
.++|++..
T Consensus 280 ~vdGG~~~ 287 (299)
T PRK06300 280 YVDHGANV 287 (299)
T ss_pred EECCCcce
Confidence 67777644
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=235.07 Aligned_cols=180 Identities=14% Similarity=0.127 Sum_probs=145.2
Q ss_pred CCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 184 PSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++||++|||||++ |||+++|++|+++ |++|++++|+. +.++..+++...
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~-G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHC-CCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 6899999999986 9999999999999 89999998873 222222222110
Q ss_pred -----------CC-----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 -----------AS-----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 -----------~~-----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
+. .....++|+..+++|+.+++.+++++.|.++++|+||++||.++. ..+.
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~------ 155 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPN------ 155 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCC------
Confidence 10 012347899999999999999999999988778999999998763 2222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 156 -------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrVn~i~PG~v~T~~~~~~ 200 (262)
T PRK07984 156 -------------------------------YNVMGLAKASLEANVRYMANAMGPE----GVRVNAISAGPIRTLAASGI 200 (262)
T ss_pred -------------------------------cchhHHHHHHHHHHHHHHHHHhccc----CcEEeeeecCcccchHHhcC
Confidence 1689999999999999999999887 99999999999999864311
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.++||+++.+.+++|+.+ .++|++.
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i--~vdgg~~ 252 (262)
T PRK07984 201 KDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVV--HVDGGFS 252 (262)
T ss_pred CchHHHHHHHHHcCCCcCCCCHHHHHHHHHHHcCcccccccCcEE--EECCCcc
Confidence 1268999999999999999999999998 6777764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=235.21 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=147.4
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCc---hhHHHHHHHHHhc-----------------------
Q psy8786 183 DPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDK---KKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~---~~~~~~~~~l~~~----------------------- 234 (484)
.|+||++|||||+ +|||+++|++|+++ |++|++++|++ +++++..+++...
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~-G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAA-GAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence 4588999999997 89999999999999 89999998863 2333332222100
Q ss_pred -----------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -----------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -----------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+.. ....++|+..+++|+.+++.++++++|.|+++|+||+++|.++. ..+.
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~------- 158 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPH------- 158 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCc-------
Confidence 111 12357899999999999999999999999888999999998763 2222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+.+|+++|+.|++++ |||||+|+||+|+|++....
T Consensus 159 ------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrVn~v~PG~v~T~~~~~~~ 204 (272)
T PRK08159 159 ------------------------------YNVMGVAKAALEASVKYLAVDLGPK----NIRVNAISAGPIKTLAASGIG 204 (272)
T ss_pred ------------------------------chhhhhHHHHHHHHHHHHHHHhccc----CeEEEEeecCCcCCHHHhcCC
Confidence 2689999999999999999999887 99999999999999874211
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|||+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 205 ~~~~~~~~~~~~~p~~r~~~peevA~~~~~L~s~~~~~itG~~i--~vdgG~~~ 256 (272)
T PRK08159 205 DFRYILKWNEYNAPLRRTVTIEEVGDSALYLLSDLSRGVTGEVH--HVDSGYHV 256 (272)
T ss_pred cchHHHHHHHhCCcccccCCHHHHHHHHHHHhCccccCccceEE--EECCCcee
Confidence 1268999999999999999999999999 77888743
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=229.01 Aligned_cols=181 Identities=23% Similarity=0.286 Sum_probs=144.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHH---------------------------Hh--
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVL---------------------------KD-- 233 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l---------------------------~~-- 233 (484)
+++|++|||||++|||+++|++|+++ |++|++.+ |+.++.++...++ .+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLAND-GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999998 88988864 4444333222211 10
Q ss_pred -------c--------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHH
Q psy8786 234 -------R--------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 234 -------~--------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
. + ......+.|+.++++|+.+++.++++++|.|++.|+||++||.++......
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 154 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPD------ 154 (252)
T ss_pred hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCC------
Confidence 0 0 112234779999999999999999999999988899999999987422111
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++++++++.|++++ |||||+|+||+|+|++....
T Consensus 155 ------------------------------~~~Y~~sKaa~~~~~~~la~e~~~~----girvn~v~Pg~v~t~~~~~~~ 200 (252)
T PRK12747 155 ------------------------------FIAYSMTKGAINTMTFTLAKQLGAR----GITVNAILPGFIKTDMNAELL 200 (252)
T ss_pred ------------------------------chhHHHHHHHHHHHHHHHHHHHhHc----CCEEEEEecCCccCchhhhcc
Confidence 2689999999999999999999887 99999999999999985421
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i--~vdgg~ 250 (252)
T PRK12747 201 SDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLI--DVSGGS 250 (252)
T ss_pred cCHHHHHHHHhcCcccCCCCHHHHHHHHHHHcCccccCcCCcEE--EecCCc
Confidence 1158999999999999999999999988 667765
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=230.31 Aligned_cols=184 Identities=18% Similarity=0.229 Sum_probs=152.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
..+++||+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~~l~~k~~lItGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 3 QIQLEGRVAVVTGGSSGIGLATVELLLEA-GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999 899999999987766554443210
Q ss_pred --------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHH
Q psy8786 235 --------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELK 291 (484)
Q Consensus 235 --------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~ 291 (484)
+ ......++|+..+++|+.+++.++++++|.|++ .|+||++||..+.. .+.
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 155 (265)
T PRK07062 82 EARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPH------ 155 (265)
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCC------
Confidence 0 012234689999999999999999999999975 48999999988742 222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|+++|+|+.+++++++.|++++ ||+||+|+||+|+|++....
T Consensus 156 -------------------------------~~~y~asKaal~~~~~~la~e~~~~----gi~v~~i~PG~v~t~~~~~~ 200 (265)
T PRK07062 156 -------------------------------MVATSAARAGLLNLVKSLATELAPK----GVRVNSILLGLVESGQWRRR 200 (265)
T ss_pred -------------------------------chHhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCccccchhhhH
Confidence 1689999999999999999999887 99999999999999974310
Q ss_pred ---------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i--~vdgg~~ 262 (265)
T PRK07062 201 YEARADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFFLASPLSSYTTGSHI--DVSGGFA 262 (265)
T ss_pred HHHhhccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHHHhCchhcccccceE--EEcCceE
Confidence 1258999999999999999999999999 6777764
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-27 Score=228.56 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=151.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|+++||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFARE-GAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999998 899999999987776665554321
Q ss_pred -----------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++++..+++|+.+++.++++++|.|++ .++||++||..+......
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~-------- 152 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFP-------- 152 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCC--------
Confidence 11 11234789999999999999999999999865 479999999876421111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|+|++.+...
T Consensus 153 ---------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~ 201 (254)
T PRK07478 153 ---------------------------GMAAYAASKAGLIGLTQVLAAEYGAQ----GIRVNALLPGGTDTPMGRAMGDT 201 (254)
T ss_pred ---------------------------CcchhHHHHHHHHHHHHHHHHHHhhc----CEEEEEEeeCcccCcccccccCC
Confidence 12789999999999999999999887 999999999999999754321
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~--~~dgg~~ 250 (254)
T PRK07478 202 PEALAFVAGLHALKRMAQPEEIAQAALFLASDAASFVTGTAL--LVDGGVS 250 (254)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCeE--EeCCchh
Confidence 158999999999999999999999998 6677753
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=232.31 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=144.6
Q ss_pred CCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecC---chhHHHHHHHHHhc------------------------
Q psy8786 184 PSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARD---KKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 184 L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~---~~~~~~~~~~l~~~------------------------ 234 (484)
+++|++||||| ++|||+++|++|+++ |++|++++|. .+.+++..+++...
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKRE-GAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHC-CCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 57899999996 689999999999999 8999988653 33333322221100
Q ss_pred ----------CCC-----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 ----------AST-----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 ----------~~~-----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+.. ..+.++|+..+++|+.+++.++++++|+|+++|+||++||.++. ..+.
T Consensus 83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~------- 155 (260)
T PRK06997 83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPN------- 155 (260)
T ss_pred CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCC-------
Confidence 110 12347899999999999999999999999878999999998873 2222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 156 ------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrVn~i~PG~v~T~~~~~~~ 201 (260)
T PRK06997 156 ------------------------------YNTMGLAKASLEASVRYLAVSLGPK----GIRANGISAGPIKTLAASGIK 201 (260)
T ss_pred ------------------------------cchHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCccccchhcccc
Confidence 1689999999999999999999887 99999999999999874311
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.||+++.+++++|+.+ .+||++.
T Consensus 202 ~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i--~vdgg~~ 252 (260)
T PRK06997 202 DFGKILDFVESNAPLRRNVTIEEVGNVAAFLLSDLASGVTGEIT--HVDSGFN 252 (260)
T ss_pred chhhHHHHHHhcCcccccCCHHHHHHHHHHHhCccccCcceeEE--EEcCChh
Confidence 1168999999999999999999999998 6777764
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=231.55 Aligned_cols=181 Identities=17% Similarity=0.140 Sum_probs=144.5
Q ss_pred CCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 184 PSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++||++||||| ++|||+++|++|+++ |++|++++|++. .++..+++...
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~-G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQ-GAELAFTYVVDK-LEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCcHH-HHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence 68999999997 679999999999999 899999877632 22222222110
Q ss_pred -----------CCC-----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHH
Q psy8786 235 -----------AST-----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 235 -----------~~~-----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
+.. ....+.|+..+++|+.+++.+++++.|.|++ +|+||++||.++. ..+.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~----- 156 (261)
T PRK08690 82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPN----- 156 (261)
T ss_pred hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCC-----
Confidence 111 1123678999999999999999999999865 4899999998874 2222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
+..|++||+|+.+|++.++.|++++ |||||+|+||+|+|++...
T Consensus 157 --------------------------------~~~Y~asKaal~~l~~~la~e~~~~----gIrVn~i~PG~v~T~~~~~ 200 (261)
T PRK08690 157 --------------------------------YNVMGMAKASLEAGIRFTAACLGKE----GIRCNGISAGPIKTLAASG 200 (261)
T ss_pred --------------------------------cccchhHHHHHHHHHHHHHHHhhhc----CeEEEEEecCcccchhhhc
Confidence 2789999999999999999999887 9999999999999997532
Q ss_pred C-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 M-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 ~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. +..+|+|+|+.+.||+++.+.+++|+.+ .+||++..
T Consensus 201 ~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~l~s~~~~~~tG~~i--~vdgG~~~ 254 (261)
T PRK08690 201 IADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEIT--YVDGGYSI 254 (261)
T ss_pred CCchHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCcccCCcceeEE--EEcCCccc
Confidence 1 1268999999999999999999999999 77888754
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=228.69 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=150.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAA-GARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999 899999999977655544433210
Q ss_pred -------C-----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhh-cCCEEEEEeCCCcc-ccccchHHHHHHHhhcccc
Q psy8786 235 -------A-----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGH-LSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -------~-----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~-~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~ 300 (484)
+ ......++|+..+++|+.+++.+++++++.|+ ++|+||++||.++. +.+.
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~--------------- 146 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTG--------------- 146 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCC---------------
Confidence 0 01234588999999999999999999999984 56899999998873 2222
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------- 371 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------- 371 (484)
...|++||+|+.++++.++.|++++ ||+||+|+||+++|++....
T Consensus 147 ----------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~~~t~~~~~~~~~~~~~~~ 200 (261)
T PRK08265 147 ----------------------RWLYPASKAAIRQLTRSMAMDLAPD----GIRVNSVSPGWTWSRVMDELSGGDRAKAD 200 (261)
T ss_pred ----------------------CchhHHHHHHHHHHHHHHHHHhccc----CEEEEEEccCCccChhhhhhcccchhHHH
Confidence 1689999999999999999999877 99999999999999974321
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+.||+++.+.+++|+++ .+||++..
T Consensus 201 ~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i--~vdgg~~~ 246 (261)
T PRK08265 201 RVAAPFHLLGRVGDPEEVAQVVAFLCSDAASFVTGADY--AVDGGYSA 246 (261)
T ss_pred HhhcccCCCCCccCHHHHHHHHHHHcCccccCccCcEE--EECCCeec
Confidence 1157899999999999999999999999 78888754
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=232.28 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=148.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc---------hhHHHHHHHHHhc--------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK---------KKGAEAVQVLKDR-------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~---------~~~~~~~~~l~~~-------------------- 234 (484)
++||++|||||++|||+++|++|+++ |++|++++|+. +.+++..+++...
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~-G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 68999999999999999999999999 89999988765 5555554444321
Q ss_pred ------------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCcc-
Q psy8786 235 ------------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGH- 281 (484)
Q Consensus 235 ------------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~- 281 (484)
+ ......++|+..+++|+.|++.++++++|+|++ .|+||++||.++.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 1 112345889999999999999999999999864 2699999998873
Q ss_pred ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q psy8786 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361 (484)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG 361 (484)
+.+. ...|++||+|+++|+++++.|++++ |||||+|+||
T Consensus 163 ~~~~-------------------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrVn~v~Pg 201 (286)
T PRK07791 163 GSVG-------------------------------------QGNYSAAKAGIAALTLVAAAELGRY----GVTVNAIAPA 201 (286)
T ss_pred CCCC-------------------------------------chhhHHHHHHHHHHHHHHHHHHHHh----CeEEEEECCC
Confidence 2222 2789999999999999999999987 9999999999
Q ss_pred cccCCCccCC-------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 362 YVATNMSSFM-------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 362 ~V~T~m~~~~-------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+.|++.... ...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 202 -~~T~~~~~~~~~~~~~~~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i--~vdgG~~~ 259 (286)
T PRK07791 202 -ARTRMTETVFAEMMAKPEEGEFDAMAPENVSPLVVWLGSAESRDVTGKVF--EVEGGKIS 259 (286)
T ss_pred -CCCCcchhhHHHHHhcCcccccCCCCHHHHHHHHHHHhCchhcCCCCcEE--EEcCCceE
Confidence 799875321 1258999999999999999999999999 77888765
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=225.77 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=152.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++|++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~-G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEY-GAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999 899999999987766655544321
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ......++|+..+++|+.+++.+++++.+.+++ .++||++||..+. +.+.
T Consensus 84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 154 (254)
T PRK08085 84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDT--------- 154 (254)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCC---------
Confidence 0 012235789999999999999999999998854 4899999998763 2221
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+++|++.....
T Consensus 155 ----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~pG~~~t~~~~~~~~~ 202 (254)
T PRK08085 155 ----------------------------ITPYAASKGAVKMLTRGMCVELARH----NIQVNGIAPGYFKTEMTKALVED 202 (254)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHHHHHhh----CeEEEEEEeCCCCCcchhhhccC
Confidence 2689999999999999999999887 999999999999999864311
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+++++|+.+ .+||++.
T Consensus 203 ~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~i~G~~i--~~dgg~~ 251 (254)
T PRK08085 203 EAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLL--FVDGGML 251 (254)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEE--EECCCee
Confidence 168999999999999999999999998 6787764
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=229.02 Aligned_cols=182 Identities=20% Similarity=0.239 Sum_probs=148.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+ +++++..+++.+.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~-G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQE-GAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999 8999999998 6555555544321
Q ss_pred ----------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+. .....+.|+..+++|+.+++.++++++|.|++ +|+||++||..+......
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADLY---------- 150 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCCCC----------
Confidence 11 11234789999999999999999999999864 589999999887422111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|++||+|+++|++++++|++++ ||+||+|+||+|+|++....
T Consensus 151 --------------------------~~~Y~asKaal~~l~~~la~e~~~~----gI~v~~v~PG~v~T~~~~~~~~~~~ 200 (272)
T PRK08589 151 --------------------------RSGYNAAKGAVINFTKSIAIEYGRD----GIRANAIAPGTIETPLVDKLTGTSE 200 (272)
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCcccCchhhhhcccch
Confidence 1689999999999999999999887 99999999999999985421
Q ss_pred ------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .++|++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i--~vdgg~~ 253 (272)
T PRK08589 201 DEAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSFITGETI--RIDGGVM 253 (272)
T ss_pred hhHHHHHhhhhhccCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEE--EECCCcc
Confidence 0147999999999999999999999998 5677654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=228.35 Aligned_cols=184 Identities=21% Similarity=0.206 Sum_probs=147.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch--hHHHHHHHHHhc-------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK--KGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~--~~~~~~~~l~~~------------------------- 234 (484)
..|+||++|||||++|||+++|++|+++ |++|++++++.+ ..++..+.++..
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFARE-GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999 899998877532 222222222110
Q ss_pred -------------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -------------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -------------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. ...+.++|+..+++|+.|++.+++++++.|+++++||++||..++.....
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 201 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPT-------- 201 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCCC--------
Confidence 11 11245789999999999999999999999988899999999887432111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.++.++ ||+||+|+||+|+|++....
T Consensus 202 ----------------------------~~~Y~asK~a~~~~~~~la~el~~~----gI~v~~v~PG~i~t~~~~~~~~~ 249 (300)
T PRK06128 202 ----------------------------LLDYASTKAAIVAFTKALAKQVAEK----GIRVNAVAPGPVWTPLQPSGGQP 249 (300)
T ss_pred ----------------------------chhHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEEECcCcCCCcccCCCC
Confidence 2689999999999999999999887 99999999999999985321
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|..++||+++.+.+++|+.+ .++|++.
T Consensus 250 ~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~~G~~~--~v~gg~~ 298 (300)
T PRK06128 250 PEKIPDFGSETPMKRPGQPVEMAPLYVLLASQESSYVTGEVF--GVTGGLL 298 (300)
T ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCccCcEE--eeCCCEe
Confidence 1168999999999999999999999998 6676653
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=225.86 Aligned_cols=186 Identities=20% Similarity=0.231 Sum_probs=150.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~~~-------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+ .+++..+++...
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQA-GADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999998 899999998754 334443333211
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKR 293 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~ 293 (484)
+ ......++++..+++|+.+++.+++++++.|++ .++||++||.++.. .+..
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~------- 155 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGL------- 155 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCC-------
Confidence 0 011234789999999999999999999998864 47999999988742 2211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
+...|++||+|+++++++++.|++++ |||||+|+||+|+|++....
T Consensus 156 ----------------------------~~~~Y~~sKaa~~~l~~~la~e~~~~----gi~v~~v~PG~i~t~~~~~~~~ 203 (254)
T PRK06114 156 ----------------------------LQAHYNASKAGVIHLSKSLAMEWVGR----GIRVNSISPGYTATPMNTRPEM 203 (254)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEeecCccCcccccccc
Confidence 12689999999999999999999887 99999999999999986421
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+++.++||+++.++++||+++ .+||++..
T Consensus 204 ~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~tG~~i--~~dgg~~~ 253 (254)
T PRK06114 204 VHQTKLFEEQTPMQRMAKVDEMVGPAVFLLSDAASFCTGVDL--LVDGGFVC 253 (254)
T ss_pred hHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceE--EECcCEec
Confidence 1268999999999999999999999998 77887743
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=226.57 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=147.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~------------------------- 234 (484)
..+|+||++|||||++|||+++|++|+++ |++|++++| +.+.+++..+++...
T Consensus 3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 3 SNEMKGKTLVISGGTRGIGKAIVYEFAQS-GVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 45689999999999999999999999999 899988865 455444443333210
Q ss_pred ------------CC----------CC----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-cccc
Q psy8786 235 ------------AS----------TV----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQI 285 (484)
Q Consensus 235 ------------~~----------~~----~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~ 285 (484)
.. .. ...++++..+++|+.+++.++++++|.|++ .++||++||..+. ..+.
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 161 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIEN 161 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCCC
Confidence 11 01 123788899999999999999999999865 3799999998763 2222
Q ss_pred chHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
. ..|++||+|+++++++|+.|++++ |||||+|+||+++|
T Consensus 162 ~-------------------------------------~~Y~asK~a~~~~~~~la~el~~~----gi~v~~v~PG~i~T 200 (260)
T PRK08416 162 Y-------------------------------------AGHGTSKAAVETMVKYAATELGEK----NIRVNAVSGGPIDT 200 (260)
T ss_pred c-------------------------------------ccchhhHHHHHHHHHHHHHHhhhh----CeEEEEEeeCcccC
Confidence 1 689999999999999999999887 99999999999999
Q ss_pred CCccCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 366 NMSSFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 366 ~m~~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
++.... ...+|+|+|+.++||+++.+.+++|+.+ .++|+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i--~vdgg~~ 258 (260)
T PRK08416 201 DALKAFTNYEEVKAKTEELSPLNRMGQPEDLAGACLFLCSEKASWLTGQTI--VVDGGTT 258 (260)
T ss_pred hhhhhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhhcccCcEE--EEcCCee
Confidence 985321 1268999999999999999999999998 6677664
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=228.88 Aligned_cols=172 Identities=25% Similarity=0.312 Sum_probs=145.4
Q ss_pred cCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------------
Q psy8786 193 GAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------------ 234 (484)
Q Consensus 193 Gas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------------ 234 (484)
|++ +|||+++|++|+++ |++|++++|+.+++++..+++.+.
T Consensus 1 g~~~s~GiG~aia~~l~~~-Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE-GANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT-TEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred CCCCCCChHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 666 99999999999999 999999999988765555444432
Q ss_pred ----CC----CCc----cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccc
Q psy8786 235 ----AS----TVP----FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ----~~----~~~----~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~ 301 (484)
.. ..+ ..++|+..+++|+.+++.+++++.|.|+++|+||+++|.++. ..+.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~---------------- 143 (241)
T PF13561_consen 80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPG---------------- 143 (241)
T ss_dssp EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTT----------------
T ss_pred cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCcc----------------
Confidence 01 112 348999999999999999999999999999999999998873 3222
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhh-hcCCCCeEEEEEeCCcccCCCccCCC--------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDC-ELGNQDKVINAVHPGYVATNMSSFMG-------- 372 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~~~-------- 372 (484)
...|+++|+|+++|+|++|.||++ + |||||+|+||+|+|++.....
T Consensus 144 ---------------------~~~y~~sKaal~~l~r~lA~el~~~~----gIrVN~V~pG~i~t~~~~~~~~~~~~~~~ 198 (241)
T PF13561_consen 144 ---------------------YSAYSASKAALEGLTRSLAKELAPKK----GIRVNAVSPGPIETPMTERIPGNEEFLEE 198 (241)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHHHGGHG----TEEEEEEEESSBSSHHHHHHHTHHHHHHH
T ss_pred ---------------------chhhHHHHHHHHHHHHHHHHHhcccc----Ceeeeeecccceeccchhccccccchhhh
Confidence 268999999999999999999999 8 999999999999999754321
Q ss_pred ---------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ---------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ---------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|++++||+|+.++++||++| .+|||++
T Consensus 199 ~~~~~pl~r~~~~~evA~~v~fL~s~~a~~itG~~i--~vDGG~s 241 (241)
T PF13561_consen 199 LKKRIPLGRLGTPEEVANAVLFLASDAASYITGQVI--PVDGGFS 241 (241)
T ss_dssp HHHHSTTSSHBEHHHHHHHHHHHHSGGGTTGTSEEE--EESTTGG
T ss_pred hhhhhccCCCcCHHHHHHHHHHHhCccccCccCCeE--EECCCcC
Confidence 178999999999999999999999999 8888873
|
... |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=222.70 Aligned_cols=162 Identities=21% Similarity=0.231 Sum_probs=140.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+.+|++||||||+|||+++|++||++ |++|++++|+++++++..++++..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 47899999999999999999999999 999999999999999998888764
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHHh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~~ 295 (484)
...+.+.++.+.++++|+.+...++++++|.|.+ .|.||||+|.++ .+.+..
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~--------- 153 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYM--------- 153 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcch---------
Confidence 1223345778899999999999999999999965 489999999999 444443
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--C-
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--G- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--~- 372 (484)
+.|++||+++.+|+++|+.|+... ||+|.+|+||+|.|+++... .
T Consensus 154 ----------------------------avY~ATKa~v~~fSeaL~~EL~~~----gV~V~~v~PG~~~T~f~~~~~~~~ 201 (265)
T COG0300 154 ----------------------------AVYSATKAFVLSFSEALREELKGT----GVKVTAVCPGPTRTEFFDAKGSDV 201 (265)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHhcCC----CeEEEEEecCcccccccccccccc
Confidence 899999999999999999999877 99999999999999999511 1
Q ss_pred --------CCCHHhHHHHHHHHH
Q psy8786 373 --------NVNIFDDSSTFNAFE 387 (484)
Q Consensus 373 --------~~~peevA~~~~~L~ 387 (484)
..+|+++|+..+...
T Consensus 202 ~~~~~~~~~~~~~~va~~~~~~l 224 (265)
T COG0300 202 YLLSPGELVLSPEDVAEAALKAL 224 (265)
T ss_pred ccccchhhccCHHHHHHHHHHHH
Confidence 278999999887655
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=228.55 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=147.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc--hhHHHHHHHHHhc-------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK--KKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~--~~~~~~~~~l~~~------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++.+|+. +..++..+.+...
T Consensus 45 ~~~~~k~vlITGas~gIG~aia~~L~~~-G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 45 GRLKDRKALVTGGDSGIGRAAAIAYARE-GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999 89999887653 2333322222110
Q ss_pred -------------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -------------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -------------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++|+.++++|+.|++.+++++.|.|+++++||++||..+......
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~-------- 195 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPH-------- 195 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCCC--------
Confidence 10 12235789999999999999999999999988899999999887422111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
..+|++||+|++++++.++.|++++ |||||+|+||+|+|++....
T Consensus 196 ----------------------------~~~Y~asKaal~~l~~~la~el~~~----gIrvn~i~PG~v~t~~~~~~~~~ 243 (294)
T PRK07985 196 ----------------------------LLDYAATKAAILNYSRGLAKQVAEK----GIRVNIVAPGPIWTALQISGGQT 243 (294)
T ss_pred ----------------------------cchhHHHHHHHHHHHHHHHHHHhHh----CcEEEEEECCcCccccccccCCC
Confidence 1689999999999999999999887 99999999999999974210
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++
T Consensus 244 ~~~~~~~~~~~~~~r~~~pedva~~~~fL~s~~~~~itG~~i--~vdgG~ 291 (294)
T PRK07985 244 QDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVH--GVCGGE 291 (294)
T ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHhhhChhcCCccccEE--eeCCCe
Confidence 1278999999999999999999999998 677765
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=219.63 Aligned_cols=175 Identities=16% Similarity=0.065 Sum_probs=144.7
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh----------------------c------C-C--
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----------------------R------A-S-- 236 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~----------------------~------~-~-- 236 (484)
+++||||++|||+++|++|+++ |++|++++|+.+++++..+++.. . . .
T Consensus 2 ~vlItGas~giG~~ia~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~ 80 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND-GHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS 80 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence 3899999999999999999998 89999999987766544332210 0 1 0
Q ss_pred ---CC----c---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccc
Q psy8786 237 ---TV----P---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 237 ---~~----~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
.. . ..++|++++++|+.+++.++++++|.|+++|+||+++|.+. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~---~~--------------------- 136 (223)
T PRK05884 81 WDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP---PA--------------------- 136 (223)
T ss_pred ccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---CC---------------------
Confidence 00 0 24789999999999999999999999988899999999762 11
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---CCCCHHhHHHHH
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---GNVNIFDDSSTF 383 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---~~~~peevA~~~ 383 (484)
...|++||+|+.+|+++++.|++++ |||||+|+||+++|++.... +..+|+|+++.+
T Consensus 137 ----------------~~~Y~asKaal~~~~~~la~e~~~~----gI~v~~v~PG~v~t~~~~~~~~~p~~~~~~ia~~~ 196 (223)
T PRK05884 137 ----------------GSAEAAIKAALSNWTAGQAAVFGTR----GITINAVACGRSVQPGYDGLSRTPPPVAAEIARLA 196 (223)
T ss_pred ----------------ccccHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCccCchhhhhccCCCCCCHHHHHHHH
Confidence 1689999999999999999999887 99999999999999975432 235899999999
Q ss_pred HHHHhhhccccccccccccccceeec
Q psy8786 384 NAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 384 ~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.||+++.+.+++|+.+ .+||++.+
T Consensus 197 ~~l~s~~~~~v~G~~i--~vdgg~~~ 220 (223)
T PRK05884 197 LFLTTPAARHITGQTL--HVSHGALA 220 (223)
T ss_pred HHHcCchhhccCCcEE--EeCCCeec
Confidence 9999999999999998 67888755
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=224.55 Aligned_cols=188 Identities=18% Similarity=0.172 Sum_probs=152.7
Q ss_pred CCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
+..+++++|+++||||++|||+++|++|+++ |++|++++|+.+..++..+++...
T Consensus 3 ~~~~~~~~k~vlVtGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 3 PNLFSLKGKVAVITGGGGVLGGAMAKELARA-GAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CceeccCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3345789999999999999999999999998 899999999877665554443210
Q ss_pred --------------CC---------------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeC
Q psy8786 235 --------------AS---------------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSS 277 (484)
Q Consensus 235 --------------~~---------------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS 277 (484)
+. .....++++..+++|+.+++.+++++++.|++ .++||++||
T Consensus 82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS 161 (278)
T PRK08277 82 LEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISS 161 (278)
T ss_pred HHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 10 01224789999999999999999999999864 489999999
Q ss_pred CCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEE
Q psy8786 278 SAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 357 (484)
Q Consensus 278 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNa 357 (484)
..+..... +...|++||+|+++++++++.+++++ |||||+
T Consensus 162 ~~~~~~~~------------------------------------~~~~Y~~sK~a~~~l~~~la~e~~~~----girvn~ 201 (278)
T PRK08277 162 MNAFTPLT------------------------------------KVPAYSAAKAAISNFTQWLAVHFAKV----GIRVNA 201 (278)
T ss_pred chhcCCCC------------------------------------CCchhHHHHHHHHHHHHHHHHHhCcc----CeEEEE
Confidence 88742211 12689999999999999999999877 999999
Q ss_pred EeCCcccCCCccCC----------------------CCCCHHhHHHHHHHHHhh-hccccccccccccccceeec
Q psy8786 358 VHPGYVATNMSSFM----------------------GNVNIFDDSSTFNAFERV-ISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 358 V~PG~V~T~m~~~~----------------------~~~~peevA~~~~~L~s~-~a~~itG~~i~~~~~g~~~~ 409 (484)
|+||+|+|++.+.. ...+|+|+|++++||+++ .+.+++|+.+ .+||++..
T Consensus 202 v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i--~vdgG~~~ 274 (278)
T PRK08277 202 IAPGFFLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVL--PVDGGFSA 274 (278)
T ss_pred EEeccCcCcchhhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEE--EECCCeec
Confidence 99999999975321 115899999999999999 8999999999 77888754
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=220.90 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=151.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|+++||||++|||+++|+.|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~~~~k~vlItG~~~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 2 DLHLAGKRVLITGASKGIGAAAAEAFAAE-GCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 35678999999999999999999999998 889999999988776655544321
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+ ......++|+.++++|+.+++.++++++|.|++. ++||+++|..+.....
T Consensus 81 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~------------ 148 (259)
T PRK06125 81 DIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDA------------ 148 (259)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCC------------
Confidence 0 1123458999999999999999999999999753 8999999987732111
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------- 370 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------- 370 (484)
.+..|+++|+|+++++++++.|+.++ |||||+|+||+++|++...
T Consensus 149 ------------------------~~~~y~ask~al~~~~~~la~e~~~~----gi~v~~i~PG~v~t~~~~~~~~~~~~ 200 (259)
T PRK06125 149 ------------------------DYICGSAGNAALMAFTRALGGKSLDD----GVRVVGVNPGPVATDRMLTLLKGRAR 200 (259)
T ss_pred ------------------------CchHhHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecCccccHHHHHHHHhhhh
Confidence 12679999999999999999998877 9999999999999995321
Q ss_pred ------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 ------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
....+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i--~vdgg~~ 254 (259)
T PRK06125 201 AELGDESRWQELLAGLPLGRPATPEEVADLVAFLASPRSGYTSGTVV--TVDGGIS 254 (259)
T ss_pred cccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHHcCchhccccCceE--EecCCee
Confidence 01258999999999999999999999998 6777764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=224.70 Aligned_cols=206 Identities=17% Similarity=0.158 Sum_probs=148.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|++||||| +|||+++|++|+ + |++|++++|+++++++..+++...
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~-G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-A-GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 489999998 699999999996 6 899999999987766655544321
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
.......++++.++++|+.|++.+++++.|.|++++++|+++|.++..........+.. .......
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~---------~~~~~~~ 149 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERA---------LATTPTE 149 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcc---------ccccccc
Confidence 11112346789999999999999999999999888999999998874322100000000 0000000
Q ss_pred cCCCccc--cc-CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---------------
Q psy8786 310 KEHPRAH--VA-KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------------- 371 (484)
Q Consensus 310 ~~~~~~~--~~-~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------------- 371 (484)
+...... .. ...+...|++||+|+++++++++.|++++ |||||+|+||+|+|++....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~----gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 225 (275)
T PRK06940 150 ELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGER----GARINSISPGIISTPLAQDELNGPRGDGYRNMFAK 225 (275)
T ss_pred cccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccC----CeEEEEeccCcCcCccchhhhcCCchHHHHHHhhh
Confidence 0000000 00 00013689999999999999999999876 99999999999999985321
Q ss_pred ----CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+++++|+.+ .+||++..
T Consensus 226 ~p~~r~~~peeia~~~~fL~s~~~~~itG~~i--~vdgg~~~ 265 (275)
T PRK06940 226 SPAGRPGTPDEIAALAEFLMGPRGSFITGSDF--LVDGGATA 265 (275)
T ss_pred CCcccCCCHHHHHHHHHHHcCcccCcccCceE--EEcCCeEE
Confidence 1268999999999999999999999998 77888753
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=221.31 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=148.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+ ++.++..+.+...
T Consensus 10 ~~~l~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 10 FFSLDGKVAIVTGGNTGLGQGYAVALAKA-GADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred cccCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 8999999987 3333333322210
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ......++++..+++|+.+++.+++++++.|++ .++||++||..+......
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 159 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKF-------- 159 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCC--------
Confidence 1 012235789999999999999999999999865 379999999877422111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|++++++++++|++++ ||+||+|+||+|+|++....
T Consensus 160 ----------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~i~PG~v~t~~~~~~~~~ 207 (258)
T PRK06935 160 ----------------------------VPAYTASKHGVAGLTKAFANELAAY----NIQVNAIAPGYIKTANTAPIRAD 207 (258)
T ss_pred ----------------------------chhhHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEeccccccchhhcccC
Confidence 2689999999999999999999887 99999999999999975321
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.||+++.+++++|+++ .++|++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i--~~dgg~~ 256 (258)
T PRK06935 208 KNRNDEILKRIPAGRWGEPDDLMGAAVFLASRASDYVNGHIL--AVDGGWL 256 (258)
T ss_pred hHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEE--EECCCee
Confidence 1268999999999999999999999998 6777754
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=229.39 Aligned_cols=181 Identities=19% Similarity=0.190 Sum_probs=140.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc----------hhHHHHHHHHHhc----------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK----------KKGAEAVQVLKDR---------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~----------~~~~~~~~~l~~~---------------- 234 (484)
..+|+||+++||||++|||+++|++|+++ |++|++++|+. +++++..+++...
T Consensus 3 ~~~l~~k~~lITGgs~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 3 MKPLRGKVALVAGATRGAGRGIAVELGAA-GATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQ 81 (305)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 35689999999999999999999999998 89999999973 3334433333211
Q ss_pred --------------------CC-C--------C----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCC
Q psy8786 235 --------------------AS-T--------V----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSA 279 (484)
Q Consensus 235 --------------------~~-~--------~----~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~a 279 (484)
.. . . ...++|+..+++|+.+++.++++++|.|++ +|+||+++|..
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~ 161 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT 161 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence 11 1 1 123678899999999999999999999964 48999999976
Q ss_pred ccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEe
Q psy8786 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH 359 (484)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~ 359 (484)
+....... . ....|++||+|+.+|+++|+.|++++ |||||+|+
T Consensus 162 ~~~~~~~~-------------------------------~--~~~~Y~asKaal~~lt~~La~el~~~----gIrVn~v~ 204 (305)
T PRK08303 162 AEYNATHY-------------------------------R--LSVFYDLAKTSVNRLAFSLAHELAPH----GATAVALT 204 (305)
T ss_pred ccccCcCC-------------------------------C--CcchhHHHHHHHHHHHHHHHHHhhhc----CcEEEEec
Confidence 52111000 0 12679999999999999999999887 99999999
Q ss_pred CCcccCCCccC---------------CC----CCCHHhHHHHHHHHHhhhc-cccccccc
Q psy8786 360 PGYVATNMSSF---------------MG----NVNIFDDSSTFNAFERVIS-HFLIGQQI 399 (484)
Q Consensus 360 PG~V~T~m~~~---------------~~----~~~peevA~~~~~L~s~~a-~~itG~~i 399 (484)
||+|+|+|... .+ ..+|+|+|+.+.||+++.. .+++|+.+
T Consensus 205 PG~v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~~~~~itG~~l 264 (305)
T PRK08303 205 PGWLRSEMMLDAFGVTEENWRDALAKEPHFAISETPRYVGRAVAALAADPDVARWNGQSL 264 (305)
T ss_pred CCccccHHHHHhhccCccchhhhhccccccccCCCHHHHHHHHHHHHcCcchhhcCCcEE
Confidence 99999997421 01 1479999999999999874 69999987
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=218.28 Aligned_cols=182 Identities=21% Similarity=0.261 Sum_probs=150.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|+++||||++|||++++++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQ-GAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999 899999999877666555544221
Q ss_pred ----------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ----------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ----------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
.. .....++++..+++|+.+++.+++++++++++ .++|+++||..+. +.+.
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 154 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDF-------- 154 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCC--------
Confidence 11 12234788999999999999999999999865 3899999998763 2221
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||++++++++++++|+.++ ||+||+|+||+|+|++....
T Consensus 155 -----------------------------~~~Y~~sK~al~~~~~~l~~e~~~~----gi~v~~i~PG~v~t~~~~~~~~ 201 (252)
T PRK07035 155 -----------------------------QGIYSITKAAVISMTKAFAKECAPF----GIRVNALLPGLTDTKFASALFK 201 (252)
T ss_pred -----------------------------CcchHHHHHHHHHHHHHHHHHHhhc----CEEEEEEeeccccCcccccccC
Confidence 2789999999999999999999887 99999999999999985432
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .+||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~dgg~ 250 (252)
T PRK07035 202 NDAILKQALAHIPLRRHAEPSEMAGAVLYLASDASSYTTGECL--NVDGGY 250 (252)
T ss_pred CHHHHHHHHccCCCCCcCCHHHHHHHHHHHhCccccCccCCEE--EeCCCc
Confidence 1268999999999999999999999998 567665
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=219.80 Aligned_cols=185 Identities=19% Similarity=0.177 Sum_probs=146.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-------------------------HHHHHHHHHhc-
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-------------------------GAEAVQVLKDR- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-------------------------~~~~~~~l~~~- 234 (484)
.++++||+++||||++|||+++|++|+++ |++|++++++... .+++.+++.+.
T Consensus 5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 5 AFSLEGKVAVVTGCDTGLGQGMALGLAEA-GCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999 8999887765321 11111111111
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++|++++++|+.+++.+++++.+.|++ +|+||++||..+......
T Consensus 84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 154 (253)
T PRK08993 84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIR--------- 154 (253)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCC---------
Confidence 1 112235789999999999999999999998854 379999999877432211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++++++++.|+.++ ||+||+|+||+++|++....
T Consensus 155 ---------------------------~~~Y~~sKaa~~~~~~~la~e~~~~----gi~v~~v~pG~v~T~~~~~~~~~~ 203 (253)
T PRK08993 155 ---------------------------VPSYTASKSGVMGVTRLMANEWAKH----NINVNAIAPGYMATNNTQQLRADE 203 (253)
T ss_pred ---------------------------CcchHHHHHHHHHHHHHHHHHhhhh----CeEEEEEeeCcccCcchhhhccch
Confidence 1689999999999999999999887 99999999999999985422
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .+||++.
T Consensus 204 ~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~G~~~--~~dgg~~ 251 (253)
T PRK08993 204 QRSAEILDRIPAGRWGLPSDLMGPVVFLASSASDYINGYTI--AVDGGWL 251 (253)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEE--EECCCEe
Confidence 1258999999999999999999999998 6677763
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=211.39 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=154.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
..+|.|+++++||+..|||+++++.|++. |++|+.+.|+++.+...+++....
T Consensus 2 ~t~laG~~vlvTgagaGIG~~~v~~La~a-GA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidg 80 (245)
T KOG1207|consen 2 KTSLAGVIVLVTGAGAGIGKEIVLSLAKA-GAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDG 80 (245)
T ss_pred cccccceEEEeecccccccHHHHHHHHhc-CCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhh
Confidence 35689999999999999999999999999 999999999999988877664431
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhh---cCCEEEEEeCCCc-cccccchHHHHHHHhhccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLR---RHARVVNLSSSAG-HLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~---~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~ 299 (484)
...+.+.+.++..|++|+.+++.++|.+...+- ..|.|||+||.+. +.....
T Consensus 81 LVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nH------------- 147 (245)
T KOG1207|consen 81 LVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNH------------- 147 (245)
T ss_pred hhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCc-------------
Confidence 222334578999999999999999998655442 2378999999988 433332
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN------ 373 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~------ 373 (484)
..|+++|+|+.++||+||.|++++ +||||+|.|-.|.|+|.++...
T Consensus 148 ------------------------tvYcatKaALDmlTk~lAlELGp~----kIRVNsVNPTVVmT~MG~dnWSDP~K~k 199 (245)
T KOG1207|consen 148 ------------------------TVYCATKAALDMLTKCLALELGPQ----KIRVNSVNPTVVMTDMGRDNWSDPDKKK 199 (245)
T ss_pred ------------------------eEEeecHHHHHHHHHHHHHhhCcc----eeEeeccCCeEEEecccccccCCchhcc
Confidence 789999999999999999999887 8999999999999999875432
Q ss_pred -----------CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 374 -----------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 374 -----------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+.++++||.|+.+++.+|..+ .++|+|.
T Consensus 200 ~mL~riPl~rFaEV~eVVnA~lfLLSd~ssmttGstl--pveGGfs 243 (245)
T KOG1207|consen 200 KMLDRIPLKRFAEVDEVVNAVLFLLSDNSSMTTGSTL--PVEGGFS 243 (245)
T ss_pred chhhhCchhhhhHHHHHHhhheeeeecCcCcccCcee--eecCCcc
Confidence 67889999999999999999999999 6777764
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=217.72 Aligned_cols=184 Identities=22% Similarity=0.224 Sum_probs=150.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|+++||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 2 ~~~l~~k~ilItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 2 SMTFSGKVALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CcCCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999998 899999999977665544433210
Q ss_pred ------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 ------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 ------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ ......++++.++++|+.+++.++++++|.+.+ .++||++||..+......
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------- 153 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPK------- 153 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCC-------
Confidence 1 012234789999999999999999999998854 479999999877432211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
...|++||+|+++++++++.++.++ ||+||+|+||+|+|++.....
T Consensus 154 -----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~----~i~v~~i~PG~v~t~~~~~~~~ 200 (253)
T PRK06172 154 -----------------------------MSIYAASKHAVIGLTKSAAIEYAKK----GIRVNAVCPAVIDTDMFRRAYE 200 (253)
T ss_pred -----------------------------CchhHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeCCccChhhhhhcc
Confidence 2789999999999999999999876 999999999999999865431
Q ss_pred -----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+++.++||+++.+.+++|+.+ .+||++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i--~~dgg~ 250 (253)
T PRK06172 201 ADPRKAEFAAAMHPVGRIGKVEEVASAVLYLCSDGASFTTGHAL--MVDGGA 250 (253)
T ss_pred cChHHHHHHhccCCCCCccCHHHHHHHHHHHhCccccCcCCcEE--EECCCc
Confidence 158999999999999999999999998 677765
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-25 Score=213.51 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=145.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHH-------------------hc--------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLK-------------------DR-------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~-------------------~~-------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|+++++ +.+..++..+++. ..
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTD-GANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 367899999999999999999999998 889888765 4444333222211 00
Q ss_pred --C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccc
Q psy8786 235 --A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 --~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
+ ......++++..+++|+.+++.+++++.+.|++.++||+++|..+...+..
T Consensus 82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------------- 141 (237)
T PRK12742 82 NAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMPVA-------------------- 141 (237)
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCCCC--------------------
Confidence 0 012234789999999999999999999999987899999999876211111
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------C
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------------G 372 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------------~ 372 (484)
+...|+++|++++++++.++.++++. ||+||+|+||+++|++.... .
T Consensus 142 ---------------~~~~Y~~sKaa~~~~~~~la~~~~~~----gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~ 202 (237)
T PRK12742 142 ---------------GMAAYAASKSALQGMARGLARDFGPR----GITINVVQPGPIDTDANPANGPMKDMMHSFMAIKR 202 (237)
T ss_pred ---------------CCcchHHhHHHHHHHHHHHHHHHhhh----CeEEEEEecCcccCCccccccHHHHHHHhcCCCCC
Confidence 12789999999999999999999877 99999999999999985432 1
Q ss_pred CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+++.+.||+++.+.+++|+.+ .+||++
T Consensus 203 ~~~p~~~a~~~~~l~s~~~~~~~G~~~--~~dgg~ 235 (237)
T PRK12742 203 HGRPEEVAGMVAWLAGPEASFVTGAMH--TIDGAF 235 (237)
T ss_pred CCCHHHHHHHHHHHcCcccCcccCCEE--EeCCCc
Confidence 268999999999999999999999998 677775
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=220.90 Aligned_cols=183 Identities=19% Similarity=0.143 Sum_probs=145.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAE-GARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999999 899999999877665544332110
Q ss_pred -------CC---C----CccHH----HHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -------AS---T----VPFAI----QAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -------~~---~----~~~~~----~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. . ....+ .|+.++++|+.+++.++++++|.|++ +|+||+++|.++......
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------- 152 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGG--------- 152 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCC---------
Confidence 10 0 11122 38889999999999999999999864 589999999887422111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++|++++++|+++ +||||+|+||+|+|+|....
T Consensus 153 ---------------------------~~~Y~~sK~a~~~~~~~la~el~~-----~Irvn~i~PG~i~t~~~~~~~~~~ 200 (263)
T PRK06200 153 ---------------------------GPLYTASKHAVVGLVRQLAYELAP-----KIRVNGVAPGGTVTDLRGPASLGQ 200 (263)
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHHhc-----CcEEEEEeCCccccCCcCccccCC
Confidence 268999999999999999999865 49999999999999975310
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhh-ccccccccccccccceeec
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+.||+++. +.+++|+.+ .+||++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i--~vdgG~~~ 259 (263)
T PRK06200 201 GETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVLLASRRNSRALTGVVI--NADGGLGI 259 (263)
T ss_pred CCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhheecccccCcccceEE--EEcCceee
Confidence 1168999999999999998 999999999 67887643
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=216.48 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=144.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------------
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------------- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------------- 234 (484)
++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKK-GARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5999999999999999999999 899999999987766655554321
Q ss_pred ----CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhh-c--CCEEEEEeCCCccc-cccchHHHHHHHhhcc
Q psy8786 235 ----AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLR-R--HARVVNLSSSAGHL-SQITNLELKKRLRQLR 298 (484)
Q Consensus 235 ----~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~-~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~ 298 (484)
+. .....++|...+.+|+.+++.+++.+++.|. + .|+||++||.++.. .+.
T Consensus 81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~------------- 147 (259)
T PRK08340 81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPP------------- 147 (259)
T ss_pred EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCC-------------
Confidence 10 1123467888899999999999999999874 2 48999999988742 222
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-------- 370 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-------- 370 (484)
...|++||+|+.+++|+++.+++++ ||+||+|+||+++|++.+.
T Consensus 148 ------------------------~~~y~~sKaa~~~~~~~la~e~~~~----gI~v~~v~pG~v~t~~~~~~~~~~~~~ 199 (259)
T PRK08340 148 ------------------------LVLADVTRAGLVQLAKGVSRTYGGK----GIRAYTVLLGSFDTPGARENLARIAEE 199 (259)
T ss_pred ------------------------chHHHHHHHHHHHHHHHHHHHhCCC----CEEEEEeccCcccCccHHHHHHhhhhc
Confidence 2689999999999999999999877 9999999999999997521
Q ss_pred -------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 -------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 -------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.+..+|+|+|+.+.||+++.+++++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL~s~~~~~itG~~i--~vdgg~~ 254 (259)
T PRK08340 200 RGVSFEETWEREVLERTPLKRTGRWEELGSLIAFLLSENAEYMLGSTI--VFDGAMT 254 (259)
T ss_pred cCCchHHHHHHHHhccCCccCCCCHHHHHHHHHHHcCcccccccCceE--eecCCcC
Confidence 01268999999999999999999999998 7777763
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=215.91 Aligned_cols=186 Identities=22% Similarity=0.266 Sum_probs=145.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HH---------------------HHHHHHHhc----
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GA---------------------EAVQVLKDR---- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~---------------------~~~~~l~~~---- 234 (484)
.++++||+++||||++|||+++|++|+++ |++|++++++.+. .+ ++.+++.+.
T Consensus 2 ~~~l~~k~~lItGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06463 2 SMRFKGKVALITGGTRGIGRAIAEAFLRE-GAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRV 80 (255)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999 8898887654322 11 122222111
Q ss_pred -------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
+. .....++++..+++|+.+++.++++++|.|++ .++||++||..+...+..
T Consensus 81 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~------------- 147 (255)
T PRK06463 81 DVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAE------------- 147 (255)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCC-------------
Confidence 11 12245789999999999999999999999863 489999999877422111
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 148 ----------------------~~~~Y~asKaa~~~~~~~la~e~~~~----~i~v~~i~Pg~v~t~~~~~~~~~~~~~~ 201 (255)
T PRK06463 148 ----------------------GTTFYAITKAGIIILTRRLAFELGKY----GIRVNAVAPGWVETDMTLSGKSQEEAEK 201 (255)
T ss_pred ----------------------CccHhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCCCCCchhhcccCccchHH
Confidence 12679999999999999999999887 99999999999999985321
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~--~~dgg~~ 248 (255)
T PRK06463 202 LRELFRNKTVLKTTGKPEDIANIVLFLASDDARYITGQVI--VADGGRI 248 (255)
T ss_pred HHHHHHhCCCcCCCcCHHHHHHHHHHHcChhhcCCCCCEE--EECCCee
Confidence 1158999999999999999999999998 6676653
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=239.98 Aligned_cols=182 Identities=20% Similarity=0.252 Sum_probs=152.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
...||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAA-GDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 358899999999999999999999999 899999999887766655443211
Q ss_pred -------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccc
Q psy8786 235 -------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~ 299 (484)
+. ...+.++|+.++++|+.|+++++++++|.|+++|+||++||.++.. .+.
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------- 410 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPP-------------- 410 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCC--------------
Confidence 11 1123478999999999999999999999997779999999998842 222
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 411 -----------------------~~~Y~asKaal~~l~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~~~~~~~~ 463 (520)
T PRK06484 411 -----------------------RNAYCASKAAVTMLSRSLACEWAPA----GIRVNTVAPGYIETPAVLALKASGRADF 463 (520)
T ss_pred -----------------------CchhHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEeCCccCchhhhhccccHHHH
Confidence 2789999999999999999999887 99999999999999975421
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 464 ~~~~~~~~~~~~~~~~dia~~~~~l~s~~~~~~~G~~i--~vdgg~~ 508 (520)
T PRK06484 464 DSIRRRIPLGRLGDPEEVAEAIAFLASPAASYVNGATL--TVDGGWT 508 (520)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEE--EECCCcc
Confidence 1158999999999999999999999998 6777764
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=216.16 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=146.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----------------hHHHHHHHHHhc------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----------------KGAEAVQVLKDR------------ 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----------------~~~~~~~~l~~~------------ 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+++ ..+++++++.+.
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag 81 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEE-GSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAG 81 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 578999999999999999999999998 899999888643 223334443322
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
.......++|+..+++|+.|++.++++++|+|++ .++||++||.++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------- 139 (258)
T PRK06398 82 IESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTR---------------------- 139 (258)
T ss_pred CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCC----------------------
Confidence 1112345889999999999999999999999954 48999999987742211
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------------
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------------- 371 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------------- 371 (484)
+...|++||+|+++++++++.|+++ +|+||+|+||+|+|++....
T Consensus 140 --------------~~~~Y~~sKaal~~~~~~la~e~~~-----~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T PRK06398 140 --------------NAAAYVTSKHAVLGLTRSIAVDYAP-----TIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKI 200 (258)
T ss_pred --------------CCchhhhhHHHHHHHHHHHHHHhCC-----CCEEEEEecCCccchHHhhhhhccccCChhhhHHHH
Confidence 1278999999999999999999863 49999999999999975321
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 201 ~~~~~~~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i--~~dgg~~~ 246 (258)
T PRK06398 201 REWGEMHPMKRVGKPEEVAYVVAFLASDLASFITGECV--TVDGGLRA 246 (258)
T ss_pred HhhhhcCCcCCCcCHHHHHHHHHHHcCcccCCCCCcEE--EECCcccc
Confidence 0158999999999999999999999998 67887643
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=219.96 Aligned_cols=183 Identities=16% Similarity=0.111 Sum_probs=143.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc----
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR---- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~---- 234 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.+.+++..+... +.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAE-GARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999 8999999998765544332211 00
Q ss_pred -------CCC---Cc----c----HHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -------AST---VP----F----AIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -------~~~---~~----~----~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+.. .+ . .++|+..+++|+.+++.++++++|.|++ +|+||+++|..+......
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------- 151 (262)
T TIGR03325 81 DCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGG--------- 151 (262)
T ss_pred CEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCC---------
Confidence 100 01 1 1468899999999999999999999854 588999999877321111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++|++.++.|+++ +||||+|+||+|+|+|....
T Consensus 152 ---------------------------~~~Y~~sKaa~~~l~~~la~e~~~-----~irvn~i~PG~i~t~~~~~~~~~~ 199 (262)
T TIGR03325 152 ---------------------------GPLYTAAKHAVVGLVKELAFELAP-----YVRVNGVAPGGMSSDLRGPKSLGM 199 (262)
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHhhcc-----CeEEEEEecCCCcCCCcccccccc
Confidence 268999999999999999999864 39999999999999975310
Q ss_pred ---------------------CCCCHHhHHHHHHHHHhhh-ccccccccccccccceeec
Q psy8786 372 ---------------------GNVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ---------------------~~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~ 409 (484)
+..+|+|+|+.++||+++. +.+++|+++ .+||++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i--~vdgg~~~ 257 (262)
T TIGR03325 200 ADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVL--NYDGGMGV 257 (262)
T ss_pred ccccccccchhhhhhhcCCCCCCCChHHhhhheeeeecCCCcccccceEE--EecCCeee
Confidence 1168999999999999974 679999999 67887754
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=213.70 Aligned_cols=184 Identities=21% Similarity=0.252 Sum_probs=150.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++.+|++++.++..+.++..
T Consensus 6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 6 FDLTGRRALVTGSSQGIGYALAEGLAQA-GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred cCCCCCEEEEECCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 3688999999999999999999999998 899999999987666555444320
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++.++++|+.+++.+++++.+.|++ .++||++||..+.....
T Consensus 85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~---------- 154 (255)
T PRK07523 85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARP---------- 154 (255)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCC----------
Confidence 0 011234788999999999999999999999865 48999999987632111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
+...|+++|+++++++++++.+++++ ||+||+|+||+++|++.....
T Consensus 155 --------------------------~~~~y~~sK~a~~~~~~~~a~e~~~~----gi~v~~i~pg~~~t~~~~~~~~~~ 204 (255)
T PRK07523 155 --------------------------GIAPYTATKGAVGNLTKGMATDWAKH----GLQCNAIAPGYFDTPLNAALVADP 204 (255)
T ss_pred --------------------------CCccHHHHHHHHHHHHHHHHHHhhHh----CeEEEEEEECcccCchhhhhccCH
Confidence 12789999999999999999999887 999999999999999854221
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+.+++|+.+ .++|+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i--~~~gg~~ 252 (255)
T PRK07523 205 EFSAWLEKRTPAGRWGKVEELVGACVFLASDASSFVNGHVL--YVDGGIT 252 (255)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEE--EECCCee
Confidence 157999999999999999999999988 6677653
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=211.64 Aligned_cols=186 Identities=19% Similarity=0.233 Sum_probs=147.9
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh------------------HHHHHHHHHhc-------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK------------------GAEAVQVLKDR------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~------------------~~~~~~~l~~~------- 234 (484)
+..+++||++|||||++|||+++|++|+++ |++|++++|+.+. .++..+++.+.
T Consensus 3 ~~~~~~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 81 (260)
T PRK06523 3 FFLELAGKRALVTGGTKGIGAATVARLLEA-GARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDIL 81 (260)
T ss_pred cCcCCCCCEEEEECCCCchhHHHHHHHHHC-CCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 456789999999999999999999999998 8999999986431 12222233221
Q ss_pred ----CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcccc-ccchHHHHHHHhhccc
Q psy8786 235 ----AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLS-QITNLELKKRLRQLRE 299 (484)
Q Consensus 235 ----~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~-~~~~~~~~~~~~~~~~ 299 (484)
+. .....++++..+++|+.+++.+++++++.|++. ++||++||..+... +..
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~------------- 148 (260)
T PRK06523 82 VHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPES------------- 148 (260)
T ss_pred EECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCC-------------
Confidence 10 113457899999999999999999999999653 79999999877422 111
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--------- 370 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--------- 370 (484)
...|++||+++++++++++.+++++ ||+||+|+||+|+|++...
T Consensus 149 -----------------------~~~Y~~sK~a~~~l~~~~a~~~~~~----gi~v~~i~Pg~v~t~~~~~~~~~~~~~~ 201 (260)
T PRK06523 149 -----------------------TTAYAAAKAALSTYSKSLSKEVAPK----GVRVNTVSPGWIETEAAVALAERLAEAA 201 (260)
T ss_pred -----------------------cchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEecCcccCccHHHHHHHHHhhc
Confidence 2789999999999999999999887 9999999999999997421
Q ss_pred -----------------C---CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 -----------------M---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 -----------------~---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+|+|+|+.+.||+++.+++++|+.+ .+||++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~--~vdgg~~ 257 (260)
T PRK06523 202 GTDYEGAKQIIMDSLGGIPLGRPAEPEEVAELIAFLASDRAASITGTEY--VIDGGTV 257 (260)
T ss_pred CCCHHHHHHHHHHHhccCccCCCCCHHHHHHHHHHHhCcccccccCceE--EecCCcc
Confidence 0 1258999999999999999999999988 6777653
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=216.28 Aligned_cols=183 Identities=20% Similarity=0.175 Sum_probs=147.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------------------------c-
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------------------------R- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------------------------~- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+..++..+++.. .
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKH-GAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999998 89999999986655444333311 0
Q ss_pred ----------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ----------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ----------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+. ...+.++++.++++|+.|++.+++++.+.|.+ .|+||+++|.++. +.+..
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~------- 165 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGP------- 165 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCC-------
Confidence 11 11234789999999999999999999998854 4899999998873 32221
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--- 370 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--- 370 (484)
..|++||+|++++++.++.|++++ ||+||+|+||++.|++...
T Consensus 166 ------------------------------~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~i~pg~v~t~~~~~~~~ 211 (280)
T PLN02253 166 ------------------------------HAYTGSKHAVLGLTRSVAAELGKH----GIRVNCVSPYAVPTALALAHLP 211 (280)
T ss_pred ------------------------------cccHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCcccccccccccc
Confidence 689999999999999999999887 9999999999999986321
Q ss_pred -----------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 -----------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 -----------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
....+|+|+|+.+.||+++.+.+++|+.+ .++|++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i--~vdgG~~ 270 (280)
T PLN02253 212 EDERTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFLASDEARYISGLNL--MIDGGFT 270 (280)
T ss_pred cccchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhhcCcccccccCcEE--EECCchh
Confidence 01157999999999999999999999988 6677764
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=210.90 Aligned_cols=183 Identities=21% Similarity=0.243 Sum_probs=144.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHH------------------------HHHhc---
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQ------------------------VLKDR--- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~------------------------~l~~~--- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+.. +..+..+ ++.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEA-GADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999 899999998752 1111111 11100
Q ss_pred --------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 --------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+. .....++++..+++|+.+++.+++++++.|.+ .++||++||..+......
T Consensus 81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----------- 149 (248)
T TIGR01832 81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIR----------- 149 (248)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCC-----------
Confidence 00 11234788999999999999999999998854 379999999876422111
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|++++++++++++.++ ||+||+|+||+|+|++.+..
T Consensus 150 -------------------------~~~Y~~sKaa~~~~~~~la~e~~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~ 200 (248)
T TIGR01832 150 -------------------------VPSYTASKHGVAGLTKLLANEWAAK----GINVNAIAPGYMATNNTQALRADEDR 200 (248)
T ss_pred -------------------------CchhHHHHHHHHHHHHHHHHHhCcc----CcEEEEEEECcCcCcchhccccChHH
Confidence 1689999999999999999999877 99999999999999985421
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+++.||+++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i--~~dgg~~ 246 (248)
T TIGR01832 201 NAAILERIPAGRWGTPDDIGGPAVFLASSASDYVNGYTL--AVDGGWL 246 (248)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCcEE--EeCCCEe
Confidence 1267999999999999999999999998 6777763
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=212.57 Aligned_cols=179 Identities=19% Similarity=0.212 Sum_probs=145.1
Q ss_pred CCCCEEEEEcCCc-hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----c-----------------------
Q psy8786 184 PSERVAVVTGANK-GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----R----------------------- 234 (484)
Q Consensus 184 L~gKvaLITGass-GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----~----------------------- 234 (484)
+++|+++||||++ |||+++|+.|+++ |++|++++|+.++.++..++++. .
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEE-GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999984 9999999999999 89999999988766655444322 0
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ ......++|+..+++|+.+++.++++++|.|++ .++||+++|..+......
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~------- 166 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHG------- 166 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCC-------
Confidence 0 011234789999999999999999999998864 479999999876322111
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+|+++++++++.|++++ |||||+|+||+++|++....
T Consensus 167 -----------------------------~~~Y~~sKaal~~~~~~la~e~~~~----gI~v~~i~Pg~~~t~~~~~~~~ 213 (262)
T PRK07831 167 -----------------------------QAHYAAAKAGVMALTRCSALEAAEY----GVRINAVAPSIAMHPFLAKVTS 213 (262)
T ss_pred -----------------------------CcchHHHHHHHHHHHHHHHHHhCcc----CeEEEEEeeCCccCcccccccC
Confidence 2689999999999999999999887 99999999999999986432
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccc
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPA 405 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g 405 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+++
T Consensus 214 ~~~~~~~~~~~~~~r~~~p~~va~~~~~l~s~~~~~itG~~i--~v~~ 259 (262)
T PRK07831 214 AELLDELAAREAFGRAAEPWEVANVIAFLASDYSSYLTGEVV--SVSS 259 (262)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCceE--EeCC
Confidence 1258999999999999999999999988 4444
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=210.32 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=148.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|+++||||++|||+++|++|+++ |++|++++|+.+..++..+++...
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~-G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999877665544433210
Q ss_pred -----------CC-----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 -----------AS-----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------~~-----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
.. .....++++..+++|+.+++.+++++.+.|++ .++||++||..+.....
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 154 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI----------- 154 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCC-----------
Confidence 10 12234788999999999999999999999864 37999999988732211
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
+...|++||+|+++++++++.++... |||||+|+||+++|++....
T Consensus 155 -------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~----~i~v~~v~pg~~~t~~~~~~~~~~~ 205 (255)
T PRK06113 155 -------------------------NMTSYASSKAAASHLVRNMAFDLGEK----NIRVNGIAPGAILTDALKSVITPEI 205 (255)
T ss_pred -------------------------CcchhHHHHHHHHHHHHHHHHHhhhh----CeEEEEEecccccccccccccCHHH
Confidence 12689999999999999999999877 99999999999999975532
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+++.+.||+++.+.+++|+.+ .++|+.
T Consensus 206 ~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i--~~~gg~ 250 (255)
T PRK06113 206 EQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQIL--TVSGGG 250 (255)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEE--EECCCc
Confidence 1158999999999999999999999998 566654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=212.82 Aligned_cols=183 Identities=20% Similarity=0.206 Sum_probs=146.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~~~-------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+ ..++..+.+...
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~-G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKE-GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999 899999988753 222222222110
Q ss_pred ------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.+++.+++++.+.|+++++||++||.+++.....
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~--------- 191 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNET--------- 191 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCC---------
Confidence 1 011234788999999999999999999999987899999999887432111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++++++++.++.++ ||+||+|+||+|+|++....
T Consensus 192 ---------------------------~~~Y~~sK~a~~~l~~~la~~~~~~----gIrv~~i~pG~v~T~~~~~~~~~~ 240 (290)
T PRK06701 192 ---------------------------LIDYSATKGAIHAFTRSLAQSLVQK----GIRVNAVAPGPIWTPLIPSDFDEE 240 (290)
T ss_pred ---------------------------cchhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCCCCCcccccccCHH
Confidence 1679999999999999999999877 99999999999999975421
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~dva~~~~~ll~~~~~~~~G~~i--~idgg~ 286 (290)
T PRK06701 241 KVSQFGSNTPMQRPGQPEELAPAYVFLASPDSSYITGQML--HVNGGV 286 (290)
T ss_pred HHHHHHhcCCcCCCcCHHHHHHHHHHHcCcccCCccCcEE--EeCCCc
Confidence 1267999999999999999999999988 555543
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-25 Score=216.59 Aligned_cols=145 Identities=21% Similarity=0.276 Sum_probs=122.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++.||+|+|||||+|||+++|++|+++ |++++++.|..+++++..+++++.
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~-G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~ 86 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKR-GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI 86 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhC-CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999 999999999888888776666543
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
.......++....|++|++|+..++++++|+|++. |+||++||++|+ ..|..
T Consensus 87 ~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~------ 160 (282)
T KOG1205|consen 87 RHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR------ 160 (282)
T ss_pred HhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc------
Confidence 01112336777899999999999999999999764 999999999994 44432
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCC--eEEEEEeCCcccCCCcc
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQD--KVINAVHPGYVATNMSS 369 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~g--IrVNaV~PG~V~T~m~~ 369 (484)
..|++||+|+.+|+.+|+.|+... + |++ +|+||+|+|++..
T Consensus 161 -------------------------------~~Y~ASK~Al~~f~etLR~El~~~----~~~i~i-~V~PG~V~Te~~~ 203 (282)
T KOG1205|consen 161 -------------------------------SIYSASKHALEGFFETLRQELIPL----GTIIII-LVSPGPIETEFTG 203 (282)
T ss_pred -------------------------------cccchHHHHHHHHHHHHHHHhhcc----CceEEE-EEecCceeecccc
Confidence 689999999999999999999886 5 666 9999999999754
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=210.27 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=146.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~~~------------------------- 234 (484)
..++++|+++||||++|||+++|++|+++ |++|++++|+. +..++..+++...
T Consensus 2 ~~~~~~k~~lItGa~~gIG~~ia~~l~~~-G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 2 YSDLEGKVVVITGGSTGLGRAMAVRFGKE-KAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999999 88998888853 3333333333210
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
+ ......+.++.++++|+.+++.+++++++.|++ .++||++||..+. +.+.
T Consensus 81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~------ 154 (261)
T PRK08936 81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPL------ 154 (261)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCC------
Confidence 1 112234789999999999999999999999864 3799999998763 2222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+.++++.++.++.++ ||+||+|+||+|+|++....
T Consensus 155 -------------------------------~~~Y~~sKaa~~~~~~~la~e~~~~----gi~v~~v~pg~v~t~~~~~~ 199 (261)
T PRK08936 155 -------------------------------FVHYAASKGGVKLMTETLAMEYAPK----GIRVNNIGPGAINTPINAEK 199 (261)
T ss_pred -------------------------------CcccHHHHHHHHHHHHHHHHHHhhc----CeEEEEEEECcCCCCccccc
Confidence 2689999999999999999999877 99999999999999985421
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.||+++.+.+++|+.+ .+|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i--~~d~g~~ 251 (261)
T PRK08936 200 FADPKQRADVESMIPMGYIGKPEEIAAVAAWLASSEASYVTGITL--FADGGMT 251 (261)
T ss_pred cCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccCcEE--EECCCcc
Confidence 1157999999999999999999999988 6677654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=213.51 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=146.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh------------------HHHHHHHHHhc--------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK------------------GAEAVQVLKDR-------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~------------------~~~~~~~l~~~-------- 234 (484)
.++|++|++|||||++|||+++|++|+++ |++|++++|+.+. .+++.+.+.+.
T Consensus 4 ~~~l~~k~vlItG~s~gIG~~la~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 4 WLNLQGKIIIVTGGSSGIGLAIVKELLAN-GANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred cccCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45789999999999999999999999999 8999988876432 22333333221
Q ss_pred ---CC---------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ---AS---------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ---~~---------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++|+.++++|+.+++.+++++.++|++ .++||++||..+......
T Consensus 83 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 154 (266)
T PRK06171 83 NNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEG-------- 154 (266)
T ss_pred ECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCC--------
Confidence 10 12345889999999999999999999999865 479999999887422111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc-CCCcc----
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA-TNMSS---- 369 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~-T~m~~---- 369 (484)
...|++||+|+++++++++.|++++ |||||+|+||+++ |++..
T Consensus 155 ----------------------------~~~Y~~sK~a~~~l~~~la~e~~~~----gi~v~~v~pG~~~~t~~~~~~~~ 202 (266)
T PRK06171 155 ----------------------------QSCYAATKAALNSFTRSWAKELGKH----NIRVVGVAPGILEATGLRTPEYE 202 (266)
T ss_pred ----------------------------CchhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeccccccCCCcChhhh
Confidence 2789999999999999999999887 9999999999996 65521
Q ss_pred ----------------------CC---CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 370 ----------------------FM---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 370 ----------------------~~---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
.. ...+|+|+|+++.||+++.+++++|+.| .+||++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~itG~~i--~vdgg~ 263 (266)
T PRK06171 203 EALAYTRGITVEQLRAGYTKTSTIPLGRSGKLSEVADLVCYLLSDRASYITGVTT--NIAGGK 263 (266)
T ss_pred hhhccccCCCHHHHHhhhcccccccCCCCCCHHHhhhheeeeeccccccceeeEE--EecCcc
Confidence 00 1158999999999999999999999999 677765
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=210.36 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=141.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh---------------------------c
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---------------------------R 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~---------------------------~ 234 (484)
.+|++|++|||||++|||+++|++|+++ |++|++++|++. .++..+++.. .
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~-G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAE-GARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999743 2222222211 0
Q ss_pred ---------CC---------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ---------AS---------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ---------~~---------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
.. .....++++..+++|+.+++.+++.++|.|++ .++||++||..+... .
T Consensus 82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-~--------- 151 (260)
T PRK12823 82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI-N--------- 151 (260)
T ss_pred cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-C---------
Confidence 11 11234788999999999999999999999965 379999999876421 1
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-----
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS----- 369 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~----- 369 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|.|++..
T Consensus 152 ----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 199 (260)
T PRK12823 152 ----------------------------RVPYSAAKGGVNALTASLAFEYAEH----GIRVNAVAPGGTEAPPRRVPRNA 199 (260)
T ss_pred ----------------------------CCccHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCccCCcchhhHHhh
Confidence 1579999999999999999999877 999999999999998521
Q ss_pred ----CC-------------------CCCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 370 ----FM-------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 370 ----~~-------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
.. ...+|+|+|+.+.||+++.+.+++|+.+ .++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~--~v~gg 257 (260)
T PRK12823 200 APQSEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAILFLASDEASYITGTVL--PVGGG 257 (260)
T ss_pred ccccccccccHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCcccccccCcEE--eecCC
Confidence 00 1157999999999999999999999988 44543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=210.75 Aligned_cols=188 Identities=19% Similarity=0.256 Sum_probs=153.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKA-GATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999998 899999999987766555444221
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ......++++.++++|+.|++.+++++++.|++ .++||++||..+.....
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 154 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRE--------- 154 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCC---------
Confidence 0 112345889999999999999999999999965 48999999987632111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
+...|+++|+|++++++++++++.+. ||+||+|+||+|+|++....
T Consensus 155 ---------------------------~~~~Y~~sKaal~~l~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 203 (265)
T PRK07097 155 ---------------------------TVSAYAAAKGGLKMLTKNIASEYGEA----NIQCNGIGPGYIATPQTAPLREL 203 (265)
T ss_pred ---------------------------CCccHHHHHHHHHHHHHHHHHHhhhc----CceEEEEEeccccccchhhhhhc
Confidence 12789999999999999999999887 99999999999999975321
Q ss_pred --------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeeccc
Q psy8786 372 --------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPF 411 (484)
Q Consensus 372 --------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~~ 411 (484)
...+|+|+|..+.||+++.+.+++|+.+ .+++++..++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~gg~~~~~ 261 (265)
T PRK07097 204 QADGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLASDASNFVNGHIL--YVDGGILAYI 261 (265)
T ss_pred cccccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhCcccCCCCCCEE--EECCCceecc
Confidence 1257999999999999999999999988 6777775544
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=208.81 Aligned_cols=183 Identities=20% Similarity=0.252 Sum_probs=149.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||+++||||++|||+++++.|+++ |++|++++|+.+.+++..+++...
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGL-GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999 899999999987766554443210
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ ......++++..+++|+.+++.++++++|.|++ .++||++||.++......
T Consensus 84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------- 156 (257)
T PRK09242 84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRS------- 156 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCC-------
Confidence 0 012245789999999999999999999999965 489999999887432211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
...|++||++++.++++++.|+.+. ||+||+|+||+|+|++.....
T Consensus 157 -----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~i~Pg~i~t~~~~~~~~ 203 (257)
T PRK09242 157 -----------------------------GAPYGMTKAALLQMTRNLAVEWAED----GIRVNAVAPWYIRTPLTSGPLS 203 (257)
T ss_pred -----------------------------CcchHHHHHHHHHHHHHHHHHHHHh----CeEEEEEEECCCCCcccccccC
Confidence 2689999999999999999999877 999999999999999865321
Q ss_pred ----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|++.+++||+++...+++|+.+ .++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i--~~~gg~ 252 (257)
T PRK09242 204 DPDYYEQVIERTPMRRVGEPEEVAAAVAFLCMPAASYITGQCI--AVDGGF 252 (257)
T ss_pred ChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEE--EECCCe
Confidence 158999999999999988899999988 556654
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=209.46 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=143.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
-|.+|++||||||++||||++|.+||++ |+++++.|.+.+..++.++++++.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999 889999999999888888888741
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
......+++.++++++|+.|+|+.+++++|.|.+ +|+||+++|.+|..+...
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~g---------- 182 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAG---------- 182 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCcc----------
Confidence 2334567999999999999999999999999954 599999999999543332
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
..+|++||+|+.+|.++|..|+... ...||+...|+|++++|+|....
T Consensus 183 --------------------------l~~YcaSK~a~vGfhesL~~EL~~~-~~~~IktTlv~P~~i~Tgmf~~~~~~~~ 235 (300)
T KOG1201|consen 183 --------------------------LADYCASKFAAVGFHESLSMELRAL-GKDGIKTTLVCPYFINTGMFDGATPFPT 235 (300)
T ss_pred --------------------------chhhhhhHHHHHHHHHHHHHHHHhc-CCCCeeEEEEeeeeccccccCCCCCCcc
Confidence 2789999999999999999999864 55679999999999999998742
Q ss_pred --CCCCHHhHHHHHHHHH
Q psy8786 372 --GNVNIFDDSSTFNAFE 387 (484)
Q Consensus 372 --~~~~peevA~~~~~L~ 387 (484)
+..+|+++|+.++--.
T Consensus 236 l~P~L~p~~va~~Iv~ai 253 (300)
T KOG1201|consen 236 LAPLLEPEYVAKRIVEAI 253 (300)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 2289999999876543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=208.01 Aligned_cols=184 Identities=21% Similarity=0.212 Sum_probs=149.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
..++++|+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~~~~~k~ilItGasg~IG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 4 SINLEGKVALVTGASSGLGARFAQVLAQA-GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 889999999988776655543211
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----------CCEEEEEeCCCccccccc
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----------HARVVNLSSSAGHLSQIT 286 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----------~grIV~iSS~ag~~~~~~ 286 (484)
+ ......++++.++++|+.+++.+++++.+.|.+ .++||+++|..+.....
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~- 161 (258)
T PRK06949 83 EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLP- 161 (258)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCC-
Confidence 0 011234789999999999999999999988753 26999999987632111
Q ss_pred hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
+...|+++|++++.+++.++.++.++ ||+||+|+||+|+|+
T Consensus 162 -----------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~----~i~v~~v~pG~v~t~ 202 (258)
T PRK06949 162 -----------------------------------QIGLYCMSKAAVVHMTRAMALEWGRH----GINVNAICPGYIDTE 202 (258)
T ss_pred -----------------------------------CccHHHHHHHHHHHHHHHHHHHHHhc----CeEEEEEeeCCCcCC
Confidence 12689999999999999999999876 999999999999999
Q ss_pred CccCC----------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 367 MSSFM----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 367 m~~~~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
+.... ....|+|+++.+.||+++.+.+++|+.+ .+||++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i--~~dgg~ 257 (258)
T PRK06949 203 INHHHWETEQGQKLVSMLPRKRVGKPEDLDGLLLLLAADESQFINGAII--SADDGF 257 (258)
T ss_pred cchhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCCCcEE--EeCCCC
Confidence 85421 1278999999999999999999999998 677664
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=208.82 Aligned_cols=183 Identities=23% Similarity=0.232 Sum_probs=147.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH------------------------HHHHHHhc---
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE------------------------AVQVLKDR--- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~------------------------~~~~l~~~--- 234 (484)
+++++|+++||||++|||+++|++|+++ |++|++++|+.+..+. ..+++.+.
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAK-GARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR 89 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 5688999999999999999999999998 8999999998653211 11111110
Q ss_pred --------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 --------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+. .....++++..+++|+.|++.+++++.+.|++ .++||++||..+. +.+.
T Consensus 90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 157 (255)
T PRK06841 90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALER------------ 157 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCC------------
Confidence 10 11234788999999999999999999998865 4799999998763 3222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|+|++....
T Consensus 158 -------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~ 208 (255)
T PRK06841 158 -------------------------HVAYCASKAGVVGMTKVLALEWGPY----GITVNAISPTVVLTELGKKAWAGEKG 208 (255)
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHHHHHhh----CeEEEEEEeCcCcCcccccccchhHH
Confidence 2689999999999999999999887 99999999999999975421
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+++|+++.+.+++|+.+ .+||++.
T Consensus 209 ~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i--~~dgg~~ 253 (255)
T PRK06841 209 ERAKKLIPAGRFAYPEEIAAAALFLASDAAAMITGENL--VIDGGYT 253 (255)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEE--EECCCcc
Confidence 1268999999999999999999999998 6777764
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=208.28 Aligned_cols=179 Identities=23% Similarity=0.261 Sum_probs=146.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|++|||||++|||+++|+.|+++ |++|++++|+.+..++...++...
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVED-GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999999999 899999999877665554443310
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+ ......++++..+++|+.+++.+++.+++.|++ +++||++||..+. +.+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 148 (256)
T PRK08643 81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPE------------ 148 (256)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCC------------
Confidence 0 111234788999999999999999999998854 3799999998773 2222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||++++.+++.++.|+.++ ||+||+|+||+++|++....
T Consensus 149 -------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~i~Pg~v~t~~~~~~~~~~~~ 199 (256)
T PRK08643 149 -------------------------LAVYSSTKFAVRGLTQTAARDLASE----GITVNAYAPGIVKTPMMFDIAHQVGE 199 (256)
T ss_pred -------------------------CchhHHHHHHHHHHHHHHHHHhccc----CcEEEEEeeCCCcChhhhHHHhhhcc
Confidence 1689999999999999999998876 99999999999999975321
Q ss_pred --------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i--~vdgg~~ 254 (256)
T PRK08643 200 NAGKPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAGPDSDYITGQTI--IVDGGMV 254 (256)
T ss_pred ccCCCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhCccccCccCcEE--EeCCCee
Confidence 1157999999999999999999999999 6777653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=215.15 Aligned_cols=184 Identities=19% Similarity=0.170 Sum_probs=145.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~~~------------------------- 234 (484)
+.+++||++|||||++|||+++|++|+++ |++|++++++. +..++..++++..
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~-Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARL-GATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999 89999988753 3444444433210
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---------CCEEEEEeCCCccccccch
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---------HARVVNLSSSAGHLSQITN 287 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---------~grIV~iSS~ag~~~~~~~ 287 (484)
+. .....++|+..+++|+.|++.+++++.++|++ .|+||+++|.++......
T Consensus 86 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~- 164 (306)
T PRK07792 86 GLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVG- 164 (306)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCC-
Confidence 00 12345789999999999999999999998863 279999999887422211
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...|++||+|+++|++.++.|+.++ ||+||+|+||. .|+|
T Consensus 165 -----------------------------------~~~Y~asKaal~~l~~~la~e~~~~----gI~vn~i~Pg~-~t~~ 204 (306)
T PRK07792 165 -----------------------------------QANYGAAKAGITALTLSAARALGRY----GVRANAICPRA-RTAM 204 (306)
T ss_pred -----------------------------------CchHHHHHHHHHHHHHHHHHHhhhc----CeEEEEECCCC-CCch
Confidence 2689999999999999999999887 99999999994 8887
Q ss_pred ccCC------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 368 SSFM------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 368 ~~~~------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.... .+.+|+++++.+.||+++.+.+++|+.+ .++|++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~pe~va~~v~~L~s~~~~~~tG~~~--~v~gg~~ 255 (306)
T PRK07792 205 TADVFGDAPDVEAGGIDPLSPEHVVPLVQFLASPAAAEVNGQVF--IVYGPMV 255 (306)
T ss_pred hhhhccccchhhhhccCCCCHHHHHHHHHHHcCccccCCCCCEE--EEcCCeE
Confidence 5321 1257999999999999999999999998 5666653
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=208.59 Aligned_cols=181 Identities=20% Similarity=0.200 Sum_probs=142.3
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecC-----------chhHHHHHHHHHhc---------------
Q psy8786 183 DPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARD-----------KKKGAEAVQVLKDR--------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~-----------~~~~~~~~~~l~~~--------------- 234 (484)
+|+||++|||||+ +|||+++|++|+++ |++|++++|. .++.++..+++...
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~-G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEA-GADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHC-CCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 4789999999999 49999999999999 8898887532 11122222222110
Q ss_pred -----------------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-
Q psy8786 235 -----------------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL- 282 (484)
Q Consensus 235 -----------------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~- 282 (484)
+ ....+.++++..+++|+.+++.+++++++.|++ +|+||++||..+..
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 161 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGP 161 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCC
Confidence 1 112335789999999999999999999999864 47999999988732
Q ss_pred cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
.+. ...|++||+|+.+|+++++.++.++ ||+||+|+||+
T Consensus 162 ~~~-------------------------------------~~~Y~~sK~a~~~l~~~la~~~~~~----~i~v~~v~PG~ 200 (256)
T PRK12859 162 MVG-------------------------------------ELAYAATKGAIDALTSSLAAEVAHL----GITVNAINPGP 200 (256)
T ss_pred CCC-------------------------------------chHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEEcc
Confidence 221 2789999999999999999999887 99999999999
Q ss_pred ccCCCccCC------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 363 VATNMSSFM------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 363 V~T~m~~~~------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
++|++.... ...+|+|+|+.+.||+++.+++++|+.+ .+||++
T Consensus 201 i~t~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i--~~dgg~ 255 (256)
T PRK12859 201 TDTGWMTEEIKQGLLPMFPFGRIGEPKDAARLIKFLASEEAEWITGQII--HSEGGF 255 (256)
T ss_pred ccCCCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEE--EeCCCc
Confidence 999863221 1268999999999999999999999998 667664
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=208.13 Aligned_cols=184 Identities=22% Similarity=0.259 Sum_probs=146.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-------------------HHHHHHHHHhc--------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-------------------GAEAVQVLKDR-------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-------------------~~~~~~~l~~~-------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.++ .+++.+.+.+.
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 80 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAA-GATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLV 80 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4578999999999999999999999998 8899999987532 12223333211
Q ss_pred ---------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccc-cccchHHHHHHHhhccccc
Q psy8786 235 ---------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHL-SQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ---------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~ 301 (484)
.......+.++..+++|+.+++.+++++.+.|++ .++||++||..+.. .+.
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~---------------- 144 (252)
T PRK07856 81 NNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPG---------------- 144 (252)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCC----------------
Confidence 0112345789999999999999999999998864 37999999988742 222
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
...|++||+++++|++.++.|+++ .|+||+|+||+|+|++....
T Consensus 145 ---------------------~~~Y~~sK~a~~~l~~~la~e~~~-----~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~ 198 (252)
T PRK07856 145 ---------------------TAAYGAAKAGLLNLTRSLAVEWAP-----KVRVNAVVVGLVRTEQSELHYGDAEGIAAV 198 (252)
T ss_pred ---------------------CchhHHHHHHHHHHHHHHHHHhcC-----CeEEEEEEeccccChHHhhhccCHHHHHHH
Confidence 278999999999999999998864 39999999999999975321
Q ss_pred -------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 -------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 -------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
...+|+|+|+.++||+++.+++++|+.+ .+||++..+
T Consensus 199 ~~~~~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i--~vdgg~~~~ 242 (252)
T PRK07856 199 AATVPLGRLATPADIAWACLFLASDLASYVSGANL--EVHGGGERP 242 (252)
T ss_pred hhcCCCCCCcCHHHHHHHHHHHcCcccCCccCCEE--EECCCcchH
Confidence 1268999999999999999999999999 678777554
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=215.95 Aligned_cols=162 Identities=31% Similarity=0.368 Sum_probs=123.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||+++||||++|||+++|++|+++ |++|++++|+.++++++.+++...
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAA-GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999 899999999988877766655321
Q ss_pred -------------CC-----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC-CEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -------------AS-----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH-ARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -------------~~-----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~-grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. ...+.++++.++++|+.|++.+++.++|.|+++ ++||++||.++........++
T Consensus 89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~----- 163 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDL----- 163 (313)
T ss_pred HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccc-----
Confidence 10 112347899999999999999999999999754 899999998874322111000
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
. ....+. +...|+.||+|+++|++.|++++.. ...||+||+|+||+|+|++...
T Consensus 164 -------------~----~~~~~~--~~~~Y~~SK~a~~~~~~~la~~~~~--~~~gI~v~~v~PG~v~T~~~~~ 217 (313)
T PRK05854 164 -------------N----WERSYA--GMRAYSQSKIAVGLFALELDRRSRA--AGWGITSNLAHPGVAPTNLLAA 217 (313)
T ss_pred -------------c----ccccCc--chhhhHHHHHHHHHHHHHHHHHhhc--CCCCeEEEEEecceeccCcccc
Confidence 0 000011 2378999999999999999987642 2348999999999999998754
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-24 Score=214.28 Aligned_cols=180 Identities=24% Similarity=0.203 Sum_probs=134.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
..+++||+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~-G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQA-GAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 34678999999999999999999999998 899999999987766554443211
Q ss_pred --------CC----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 --------AS----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 --------~~----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
+. .....++++..+++|+.|++.++++++|.|++. ++||++||.++...+....+.
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~---------- 169 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDP---------- 169 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCcccc----------
Confidence 00 112336789999999999999999999998654 799999997653221110000
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------- 372 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------- 372 (484)
. ....+. +...|++||+|++.+++.+++++.+. ||+||+|+||+|.|++.+...
T Consensus 170 -----------~-~~~~~~--~~~~Y~~SK~a~~~~~~~la~~~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 231 (315)
T PRK06196 170 -----------H-FTRGYD--KWLAYGQSKTANALFAVHLDKLGKDQ----GVRAFSVHPGGILTPLQRHLPREEQVALG 231 (315)
T ss_pred -----------C-ccCCCC--hHHHHHHHHHHHHHHHHHHHHHhcCC----CcEEEEeeCCcccCCccccCChhhhhhhh
Confidence 0 000001 12689999999999999999988766 999999999999999864321
Q ss_pred ------------CCCHHhHHHHHHHHHhh
Q psy8786 373 ------------NVNIFDDSSTFNAFERV 389 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~ 389 (484)
..+|+++|..++|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 260 (315)
T PRK06196 232 WVDEHGNPIDPGFKTPAQGAATQVWAATS 260 (315)
T ss_pred hhhhhhhhhhhhcCCHhHHHHHHHHHhcC
Confidence 24688888888888853
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=206.78 Aligned_cols=172 Identities=13% Similarity=0.055 Sum_probs=137.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARL-GATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999 899999999988777665554321
Q ss_pred C-----------C-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 A-----------S-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 ~-----------~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ . .....+++.+.+++|+.+++.+++.++++|++ +|+||++||..+.. .
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~--~-------- 150 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ--D-------- 150 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC--C--------
Confidence 0 0 01123678889999999999999999999964 48999999976531 1
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
...|++||+|+.+|+++++.|++++ |||||+|+||+++|+......
T Consensus 151 -----------------------------~~~Y~asKaal~~~~~~la~el~~~----~Irvn~v~PG~i~t~~~~~~~~ 197 (227)
T PRK08862 151 -----------------------------LTGVESSNALVSGFTHSWAKELTPF----NIRVGGVVPSIFSANGELDAVH 197 (227)
T ss_pred -----------------------------cchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEecCcCcCCCccCHHH
Confidence 1679999999999999999999887 999999999999998422100
Q ss_pred CCC-HHhHHHHHHHHHhhhcccccccccc
Q psy8786 373 NVN-IFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 373 ~~~-peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
... -+|++....||++ +.|+||+.+.
T Consensus 198 ~~~~~~~~~~~~~~l~~--~~~~tg~~~~ 224 (227)
T PRK08862 198 WAEIQDELIRNTEYIVA--NEYFSGRVVE 224 (227)
T ss_pred HHHHHHHHHhheeEEEe--cccccceEEe
Confidence 011 2788888999996 7799999774
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=206.00 Aligned_cols=184 Identities=21% Similarity=0.287 Sum_probs=150.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||+++||||++|||+++|++|+++ |++|++++|+.+.+++..++++..
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGA-GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999998 899999999987666555544321
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+ ......++++..+++|+.+++.+++++++.|++ .++||++||..+. +.+.
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~-------- 156 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAG-------- 156 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCC--------
Confidence 0 111234788999999999999999999999854 4899999998873 3222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+++.++++.++.|+++. ||+||+|+||+++|++....
T Consensus 157 -----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~i~pg~v~t~~~~~~~~ 203 (256)
T PRK06124 157 -----------------------------DAVYPAAKQGLTGLMRALAAEFGPH----GITSNAIAPGYFATETNAAMAA 203 (256)
T ss_pred -----------------------------ccHhHHHHHHHHHHHHHHHHHHHHh----CcEEEEEEECCccCcchhhhcc
Confidence 1789999999999999999999877 99999999999999975322
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.||+++.+++++|+.+ .+||++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i--~~dgg~~ 253 (256)
T PRK06124 204 DPAVGPWLAQRTPLGRWGRPEEIAGAAVFLASPAASYVNGHVL--AVDGGYS 253 (256)
T ss_pred ChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCcCCCEE--EECCCcc
Confidence 1167999999999999999999999988 5676653
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=208.49 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=147.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++.+|+++||||++|||+++|+.|+++ |++|++++|+.+..++..+++...
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAE-GARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 478899999999999999999999999 899999999887665544433211
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
. ......++++..+++|+.+++.+++++.+.|.+ +++||++||..+. +.+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 149 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEAL------------ 149 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCC------------
Confidence 0 111234789999999999999999999998854 3799999997763 2221
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||++++++++++++|+.++ ||+||+|+||+|+|++....
T Consensus 150 -------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~i~pg~v~t~~~~~~~~~~~~ 200 (257)
T PRK07067 150 -------------------------VSHYCATKAAVISYTQSAALALIRH----GINVNAIAPGVVDTPMWDQVDALFAR 200 (257)
T ss_pred -------------------------CchhhhhHHHHHHHHHHHHHHhccc----CeEEEEEeeCcccchhhhhhhhhhhh
Confidence 2789999999999999999999876 99999999999999974321
Q ss_pred --------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 --------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 --------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.||+++.+.+++|+++ .++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~--~v~gg~ 254 (257)
T PRK07067 201 YENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASADADYIVAQTY--NVDGGN 254 (257)
T ss_pred ccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcccccccCcEE--eecCCE
Confidence 1157999999999999999999999998 566654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=206.44 Aligned_cols=184 Identities=25% Similarity=0.312 Sum_probs=145.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH------------------------Hhc--
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL------------------------KDR-- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l------------------------~~~-- 234 (484)
.++++||+++||||++|||+++|++|+++ |++|++++|+.++.++..+++ .+.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAE-GWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999998 899999988765444332221 110
Q ss_pred ---------CCC--------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ---------AST--------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~~~--------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+.. ....++++..+++|+.+++.+++++.|.|++ .++||++||..+......
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~---------- 153 (255)
T PRK05717 84 RLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPD---------- 153 (255)
T ss_pred CCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCC----------
Confidence 111 1245789999999999999999999999854 589999999887422111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|++||+|++++++.++.++.. +|+||+|+||+++|++....
T Consensus 154 --------------------------~~~Y~~sKaa~~~~~~~la~~~~~-----~i~v~~i~Pg~i~t~~~~~~~~~~~ 202 (255)
T PRK05717 154 --------------------------TEAYAASKGGLLALTHALAISLGP-----EIRVNAVSPGWIDARDPSQRRAEPL 202 (255)
T ss_pred --------------------------CcchHHHHHHHHHHHHHHHHHhcC-----CCEEEEEecccCcCCccccccchHH
Confidence 168999999999999999998864 59999999999999874321
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|++..+.|++++...+++|+.+ .++|++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~~gg~~ 248 (255)
T PRK05717 203 SEADHAQHPAGRVGTVEDVAAMVAWLLSRQAGFVTGQEF--VVDGGMT 248 (255)
T ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEE--EECCCce
Confidence 1258999999999999988899999988 5566654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=211.03 Aligned_cols=175 Identities=18% Similarity=0.188 Sum_probs=144.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|+.|+++ |++|++++|+.+++++..+++...
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHAR-GAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999998 899999999988776655544210
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccc-cccchHHHHHHHhh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHL-SQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~-~~~~~~~~~~~~~~ 296 (484)
.......++++.++++|+.|++.++++++|.|.+ .|+||++||.++.. .+.
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 152 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPG----------- 152 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCC-----------
Confidence 0112345789999999999999999999998854 58999999988742 222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|++||+++++|+++++.|++.+ ||+||+|+||+++|++....
T Consensus 153 --------------------------~~~Y~asKaal~~~~~~l~~e~~~~----gi~v~~v~Pg~v~T~~~~~~~~~~~ 202 (296)
T PRK05872 153 --------------------------MAAYCASKAGVEAFANALRLEVAHH----GVTVGSAYLSWIDTDLVRDADADLP 202 (296)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHHHHH----CcEEEEEecCcccchhhhhccccch
Confidence 2789999999999999999999987 99999999999999986531
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhcccccccc
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQ 398 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~ 398 (484)
...+|+|+++.+.++++....+++|..
T Consensus 203 ~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~~~~~i~~~~ 243 (296)
T PRK05872 203 AFRELRARLPWPLRRTTSVEKCAAAFVDGIERRARRVYAPR 243 (296)
T ss_pred hHHHHHhhCCCcccCCCCHHHHHHHHHHHHhcCCCEEEchH
Confidence 126899999999999988888887764
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=204.49 Aligned_cols=181 Identities=21% Similarity=0.194 Sum_probs=146.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc----
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR---- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~---- 234 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.+..++..+++. +.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAE-GARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999 8999999998765544333221 10
Q ss_pred -------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcccc
Q psy8786 235 -------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~ 300 (484)
+. .....++++..+++|+.+++.+++++.|.|++.+++|+++|.++. +.+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~--------------- 146 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPN--------------- 146 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCC---------------
Confidence 00 122347889999999999999999999999877899999987763 2222
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------- 371 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------- 371 (484)
...|+++|+++++++++++.|++.+ ||+||+|+||.++|++....
T Consensus 147 ----------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~i~pg~~~t~~~~~~~~~~~~~~~ 200 (249)
T PRK06500 147 ----------------------SSVYAASKAALLSLAKTLSGELLPR----GIRVNAVSPGPVQTPLYGKLGLPEATLDA 200 (249)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCcCCCHHHHhhccCccchHH
Confidence 2789999999999999999998776 99999999999999974321
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+++.+.|++++.+.+++|+.+ .++|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i--~~~gg~ 246 (249)
T PRK06500 201 VAAQIQALVPLGRFGTPEEIAKAVLYLASDESAFIVGSEI--IVDGGM 246 (249)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCeE--EECCCc
Confidence 1258999999999999988899999998 667664
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=204.16 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=140.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHH------------------------HHHHHHhc---
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAE------------------------AVQVLKDR--- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~------------------------~~~~l~~~--- 234 (484)
.+++|++|||||++|||+++|+.|+++ |++|+++++ +.+..++ +.+++.+.
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFARE-GARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGK 80 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999998 888887654 3332222 22221110
Q ss_pred ---------CC------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHH
Q psy8786 235 ---------AS------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 ---------~~------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
.. .....++++..+++|+.+++.+++++++.|.+ .++||+++|..+.....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~------ 154 (253)
T PRK08642 81 PITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVV------ 154 (253)
T ss_pred CCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC------
Confidence 00 01134778899999999999999999998854 38999999876521111
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||+|++++++.++++++++ |||||+|+||+++|+.....
T Consensus 155 ------------------------------~~~~Y~~sK~a~~~l~~~la~~~~~~----~i~v~~i~pG~v~t~~~~~~ 200 (253)
T PRK08642 155 ------------------------------PYHDYTTAKAALLGLTRNLAAELGPY----GITVNMVSGGLLRTTDASAA 200 (253)
T ss_pred ------------------------------CccchHHHHHHHHHHHHHHHHHhCcc----CeEEEEEeecccCCchhhcc
Confidence 12689999999999999999998877 99999999999999754311
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .+||++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~--~vdgg~ 250 (253)
T PRK08642 201 TPDEVFDLIAATTPLRKVTTPQEFADAVLFFASPWARAVTGQNL--VVDGGL 250 (253)
T ss_pred CCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCchhcCccCCEE--EeCCCe
Confidence 1278999999999999999999999999 677765
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=204.56 Aligned_cols=180 Identities=17% Similarity=0.114 Sum_probs=142.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
||+++||||++|||+++|+.|+++ |++|++++|+.+++++..+++...
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEE-GANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 589999999999999999999998 889999999877666554443210
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
+ ......++|+.++++|+.+++.+++++++.|.+ .++||++||..+......
T Consensus 80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~------------ 147 (252)
T PRK07677 80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPG------------ 147 (252)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCC------------
Confidence 1 012345789999999999999999999998743 489999999887422111
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC-CccC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN-MSSF------- 370 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~-m~~~------- 370 (484)
...|++||+|+++|+++|+.|+.+. .||+||+|+||+|+|+ +...
T Consensus 148 ------------------------~~~Y~~sKaa~~~~~~~la~e~~~~---~gi~v~~v~PG~v~~~~~~~~~~~~~~~ 200 (252)
T PRK07677 148 ------------------------VIHSAAAKAGVLAMTRTLAVEWGRK---YGIRVNAIAPGPIERTGGADKLWESEEA 200 (252)
T ss_pred ------------------------CcchHHHHHHHHHHHHHHHHHhCcc---cCeEEEEEeecccccccccccccCCHHH
Confidence 1689999999999999999998642 3999999999999953 2111
Q ss_pred ----------CCCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 ----------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 ----------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
....+|+|+++.+.||+++.+.+++|+.+ .+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~~gg~ 245 (252)
T PRK07677 201 AKRTIQSVPLGRLGTPEEIAGLAYFLLSDEAAYINGTCI--TMDGGQ 245 (252)
T ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHcCccccccCCCEE--EECCCe
Confidence 01268999999999999998999999988 566654
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=205.34 Aligned_cols=184 Identities=21% Similarity=0.204 Sum_probs=147.4
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|+++|+||++|||||++|||+++|++|+++ |++|++++|++++. +..+++...
T Consensus 1 ~~~~l~~~~ilItGasggiG~~la~~l~~~-G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 1 MDLNLKDKVVIVTGGASGIGAAISLRLAEE-GAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTV 78 (258)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHc-CCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 357789999999999999999999999999 89999999987654 333332210
Q ss_pred -------------C-----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -------------A-----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -------------~-----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.+++.+++.+.+.+++ .++||++||..+.....
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---------- 148 (258)
T PRK08628 79 AKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQG---------- 148 (258)
T ss_pred HhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCC----------
Confidence 0 011223789999999999999999999998865 48999999987742211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
+...|++||++++++++.++.|+.++ ||+||+|+||.|+|++....
T Consensus 149 --------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~----~i~v~~v~pg~v~t~~~~~~~~~~ 198 (258)
T PRK08628 149 --------------------------GTSGYAAAKGAQLALTREWAVALAKD----GVRVNAVIPAEVMTPLYENWIATF 198 (258)
T ss_pred --------------------------CCchhHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCccCCHHHHHHhhhc
Confidence 12789999999999999999998876 99999999999999974210
Q ss_pred ------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++|++++.+.+++|+.+ .++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~gg~ 250 (258)
T PRK08628 199 DDPEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSERSSHTTGQWL--FVDGGY 250 (258)
T ss_pred cCHHHHHHHHHhcCCccccCCCHHHHHHHHHHHhChhhccccCceE--EecCCc
Confidence 1267999999999999999999999988 566665
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=201.00 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=141.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----------------------------- 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~----------------------------- 233 (484)
+|++|+++||||++|||+++|+.|+++ |++|++++|++++.++..+++..
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAA-GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 468899999999999999999999998 89999999988665544333210
Q ss_pred -----c--------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHH
Q psy8786 234 -----R--------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 234 -----~--------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
. +. .....++++..+++|+.|++.+++++++.|++ .+++|+++|..+. +.+.
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----- 156 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAY----- 156 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCC-----
Confidence 0 00 11223678889999999999999999999865 4799999997763 2211
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|++.++++++.|+.++ .+||||+|+||+|+|++...
T Consensus 157 --------------------------------~~~Y~~sKaa~~~~~~~la~e~~~~---~~i~v~~v~pG~v~t~~~~~ 201 (239)
T PRK08703 157 --------------------------------WGGFGASKAALNYLCKVAADEWERF---GNLRANVLVPGPINSPQRIK 201 (239)
T ss_pred --------------------------------ccchHHhHHHHHHHHHHHHHHhccC---CCeEEEEEecCcccCccccc
Confidence 1689999999999999999998764 26999999999999997543
Q ss_pred C-------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 371 M-------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 371 ~-------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ...+++|+++.+.|++++.+.++||++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 237 (239)
T PRK08703 202 SHPGEAKSERKSYGDVLPAFVWWASAESKGRSGEIV 237 (239)
T ss_pred cCCCCCccccCCHHHHHHHHHHHhCccccCcCCeEe
Confidence 2 1267899999999999999999999987
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=204.62 Aligned_cols=184 Identities=20% Similarity=0.297 Sum_probs=147.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|+++||||++|||+++|++|+++ |++|++++|+.+.+++..+++...
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999998 899999999877655443333210
Q ss_pred ----------C--------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 ----------A--------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 ----------~--------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
. ......++++..+++|+.|++.+++++++.|++ +|+||++||.++. ..+.
T Consensus 83 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~--------- 153 (264)
T PRK07576 83 EFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPM--------- 153 (264)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCC---------
Confidence 0 011234678899999999999999999999864 5799999998763 2222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc-CCCccCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA-TNMSSFM-- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~-T~m~~~~-- 371 (484)
...|++||+|+++|+++++.++..+ ||+||+|+||+++ |+.....
T Consensus 154 ----------------------------~~~Y~asK~a~~~l~~~la~e~~~~----gi~v~~v~pg~~~~t~~~~~~~~ 201 (264)
T PRK07576 154 ----------------------------QAHVCAAKAGVDMLTRTLALEWGPE----GIRVNSIVPGPIAGTEGMARLAP 201 (264)
T ss_pred ----------------------------ccHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecccccCcHHHhhccc
Confidence 2689999999999999999999877 9999999999997 6532110
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+.|++++.+.+++|+.+ .+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~~~gg~~ 251 (264)
T PRK07576 202 SPELQAAVAQSVPLKRNGTKQDIANAALFLASDMASYITGVVL--PVDGGWS 251 (264)
T ss_pred CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCccCCEE--EECCCcc
Confidence 1257999999999999988899999998 6777763
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=202.40 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=137.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH----------------------HHHHHhc---------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA----------------------VQVLKDR--------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~----------------------~~~l~~~--------- 234 (484)
+|++|||||++|||+++|++|+++ |++|++++|+.+...+. .+++.+.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 80 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ-GQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH 80 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence 478999999999999999999998 89999999986532221 1111111
Q ss_pred --C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEeCCCcc-ccccchHHHHHHHhhccccc
Q psy8786 235 --A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGH-LSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 --~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~ 301 (484)
+ ......++|+.++++|+.+++.+++.+++.|++ .++||+++|..+. +.+.
T Consensus 81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~---------------- 144 (236)
T PRK06483 81 NASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDK---------------- 144 (236)
T ss_pred CCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCC----------------
Confidence 1 112235889999999999999999999999865 3699999998763 2222
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
...|++||+|+++|+++++.|+++ +||||+|+||+|.|+.....
T Consensus 145 ---------------------~~~Y~asKaal~~l~~~~a~e~~~-----~irvn~v~Pg~~~~~~~~~~~~~~~~~~~~ 198 (236)
T PRK06483 145 ---------------------HIAYAASKAALDNMTLSFAAKLAP-----EVKVNSIAPALILFNEGDDAAYRQKALAKS 198 (236)
T ss_pred ---------------------CccHHHHHHHHHHHHHHHHHHHCC-----CcEEEEEccCceecCCCCCHHHHHHHhccC
Confidence 268999999999999999999864 59999999999988643210
Q ss_pred ---CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.||++ +.+++|+.+ .+||++.
T Consensus 199 ~~~~~~~~~~va~~~~~l~~--~~~~~G~~i--~vdgg~~ 234 (236)
T PRK06483 199 LLKIEPGEEEIIDLVDYLLT--SCYVTGRSL--PVDGGRH 234 (236)
T ss_pred ccccCCCHHHHHHHHHHHhc--CCCcCCcEE--EeCcccc
Confidence 12689999999999996 689999998 6677653
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=202.87 Aligned_cols=180 Identities=19% Similarity=0.187 Sum_probs=143.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~------------------------------ 234 (484)
+|++|||||++|||+++|++|+++ |++|+++++ +.+.+++..+++...
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ-GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999 899988765 444444443333211
Q ss_pred --------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 --------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+ ......++++..+++|+.+++.+++++.+.|.+ +++||++||..+.....
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~------------ 148 (256)
T PRK12743 81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLP------------ 148 (256)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCC------------
Confidence 0 112244789999999999999999999998854 37999999987632211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
+...|+++|+++.+++++++.++.++ ||+||+|+||+++|++....
T Consensus 149 ------------------------~~~~Y~~sK~a~~~l~~~la~~~~~~----~i~v~~v~Pg~~~t~~~~~~~~~~~~ 200 (256)
T PRK12743 149 ------------------------GASAYTAAKHALGGLTKAMALELVEH----GILVNAVAPGAIATPMNGMDDSDVKP 200 (256)
T ss_pred ------------------------CcchhHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEeCCccCccccccChHHHH
Confidence 12789999999999999999999887 99999999999999975421
Q ss_pred ---------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.|++++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~~dgg~~ 244 (256)
T PRK12743 201 DSRPGIPLGRPGDTHEIASLVAWLCSEGASYTTGQSL--IVDGGFM 244 (256)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEE--EECCCcc
Confidence 1268999999999999999999999998 6777754
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=205.60 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=138.2
Q ss_pred EEEEEcCCchHHHHHHHHHHh----cCCCeEEEEecCchhHHHHHHHHHh-----c------------------------
Q psy8786 188 VAVVTGANKGLGFGIVKSLCE----QFDGYIYLTARDKKKGAEAVQVLKD-----R------------------------ 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~----~gga~Vvl~~R~~~~~~~~~~~l~~-----~------------------------ 234 (484)
+++||||++|||+++|++|++ + |++|++++|+++.+++..+++.. .
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSP-GSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccC-CcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 699999999999999999997 5 88999999998777666555432 0
Q ss_pred ---------------CC-C---C-----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEeCCCcc-cccc
Q psy8786 235 ---------------AS-T---V-----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGH-LSQI 285 (484)
Q Consensus 235 ---------------~~-~---~-----~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iSS~ag~-~~~~ 285 (484)
+. . . ...++++..+++|+.|++.++++++|.|++ .++||++||.++. +.+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~ 160 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKG 160 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCC
Confidence 00 0 0 123678899999999999999999999874 2689999998773 2222
Q ss_pred chHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
...|++||+|+++|+++|+.|++++ ||+||+|+||+|+|
T Consensus 161 -------------------------------------~~~Y~asKaal~~l~~~la~e~~~~----~i~v~~v~PG~v~T 199 (256)
T TIGR01500 161 -------------------------------------WALYCAGKAARDMLFQVLALEEKNP----NVRVLNYAPGVLDT 199 (256)
T ss_pred -------------------------------------chHHHHHHHHHHHHHHHHHHHhcCC----CeEEEEecCCcccc
Confidence 2789999999999999999999876 99999999999999
Q ss_pred CCccCC--------------------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 366 NMSSFM--------------------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 366 ~m~~~~--------------------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
+|.+.. ...+|+|+|+.++++++ .+++++|+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~~-~~~~~~G~~~~ 253 (256)
T TIGR01500 200 DMQQQVREESVDPDMRKGLQELKAKGKLVDPKVSAQKLLSLLE-KDKFKSGAHVD 253 (256)
T ss_pred hHHHHHHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCcCCcceee
Confidence 986421 13699999999999996 57899999763
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=200.06 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=144.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH----------------HHHHHHHHhc-------CC---
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG----------------AEAVQVLKDR-------AS--- 236 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~----------------~~~~~~l~~~-------~~--- 236 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.... +++.+.+... +.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~~~~ 80 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQ-GAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGILDD 80 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHC-CCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCCCCC
Confidence 468899999999999999999999999 89999998864211 1111111110 10
Q ss_pred ----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 237 ----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 237 ----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
.....++++..+++|+.+++.+++++++.+++ .++||++||..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------------------ 136 (235)
T PRK06550 81 YKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGG------------------------ 136 (235)
T ss_pred CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCC------------------------
Confidence 12235789999999999999999999998864 479999999887422111
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-C----------------C
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-G----------------N 373 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-~----------------~ 373 (484)
...|+++|+++++++++++.|+.++ ||+||+|+||+++|++.... . .
T Consensus 137 ------------~~~Y~~sK~a~~~~~~~la~~~~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (235)
T PRK06550 137 ------------GAAYTASKHALAGFTKQLALDYAKD----GIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRW 200 (235)
T ss_pred ------------CcccHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCC
Confidence 2689999999999999999999876 99999999999999985421 1 2
Q ss_pred CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 374 VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 374 ~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.+|+|+|+.+.|++++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~a~~~~~l~s~~~~~~~g~~~--~~~gg~~ 233 (235)
T PRK06550 201 AEPEEVAELTLFLASGKADYMQGTIV--PIDGGWT 233 (235)
T ss_pred CCHHHHHHHHHHHcChhhccCCCcEE--EECCcee
Confidence 58999999999999999999999998 6777763
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=204.21 Aligned_cols=185 Identities=22% Similarity=0.273 Sum_probs=145.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.+. ++..+++...
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~-G~~Vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARH-GANLILLDISPEI-EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHH-HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999 8999999998642 2222222110
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
.......++++..+++|+.+++.+++++++.+++ .++||++||..+...+..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~---------- 150 (263)
T PRK08226 81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADP---------- 150 (263)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCC----------
Confidence 0112234778899999999999999999998854 479999999766311111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
+...|+++|+++++++++++.++.++ ||+||+|+||+++|++....
T Consensus 151 -------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~----~i~v~~i~pg~v~t~~~~~~~~~~~ 201 (263)
T PRK08226 151 -------------------------GETAYALTKAAIVGLTKSLAVEYAQS----GIRVNAICPGYVRTPMAESIARQSN 201 (263)
T ss_pred -------------------------CcchHHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCcccCHHHHhhhhhcc
Confidence 12689999999999999999998876 99999999999999975321
Q ss_pred ------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 ------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 ------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .+||+...|
T Consensus 202 ~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i--~~dgg~~~~ 256 (263)
T PRK08226 202 PEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQN--VIDGGSTLP 256 (263)
T ss_pred CCCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCchhcCCcCceE--eECCCcccC
Confidence 0158999999999999999999999998 778887554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=210.32 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=139.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+++++++..++++..
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~-G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARR-GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999 899999999988877666655321
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
.......++++..+++|+.|++.++++++|+|++ .|+||+++|..+. ..+.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~--------- 152 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPY--------- 152 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCC---------
Confidence 1122334788999999999999999999999975 4899999998874 2222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+.+|+++|+.|+.++ .||+|++|+||+|+|++....
T Consensus 153 ----------------------------~~~Y~asKaal~~~~~sL~~El~~~---~gI~V~~v~Pg~v~T~~~~~~~~~ 201 (330)
T PRK06139 153 ----------------------------AAAYSASKFGLRGFSEALRGELADH---PDIHVCDVYPAFMDTPGFRHGANY 201 (330)
T ss_pred ----------------------------chhHHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEecCCccCccccccccc
Confidence 2789999999999999999998652 389999999999999986421
Q ss_pred ---------CCCCHHhHHHHHHHHHhh-hcccccc
Q psy8786 372 ---------GNVNIFDDSSTFNAFERV-ISHFLIG 396 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~-~a~~itG 396 (484)
...+|+++|+.+++++.. ...+..|
T Consensus 202 ~~~~~~~~~~~~~pe~vA~~il~~~~~~~~~~~~g 236 (330)
T PRK06139 202 TGRRLTPPPPVYDPRRVAKAVVRLADRPRATTTVG 236 (330)
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHhCCCCEEEcC
Confidence 126899999999887743 3334444
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=205.06 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=140.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-------HHHHHHHHHhc--------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-------GAEAVQVLKDR-------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-------~~~~~~~l~~~-------------------- 234 (484)
++++||+++||||++|||+++|+.|+++ |++|++++|+.+. +++..+++...
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARD-GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 3468899999999999999999999999 8999999997542 22222222110
Q ss_pred ------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchH
Q psy8786 235 ------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNL 288 (484)
Q Consensus 235 ------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~ 288 (484)
.......++++..+++|+.+++.+++++.|.|++ +++|++++|..+......
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~-- 158 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKWF-- 158 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccccc--
Confidence 0112234789999999999999999999999865 479999998765221100
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC-cccCCC
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG-YVATNM 367 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG-~V~T~m 367 (484)
. +...|++||+|+++++++++.|++++ ||+||+|+|| .++|++
T Consensus 159 ------------------------------~--~~~~Y~~sK~a~~~~~~~la~el~~~----~I~v~~i~Pg~~i~t~~ 202 (273)
T PRK08278 159 ------------------------------A--PHTAYTMAKYGMSLCTLGLAEEFRDD----GIAVNALWPRTTIATAA 202 (273)
T ss_pred ------------------------------C--CcchhHHHHHHHHHHHHHHHHHhhhc----CcEEEEEeCCCccccHH
Confidence 0 12789999999999999999999887 9999999999 689985
Q ss_pred ccCC--------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 368 SSFM--------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 368 ~~~~--------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
.+.. ...+|+++|+.+++++++...+++|+.+
T Consensus 203 ~~~~~~~~~~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~ 242 (273)
T PRK08278 203 VRNLLGGDEAMRRSRTPEIMADAAYEILSRPAREFTGNFL 242 (273)
T ss_pred HHhcccccccccccCCHHHHHHHHHHHhcCccccceeEEE
Confidence 4422 1269999999999999999999999977
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=200.98 Aligned_cols=182 Identities=24% Similarity=0.218 Sum_probs=138.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC----chhHHHHHHHHHhc-----------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD----KKKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~----~~~~~~~~~~l~~~----------------------- 234 (484)
.++++|+++||||++|||+++|+.|+++ |++|++++++ .+..++..+++...
T Consensus 4 ~~l~~k~vlItGa~~gIG~~~a~~l~~~-G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 4 HSLKGKVVLIAGGAKNLGGLIARDLAAQ-GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHC-CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence 4578999999999999999999999998 8886665432 22233333222110
Q ss_pred ---------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEE-eCCCccccccchHHHHH
Q psy8786 235 ---------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNL-SSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 ---------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~i-SS~ag~~~~~~~~~~~~ 292 (484)
+ ......++++.++++|+.+++.+++++.+.|++.++|+++ +|..+...+.
T Consensus 83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~~------- 155 (257)
T PRK12744 83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTPF------- 155 (257)
T ss_pred HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCCC-------
Confidence 0 1123457899999999999999999999999877888876 4444432221
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++|++++++|+.++ ||+||+|+||++.|++....
T Consensus 156 ------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~v~pg~v~t~~~~~~~ 201 (257)
T PRK12744 156 ------------------------------YSAYAGSKAPVEHFTRAASKEFGAR----GISVTAVGPGPMDTPFFYPQE 201 (257)
T ss_pred ------------------------------cccchhhHHHHHHHHHHHHHHhCcC----ceEEEEEecCccccchhcccc
Confidence 1689999999999999999999876 99999999999999865210
Q ss_pred --------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+..+|+|+++.+.||+++ +.+++|+.+ .+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~g~~~--~~~gg~~ 255 (257)
T PRK12744 202 GAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFLVTD-GWWITGQTI--LINGGYT 255 (257)
T ss_pred ccchhhcccccccccccccCCCCCHHHHHHHHHHhhcc-cceeecceE--eecCCcc
Confidence 125799999999999985 679999988 6666653
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=199.02 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=141.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHh---------------------------c-
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKD---------------------------R- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~---------------------------~- 234 (484)
|++|+++||||++|||+++|++|+++ |++|++. +++.+..++..+++.. .
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKD-GFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 8887774 4443333322222211 0
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+ ......++++.++++|+.+++.+++++++.+++. ++||++||..+......
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~---------- 149 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFG---------- 149 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCC----------
Confidence 0 0112347899999999999999999999988654 79999999876322111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|+++|+++++++++++.++... ||++|+|+||++.|++....
T Consensus 150 --------------------------~~~y~~sK~a~~~~~~~l~~~~~~~----gi~v~~i~pg~~~t~~~~~~~~~~~ 199 (246)
T PRK12938 150 --------------------------QTNYSTAKAGIHGFTMSLAQEVATK----GVTVNTVSPGYIGTDMVKAIRPDVL 199 (246)
T ss_pred --------------------------ChhHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEecccCCchhhhcChHHH
Confidence 2789999999999999999998876 99999999999999986432
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++++++.+.||+++.+.+++|+.+ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~--~~~~g~ 243 (246)
T PRK12938 200 EKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADF--SLNGGL 243 (246)
T ss_pred HHHHhcCCccCCcCHHHHHHHHHHHcCcccCCccCcEE--EECCcc
Confidence 1278999999999999999999999998 556654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=197.13 Aligned_cols=183 Identities=22% Similarity=0.233 Sum_probs=148.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++++|+++||||++|||+++|+.|+++ |++|++++|++++.++..++++..
T Consensus 3 ~~~~~~~vlItGa~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 3 SNLAGKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998 899999999887666554443211
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......+.++..+++|+.+++.+++++.+.+.+ .+++|++||..+......
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 152 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPK--------- 152 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCC---------
Confidence 0 012234678899999999999999999998866 579999999776322111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
...|+++|++++++++.++.++... ||+|++|+||+++|++.....
T Consensus 153 ---------------------------~~~y~~sK~~~~~~~~~l~~~~~~~----~i~v~~v~pg~v~t~~~~~~~~~~ 201 (250)
T PRK12939 153 ---------------------------LGAYVASKGAVIGMTRSLARELGGR----GITVNAIAPGLTATEATAYVPADE 201 (250)
T ss_pred ---------------------------cchHHHHHHHHHHHHHHHHHHHhhh----CEEEEEEEECCCCCccccccCChH
Confidence 1679999999999999999998876 999999999999999864322
Q ss_pred -------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++|+++.+++++++...+++|+.+ .+||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i--~~~gg~ 247 (250)
T PRK12939 202 RHAYYLKGRALERLQVPDDVAGAVLFLLSDAARFVTGQLL--PVNGGF 247 (250)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCccCcEE--EECCCc
Confidence 168899999999999988889999998 667664
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-23 Score=207.32 Aligned_cols=197 Identities=21% Similarity=0.190 Sum_probs=135.0
Q ss_pred EEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHhc----------------------------------
Q psy8786 190 VVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKDR---------------------------------- 234 (484)
Q Consensus 190 LITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~~---------------------------------- 234 (484)
|||||++|||+++|++|+++ | ++|++++|+.+++++..+++...
T Consensus 1 lITGas~GIG~aia~~l~~~-G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKALAET-GKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 69999999999999999999 7 89999999887666555444210
Q ss_pred ----CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEeCCCcccccc----c----hHHHH
Q psy8786 235 ----AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGHLSQI----T----NLELK 291 (484)
Q Consensus 235 ----~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iSS~ag~~~~~----~----~~~~~ 291 (484)
+. ...+.++++.++++|+.|++.++++++|.|++ +|+||++||.++..... . ..++.
T Consensus 80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
T PLN00015 80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 159 (308)
T ss_pred EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence 11 11245789999999999999999999999864 37999999988732110 0 00000
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cCCCccC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-ATNMSSF 370 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T~m~~~ 370 (484)
............ ... .. ..+. +..+|++||+|+..+++.+++++.+. .||+||+|+||+| .|+|.+.
T Consensus 160 ~~~~~~~~~~~~--~~~----~~-~~~~--~~~aY~~SK~a~~~~~~~la~~~~~~---~gi~v~~v~PG~v~~t~~~~~ 227 (308)
T PLN00015 160 GLAGGLNGLNSS--AMI----DG-GEFD--GAKAYKDSKVCNMLTMQEFHRRYHEE---TGITFASLYPGCIATTGLFRE 227 (308)
T ss_pred hhhcccCCccch--hhc----cc-cCCc--HHHHHhHhHHHHHHHHHHHHHhhccc---CCeEEEEecCCcccCcccccc
Confidence 000000000000 000 00 0011 23789999999999999999998642 3899999999999 7998654
Q ss_pred C-----------------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 371 M-----------------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 371 ~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ...+|++.|+.+++++++.....+|+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~ 273 (308)
T PLN00015 228 HIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYW 273 (308)
T ss_pred ccHHHHHHHHHHHHHHhcccccHHHhhhhhhhhccccccCCCcccc
Confidence 2 1367899999999888776666677654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=199.80 Aligned_cols=181 Identities=19% Similarity=0.152 Sum_probs=146.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+++|+++||||++|||+++|++|+++ |++|++++|++++.++..+++...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARA-GADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999 899999999987666555444310
Q ss_pred ---------CC--C-----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------AS--T-----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~~--~-----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.. . ....++++..+++|+.+++.+++++.+.|++ .++||++||..+.....
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~------------ 149 (258)
T PRK07890 82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQP------------ 149 (258)
T ss_pred CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCC------------
Confidence 10 0 2235889999999999999999999998865 47999999987632111
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
+...|+++|++++.+++.++.+++++ ||+||+|+||++.|++....
T Consensus 150 ------------------------~~~~Y~~sK~a~~~l~~~~a~~~~~~----~i~v~~v~pg~v~~~~~~~~~~~~~~ 201 (258)
T PRK07890 150 ------------------------KYGAYKMAKGALLAASQSLATELGPQ----GIRVNSVAPGYIWGDPLKGYFRHQAG 201 (258)
T ss_pred ------------------------CcchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEeCCccCcHHHHHHhhhccc
Confidence 12689999999999999999999887 99999999999999864210
Q ss_pred --------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 --------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 --------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|++++++|++++...+++|+.+ .+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i--~~~gg~ 255 (258)
T PRK07890 202 KYGVTVEQIYAETAANSDLKRLPTDDEVASAVLFLASDLARAITGQTL--DVNCGE 255 (258)
T ss_pred ccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHHHcCHhhhCccCcEE--EeCCcc
Confidence 1157899999999999988889999988 566654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=221.27 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=148.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
.+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARA-GDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRID 81 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999 899999999887766554443211
Q ss_pred ------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--C-CEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 ------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--H-ARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~-grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
+. .....++|+.++++|+.+++.++++++|.|++ . ++||++||..+. ..+.
T Consensus 82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~----------- 150 (520)
T PRK06484 82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPK----------- 150 (520)
T ss_pred EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCC-----------
Confidence 11 12235789999999999999999999999954 2 499999998874 3222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|+++|+|+.+|+++++.|+.+. ||+||+|+||+|+|++....
T Consensus 151 --------------------------~~~Y~asKaal~~l~~~la~e~~~~----~i~v~~i~Pg~v~t~~~~~~~~~~~ 200 (520)
T PRK06484 151 --------------------------RTAYSASKAAVISLTRSLACEWAAK----GIRVNAVLPGYVRTQMVAELERAGK 200 (520)
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEccCCcCchhhhhhcccch
Confidence 1789999999999999999999887 99999999999999985321
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+++++.+.||+++...+++|+.+ .+++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~~~~~~~G~~~--~~~gg~~ 248 (520)
T PRK06484 201 LDPSAVRSRIPLGRLGRPEEIAEAVFFLASDQASYITGSTL--VVDGGWT 248 (520)
T ss_pred hhhHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCceE--EecCCee
Confidence 0148999999999999999999999988 5566553
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=196.69 Aligned_cols=184 Identities=20% Similarity=0.212 Sum_probs=146.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc------------------hhHHHHHHHHHhc---------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK------------------KKGAEAVQVLKDR--------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~------------------~~~~~~~~~l~~~--------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+. +..++..+++.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEA-GAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVN 82 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6689999999999999999999999999 89999988765 1122333333221
Q ss_pred --C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 --A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 --~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+ ......++++..+++|+.+++.+++++.+.|++ .++||++||..+.....
T Consensus 83 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~------------------- 143 (252)
T PRK08220 83 AAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRI------------------- 143 (252)
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCC-------------------
Confidence 0 111245789999999999999999999999864 47999999987632111
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------- 371 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------- 371 (484)
+...|++||++++++++++++|++++ ||+||+|+||++.|++....
T Consensus 144 -----------------~~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~ 202 (252)
T PRK08220 144 -----------------GMAAYGASKAALTSLAKCVGLELAPY----GVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAG 202 (252)
T ss_pred -----------------CCchhHHHHHHHHHHHHHHHHHhhHh----CeEEEEEecCcCcchhhhhhccchhhhhhhhhh
Confidence 12789999999999999999999887 99999999999999874321
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++...+++|+++ .+|++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i--~~~gg~~ 249 (252)
T PRK08220 203 FPEQFKLGIPLGKIARPQEIANAVLFLASDLASHITLQDI--VVDGGAT 249 (252)
T ss_pred HHHHHhhcCCCcccCCHHHHHHHHHHHhcchhcCccCcEE--EECCCee
Confidence 1267999999999999999999999998 6677653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=207.29 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=132.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
.||+++||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARK-GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 5899999999999999999999999 899999999988777665544210
Q ss_pred ----------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccc-cchHHHHHH
Q psy8786 235 ----------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQ-ITNLELKKR 293 (484)
Q Consensus 235 ----------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~-~~~~~~~~~ 293 (484)
+. .+...++++.++++|+.|++.++++++|.|.+ .|+||++||.++...+ ..
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p------- 203 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDP------- 203 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCc-------
Confidence 00 01234778899999999999999999999854 4899999998874211 11
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
....|++||+|+++|+++|+.|++++ ||+|++|+||+|+|+|.....
T Consensus 204 ----------------------------~~~~Y~aSKaal~~~~~~L~~El~~~----gI~V~~v~PG~v~T~~~~~~~~ 251 (320)
T PLN02780 204 ----------------------------LYAVYAATKAYIDQFSRCLYVEYKKS----GIDVQCQVPLYVATKMASIRRS 251 (320)
T ss_pred ----------------------------cchHHHHHHHHHHHHHHHHHHHHhcc----CeEEEEEeeCceecCcccccCC
Confidence 02789999999999999999999877 999999999999999976221
Q ss_pred ---CCCHHhHHHHHHHHH
Q psy8786 373 ---NVNIFDDSSTFNAFE 387 (484)
Q Consensus 373 ---~~~peevA~~~~~L~ 387 (484)
..+||++|+.++...
T Consensus 252 ~~~~~~p~~~A~~~~~~~ 269 (320)
T PLN02780 252 SFLVPSSDGYARAALRWV 269 (320)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 258999999887665
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=199.01 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=130.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+++||||++|||+++|++|+ + |++|++++|+++++++..+++++.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999 5 899999999988887776665421
Q ss_pred -------CCC------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 235 -------AST------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------~~~------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
+.. ....+.++.++++|+.+++.+++.++|.|.+ +|+||++||.++......
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~------------ 146 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRA------------ 146 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcC------------
Confidence 110 1123456678899999999999999999854 489999999987422111
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC----C
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN----V 374 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~----~ 374 (484)
...|++||+|+++|+++++.|+.++ ||+||+|+||+|+|++.....+ .
T Consensus 147 ------------------------~~~Y~asKaa~~~~~~~la~el~~~----~I~v~~v~PG~v~T~~~~~~~~~~~~~ 198 (246)
T PRK05599 147 ------------------------NYVYGSTKAGLDAFCQGLADSLHGS----HVRLIIARPGFVIGSMTTGMKPAPMSV 198 (246)
T ss_pred ------------------------CcchhhHHHHHHHHHHHHHHHhcCC----CceEEEecCCcccchhhcCCCCCCCCC
Confidence 2689999999999999999999876 9999999999999998654322 5
Q ss_pred CHHhHHHHHHHHHhhh
Q psy8786 375 NIFDDSSTFNAFERVI 390 (484)
Q Consensus 375 ~peevA~~~~~L~s~~ 390 (484)
+|||+|+.++++++..
T Consensus 199 ~pe~~a~~~~~~~~~~ 214 (246)
T PRK05599 199 YPRDVAAAVVSAITSS 214 (246)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 8999999999988653
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=198.46 Aligned_cols=183 Identities=18% Similarity=0.217 Sum_probs=146.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.|+||+++||||++|||+++|++|+++ |++|++++|+.+..++..+++...
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAE-GATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDI 82 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 368999999999999999999999998 899999999876554433322100
Q ss_pred -----CCC--------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHHhhcc
Q psy8786 235 -----AST--------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -----~~~--------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~ 298 (484)
+.. ....+.++..+++|+.+++.+++.++|.|++ .++||++||..+ .+.+..
T Consensus 83 vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~~------------ 150 (255)
T PRK06057 83 AFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATS------------ 150 (255)
T ss_pred EEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCCC------------
Confidence 110 1234678999999999999999999998864 489999999776 322111
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
...|++||+|+.++++.++.++.++ ||+|++|+||+++|++....
T Consensus 151 ------------------------~~~Y~~sKaal~~~~~~l~~~~~~~----gi~v~~i~pg~v~t~~~~~~~~~~~~~ 202 (255)
T PRK06057 151 ------------------------QISYTASKGGVLAMSRELGVQFARQ----GIRVNALCPGPVNTPLLQELFAKDPER 202 (255)
T ss_pred ------------------------CcchHHHHHHHHHHHHHHHHHHHhh----CcEEEEEeeCCcCCchhhhhccCCHHH
Confidence 2679999999999999999999887 99999999999999975421
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+.||+++.+.+++|+.+ .+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~--~~~~g~~ 248 (255)
T PRK06057 203 AARRLVHVPMGRFAEPEEIAAAVAFLASDDASFITASTF--LVDGGIS 248 (255)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEE--EECCCee
Confidence 1267999999999999999999999988 6666653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-23 Score=205.70 Aligned_cols=162 Identities=30% Similarity=0.319 Sum_probs=120.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||+++||||++|||+++|++|+++ |++|++++|+.++.+++.+++...
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999 889999999977766554444310
Q ss_pred --------------C----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHH
Q psy8786 235 --------------A----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKR 293 (484)
Q Consensus 235 --------------~----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~ 293 (484)
+ ......++++..+++|+.|++.+++.+++.|++ .++||++||.++.. ......+.
T Consensus 90 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~--- 166 (306)
T PRK06197 90 RAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDL--- 166 (306)
T ss_pred HhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCcccc---
Confidence 0 001123577889999999999999999999875 37999999987532 11100000
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEE--eCCcccCCCccCC
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAV--HPGYVATNMSSFM 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV--~PG~V~T~m~~~~ 371 (484)
.. ...+ .+...|++||+|++++++.++++++.. ||+|+++ +||+|+|++.+..
T Consensus 167 ---------------~~----~~~~--~~~~~Y~~SK~a~~~~~~~la~~l~~~----~i~v~~v~~~PG~v~T~~~~~~ 221 (306)
T PRK06197 167 ---------------QW----ERRY--NRVAAYGQSKLANLLFTYELQRRLAAA----GATTIAVAAHPGVSNTELARNL 221 (306)
T ss_pred ---------------Cc----ccCC--CcHHHHHHHHHHHHHHHHHHHHHhhcC----CCCeEEEEeCCCcccCcccccC
Confidence 00 0000 123789999999999999999999876 7777665 6999999997754
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=208.31 Aligned_cols=161 Identities=33% Similarity=0.448 Sum_probs=127.6
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
...++.||+++||||++|||+++|++||++ |++|++.+|+.++++++++++...
T Consensus 29 ~~~~~~~~~~vVTGansGIG~eta~~La~~-Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~ 107 (314)
T KOG1208|consen 29 HGIDLSGKVALVTGATSGIGFETARELALR-GAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEE 107 (314)
T ss_pred ccccCCCcEEEEECCCCchHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHH
Confidence 356789999999999999999999999999 799999999999999998888763
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
.....+.|++|.+|++|++|+|.+++.++|.|++. +|||++||..+ .......++...
T Consensus 108 ~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~ 186 (314)
T KOG1208|consen 108 FKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGE 186 (314)
T ss_pred HHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccch
Confidence 11233457899999999999999999999999875 79999999987 111111111000
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC-Ccc
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN-MSS 369 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~-m~~ 369 (484)
. ....+...+|+.||.|+..+++.|++++.. ||.+++++||.|.|+ +.+
T Consensus 187 ---------------------~-~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~-----~V~~~~~hPG~v~t~~l~r 236 (314)
T KOG1208|consen 187 ---------------------K-AKLYSSDAAYALSKLANVLLANELAKRLKK-----GVTTYSVHPGVVKTTGLSR 236 (314)
T ss_pred ---------------------h-ccCccchhHHHHhHHHHHHHHHHHHHHhhc-----CceEEEECCCcccccceec
Confidence 0 000111246999999999999999998853 899999999999999 555
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=195.85 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=149.6
Q ss_pred CCCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------
Q psy8786 178 VNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 178 ~~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------- 234 (484)
||+++++++|+++||||++|||+++++.|+++ |++|++++|+.++.++..+.....
T Consensus 1 ~~~~~~~~~~~~lItGa~g~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 1 MNMAFDFSGKSVLVTGASSGIGRACAVALAQR-GARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CCcccccCCCEEEEeCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 45667889999999999999999999999998 889999999877655443322110
Q ss_pred ------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 ------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 ------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
+ ......++++..+++|+.+++.+++++.+.+++. ++||++||..+......
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------- 146 (245)
T PRK07060 80 GLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPD------------- 146 (245)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCC-------------
Confidence 0 0112347889999999999999999999988543 79999999876322111
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
...|++||++++.+++.++.++.+. ||++++|+||.+.|++....
T Consensus 147 -----------------------~~~y~~sK~a~~~~~~~~a~~~~~~----~i~v~~v~pg~v~~~~~~~~~~~~~~~~ 199 (245)
T PRK07060 147 -----------------------HLAYCASKAALDAITRVLCVELGPH----GIRVNSVNPTVTLTPMAAEAWSDPQKSG 199 (245)
T ss_pred -----------------------CcHhHHHHHHHHHHHHHHHHHHhhh----CeEEEEEeeCCCCCchhhhhccCHHHHH
Confidence 2689999999999999999998876 89999999999999975311
Q ss_pred ---------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ---------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++|+++.+.+++++...+++|+.+ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~--~~~~g~ 242 (245)
T PRK07060 200 PMLAAIPLGRFAEVDDVAAPILFLLSDAASMVSGVSL--PVDGGY 242 (245)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCcEE--eECCCc
Confidence 1268999999999999998899999998 566665
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=194.97 Aligned_cols=180 Identities=22% Similarity=0.171 Sum_probs=142.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHHh---------------------------c
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLKD---------------------------R 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~~---------------------------~ 234 (484)
++++|+++||||++|||+++|+.|+++ |++|++++|+.+ ..++..+++.. .
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAAD-GFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999 888888776532 22222222211 0
Q ss_pred -----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 -----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
+. .....++++.++++|+.+++.+++++++.|++.++||++||.++. ..+.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----------- 149 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPG----------- 149 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCC-----------
Confidence 10 112347889999999999999999999999878999999987763 2222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|+++|++++.+++.++.++... ||++|+|+||+++|++....
T Consensus 150 --------------------------~~~Y~~sK~a~~~~~~~~a~~~~~~----~i~v~~i~pg~~~t~~~~~~~~~~~ 199 (245)
T PRK12937 150 --------------------------YGPYAASKAAVEGLVHVLANELRGR----GITVNAVAPGPVATELFFNGKSAEQ 199 (245)
T ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCCccCchhcccCCHHH
Confidence 2689999999999999999998877 99999999999999984221
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
...+++|+++.+.|++++.+.+++|+.+ .++++
T Consensus 200 ~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~--~~~~g 243 (245)
T PRK12937 200 IDQLAGLAPLERLGTPEEIAAAVAFLAGPDGAWVNGQVL--RVNGG 243 (245)
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccccEE--EeCCC
Confidence 1258999999999999998899999988 44544
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=198.01 Aligned_cols=183 Identities=21% Similarity=0.235 Sum_probs=147.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|+.|+++ |++|++++|+.++.++..+++...
T Consensus 6 ~~~~~~~vlItGasggIG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 6 FRLDDQVAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999987666555444210
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
. ......++++.++++|+.+++.+++++.+.|.+ .++||++||..+. +.+.
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 156 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRG-------- 156 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCC--------
Confidence 0 112234788999999999999999999998854 4899999998873 2222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+++++++++++.|+.+ +|+||+|+||++.|++....
T Consensus 157 -----------------------------~~~Y~~sK~a~~~~~~~~~~e~~~-----~i~v~~i~Pg~v~t~~~~~~~~ 202 (263)
T PRK07814 157 -----------------------------FAAYGTAKAALAHYTRLAALDLCP-----RIRVNAIAPGSILTSALEVVAA 202 (263)
T ss_pred -----------------------------CchhHHHHHHHHHHHHHHHHHHCC-----CceEEEEEeCCCcCchhhhccC
Confidence 278999999999999999998853 59999999999999874421
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++|++++.+.+++|+.+ .++++...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~~~~~~~ 253 (263)
T PRK07814 203 NDELRAPMEKATPLRRLGDPEDIAAAAVYLASPAGSYLTGKTL--EVDGGLTF 253 (263)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCCEE--EECCCccC
Confidence 1158999999999999998899999988 55665533
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=194.02 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=138.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc---------------------------------
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR--------------------------------- 234 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~--------------------------------- 234 (484)
++||||++|||+++|+.|+++ |++|++++|. .+..++..++++..
T Consensus 1 vlItGas~giG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAAD-GFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 589999999999999999999 8899888765 33444433333211
Q ss_pred -----C------CCCccHHHHHHHHHhhhHHHHHHHHHHH-Hhhh--cCCEEEEEeCCCcc-ccccchHHHHHHHhhccc
Q psy8786 235 -----A------STVPFAIQAEKTILTNYLGLVRTCVFLF-PLLR--RHARVVNLSSSAGH-LSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -----~------~~~~~~~~~~~~~~vN~~g~~~l~~all-p~l~--~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~ 299 (484)
+ ......++++.++++|+.+++.++++++ |.++ +.++||++||.++. +.+.
T Consensus 80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~-------------- 145 (239)
T TIGR01831 80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRG-------------- 145 (239)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCC--------------
Confidence 0 0122457899999999999999999875 5543 35899999998873 3222
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------- 372 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------- 372 (484)
...|+++|+++.+++++++.|+.++ ||+||+|+||+++|++.....
T Consensus 146 -----------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 198 (239)
T TIGR01831 146 -----------------------QVNYSAAKAGLIGATKALAVELAKR----KITVNCIAPGLIDTEMLAEVEHDLDEAL 198 (239)
T ss_pred -----------------------CcchHHHHHHHHHHHHHHHHHHhHh----CeEEEEEEEccCccccchhhhHHHHHHH
Confidence 2689999999999999999999887 999999999999999865321
Q ss_pred -------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+++.++||+++.+.+++|+.+ .++|++
T Consensus 199 ~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~~gg~ 238 (239)
T TIGR01831 199 KTVPMNRMGQPAEVASLAGFLMSDGASYVTRQVI--SVNGGM 238 (239)
T ss_pred hcCCCCCCCCHHHHHHHHHHHcCchhcCccCCEE--EecCCc
Confidence 258999999999999999999999988 566653
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=201.28 Aligned_cols=175 Identities=23% Similarity=0.265 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
.+|+++||||++|||+++|++|+++ | ++|++++|+.++++++.+++...
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~-G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAAT-GEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 3689999999999999999999998 7 89999999987766655544210
Q ss_pred ---------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC----CEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ---------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH----ARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ---------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~----grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. ...+.++++.++++|+.|++.++++++|.|++. ++||++||.++........ +
T Consensus 81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~-~---- 155 (314)
T TIGR01289 81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGN-V---- 155 (314)
T ss_pred CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCc-C----
Confidence 11 112457899999999999999999999999653 7999999998742210000 0
Q ss_pred hhccccccccccc--cccC--CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cCCCcc
Q psy8786 295 RQLREPVSLRSLN--ITKE--HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-ATNMSS 369 (484)
Q Consensus 295 ~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T~m~~ 369 (484)
........+.... .... ......+.+ ..+|++||+|+..+++.+++++... .||+|++|+||.| +|+|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~SK~a~~~~~~~la~~~~~~---~gi~v~~v~PG~v~~T~l~~ 230 (314)
T TIGR01289 156 PPKANLGDLSGLAAGFKAPIAMIDGKEFKG--AKAYKDSKVCNMLTVRELHRRFHDE---TGITFASLYPGCIADTGLFR 230 (314)
T ss_pred CCcccccccccccccCCCcccccCCCCcch--hhhHHHhHHHHHHHHHHHHHHhccC---CCeEEEEecCCcccCCcccc
Confidence 0000000000000 0000 000001122 3789999999999999999988421 3899999999999 699976
Q ss_pred C
Q psy8786 370 F 370 (484)
Q Consensus 370 ~ 370 (484)
.
T Consensus 231 ~ 231 (314)
T TIGR01289 231 E 231 (314)
T ss_pred c
Confidence 4
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=195.04 Aligned_cols=182 Identities=20% Similarity=0.208 Sum_probs=140.9
Q ss_pred CCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecC-----------chhHHHHHHHH------------------
Q psy8786 183 DPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARD-----------KKKGAEAVQVL------------------ 231 (484)
Q Consensus 183 ~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~-----------~~~~~~~~~~l------------------ 231 (484)
++++|++|||||++ |||.++|++|+++ |++|++++|+ .+......+++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAK-GIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHc-CCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 46889999999995 9999999999999 8899999887 11111111111
Q ss_pred ---------Hhc-----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcccc
Q psy8786 232 ---------KDR-----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS 283 (484)
Q Consensus 232 ---------~~~-----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~ 283 (484)
.+. + ......++++..+++|+.+++.+++++.+.|++ .++||++||..+...
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~ 160 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP 160 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC
Confidence 110 0 011234678999999999999999999998864 379999999876322
Q ss_pred ccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 284 QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
... ...|++||+|+++++++++.++... ||+||+|+||++
T Consensus 161 ~~~------------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~i~Pg~~ 200 (256)
T PRK12748 161 MPD------------------------------------ELAYAATKGAIEAFTKSLAPELAEK----GITVNAVNPGPT 200 (256)
T ss_pred CCC------------------------------------chHHHHHHHHHHHHHHHHHHHHHHh----CeEEEEEEeCcc
Confidence 111 2689999999999999999999877 999999999999
Q ss_pred cCCCccCC------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 364 ATNMSSFM------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 364 ~T~m~~~~------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
+|++.... ...+|+|+|+.+.|++++.+.+++|+.+ .+|+++
T Consensus 201 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~--~~d~g~ 254 (256)
T PRK12748 201 DTGWITEELKHHLVPKFPQGRVGEPVDAARLIAFLVSEEAKWITGQVI--HSEGGF 254 (256)
T ss_pred cCCCCChhHHHhhhccCCCCCCcCHHHHHHHHHHHhCcccccccCCEE--EecCCc
Confidence 99864321 1268999999999999999999999988 556654
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=192.79 Aligned_cols=180 Identities=22% Similarity=0.201 Sum_probs=142.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEE-EecCchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYL-TARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl-~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
|.+|+++||||++|||+++|++|+++ |++|++ .+|+.++.++..+++...
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEE-GYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999998 888765 577766655544443221
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
.......+.++.++++|+.+++.+++++++.|++ .++||++||..+. ..+.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~---------- 150 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLEN---------- 150 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCC----------
Confidence 0011234677889999999999999999999865 4799999997653 2121
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+++++++++++.++.++ ||++|+|+||++.|++....
T Consensus 151 ---------------------------~~~y~~sK~a~~~~~~~~~~~~~~~----~i~v~~i~pg~v~t~~~~~~~~~~ 199 (250)
T PRK08063 151 ---------------------------YTTVGVSKAALEALTRYLAVELAPK----GIAVNAVSGGAVDTDALKHFPNRE 199 (250)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHHHHHHhHh----CeEEEeEecCcccCchhhhccCch
Confidence 2689999999999999999999877 99999999999999874321
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++|+|+.+.+++++...+++|+.+ .++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~--~~~gg~ 246 (250)
T PRK08063 200 ELLEDARAKTPAGRMVEPEDVANAVLFLCSPEADMIRGQTI--IVDGGR 246 (250)
T ss_pred HHHHHHhcCCCCCCCcCHHHHHHHHHHHcCchhcCccCCEE--EECCCe
Confidence 1267899999999999888889999988 566654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=193.36 Aligned_cols=181 Identities=18% Similarity=0.241 Sum_probs=145.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
|++|++|||||++|||++++++|+++ |++|++++|+.+..++..+++...
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEE-GAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999998 899999999877655544433210
Q ss_pred --------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 --------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
. ......++++..+++|+.+++.+++++.+.|++ .++||+++|..+......
T Consensus 80 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~----------- 148 (250)
T TIGR03206 80 PVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSG----------- 148 (250)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCC-----------
Confidence 0 011234678889999999999999999999865 379999999877432211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|+.+|+|++++++++++++.+. ||++++|+||+++|++....
T Consensus 149 -------------------------~~~Y~~sK~a~~~~~~~la~~~~~~----~i~v~~v~pg~~~~~~~~~~~~~~~~ 199 (250)
T TIGR03206 149 -------------------------EAVYAACKGGLVAFSKTMAREHARH----GITVNVVCPGPTDTALLDDICGGAEN 199 (250)
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHHHHhHh----CcEEEEEecCcccchhHHhhhhccCC
Confidence 1689999999999999999999877 89999999999999964321
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++|+|+.+.+++++...+++|+++ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~~g~ 248 (250)
T TIGR03206 200 PEKLREAFTRAIPLGRLGQPDDLPGAILFFSSDDASFITGQVL--SVSGGL 248 (250)
T ss_pred hHHHHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCCcCcEE--EeCCCc
Confidence 1158999999999999999999999988 556654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=192.06 Aligned_cols=182 Identities=19% Similarity=0.181 Sum_probs=147.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--c--------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--R-------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--~-------------------------- 234 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.++.++....+.. .
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999998 89999999998766655444330 0
Q ss_pred ---------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ---------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+ ......++++..+++|+.+++.+++.+.+.+++ .++||++||..+......
T Consensus 81 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 150 (251)
T PRK07231 81 SVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPG---------- 150 (251)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCC----------
Confidence 0 012234788999999999999999999999864 379999999877422111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|+.||++++.+++.++.++++. ||+||+|+||++.|++.....
T Consensus 151 --------------------------~~~y~~sk~~~~~~~~~~a~~~~~~----~i~v~~i~pg~~~t~~~~~~~~~~~ 200 (251)
T PRK07231 151 --------------------------LGWYNASKGAVITLTKALAAELGPD----KIRVNAVAPVVVETGLLEAFMGEPT 200 (251)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEECccCCCcchhhhcccC
Confidence 2689999999999999999998876 999999999999999754321
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.+.+++++...+++|+.+ .+||+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~gg~ 248 (251)
T PRK07231 201 PENRAKFLATIPLGRLGTPEDIANAALFLASDEASWITGVTL--VVDGGR 248 (251)
T ss_pred hHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCCCCCeE--EECCCc
Confidence 157899999999999988889999987 556654
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=194.16 Aligned_cols=178 Identities=19% Similarity=0.209 Sum_probs=141.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----c--------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----R-------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----~-------------------------- 234 (484)
+|++|||||++|||+++|++|+++ |++|++++|+.+..++..+++.. .
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999999998 89999999987665554443321 0
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.|++.+++++.+.|++ .++||++||..+. +.+.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~---------- 150 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKH---------- 150 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCC----------
Confidence 0 112234788999999999999999999998854 3699999998763 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cCCCccCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-ATNMSSFM--- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T~m~~~~--- 371 (484)
...|++||+|+++++++++.|++++ ||+||+|+||.+ .|++....
T Consensus 151 ---------------------------~~~Y~~sKaa~~~l~~~la~e~~~~----gi~v~~v~pg~~~~~~~~~~~~~~ 199 (259)
T PRK12384 151 ---------------------------NSGYSAAKFGGVGLTQSLALDLAEY----GITVHSLMLGNLLKSPMFQSLLPQ 199 (259)
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEecCCcccchhhhhhhHH
Confidence 1689999999999999999999887 999999999975 66654211
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++|+++.++||+++.+.+++|+.+ .++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~--~v~~g~ 256 (259)
T PRK12384 200 YAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSI--NVTGGQ 256 (259)
T ss_pred HHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccccccCceE--EEcCCE
Confidence 1158999999999999988899999988 566654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-22 Score=194.54 Aligned_cols=187 Identities=24% Similarity=0.209 Sum_probs=147.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++++|++|||||++|||.++|+.|+++ |++|++++|+.++.+...+++...
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEA-GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998 899999999877655544433210
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHh-hhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPL-LRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~-l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ......+.++.++++|+.+++.+++++.+. +.+ .+++|++||..+.......
T Consensus 87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~------- 159 (259)
T PRK08213 87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE------- 159 (259)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc-------
Confidence 0 011234788999999999999999999987 544 3799999998763221100
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
..+...|+++|++++++++++++++.++ ||++|+|+||+++|++.....
T Consensus 160 -------------------------~~~~~~Y~~sKa~~~~~~~~~a~~~~~~----gi~v~~v~Pg~~~t~~~~~~~~~ 210 (259)
T PRK08213 160 -------------------------VMDTIAYNTSKGAVINFTRALAAEWGPH----GIRVNAIAPGFFPTKMTRGTLER 210 (259)
T ss_pred -------------------------ccCcchHHHHHHHHHHHHHHHHHHhccc----CEEEEEEecCcCCCcchhhhhHH
Confidence 0012689999999999999999999876 999999999999998754321
Q ss_pred -------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++|+++.+.|++++.+.+++|+.+ .++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~--~~~~~~ 256 (259)
T PRK08213 211 LGEDLLAHTPLGRLGDDEDLKGAALLLASDASKHITGQIL--AVDGGV 256 (259)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE--EECCCe
Confidence 157999999999999999999999998 566654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=195.87 Aligned_cols=191 Identities=19% Similarity=0.193 Sum_probs=145.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+++|+++||||++|||+++|+.|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999998 899999999877765554444210
Q ss_pred ---------CC-----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHH
Q psy8786 235 ---------AS-----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 ---------~~-----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
.. .....+.++..+++|+.+++.+++++++.|++ .++||++||..+...+... ..
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-~~-- 157 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFE-IY-- 157 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccch-hc--
Confidence 00 01223678899999999999999999999964 3799999998774322110 00
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-- 370 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-- 370 (484)
... .......|++||+++++++++++.|+.++ ||+||+|+||.+.|+....
T Consensus 158 --------------------~~~---~~~~~~~Y~~sK~a~~~l~~~la~e~~~~----~i~v~~i~Pg~~~~~~~~~~~ 210 (256)
T PRK09186 158 --------------------EGT---SMTSPVEYAAIKAGIIHLTKYLAKYFKDS----NIRVNCVSPGGILDNQPEAFL 210 (256)
T ss_pred --------------------ccc---ccCCcchhHHHHHHHHHHHHHHHHHhCcC----CeEEEEEecccccCCCCHHHH
Confidence 000 00011479999999999999999998876 9999999999998764211
Q ss_pred ---------CCCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 ---------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 ---------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
....+|+|+|+.++|++++.+.+++|+.+ .+++++
T Consensus 211 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~~g~ 254 (256)
T PRK09186 211 NAYKKCCNGKGMLDPDDICGTLVFLLSDQSKYITGQNI--IVDDGF 254 (256)
T ss_pred HHHHhcCCccCCCCHHHhhhhHhheeccccccccCceE--EecCCc
Confidence 12389999999999999999999999988 566654
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=195.71 Aligned_cols=179 Identities=16% Similarity=0.095 Sum_probs=137.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc-------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~------------------------------- 234 (484)
++++||||++|||+++|++|+++ |++|++++|+ ++++++..+++...
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQE-GYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhC-CCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 68999999999999999999998 8999887653 44444433333210
Q ss_pred ------------CCC------Ccc-----------HHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeC
Q psy8786 235 ------------AST------VPF-----------AIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSS 277 (484)
Q Consensus 235 ------------~~~------~~~-----------~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS 277 (484)
+.. ... .++++.++++|+.+++.+++++.+.|++ .++|++++|
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 100 001 1257889999999999999999998853 257999988
Q ss_pred CCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEE
Q psy8786 278 SAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 356 (484)
Q Consensus 278 ~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVN 356 (484)
..+. ..+. ..+|++||+|+++|+++|+.|++++ ||+||
T Consensus 161 ~~~~~~~~~-------------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~ 199 (267)
T TIGR02685 161 AMTDQPLLG-------------------------------------FTMYTMAKHALEGLTRSAALELAPL----QIRVN 199 (267)
T ss_pred hhccCCCcc-------------------------------------cchhHHHHHHHHHHHHHHHHHHhhh----CeEEE
Confidence 7763 2221 2789999999999999999999887 99999
Q ss_pred EEeCCcccCCCc--cC----------C--CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 357 AVHPGYVATNMS--SF----------M--GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 357 aV~PG~V~T~m~--~~----------~--~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+|+||++.|+.. .. . ...+|+|+++.++|++++.+.+++|+.+ .+++++..
T Consensus 200 ~v~PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~--~v~gg~~~ 264 (267)
T TIGR02685 200 GVAPGLSLLPDAMPFEVQEDYRRKVPLGQREASAEQIADVVIFLVSPKAKYITGTCI--KVDGGLSL 264 (267)
T ss_pred EEecCCccCccccchhHHHHHHHhCCCCcCCCCHHHHHHHHHHHhCcccCCcccceE--EECCceec
Confidence 999999876522 11 0 1368999999999999999999999998 66777643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=191.13 Aligned_cols=181 Identities=20% Similarity=0.227 Sum_probs=143.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc----
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR---- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~---- 234 (484)
++++|+++||||++|||++++++|+++ |+.|++.+|+.+++++..+.+. +.
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQ-GAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 568899999999999999999999998 8888888888665544332211 00
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHHhhcc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~ 298 (484)
+ ......++++..+++|+.+++.+++++.+.+++ .++||++||..+ .+.+..
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------ 149 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQ------------ 149 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCC------------
Confidence 0 012244788999999999999999999987743 489999999876 332221
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------ 372 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------ 372 (484)
..|+++|+|+.++++.++.++... ||++|+|+||+++|++.....
T Consensus 150 -------------------------~~Y~~sk~a~~~~~~~la~~~~~~----~i~v~~i~pg~~~t~~~~~~~~~~~~~ 200 (245)
T PRK12936 150 -------------------------ANYCASKAGMIGFSKSLAQEIATR----NVTVNCVAPGFIESAMTGKLNDKQKEA 200 (245)
T ss_pred -------------------------cchHHHHHHHHHHHHHHHHHhhHh----CeEEEEEEECcCcCchhcccChHHHHH
Confidence 689999999999999999998876 999999999999998764321
Q ss_pred ---------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ---------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ---------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+++.+.|++++...+++|+.+ .++++.
T Consensus 201 ~~~~~~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~--~~~~g~ 242 (245)
T PRK12936 201 IMGAIPMKRMGTGAEVASAVAYLASSEAAYVTGQTI--HVNGGM 242 (245)
T ss_pred HhcCCCCCCCcCHHHHHHHHHHHcCccccCcCCCEE--EECCCc
Confidence 257899999999999888889999988 455554
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=195.98 Aligned_cols=146 Identities=23% Similarity=0.243 Sum_probs=121.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARR-GARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999 899999999987776665554321
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
.......++++..+++|+.|++.++++++|.|.+ +|+||++||.++.....
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~---------- 151 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNA---------- 151 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCC----------
Confidence 0112235789999999999999999999999854 47999999988742211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
+...|++||+|+.+|+++|+.|++++ ||+|++|+||+++|++..
T Consensus 152 --------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~ 195 (275)
T PRK05876 152 --------------------------GLGAYGVAKYGVVGLAETLAREVTAD----GIGVSVLCPMVVETNLVA 195 (275)
T ss_pred --------------------------CCchHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEEeCcccccccc
Confidence 12789999999999999999999876 999999999999999864
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-22 Score=201.42 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=137.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++++|+++||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~-G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARR-GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999988777666555321
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.|++.+++++++.|++ .++||++||..+......
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~--------- 153 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPL--------- 153 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCc---------
Confidence 0 112234788999999999999999999999976 489999999988432111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+++.+|+++++.|+..+ ..+|+||+|+||.|+|++....
T Consensus 154 ---------------------------~~~Y~asK~a~~~~~~~l~~el~~~--~~~I~v~~v~Pg~v~T~~~~~~~~~~ 204 (334)
T PRK07109 154 ---------------------------QSAYCAAKHAIRGFTDSLRCELLHD--GSPVSVTMVQPPAVNTPQFDWARSRL 204 (334)
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEEeCCCccCchhhhhhhhc
Confidence 2689999999999999999999753 1369999999999999975421
Q ss_pred --------CCCCHHhHHHHHHHHHhhh
Q psy8786 372 --------GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 372 --------~~~~peevA~~~~~L~s~~ 390 (484)
...+|+|+|+.++++++..
T Consensus 205 ~~~~~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 205 PVEPQPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHhCC
Confidence 1268999999999998754
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=193.81 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=134.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH-----------------------hc-----
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-----------------------DR----- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~-----------------------~~----- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+++++++..+++. +.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAAL-GARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPID 80 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467899999999999999999999998 8999999999877665443332 00
Q ss_pred ------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 ------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 ------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
.......+.++.++++|+.|++.+++.++|.|++. ++||++||.++......
T Consensus 81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------- 146 (273)
T PRK07825 81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPG-------------- 146 (273)
T ss_pred EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCC--------------
Confidence 01122346789999999999999999999998653 79999999987422111
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------CCC
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------GNV 374 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------~~~ 374 (484)
...|++||+++.+++++++.|+.+. ||+|++|+||++.|++.... ...
T Consensus 147 ----------------------~~~Y~asKaa~~~~~~~l~~el~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 200 (273)
T PRK07825 147 ----------------------MATYCASKHAVVGFTDAARLELRGT----GVHVSVVLPSFVNTELIAGTGGAKGFKNV 200 (273)
T ss_pred ----------------------CcchHHHHHHHHHHHHHHHHHhhcc----CcEEEEEeCCcCcchhhcccccccCCCCC
Confidence 2789999999999999999999876 99999999999999986543 237
Q ss_pred CHHhHHHHHHHHHhh
Q psy8786 375 NIFDDSSTFNAFERV 389 (484)
Q Consensus 375 ~peevA~~~~~L~s~ 389 (484)
+|+|+|+.++.++..
T Consensus 201 ~~~~va~~~~~~l~~ 215 (273)
T PRK07825 201 EPEDVAAAIVGTVAK 215 (273)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999998887754
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=192.11 Aligned_cols=177 Identities=22% Similarity=0.260 Sum_probs=144.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+++||||++|||++++++|+++ |++|++++|+.+.+++..+++...
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD-GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999998 899999999876555444433211
Q ss_pred ------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 ------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 ------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
+ ......++++.++++|+.+++.+++++++.|++ .++||++||..+. +.+.
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------- 146 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPI------------- 146 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCC-------------
Confidence 0 112345788999999999999999999998865 3699999998773 3222
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
...|++||++++++++.++.++.+. ||+|++|+||+++|++....
T Consensus 147 ------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~Pg~i~t~~~~~~~~~~~~~ 198 (254)
T TIGR02415 147 ------------------------LSAYSSTKFAVRGLTQTAAQELAPK----GITVNAYCPGIVKTPMWEEIDEETSEI 198 (254)
T ss_pred ------------------------CcchHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCcccChhhhhhhhhhhhc
Confidence 2789999999999999999998876 99999999999999985421
Q ss_pred -------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+++++.||+++.+.+++|+.+ .+|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~--~~d~g~ 251 (254)
T TIGR02415 199 AGKPIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASEDSDYITGQSI--LVDGGM 251 (254)
T ss_pred ccCchHHHHHHHHhhCCCCCCCCHHHHHHHHHhhcccccCCccCcEE--EecCCc
Confidence 1268999999999999999999999998 666664
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=189.80 Aligned_cols=183 Identities=19% Similarity=0.230 Sum_probs=147.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+++||+++||||++|||+++|++|+++ |++|++++|+.+..++..+++...
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFARE-GARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHC-CCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999998 899999999877655544433100
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.+++.+++.+++.|++. ++|+++||..+. +.+.
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~---------- 149 (252)
T PRK06138 80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRG---------- 149 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCC----------
Confidence 0 1123457889999999999999999999998653 799999998763 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|+.+|++++.+++.++.++..+ ||+|++|+||.+.|++....
T Consensus 150 ---------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~pg~~~t~~~~~~~~~~ 198 (252)
T PRK06138 150 ---------------------------RAAYVASKGAIASLTRAMALDHATD----GIRVNAVAPGTIDTPYFRRIFARH 198 (252)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHHHHHHHhc----CeEEEEEEECCccCcchhhhhccc
Confidence 2689999999999999999999877 99999999999999875321
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+++|+++.++++++....+++|+.+ .+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~--~~~~g~~ 250 (252)
T PRK06138 199 ADPEALREALRARHPMNRFGTAEEVAQAALFLASDESSFATGTTL--VVDGGWL 250 (252)
T ss_pred cChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEE--EECCCee
Confidence 1257999999999999988899999987 5666653
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=190.13 Aligned_cols=175 Identities=21% Similarity=0.186 Sum_probs=142.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+++|+++||||++|||.+++++|+++ |++|++++|+.+++++..+++...
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARH-GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999998 889999999876654443333210
Q ss_pred ------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 ------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 ------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+ ......+.++..+++|+.|++.+++++.+.|++ .++||++||..+. ..+.
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~------- 161 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRAN------- 161 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCC-------
Confidence 0 012234788999999999999999999998865 4799999998763 2221
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||++++++++.+++++... ||++++|+||.+.|++....
T Consensus 162 ------------------------------~~~Y~~sK~a~~~~~~~~~~~~~~~----~i~~~~v~pg~v~t~~~~~~~ 207 (247)
T PRK08945 162 ------------------------------WGAYAVSKFATEGMMQVLADEYQGT----NLRVNCINPGGTRTAMRASAF 207 (247)
T ss_pred ------------------------------CcccHHHHHHHHHHHHHHHHHhccc----CEEEEEEecCCccCcchhhhc
Confidence 2689999999999999999988765 99999999999999974322
Q ss_pred ------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 ------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 ------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
...+|+|+++.+.|++++.+.+++|+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 242 (247)
T PRK08945 208 PGEDPQKLKTPEDIMPLYLYLMGDDSRRKNGQSFD 242 (247)
T ss_pred CcccccCCCCHHHHHHHHHHHhCccccccCCeEEe
Confidence 12789999999999999999999999763
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=192.30 Aligned_cols=184 Identities=20% Similarity=0.189 Sum_probs=145.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----c----------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----R---------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----~---------------------- 234 (484)
++|++|++|||||++|||+++|+.|+++ |++|++++|+.++.++..+++.. .
T Consensus 3 ~~~~~k~vlItGasg~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 3 LSFQDRTYLVTGGGSGIGKGVAAGLVAA-GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999998 89999999987655443333210 0
Q ss_pred -------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHH
Q psy8786 235 -------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 -------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
+ ......++++.++++|+.+++.+++++++.|.+ .++|+++||..+.....
T Consensus 82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 154 (276)
T PRK05875 82 AWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHR------- 154 (276)
T ss_pred HHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCC-------
Confidence 1 011234678899999999999999999998854 47999999987632211
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
+...|+++|++++++++.++.++... ||++|+|+||+++|++.....
T Consensus 155 -----------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~----~i~v~~i~Pg~v~t~~~~~~~ 201 (276)
T PRK05875 155 -----------------------------WFGAYGVTKSAVDHLMKLAADELGPS----WVRVNSIRPGLIRTDLVAPIT 201 (276)
T ss_pred -----------------------------CCcchHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCccCCccccccc
Confidence 12689999999999999999998876 999999999999999764311
Q ss_pred -----------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+++|+++.+.||++....+++|+.+ .+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~~g~~ 252 (276)
T PRK05875 202 ESPELSADYRACTPLPRVGEVEDVANLAMFLLSDAASWITGQVI--NVDGGHM 252 (276)
T ss_pred cCHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEE--EECCCee
Confidence 147899999999999988889999988 4555543
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=186.89 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=140.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------------HHHHHHHHHhc----------CC--
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------------GAEAVQVLKDR----------AS-- 236 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------------~~~~~~~l~~~----------~~-- 236 (484)
.+|+++||||++|||+++|++|+++ |++|++++|+.++ .+++++++.+. ..
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 80 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANL-GHQVIGIARSAIDDFPGELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIAL 80 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCcccccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCCC
Confidence 5789999999999999999999998 8999999886432 12233332221 00
Q ss_pred C----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 237 T----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 237 ~----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
. ....++++..+++|+.+++.+++++++.|++ .++||++||......+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------------------- 135 (234)
T PRK07577 81 PQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGALD------------------------- 135 (234)
T ss_pred CCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCCC-------------------------
Confidence 0 1135788999999999999999999999865 37999999986433222
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-----------------
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN----------------- 373 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~----------------- 373 (484)
...|++||+++++++++++.|+++. ||+||+|+||++.|++.....+
T Consensus 136 ------------~~~Y~~sK~a~~~~~~~~a~e~~~~----gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (234)
T PRK07577 136 ------------RTSYSAAKSALVGCTRTWALELAEY----GITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRR 199 (234)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHhh----CcEEEEEecCcccCcccccccccchhHHHHHhhcCCCCC
Confidence 1689999999999999999999877 9999999999999998643211
Q ss_pred -CCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 374 -VNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 374 -~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
.+|+|+|+.+.+++++...+++|+.+ .++++
T Consensus 200 ~~~~~~~a~~~~~l~~~~~~~~~g~~~--~~~g~ 231 (234)
T PRK07577 200 LGTPEEVAAAIAFLLSDDAGFITGQVL--GVDGG 231 (234)
T ss_pred CcCHHHHHHHHHHHhCcccCCccceEE--EecCC
Confidence 37999999999999888889999988 44554
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=189.84 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=144.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|++|||||++|||++++++|+++ |++|++++|++++.++..+++.+.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARA-GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999998 889999999987665555444321
Q ss_pred ----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhh-hc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLL-RR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l-~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. .....++++..+++|+.+++.+++++++.+ ++ .++||++||..+.....
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~---------- 152 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASP---------- 152 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCC----------
Confidence 00 012346788999999999999999999999 44 37999999976632111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
+...|+++|+++.++++.++.++.+. ||++|+|+||.+.|++....
T Consensus 153 --------------------------~~~~y~~sk~a~~~~~~~la~~~~~~----~i~v~~v~pg~v~~~~~~~~~~~~ 202 (262)
T PRK13394 153 --------------------------LKSAYVTAKHGLLGLARVLAKEGAKH----NVRSHVVCPGFVRTPLVDKQIPEQ 202 (262)
T ss_pred --------------------------CCcccHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCcccchhhhhhhHhh
Confidence 12689999999999999999998776 89999999999999864211
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++|+++.+.++++.....++|+.+ .+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~--~~~~g~ 259 (262)
T PRK13394 203 AKELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSF--VVSHGW 259 (262)
T ss_pred hhccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEE--eeCCce
Confidence 1258999999999999887788899987 556554
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=186.72 Aligned_cols=179 Identities=21% Similarity=0.214 Sum_probs=142.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||+++||||++|||+++|+.|+++ |++|++++|+.++.++..+++...
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQK-GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999998 889999999876655544433210
Q ss_pred ----------CC---------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccc
Q psy8786 235 ----------AS---------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQIT 286 (484)
Q Consensus 235 ----------~~---------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~ 286 (484)
+. .....+.++.++++|+.+++.+++.+.+.+.+ .++||++||....+.+.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~- 159 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNMG- 159 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCCC-
Confidence 00 12234788899999999999999999998853 36899998865432222
Q ss_pred hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...|++||+|+++++++++.++.++ ||++++|+||++.|+
T Consensus 160 ------------------------------------~~~Y~~sK~a~~~l~~~la~~~~~~----~i~v~~v~pg~v~t~ 199 (253)
T PRK08217 160 ------------------------------------QTNYSASKAGVAAMTVTWAKELARY----GIRVAAIAPGVIETE 199 (253)
T ss_pred ------------------------------------CchhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEeeCCCcCc
Confidence 2789999999999999999999876 999999999999999
Q ss_pred CccCCC---------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 367 MSSFMG---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 367 m~~~~~---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
+..... ..+++|+++.+.++++ ..+++|+.+ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~g~~~--~~~gg~ 251 (253)
T PRK08217 200 MTAAMKPEALERLEKMIPVGRLGEPEEIAHTVRFIIE--NDYVTGRVL--EIDGGL 251 (253)
T ss_pred cccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHHc--CCCcCCcEE--EeCCCc
Confidence 865421 1589999999999995 468899988 566655
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=182.55 Aligned_cols=177 Identities=26% Similarity=0.362 Sum_probs=135.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEE-EEecCchhHHHHHHHHH-hc----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIY-LTARDKKKGAEAVQVLK-DR---------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vv-l~~R~~~~~~~~~~~l~-~~---------------------------- 234 (484)
.-|.++||||++|||+.++++|.+..+-.++ .++|+.+++.+..+... .+
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 3467999999999999999999987555544 55777776432222211 11
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC-------------CEEEEEeCCCcccc
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH-------------ARVVNLSSSAGHLS 283 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~-------------grIV~iSS~ag~~~ 283 (484)
....+..+.|..++++|..|++.++|+++|++++. +.|||+||..+...
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~ 161 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG 161 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence 22345568899999999999999999999999763 37999999887421
Q ss_pred ccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 284 QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
... ..+..+|.+||+|+++|+|+++.+|.++ +|-|..+|||||
T Consensus 162 ~~~---------------------------------~~~~~AYrmSKaAlN~f~ksls~dL~~~----~ilv~sihPGwV 204 (249)
T KOG1611|consen 162 GFR---------------------------------PGGLSAYRMSKAALNMFAKSLSVDLKDD----HILVVSIHPGWV 204 (249)
T ss_pred CCC---------------------------------CcchhhhHhhHHHHHHHHHHhhhhhcCC----cEEEEEecCCeE
Confidence 111 1134899999999999999999999987 899999999999
Q ss_pred cCCCccCCCCCCHHhHHHHHHHHHhhhcccccccc
Q psy8786 364 ATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQ 398 (484)
Q Consensus 364 ~T~m~~~~~~~~peevA~~~~~L~s~~a~~itG~~ 398 (484)
.|+|.......++||.+..++.-.......-+|..
T Consensus 205 ~TDMgg~~a~ltveeSts~l~~~i~kL~~~hnG~f 239 (249)
T KOG1611|consen 205 QTDMGGKKAALTVEESTSKLLASINKLKNEHNGGF 239 (249)
T ss_pred EcCCCCCCcccchhhhHHHHHHHHHhcCcccCcce
Confidence 99999988889999999887766554444444443
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=187.97 Aligned_cols=176 Identities=21% Similarity=0.171 Sum_probs=136.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHHh---------------------------c----
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLKD---------------------------R---- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~~---------------------------~---- 234 (484)
|+++||||++|||.++|+.|+++ |++|++++ |+.+..++..+++.. .
T Consensus 3 k~ilItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAAR-GWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999998 88887764 554444333322211 0
Q ss_pred -------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ......++++..+++|+.+++.+++++++.+.. +++||+++|.++. +.+..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~-------- 153 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNE-------- 153 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCC--------
Confidence 1 012234778899999999999999999988753 3689999998773 22211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+++++++++++.++.++ ||+|++|+||+++|++....
T Consensus 154 ----------------------------~~~Y~~sK~~~~~~~~~la~~~~~~----~i~v~~i~Pg~v~t~~~~~~~~~ 201 (248)
T PRK06947 154 ----------------------------YVDYAGSKGAVDTLTLGLAKELGPH----GVRVNAVRPGLIETEIHASGGQP 201 (248)
T ss_pred ----------------------------CcccHhhHHHHHHHHHHHHHHhhhh----CcEEEEEeccCcccccccccCCH
Confidence 1579999999999999999999877 99999999999999985321
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccccccccc
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPA 405 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g 405 (484)
...+++++++.++|++++.+.+++|+.+ .++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~e~va~~~~~l~~~~~~~~~G~~~--~~~g 246 (248)
T PRK06947 202 GRAARLGAQTPLGRAGEADEVAETIVWLLSDAASYVTGALL--DVGG 246 (248)
T ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceE--eeCC
Confidence 1257999999999999999999999988 4454
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=189.44 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=129.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HHHHHHHHHhc-----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~~~~~~l~~~----------------------------- 234 (484)
++|+++||||++|||+++|++|+++||++|++++|+++. +++..+++...
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 578999999999999999999999855899999998775 55555444321
Q ss_pred ---------CCCCc------cHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------ASTVP------FAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~~~~~------~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+.... ..+...+++++|+.+++.++++++|.|++ .++||++||..+.....
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~------------ 154 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRR------------ 154 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCC------------
Confidence 00000 11223357999999999999999999975 38999999987732111
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----C
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----N 373 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----~ 373 (484)
+...|++||+|+.+|+++++.|+.++ ||+|++|+||+++|++..... .
T Consensus 155 ------------------------~~~~Y~~sKaa~~~~~~~l~~el~~~----~i~v~~v~Pg~v~t~~~~~~~~~~~~ 206 (253)
T PRK07904 155 ------------------------SNFVYGSTKAGLDGFYLGLGEALREY----GVRVLVVRPGQVRTRMSAHAKEAPLT 206 (253)
T ss_pred ------------------------CCcchHHHHHHHHHHHHHHHHHHhhc----CCEEEEEeeCceecchhccCCCCCCC
Confidence 11679999999999999999999877 999999999999999876542 2
Q ss_pred CCHHhHHHHHHHHHhh
Q psy8786 374 VNIFDDSSTFNAFERV 389 (484)
Q Consensus 374 ~~peevA~~~~~L~s~ 389 (484)
.+|+++|+.++..+..
T Consensus 207 ~~~~~~A~~i~~~~~~ 222 (253)
T PRK07904 207 VDKEDVAKLAVTAVAK 222 (253)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6899999999877743
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=193.20 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=132.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|+++||||++|||+++|++|+++ |++|++++|+.+.+++..+++...
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~-G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARR-GATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999998 899999999987766655544210
Q ss_pred -----------CCC--C------ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -----------AST--V------PFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -----------~~~--~------~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+.. . ...++++.++++|+.|++.++++++|.|++. ++||++||.++......
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p------- 187 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASP------- 187 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCC-------
Confidence 000 0 1235678899999999999999999999653 89999999755321111
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
....|++||+|+++|+++++.|+.++ ||+|++|+||+|+|++....
T Consensus 188 ----------------------------~~~~Y~asKaal~~l~~~la~e~~~~----gI~v~~v~pg~v~T~~~~~~~~ 235 (293)
T PRK05866 188 ----------------------------LFSVYNASKAALSAVSRVIETEWGDR----GVHSTTLYYPLVATPMIAPTKA 235 (293)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHHHHhccc----CcEEEEEEcCcccCcccccccc
Confidence 11689999999999999999999876 99999999999999987532
Q ss_pred ----CCCCHHhHHHHHHHHHh
Q psy8786 372 ----GNVNIFDDSSTFNAFER 388 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s 388 (484)
...+|+++|+.++..+.
T Consensus 236 ~~~~~~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 236 YDGLPALTADEAAEWMVTAAR 256 (293)
T ss_pred ccCCCCCCHHHHHHHHHHHHh
Confidence 22689999998776653
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=205.77 Aligned_cols=180 Identities=23% Similarity=0.242 Sum_probs=143.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc--hhHHHHHHH----------------------HHhc----
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK--KKGAEAVQV----------------------LKDR---- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~--~~~~~~~~~----------------------l~~~---- 234 (484)
.++||++|||||++|||+++|+.|+++ |++|++++|.. +.+++..++ +.+.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~-Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 285 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARD-GAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGL 285 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999998 89999988742 222222221 1110
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHH--hhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFP--LLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp--~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
+ ....+.+.|+..+++|+.|++.+++++.+ .++++++||++||.++. +.+.
T Consensus 286 d~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~------------- 352 (450)
T PRK08261 286 DIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRG------------- 352 (450)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCC-------------
Confidence 0 01224578999999999999999999999 45566999999998874 2222
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------ 372 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------ 372 (484)
+..|+++|+++++|+++++.++.++ ||++|+|+||+++|++.....
T Consensus 353 ------------------------~~~Y~asKaal~~~~~~la~el~~~----gi~v~~v~PG~i~t~~~~~~~~~~~~~ 404 (450)
T PRK08261 353 ------------------------QTNYAASKAGVIGLVQALAPLLAER----GITINAVAPGFIETQMTAAIPFATREA 404 (450)
T ss_pred ------------------------ChHHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEEeCcCcchhhhccchhHHHH
Confidence 2789999999999999999999887 999999999999999865321
Q ss_pred ---------CCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 373 ---------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 373 ---------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
...|+|+++++.||+++.+.+++|+.+ .++|.
T Consensus 405 ~~~~~~l~~~~~p~dva~~~~~l~s~~~~~itG~~i--~v~g~ 445 (450)
T PRK08261 405 GRRMNSLQQGGLPVDVAETIAWLASPASGGVTGNVV--RVCGQ 445 (450)
T ss_pred HhhcCCcCCCCCHHHHHHHHHHHhChhhcCCCCCEE--EECCC
Confidence 158999999999999999999999998 45553
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=188.39 Aligned_cols=179 Identities=22% Similarity=0.248 Sum_probs=141.7
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc---------------------------------
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR--------------------------------- 234 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~--------------------------------- 234 (484)
++||||++|||+++|+.|+++ |++|++++|+ .+.+++..+++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQ-GAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999998 8999999998 55544443332210
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
+ ......++++..+++|+.+++.+++.+++.|++. ++||++||.++......
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~------------- 147 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPD------------- 147 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCC-------------
Confidence 0 0112346789999999999999999999999753 79999999887432211
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
...|+++|+++++++++++.|++++ ..+|+||+|+||+++|++....
T Consensus 148 -----------------------~~~Y~~sK~a~~~~~~~la~e~~~~--~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~ 202 (251)
T PRK07069 148 -----------------------YTAYNASKAAVASLTKSIALDCARR--GLDVRCNSIHPTFIRTGIVDPIFQRLGEEE 202 (251)
T ss_pred -----------------------CchhHHHHHHHHHHHHHHHHHhccc--CCcEEEEEEeecccCCcchhHHhhhccchh
Confidence 2689999999999999999998765 1259999999999999985321
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+++.+++|+++.+.+++|+.+ .+++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i--~~~~g~~ 249 (251)
T PRK07069 203 ATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAEL--VIDGGIC 249 (251)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCccCCEE--EECCCee
Confidence 1157999999999999999999999988 6677654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-21 Score=185.40 Aligned_cols=178 Identities=19% Similarity=0.201 Sum_probs=142.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|+++||||++|||++++++|+++ |++|++++|+++..++..+++...
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999 899999999876655544443210
Q ss_pred ----------CC---------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 ----------AS---------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 ----------~~---------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. .....+.++.++++|+.+++.+++++++.+.+ .++||++||..+...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 151 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY---------- 151 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC----------
Confidence 11 01234778899999999999999999998854 479999999876421
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
...|++||+|++++++++++++... ||++++|+||.++|++.....
T Consensus 152 -----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~pg~~~t~~~~~~~~ 198 (250)
T PRK07774 152 -----------------------------SNFYGLAKVGLNGLTQQLARELGGM----NIRVNAIAPGPIDTEATRTVTP 198 (250)
T ss_pred -----------------------------ccccHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecCcccCccccccCC
Confidence 1679999999999999999998776 999999999999999865322
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
..+|+|+++.+++++++...+.+|+.+ .++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~--~v~~g 245 (250)
T PRK07774 199 KEFVADMVKGIPLSRMGTPEDLVGMCLFLLSDEASWITGQIF--NVDGG 245 (250)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhhCcCCCEE--EECCC
Confidence 157899999999998877677888877 34444
|
|
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=189.03 Aligned_cols=149 Identities=26% Similarity=0.348 Sum_probs=120.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||+|++|||.+|||++++++|+++ |..+.+++-+.|+.+ +.++++..
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~k-gik~~~i~~~~En~~-a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEK-GIKVLVIDDSEENPE-AIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHc-CchheeehhhhhCHH-HHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 4678999999999999999999999999 776666655555433 23333322
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCc-cccccchHHHHHHHhhc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAG-HLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag-~~~~~~~~~~~~~~~~~ 297 (484)
+.....+.+|+.++.+|+.|.++.+..++|+|.+ +|-|||+||+.| .+.+..
T Consensus 79 ~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~----------- 147 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVF----------- 147 (261)
T ss_pred HHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccc-----------
Confidence 3344557899999999999999999999999964 479999999999 555553
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
..|++||+++.+|||+||... ++.+.||++|+||||+++|++....
T Consensus 148 --------------------------pVY~AsKaGVvgFTRSla~~a--yy~~sGV~~~avCPG~t~t~l~~~~ 193 (261)
T KOG4169|consen 148 --------------------------PVYAASKAGVVGFTRSLADLA--YYQRSGVRFNAVCPGFTRTDLAENI 193 (261)
T ss_pred --------------------------hhhhhcccceeeeehhhhhhh--hHhhcCEEEEEECCCcchHHHHHHH
Confidence 789999999999999998743 2455699999999999999987654
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=192.74 Aligned_cols=177 Identities=21% Similarity=0.276 Sum_probs=121.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|+++||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKR-GWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999 899999999987766655554210
Q ss_pred ----------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC----CEEEEEeCCCccccccc-------
Q psy8786 235 ----------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH----ARVVNLSSSAGHLSQIT------- 286 (484)
Q Consensus 235 ----------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~----grIV~iSS~ag~~~~~~------- 286 (484)
+. ...+.++++.++++|+.|++.++++++|.|++. +|||++||..+......
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 10 122457899999999999999999999999653 59999999876321100
Q ss_pred hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-AT 365 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T 365 (484)
..++.... ...... ...... .....+ .+..+|+.||++++.+++.+++++... .||+||+|+||.| .|
T Consensus 162 ~~~~~~~~-~~~~~~-~~~~~~----~~~~~~--~~~~~Y~~SK~a~~~~~~~la~~~~~~---~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 162 PADLGDLS-GFEAGF-KAPISM----ADGKKF--KPGKAYKDSKLCNMLTMRELHRRYHES---TGITFSSLYPGCVADT 230 (322)
T ss_pred ccchhhhh-cchhcc-cccccc----cCccCC--CccchhhHhHHHHHHHHHHHHHhhccc---CCeEEEEecCCcccCC
Confidence 00000000 000000 000000 000011 133789999999999999999988432 3899999999999 59
Q ss_pred CCccCC
Q psy8786 366 NMSSFM 371 (484)
Q Consensus 366 ~m~~~~ 371 (484)
++.+..
T Consensus 231 ~~~~~~ 236 (322)
T PRK07453 231 PLFRNT 236 (322)
T ss_pred cccccC
Confidence 987653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=190.21 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=127.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH---------------------HHHHhc---------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV---------------------QVLKDR--------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~---------------------~~l~~~--------- 234 (484)
++|+++||||++|||+++|++|+++ |++|++++|+.+++++.. +++.+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQ-GYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN 80 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5799999999999999999999998 899999999876554321 111110
Q ss_pred --C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHHHHhhccccccc
Q psy8786 235 --A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 235 --~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
+ ......++++.++++|+.+++.+++.++|.|++. ++||++||..+. ..+..
T Consensus 81 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~----------------- 143 (273)
T PRK06182 81 NAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLG----------------- 143 (273)
T ss_pred CCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCCc-----------------
Confidence 0 1122457899999999999999999999999653 799999998763 22221
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------------
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------ 371 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------ 371 (484)
..|++||+++++++++++.|+.+. ||+||+|+||+|+|++....
T Consensus 144 --------------------~~Y~~sKaa~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 199 (273)
T PRK06182 144 --------------------AWYHATKFALEGFSDALRLEVAPF----GIDVVVIEPGGIKTEWGDIAADHLLKTSGNGA 199 (273)
T ss_pred --------------------cHhHHHHHHHHHHHHHHHHHhccc----CCEEEEEecCCcccccchhhhhhhcccccccc
Confidence 579999999999999999998876 99999999999999975211
Q ss_pred -------------------CCCCHHhHHHHHHHHHhh
Q psy8786 372 -------------------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 -------------------~~~~peevA~~~~~L~s~ 389 (484)
...+|+++|+.++++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~~~~ 236 (273)
T PRK06182 200 YAEQAQAVAASMRSTYGSGRLSDPSVIADAISKAVTA 236 (273)
T ss_pred hHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHhC
Confidence 114788888888887753
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=185.22 Aligned_cols=173 Identities=21% Similarity=0.200 Sum_probs=134.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHh---------------------------c---
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKD---------------------------R--- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~---------------------------~--- 234 (484)
+|++|||||++|||.++|++|+++ |++|+++++ +++..++..+++.. .
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAER-GYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999998 888887764 43333333222211 0
Q ss_pred --------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 --------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 --------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+. .....++++.++++|+.+++.+++++++.|++ .|+||++||.++. ..+..
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------- 153 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGE------- 153 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCC-------
Confidence 11 11234788899999999999999999998853 3689999998773 32211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
...|++||++++++++.++.++.++ ||+||+|+||.+.|++.....
T Consensus 154 -----------------------------~~~Y~~sKaa~~~~~~~la~~~~~~----~i~v~~i~pg~v~~~~~~~~~~ 200 (248)
T PRK06123 154 -----------------------------YIDYAASKGAIDTMTIGLAKEVAAE----GIRVNAVRPGVIYTEIHASGGE 200 (248)
T ss_pred -----------------------------ccchHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCcccCchhhccCC
Confidence 1469999999999999999998876 999999999999999743210
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
..+|+|+++.+.|++++...+++|+.+
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~ 242 (248)
T PRK06123 201 PGRVDRVKAGIPMGRGGTAEEVARAILWLLSDEASYTTGTFI 242 (248)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence 157999999999999988889999987
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=184.29 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=141.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHH---------------------------HHHhc----
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQ---------------------------VLKDR---- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~---------------------------~l~~~---- 234 (484)
|+++||||++|||+++|+.|+++ |++|++++|+.+ ..++..+ .+...
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLND-GYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999998 899999998843 1111111 11110
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
.......++++.++++|+.+++.+++++++.+++ .++||++||..+.....
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~-------------- 147 (245)
T PRK12824 82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQF-------------- 147 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCC--------------
Confidence 0122345889999999999999999999999864 47999999987742211
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------- 372 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------- 372 (484)
+...|++||+|++++++.++.++.+. ||++|+|+||++.|++.....
T Consensus 148 ----------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~pg~~~t~~~~~~~~~~~~~~ 201 (245)
T PRK12824 148 ----------------------GQTNYSAAKAGMIGFTKALASEGARY----GITVNCIAPGYIATPMVEQMGPEVLQSI 201 (245)
T ss_pred ----------------------CChHHHHHHHHHHHHHHHHHHHHHHh----CeEEEEEEEcccCCcchhhcCHHHHHHH
Confidence 12689999999999999999998877 999999999999999765321
Q ss_pred --------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 --------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 --------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++|+++.+.+|+++.+.+++|+.+ .+++++
T Consensus 202 ~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~--~~~~g~ 242 (245)
T PRK12824 202 VNQIPMKRLGTPEEIAAAVAFLVSEAAGFITGETI--SINGGL 242 (245)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEE--EECCCe
Confidence 258999999999999888889999998 666665
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-21 Score=179.95 Aligned_cols=165 Identities=11% Similarity=0.051 Sum_probs=129.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----------hHHHHHHHHHhc-------C------CCCccHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----------KGAEAVQVLKDR-------A------STVPFAIQA 244 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----------~~~~~~~~l~~~-------~------~~~~~~~~~ 244 (484)
+++||||++|||+++|++|+++ ++|++++|+.+ ..++..+++... + ......++|
T Consensus 2 ~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~ 79 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR--HEVITAGRSSGDVQVDITDPASIRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDF 79 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCCceEecCCChHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHH
Confidence 6999999999999999999986 78998888542 122333322111 1 112345789
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCC
Q psy8786 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD 323 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
+..+++|+.+++++++++.|.|+++++|+++||..+. +.+. .
T Consensus 80 ~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~-------------------------------------~ 122 (199)
T PRK07578 80 NVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPG-------------------------------------G 122 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCC-------------------------------------c
Confidence 9999999999999999999999888999999998873 2222 2
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC------CCCCCHHhHHHHHHHHHhhhccccccc
Q psy8786 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------MGNVNIFDDSSTFNAFERVISHFLIGQ 397 (484)
Q Consensus 324 ~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------~~~~~peevA~~~~~L~s~~a~~itG~ 397 (484)
..|++||+|+++|+++++.|+ ++ ||+||+|+||+++|++... ....+|+|+|+.+..+++ ...+|+
T Consensus 123 ~~Y~~sK~a~~~~~~~la~e~-~~----gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~g~ 194 (199)
T PRK07578 123 ASAATVNGALEGFVKAAALEL-PR----GIRINVVSPTVLTESLEKYGPFFPGFEPVPAARVALAYVRSVE---GAQTGE 194 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHc-cC----CeEEEEEcCCcccCchhhhhhcCCCCCCCCHHHHHHHHHHHhc---cceeeE
Confidence 789999999999999999998 66 9999999999999997431 124789999999888875 357887
Q ss_pred cc
Q psy8786 398 QI 399 (484)
Q Consensus 398 ~i 399 (484)
.+
T Consensus 195 ~~ 196 (199)
T PRK07578 195 VY 196 (199)
T ss_pred Ee
Confidence 66
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=186.15 Aligned_cols=176 Identities=21% Similarity=0.202 Sum_probs=141.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++|+++||||++|||+.+++.|+++ |++ |++++|+.++.++..+++...
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAER-GAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999998 787 999999876555443333110
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
. ......+.++.++++|+.+++.+++++++.+++ .+++|++||..+......
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~-------- 153 (260)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPF-------- 153 (260)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCC--------
Confidence 0 012345788899999999999999999999864 378999999887432111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC----
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF---- 370 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~---- 370 (484)
...|+++|+++++++++++.|+... ||+||+|+||++.|++...
T Consensus 154 ----------------------------~~~Y~~sK~a~~~~~~~~a~e~~~~----~i~v~~i~pg~~~t~~~~~~~~~ 201 (260)
T PRK06198 154 ----------------------------LAAYCASKGALATLTRNAAYALLRN----RIRVNGLNIGWMATEGEDRIQRE 201 (260)
T ss_pred ----------------------------cchhHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeccccCcchhhhhhh
Confidence 1689999999999999999998876 8999999999999986311
Q ss_pred ------------------CCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 371 ------------------MGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 371 ------------------~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
....+++|+++.+++++++.+++++|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~ 248 (260)
T PRK06198 202 FHGAPDDWLEKAAATQPFGRLLDPDEVARAVAFLLSDESGLMTGSVI 248 (260)
T ss_pred ccCCChHHHHHHhccCCccCCcCHHHHHHHHHHHcChhhCCccCceE
Confidence 01258999999999999999999999988
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-21 Score=184.39 Aligned_cols=179 Identities=21% Similarity=0.286 Sum_probs=138.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++|+++||||++|||.++|++|+++ |++|+++++ +++..++..+++...
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQE-GAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999998 888877654 444444433333210
Q ss_pred ----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+. .....+.++..+++|+.+++.+++++++.+.+ .++||++||..+.....
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 151 (247)
T PRK12935 83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGF----------- 151 (247)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCC-----------
Confidence 00 11233788999999999999999999999854 47999999987732211
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
+...|++||+|++++++.++.++.+. ||+++.|+||+++|++.....
T Consensus 152 -------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~pg~v~t~~~~~~~~~~~ 202 (247)
T PRK12935 152 -------------------------GQTNYSAAKAGMLGFTKSLALELAKT----NVTVNAICPGFIDTEMVAEVPEEVR 202 (247)
T ss_pred -------------------------CCcchHHHHHHHHHHHHHHHHHHHHc----CcEEEEEEeCCCcChhhhhccHHHH
Confidence 12789999999999999999999876 999999999999998754332
Q ss_pred -----------CCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
...|+|+++.+.++++. ..+++|+.+ .++++
T Consensus 203 ~~~~~~~~~~~~~~~edva~~~~~~~~~-~~~~~g~~~--~i~~g 244 (247)
T PRK12935 203 QKIVAKIPKKRFGQADEIAKGVVYLCRD-GAYITGQQL--NINGG 244 (247)
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHcCc-ccCccCCEE--EeCCC
Confidence 17899999999999875 458899987 45544
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=207.91 Aligned_cols=167 Identities=18% Similarity=0.235 Sum_probs=135.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
..++++++|||||++|||+++|++|+++ |++|++++|+.+++++..++++..
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFARE-GAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999999998 899999999987776655544321
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
.......++++.++++|+.|++.++++++|.|++ +|+||++||.+++.....
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------- 461 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRS-------- 461 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCC--------
Confidence 0112345889999999999999999999999865 379999999988432221
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|+|+|.....
T Consensus 462 ----------------------------~~~Y~~sKaa~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 509 (582)
T PRK05855 462 ----------------------------LPAYATSKAAVLMLSECLRAELAAA----GIGVTAICPGFVDTNIVATTRFA 509 (582)
T ss_pred ----------------------------CcHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEEeCCCcccchhccccC
Confidence 2789999999999999999999877 999999999999998865321
Q ss_pred ---------------------CCCHHhHHHHHHHHHhh
Q psy8786 373 ---------------------NVNIFDDSSTFNAFERV 389 (484)
Q Consensus 373 ---------------------~~~peevA~~~~~L~s~ 389 (484)
..+||++|+.+++.++.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~~~~~ 547 (582)
T PRK05855 510 GADAEDEARRRGRADKLYQRRGYGPEKVAKAIVDAVKR 547 (582)
T ss_pred CcccchhhhHHhhhhhhccccCCCHHHHHHHHHHHHHc
Confidence 14789999998887743
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-21 Score=187.64 Aligned_cols=170 Identities=22% Similarity=0.247 Sum_probs=135.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+++||||++|||+++|++|+++ |++|++++|+.+..++..+++...
T Consensus 1 k~vlItGas~giG~~la~~la~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ-GAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999998 899999999887665554433210
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+ ......++++..+++|+.|++.++++++|.|.+ +++||++||..+. +.+.
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~------------ 147 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPW------------ 147 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCC------------
Confidence 0 112244788999999999999999999999853 4799999998763 2222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|+.+++++++.|+.++ ||+||+|+||.++|++....
T Consensus 148 -------------------------~~~Y~~sK~a~~~~~~~l~~e~~~~----~i~v~~v~Pg~v~t~~~~~~~~~~~~ 198 (272)
T PRK07832 148 -------------------------HAAYSASKFGLRGLSEVLRFDLARH----GIGVSVVVPGAVKTPLVNTVEIAGVD 198 (272)
T ss_pred -------------------------CcchHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCcccCcchhcccccccC
Confidence 2689999999999999999999876 99999999999999975421
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+|+|+|+.+++++. ...++++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~-~~~~~~~~~~ 240 (272)
T PRK07832 199 REDPRVQKWVDRFRGHAVTPEKAAEKILAGVE-KNRYLVYTSP 240 (272)
T ss_pred cchhhHHHHHHhcccCCCCHHHHHHHHHHHHh-cCCeEEecCc
Confidence 12689999999999884 4567776654
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=184.68 Aligned_cols=176 Identities=23% Similarity=0.315 Sum_probs=138.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHh----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKD---------------------------- 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~---------------------------- 233 (484)
++++|+++||||++|||+++|+.|+++ |++|++. .|+.++.++..+.+..
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~-G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLAND-GALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999998 8888764 6776554433322211
Q ss_pred --------c--------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHH
Q psy8786 234 --------R--------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 234 --------~--------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
. + ......+.++..+++|+.+++.+++.+.+.+++.+++|++||..+.....
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~------ 155 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFT------ 155 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCC------
Confidence 0 0 01123467888999999999999999999988778999999987642211
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||+|++++++++++++.+. ||+|++|+||++.|++....
T Consensus 156 ------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~----~i~v~~v~pg~~~t~~~~~~ 201 (254)
T PRK12746 156 ------------------------------GSIAYGLSKGALNTMTLPLAKHLGER----GITVNTIMPGYTKTDINAKL 201 (254)
T ss_pred ------------------------------CCcchHhhHHHHHHHHHHHHHHHhhc----CcEEEEEEECCccCcchhhh
Confidence 12689999999999999999998776 99999999999999985432
Q ss_pred C-----------------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 G-----------------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ~-----------------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ..+++|+++.+.+++++.+.+++|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~ 246 (254)
T PRK12746 202 LDDPEIRNFATNSSVFGRIGQVEDIADAVAFLASSDSRWVTGQII 246 (254)
T ss_pred ccChhHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCcCCCEE
Confidence 1 147899999999999888888899876
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=182.34 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=140.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHH---------------------------hc----
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLK---------------------------DR---- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~---------------------------~~---- 234 (484)
|++|||||++|||+++|++|+++ |++|++++| +.+..++..+++. +.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD-GYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999998 889988887 5444333222211 00
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
+ ......+.++..+++|+.+++.+++++++.|++. ++||++||..+.....
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~-------------- 145 (242)
T TIGR01829 80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQF-------------- 145 (242)
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC--------------
Confidence 0 1122346888999999999999999999998653 7999999987632111
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------- 372 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------- 372 (484)
+...|+++|+++..+++.++.++... ||++|+|+||++.|++.....
T Consensus 146 ----------------------~~~~y~~sk~a~~~~~~~la~~~~~~----~i~v~~i~pg~~~t~~~~~~~~~~~~~~ 199 (242)
T TIGR01829 146 ----------------------GQTNYSAAKAGMIGFTKALAQEGATK----GVTVNTISPGYIATDMVMAMREDVLNSI 199 (242)
T ss_pred ----------------------CcchhHHHHHHHHHHHHHHHHHhhhh----CeEEEEEeeCCCcCccccccchHHHHHH
Confidence 12689999999999999999998876 999999999999999765321
Q ss_pred --------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 --------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 --------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+++++.+.||+++...+++|+.+ .++|++
T Consensus 200 ~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~--~~~gg~ 240 (242)
T TIGR01829 200 VAQIPVGRLGRPEEIAAAVAFLASEEAGYITGATL--SINGGL 240 (242)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEE--EecCCc
Confidence 268999999999999998889999998 566664
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=184.29 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=145.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+++|+++||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 899999999987766555444211
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.......++++..+++|+.+++.+++.+++.|++ .++||++||..+.....
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~------------ 148 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSA------------ 148 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC------------
Confidence 0111234678889999999999999999999864 47999999987642211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------- 370 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------- 370 (484)
+...|+++|+++.++++.++.++... ||+|++|+||++.|++...
T Consensus 149 ------------------------~~~~y~~~k~a~~~~~~~l~~~~~~~----~i~v~~~~pg~v~~~~~~~~~~~~~~ 200 (258)
T PRK12429 149 ------------------------GKAAYVSAKHGLIGLTKVVALEGATH----GVTVNAICPGYVDTPLVRKQIPDLAK 200 (258)
T ss_pred ------------------------CcchhHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCCCcchhhhhhhhhhcc
Confidence 12789999999999999999998766 9999999999999986421
Q ss_pred --------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 --------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 --------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
....+++|+|+.+.+++.+....++|+.+ .++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~--~~~~g~~ 256 (258)
T PRK12429 201 ERGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQAW--VVDGGWT 256 (258)
T ss_pred ccCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCccccCccCCeE--EeCCCEe
Confidence 01257999999999999887778899987 6666664
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=182.84 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=128.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH--------------------Hhc-----------C
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL--------------------KDR-----------A 235 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l--------------------~~~-----------~ 235 (484)
|+++||||++|||+++|++|+++ |++|++++|+++++++..+.. ... +
T Consensus 2 ~~vlItGas~giG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQ-GWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 78999999999999999999998 899999999977665443221 000 0
Q ss_pred ------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccccccc
Q psy8786 236 ------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 236 ------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
......++++.++++|+.|++++++++.|+|+++++||++||.++. +.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~----------------------- 137 (240)
T PRK06101 81 DCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPR----------------------- 137 (240)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCC-----------------------
Confidence 0012447789999999999999999999999878899999998773 2222
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----CCCHHhHHHHH
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-----NVNIFDDSSTF 383 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-----~~~peevA~~~ 383 (484)
...|++||++++++++.++.|+.++ ||+|++|+||+|.|++..... ..+|+++++.+
T Consensus 138 --------------~~~Y~asK~a~~~~~~~l~~e~~~~----gi~v~~v~pg~i~t~~~~~~~~~~~~~~~~~~~a~~i 199 (240)
T PRK06101 138 --------------AEAYGASKAAVAYFARTLQLDLRPK----GIEVVTVFPGFVATPLTDKNTFAMPMIITVEQASQEI 199 (240)
T ss_pred --------------CchhhHHHHHHHHHHHHHHHHHHhc----CceEEEEeCCcCCCCCcCCCCCCCCcccCHHHHHHHH
Confidence 2689999999999999999999877 999999999999999865431 25889999988
Q ss_pred HHHH
Q psy8786 384 NAFE 387 (484)
Q Consensus 384 ~~L~ 387 (484)
....
T Consensus 200 ~~~i 203 (240)
T PRK06101 200 RAQL 203 (240)
T ss_pred HHHH
Confidence 7554
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-21 Score=182.95 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=135.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchh-------------------HHHHHHHHHhc-------CC---
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKK-------------------GAEAVQVLKDR-------AS--- 236 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~-------------------~~~~~~~l~~~-------~~--- 236 (484)
|+|+||||++|||+++|++|++++ +..|++.+|+... .++..+.+... +.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~~ 80 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLHT 80 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccccccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCccccc
Confidence 469999999999999999999973 2455555554211 11111111111 11
Q ss_pred ---------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 237 ---------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 237 ---------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
.....+.++..+++|+.+++.+++.++|.|++. ++|+++||..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~~------------------- 141 (235)
T PRK09009 81 QDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDNR------------------- 141 (235)
T ss_pred cccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccCC-------------------
Confidence 011236788999999999999999999998753 79999998665211100
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------CCCHHh
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------NVNIFD 378 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------~~~pee 378 (484)
.. +...|++||+|+++|+++|+.|+.+. ..||+||+|+||+|+|++..... ..+|+|
T Consensus 142 ------------~~--~~~~Y~asK~a~~~~~~~la~e~~~~--~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~ 205 (235)
T PRK09009 142 ------------LG--GWYSYRASKAALNMFLKTLSIEWQRS--LKHGVVLALHPGTTDTALSKPFQQNVPKGKLFTPEY 205 (235)
T ss_pred ------------CC--CcchhhhhHHHHHHHHHHHHHHhhcc--cCCeEEEEEcccceecCCCcchhhccccCCCCCHHH
Confidence 00 12689999999999999999998752 13899999999999999875432 368999
Q ss_pred HHHHHHHHHhhhccccccccccccccceee
Q psy8786 379 DSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 379 vA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+|+.+.+++++.+.+++|+.+ .++|+|.
T Consensus 206 ~a~~~~~l~~~~~~~~~g~~~--~~~g~~~ 233 (235)
T PRK09009 206 VAQCLLGIIANATPAQSGSFL--AYDGETL 233 (235)
T ss_pred HHHHHHHHHHcCChhhCCcEE--eeCCcCC
Confidence 999999999998889999988 5666663
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-21 Score=176.05 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=120.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|++.|.++|||||++|||+++|++|.+. |..|++++|++++++++.++...-
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~el-gN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLEL-GNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHh-CCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCch
Confidence 3568999999999999999999999999 899999999999888776654321
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.......+..+..+.+|+.+++.++++++|++.++ +.|||+||..+......
T Consensus 80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~----------- 148 (245)
T COG3967 80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMAS----------- 148 (245)
T ss_pred heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccc-----------
Confidence 11223346678889999999999999999999664 89999999888432221
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...||++|+|++.++.+|+.++... +|.|.-+.|..|+|+
T Consensus 149 -------------------------~PvYcaTKAaiHsyt~aLR~Qlk~t----~veVIE~~PP~V~t~ 188 (245)
T COG3967 149 -------------------------TPVYCATKAAIHSYTLALREQLKDT----SVEVIELAPPLVDTT 188 (245)
T ss_pred -------------------------cccchhhHHHHHHHHHHHHHHhhhc----ceEEEEecCCceecC
Confidence 1689999999999999999998876 899999999999996
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=181.17 Aligned_cols=182 Identities=22% Similarity=0.281 Sum_probs=145.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+|.+|++|||||++|||.++|+.|+++ |++|+++ +|+.++.++..+.+...
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999998 8999888 88876655444433210
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.+++.+++++.+.+.+. +++|++||..+......
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~--------- 151 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASC--------- 151 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCC---------
Confidence 0 0122347789999999999999999999988654 78999999876322111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
...|+.+|++++.+++.++.++... ||++++|+||+++|++.+...
T Consensus 152 ---------------------------~~~y~~sK~a~~~~~~~~~~~~~~~----gi~~~~v~pg~v~t~~~~~~~~~~ 200 (247)
T PRK05565 152 ---------------------------EVLYSASKGAVNAFTKALAKELAPS----GIRVNAVAPGAIDTEMWSSFSEED 200 (247)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHHHHHHHHc----CeEEEEEEECCccCccccccChHH
Confidence 1689999999999999999998776 999999999999998765432
Q ss_pred ------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++++++.+.++++.....++|+.+ .+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~~~~~ 245 (247)
T PRK05565 201 KEGLAEEIPLGRLGKPEEIAKVVLFLASDDASYITGQII--TVDGGW 245 (247)
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEE--EecCCc
Confidence 158899999999999998899999998 566554
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=183.74 Aligned_cols=180 Identities=18% Similarity=0.138 Sum_probs=143.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|+++||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAA-GDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 478999999999999999999998 889999999877655444333110
Q ss_pred -----C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -----A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
+ ......+.++..+++|+.+++.+.+++.+.+++ .++||++||..+.....
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 144 (257)
T PRK07074 81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAALG---------------- 144 (257)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCCC----------------
Confidence 0 011234778888999999999999999998754 37899999976532111
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
...|+++|+++++++++++.+++++ ||+||+++||++.|++....
T Consensus 145 ---------------------~~~y~~sK~a~~~~~~~~a~~~~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~ 199 (257)
T PRK07074 145 ---------------------HPAYSAAKAGLIHYTKLLAVEYGRF----GIRANAVAPGTVKTQAWEARVAANPQVFEE 199 (257)
T ss_pred ---------------------CcccHHHHHHHHHHHHHHHHHHhHh----CeEEEEEEeCcCCcchhhcccccChHHHHH
Confidence 1579999999999999999999887 99999999999999974321
Q ss_pred --------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 --------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 --------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
....++|+++.+.+|+++...+++|+.+ .+++++..
T Consensus 200 ~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~--~~~~g~~~ 243 (257)
T PRK07074 200 LKKWYPLQDFATPDDVANAVLFLASPAARAITGVCL--PVDGGLTA 243 (257)
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEE--EeCCCcCc
Confidence 1278999999999999988889999988 56666644
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=208.86 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=147.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----c---------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----R--------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----~--------------------- 234 (484)
..+|+||++|||||++|||+++|++|+++ |++|++++|+.+.+++..+++.. .
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~-Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAE-GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999 89999999997766554443321 0
Q ss_pred --------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHH
Q psy8786 235 --------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 235 --------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
+ ......++|+..+++|+.+++.+++++++.|++ +++||++||..+. +.+.
T Consensus 488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~----- 562 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKN----- 562 (676)
T ss_pred HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCC-----
Confidence 0 112234789999999999999999999999865 3699999998763 3222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC--CCc
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT--NMS 368 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T--~m~ 368 (484)
..+|++||+|+++++++++.|++++ |||||+|+||.|.| .++
T Consensus 563 --------------------------------~~aY~aSKaA~~~l~r~lA~el~~~----gIrVn~V~Pg~V~~~s~~~ 606 (676)
T TIGR02632 563 --------------------------------ASAYSAAKAAEAHLARCLAAEGGTY----GIRVNTVNPDAVLQGSGIW 606 (676)
T ss_pred --------------------------------CHHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEECCceecCcccc
Confidence 2789999999999999999999877 99999999999864 232
Q ss_pred cCC---------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 369 SFM---------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 369 ~~~---------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
... ...+|+|+|+.+.||+++.+.++||+.+ .+||++..
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i--~vDGG~~~ 672 (676)
T TIGR02632 607 DGEWREERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCII--TVDGGVPA 672 (676)
T ss_pred cccchhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEE--EECCCchh
Confidence 100 1168999999999999988899999999 57777644
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=178.65 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=144.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|+++||||++|||.++++.|+++ |++|++++|++++.++..+++...
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKE-GAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999998 899999999887665543333210
Q ss_pred ---------CCC----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 ---------AST----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ---------~~~----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
... ....+.++..+++|+.+++.+.+.++|.+++++++|++||..+...+..
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~--------------- 145 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASP--------------- 145 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCC---------------
Confidence 000 0112567788999999999999999999988899999999866321111
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC----------C
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----------M 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----------~ 371 (484)
+...|++||+++..+++.++.++... ||++++|+||++.|++... .
T Consensus 146 --------------------~~~~Y~~sK~~~~~~~~~~~~~~~~~----gi~v~~i~pg~v~~~~~~~~~~~~~~~~~~ 201 (238)
T PRK05786 146 --------------------DQLSYAVAKAGLAKAVEILASELLGR----GIRVNGIAPTTISGDFEPERNWKKLRKLGD 201 (238)
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCccCCCCCchhhhhhhccccC
Confidence 12679999999999999999998876 9999999999999987432 1
Q ss_pred CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++++++.+.+++++...+++|+.+ .+++++
T Consensus 202 ~~~~~~~va~~~~~~~~~~~~~~~g~~~--~~~~~~ 235 (238)
T PRK05786 202 DMAPPEDFAKVIIWLLTDEADWVDGVVI--PVDGGA 235 (238)
T ss_pred CCCCHHHHHHHHHHHhcccccCccCCEE--EECCcc
Confidence 1368999999999999988888999877 445544
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=183.52 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=133.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|+++||||++|||++++++|+++ |++|++++|+++..++...++...
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAA-GARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 468899999999999999999999999 899999999987665554432100
Q ss_pred --------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 --------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+ ......++++.++++|+.|++.+++.+.+.|++. ++||+++|..+. +.+.
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------ 148 (263)
T PRK09072 81 INVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPG------------ 148 (263)
T ss_pred CCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCC------------
Confidence 0 1112347788999999999999999999998664 899999998763 2222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|+++|+++.+++++++.++.++ ||+|++|+||+++|++....
T Consensus 149 -------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~Pg~~~t~~~~~~~~~~~~ 199 (263)
T PRK09072 149 -------------------------YASYCASKFALRGFSEALRRELADT----GVRVLYLAPRATRTAMNSEAVQALNR 199 (263)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCcccccchhhhcccccc
Confidence 1689999999999999999999876 99999999999999975421
Q ss_pred ----CCCCHHhHHHHHHHHHhh
Q psy8786 372 ----GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s~ 389 (484)
...+|+|+|+.++++...
T Consensus 200 ~~~~~~~~~~~va~~i~~~~~~ 221 (263)
T PRK09072 200 ALGNAMDDPEDVAAAVLQAIEK 221 (263)
T ss_pred cccCCCCCHHHHHHHHHHHHhC
Confidence 236899999999988853
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=178.50 Aligned_cols=183 Identities=18% Similarity=0.115 Sum_probs=143.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||+++||+++++.|+++ |++|++++|+.++..+..+++...
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFG 81 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHC-CCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999 899999999876544333222110
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+ ......+.++..+++|+.+++.+++++.+.+++ .++||++||..+.....
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 149 (239)
T PRK12828 82 RLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGP------------ 149 (239)
T ss_pred CcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCC------------
Confidence 0 011234677888999999999999999998854 47999999987642211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
+...|+++|+++..+++.++.++.+. ||++++|+||++.|++.....
T Consensus 150 ------------------------~~~~y~~sk~a~~~~~~~~a~~~~~~----~i~~~~i~pg~v~~~~~~~~~~~~~~ 201 (239)
T PRK12828 150 ------------------------GMGAYAAAKAGVARLTEALAAELLDR----GITVNAVLPSIIDTPPNRADMPDADF 201 (239)
T ss_pred ------------------------CcchhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCcccCcchhhcCCchhh
Confidence 12689999999999999999988776 999999999999998654321
Q ss_pred --CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 --NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 --~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++|+++.+.+++++...+++|+.+ .++|+.
T Consensus 202 ~~~~~~~dva~~~~~~l~~~~~~~~g~~~--~~~g~~ 236 (239)
T PRK12828 202 SRWVTPEQIAAVIAFLLSDEAQAITGASI--PVDGGV 236 (239)
T ss_pred hcCCCHHHHHHHHHHHhCcccccccceEE--EecCCE
Confidence 256999999999999887778899988 555543
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=186.81 Aligned_cols=144 Identities=20% Similarity=0.296 Sum_probs=115.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH---------------------HHHHHh----c------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA---------------------VQVLKD----R------ 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~---------------------~~~l~~----~------ 234 (484)
+|+++||||++|||+++|++|+++ |++|++++|+.+.+++. .+.+.+ .
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~ 82 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD-GWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN 82 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence 589999999999999999999998 89999999987654332 122111 0
Q ss_pred --------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 --------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 --------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
.......++++.++++|+.|++.+++.++|.|++. ++||++||..+......
T Consensus 83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~------------------ 144 (277)
T PRK05993 83 NGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKY------------------ 144 (277)
T ss_pred CCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCc------------------
Confidence 01122347889999999999999999999999753 79999999877422111
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|+++++++++.|+.+. ||+|++|+||+|+|++...
T Consensus 145 ------------------~~~Y~asK~a~~~~~~~l~~el~~~----gi~v~~v~Pg~v~T~~~~~ 188 (277)
T PRK05993 145 ------------------RGAYNASKFAIEGLSLTLRMELQGS----GIHVSLIEPGPIETRFRAN 188 (277)
T ss_pred ------------------cchHHHHHHHHHHHHHHHHHHhhhh----CCEEEEEecCCccCchhhH
Confidence 2789999999999999999999887 9999999999999998653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=180.20 Aligned_cols=172 Identities=18% Similarity=0.157 Sum_probs=136.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
++|+++||||++|||++++++|+++ |++|++++|+.++.++..+++...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4589999999999999999999999 889999999987665554433210
Q ss_pred --------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 235 --------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 --------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
+. ...+.++++..+++|+.+++.+++.+++.|++ .++||++||..+.....
T Consensus 84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------- 150 (241)
T PRK07454 84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFP------------- 150 (241)
T ss_pred CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCC-------------
Confidence 00 11234688999999999999999999998865 48999999987642211
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
+...|++||++++.+++.++.++.++ ||++|+|+||+++|++....
T Consensus 151 -----------------------~~~~Y~~sK~~~~~~~~~~a~e~~~~----gi~v~~i~pg~i~t~~~~~~~~~~~~~ 203 (241)
T PRK07454 151 -----------------------QWGAYCVSKAALAAFTKCLAEEERSH----GIRVCTITLGAVNTPLWDTETVQADFD 203 (241)
T ss_pred -----------------------CccHHHHHHHHHHHHHHHHHHHhhhh----CCEEEEEecCcccCCcccccccccccc
Confidence 12689999999999999999999877 99999999999999985421
Q ss_pred --CCCCHHhHHHHHHHHHhhhccccccc
Q psy8786 372 --GNVNIFDDSSTFNAFERVISHFLIGQ 397 (484)
Q Consensus 372 --~~~~peevA~~~~~L~s~~a~~itG~ 397 (484)
...+++++|+.+.+++++....+.+.
T Consensus 204 ~~~~~~~~~va~~~~~l~~~~~~~~~~~ 231 (241)
T PRK07454 204 RSAMLSPEQVAQTILHLAQLPPSAVIED 231 (241)
T ss_pred cccCCCHHHHHHHHHHHHcCCccceeee
Confidence 12689999999999998765554443
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=182.43 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=130.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------------------------c-----
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------------------------R----- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------------------------~----- 234 (484)
+|+++||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-GATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 378999999999999999999998 89999999987766554443211 0
Q ss_pred ------CCC------C-ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 ------AST------V-PFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 ------~~~------~-~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
+.. . ...++++.++++|+.|++.+++.++|.|++ .++||++||.++. +.+..
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~------------ 148 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGA------------ 148 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCC------------
Confidence 000 1 234789999999999999999999999854 4899999998874 32221
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----C
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-----N 373 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-----~ 373 (484)
..|++||++++.++++++.|+.++ ||+|++|+||+|+|++..... .
T Consensus 149 -------------------------~~Y~asK~a~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~ 199 (257)
T PRK07024 149 -------------------------GAYSASKAAAIKYLESLRVELRPA----GVRVVTIAPGYIRTPMTAHNPYPMPFL 199 (257)
T ss_pred -------------------------cchHHHHHHHHHHHHHHHHHhhcc----CcEEEEEecCCCcCchhhcCCCCCCCc
Confidence 689999999999999999999876 999999999999999864321 1
Q ss_pred CCHHhHHHHHHHHHhh
Q psy8786 374 VNIFDDSSTFNAFERV 389 (484)
Q Consensus 374 ~~peevA~~~~~L~s~ 389 (484)
.+|+++++.++.....
T Consensus 200 ~~~~~~a~~~~~~l~~ 215 (257)
T PRK07024 200 MDADRFAARAARAIAR 215 (257)
T ss_pred cCHHHHHHHHHHHHhC
Confidence 5899999998877643
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=183.99 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=115.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH------------------------Hhc------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL------------------------KDR------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l------------------------~~~------ 234 (484)
.+|++|||||++|||++++++|+++ |++|++++|+.+++++..+.. ...
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~ 81 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAA-GHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV 81 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4689999999999999999999998 899999999876554332211 000
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
.......+.++.++++|+.|++.++++++|.+++ .++||++||.++.....
T Consensus 82 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~---------------- 145 (277)
T PRK06180 82 LVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMP---------------- 145 (277)
T ss_pred EEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCC----------------
Confidence 0111234678899999999999999999999865 37999999988742211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
+...|++||+++++++++++.++.+. ||+|++|+||++.|++..
T Consensus 146 --------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~i~Pg~v~t~~~~ 189 (277)
T PRK06180 146 --------------------GIGYYCGSKFALEGISESLAKEVAPF----GIHVTAVEPGSFRTDWAG 189 (277)
T ss_pred --------------------CcchhHHHHHHHHHHHHHHHHHhhhh----CcEEEEEecCCcccCccc
Confidence 12789999999999999999999877 999999999999998743
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=183.67 Aligned_cols=173 Identities=21% Similarity=0.228 Sum_probs=132.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHH------------------------HHhc-C-----
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQV------------------------LKDR-A----- 235 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~------------------------l~~~-~----- 235 (484)
|+++||||++|||+++|++|+++ |++|++++|+. +.+++..+. +... .
T Consensus 2 k~vlItGasggiG~~ia~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK-GTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVS 80 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc-CCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCC
Confidence 68999999999999999999998 89999999986 222221111 1000 0
Q ss_pred ----------------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 236 ----------------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 236 ----------------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
....+.+++...+++|+.+++.+++.+++.+++ .++||++||..+.....
T Consensus 81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 149 (251)
T PRK06924 81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYF----------- 149 (251)
T ss_pred ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCC-----------
Confidence 012234788999999999999999999999865 36899999977632111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC------
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------ 370 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------ 370 (484)
+...|+++|+|++++++.++.|++.. +.||+||+|+||+++|++...
T Consensus 150 -------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~--~~~i~v~~v~Pg~v~t~~~~~~~~~~~ 202 (251)
T PRK06924 150 -------------------------GWSAYCSSKAGLDMFTQTVATEQEEE--EYPVKIVAFSPGVMDTNMQAQIRSSSK 202 (251)
T ss_pred -------------------------CcHHHhHHHHHHHHHHHHHHHHhhhc--CCCeEEEEecCCccccHhHHHHHhcCc
Confidence 12789999999999999999988632 238999999999999997431
Q ss_pred ---------------CCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 371 ---------------MGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 371 ---------------~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
....+|+|+|+.++++.++. .+++|+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~G~~~ 245 (251)
T PRK06924 203 EDFTNLDRFITLKEEGKLLSPEYVAKALRNLLETE-DFPNGEVI 245 (251)
T ss_pred ccchHHHHHHHHhhcCCcCCHHHHHHHHHHHHhcc-cCCCCCEe
Confidence 01368999999999999874 78899977
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=179.27 Aligned_cols=175 Identities=26% Similarity=0.365 Sum_probs=132.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh--HHHHHHHHH----hc----------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--GAEAVQVLK----DR---------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~--~~~~~~~l~----~~---------------------- 234 (484)
++++|+++||||++|||+++|++|+++ |++|+++.|+.+. .++..+... ..
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALARE-GARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 468899999999999999999999987 8888877776432 222222111 00
Q ss_pred --------------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 --------------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 --------------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. .....++++.++++|+.|++.+++.+.|.+++. +||++||..+. .....
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~Iv~isS~~~~-~~~~~------ 152 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ-RIVNISSVAGL-GGPPG------ 152 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC-eEEEECCchhc-CCCCC------
Confidence 11 112348999999999999999999888888866 99999999876 33220
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
..+|++||+|+++|++.++.|+.++ ||+||+|+||++.|++.....
T Consensus 153 -----------------------------~~~Y~~sK~al~~~~~~l~~e~~~~----gi~v~~v~PG~~~t~~~~~~~~ 199 (251)
T COG1028 153 -----------------------------QAAYAASKAALIGLTKALALELAPR----GIRVNAVAPGYIDTPMTAALES 199 (251)
T ss_pred -----------------------------cchHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEEeccCCCcchhhhhh
Confidence 1689999999999999999998887 999999999999999876422
Q ss_pred -----------------CCCHHhHHHHHHHHHhhh-ccccccccc
Q psy8786 373 -----------------NVNIFDDSSTFNAFERVI-SHFLIGQQI 399 (484)
Q Consensus 373 -----------------~~~peevA~~~~~L~s~~-a~~itG~~i 399 (484)
...|++++..+.|+.+.. ..+++|+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 244 (251)
T COG1028 200 AELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASYITGQTL 244 (251)
T ss_pred hhhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcchhccccCCEE
Confidence 235677777777766553 456666655
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=182.24 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=128.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~------ 234 (484)
.+|+++||||++|||+++|++|+++ |++|++++|+.+++++..+.+. +.
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALER-GDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4689999999999999999999998 8999999998766544332211 10
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
.......+++++.+++|+.+++.+++.+++.|++ .++||++||.++......
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~--------------- 145 (275)
T PRK08263 81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPM--------------- 145 (275)
T ss_pred EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCC---------------
Confidence 0112244789999999999999999999999865 379999999877432211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
...|++||++++++++.++.++... ||+||+|+||++.|++....
T Consensus 146 ---------------------~~~Y~~sKaa~~~~~~~la~e~~~~----gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~ 200 (275)
T PRK08263 146 ---------------------SGIYHASKWALEGMSEALAQEVAEF----GIKVTLVEPGGYSTDWAGTSAKRATPLDAY 200 (275)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEecCCccCCccccccccCCCchhh
Confidence 1689999999999999999999877 99999999999999987311
Q ss_pred --------------CC-CCHHhHHHHHHHHHhh
Q psy8786 372 --------------GN-VNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 --------------~~-~~peevA~~~~~L~s~ 389 (484)
.. .+|+|+++.++++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~ 233 (275)
T PRK08263 201 DTLREELAEQWSERSVDGDPEAAAEALLKLVDA 233 (275)
T ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcC
Confidence 11 5678888887777653
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=179.54 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=139.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHHhc-------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~~~------------------------------- 234 (484)
|+++||||++|||+++|+.|+++ |++|++++|+.+ ..++..+.++..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA-GFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999 889999988643 322222222110
Q ss_pred -------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCcc-ccccchHHH
Q psy8786 235 -------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 235 -------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
+. .....+.++..+++|+.+++.+++++.+.|++ .++||++||..+. +.+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----- 156 (256)
T PRK12745 82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPN----- 156 (256)
T ss_pred CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCC-----
Confidence 10 01234788999999999999999999998864 2469999998873 2222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||++++++++.++.++.++ ||+|++|+||.+.|++...
T Consensus 157 --------------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~----gi~v~~i~pg~v~t~~~~~ 200 (256)
T PRK12745 157 --------------------------------RGEYCISKAGLSMAAQLFAARLAEE----GIGVYEVRPGLIKTDMTAP 200 (256)
T ss_pred --------------------------------CcccHHHHHHHHHHHHHHHHHHHHh----CCEEEEEecCCCcCccccc
Confidence 2689999999999999999999877 9999999999999987543
Q ss_pred C----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 M----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+++|+++.+.+++++...+++|+.+ .++++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~--~i~gg~~ 252 (256)
T PRK12745 201 VTAKYDALIAKGLVPMPRWGEPEDVARAVAALASGDLPYSTGQAI--HVDGGLS 252 (256)
T ss_pred cchhHHhhhhhcCCCcCCCcCHHHHHHHHHHHhCCcccccCCCEE--EECCCee
Confidence 2 1247999999999999988889999987 5566654
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-22 Score=177.48 Aligned_cols=180 Identities=21% Similarity=0.219 Sum_probs=147.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
.+|-+++||||.+|+|++.|++|+++ |+.|++.|....+.++..+++...
T Consensus 7 ~kglvalvtggasglg~ataerlakq-gasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld 85 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQ-GASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLD 85 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhc-CceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence 47889999999999999999999999 899999998777777766666543
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCccccccchH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGHLSQITNL 288 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~~~~~~~~ 288 (484)
.......+++.+++++|+.|+|++++.....|.+ .|.|||+.|+++.....
T Consensus 86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~--- 162 (260)
T KOG1199|consen 86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT--- 162 (260)
T ss_pred eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc---
Confidence 1112234889999999999999999998888843 27899999998853332
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
++++|++||+|+.+||.-+|+.++.. |||+|.|+||.++|||.
T Consensus 163 ---------------------------------gqaaysaskgaivgmtlpiardla~~----gir~~tiapglf~tpll 205 (260)
T KOG1199|consen 163 ---------------------------------GQAAYSASKGAIVGMTLPIARDLAGD----GIRFNTIAPGLFDTPLL 205 (260)
T ss_pred ---------------------------------chhhhhcccCceEeeechhhhhcccC----ceEEEeecccccCChhh
Confidence 23899999999999999999999887 99999999999999998
Q ss_pred cCCCC----------------CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 369 SFMGN----------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 369 ~~~~~----------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...++ +.|.|.+..+-.+. +..|++|++| ..||...
T Consensus 206 sslpekv~~fla~~ipfpsrlg~p~eyahlvqaii--enp~lngevi--r~dgalr 257 (260)
T KOG1199|consen 206 SSLPEKVKSFLAQLIPFPSRLGHPHEYAHLVQAII--ENPYLNGEVI--RFDGALR 257 (260)
T ss_pred hhhhHHHHHHHHHhCCCchhcCChHHHHHHHHHHH--hCcccCCeEE--Eecceec
Confidence 76643 78888888776666 5668999988 5666553
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=177.62 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=130.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+++||||++|||+++|++|+++ |++|++++|++++.++..+++...
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA-GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 68999999999999999999998 899999999987665544433210
Q ss_pred ----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 ----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
.......++++..+++|+.+++.+++++.+.|++ .++||++||..+......
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------------- 144 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRAS---------------- 144 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCC----------------
Confidence 0112234677889999999999999999999865 489999999876322111
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----CCCHH
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-----NVNIF 377 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-----~~~pe 377 (484)
...|+++|+++.+++++++.|+.+. ||+|++|+||+++|++..... ..+|+
T Consensus 145 --------------------~~~Y~~sK~a~~~~~~~l~~el~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~ 200 (243)
T PRK07102 145 --------------------NYVYGSAKAALTAFLSGLRNRLFKS----GVHVLTVKPGFVRTPMTAGLKLPGPLTAQPE 200 (243)
T ss_pred --------------------CcccHHHHHHHHHHHHHHHHHhhcc----CcEEEEEecCcccChhhhccCCCccccCCHH
Confidence 1679999999999999999998876 999999999999999865432 37899
Q ss_pred hHHHHHHHHHhh
Q psy8786 378 DDSSTFNAFERV 389 (484)
Q Consensus 378 evA~~~~~L~s~ 389 (484)
++++.+....+.
T Consensus 201 ~~a~~i~~~~~~ 212 (243)
T PRK07102 201 EVAKDIFRAIEK 212 (243)
T ss_pred HHHHHHHHHHhC
Confidence 999998887754
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=175.53 Aligned_cols=181 Identities=21% Similarity=0.273 Sum_probs=141.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~~~~~~l~~~--------------------------- 234 (484)
++++|+++||||++|||+++++.|+++ |++|+++.|+.+. .++..+++...
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQ-GANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999998 8999777776442 22222222110
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ......+.++..+++|+.+++.+.+++.+.+.+. +++|++||..+. +.+.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~--------- 151 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPG--------- 151 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCC---------
Confidence 0 0122346788999999999999999999988654 789999998663 2222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
...|+++|++++++++.++.++... ||++++|+||+++|++.....
T Consensus 152 ----------------------------~~~y~~sk~a~~~~~~~~a~~~~~~----~i~~~~v~pg~~~~~~~~~~~~~ 199 (248)
T PRK05557 152 ----------------------------QANYAASKAGVIGFTKSLARELASR----GITVNAVAPGFIETDMTDALPED 199 (248)
T ss_pred ----------------------------CchhHHHHHHHHHHHHHHHHHhhhh----CeEEEEEecCccCCccccccChH
Confidence 1689999999999999999998776 999999999999998765321
Q ss_pred -------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++|+++.+.+++++.+.+++|+.+ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~i~~~~ 245 (248)
T PRK05557 200 VKEAILAQIPLGRLGQPEEIASAVAFLASDEAAYITGQTL--HVNGGM 245 (248)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccccEE--EecCCc
Confidence 168999999999999887888999988 456654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-20 Score=176.67 Aligned_cols=181 Identities=20% Similarity=0.233 Sum_probs=138.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC----chhHHHHHHHHHh-------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD----KKKGAEAVQVLKD------------------------- 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~----~~~~~~~~~~l~~------------------------- 233 (484)
++++|+++||||++|||+++|+.|+++ |++|++++|. .+..++..+++..
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAAD-GADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 8888886552 2222222222210
Q ss_pred --c-----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHH-HhhhcC--CEEEEEeCCCccccccchHHHH
Q psy8786 234 --R-----------A------STVPFAIQAEKTILTNYLGLVRTCVFLF-PLLRRH--ARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 234 --~-----------~------~~~~~~~~~~~~~~vN~~g~~~l~~all-p~l~~~--grIV~iSS~ag~~~~~~~~~~~ 291 (484)
. + ......++++..+++|+.+++.+++++. +.+++. +++|++||..+......
T Consensus 82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----- 156 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRG----- 156 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCC-----
Confidence 0 0 0122347789999999999999999999 665543 78999999877422111
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|+.+|++++.+++.++.++.+. ||++++|+||+++|++....
T Consensus 157 -------------------------------~~~y~~sK~a~~~~~~~l~~~~~~~----~i~~~~i~pg~v~t~~~~~~ 201 (249)
T PRK12827 157 -------------------------------QVNYAASKAGLIGLTKTLANELAPR----GITVNAVAPGAINTPMADNA 201 (249)
T ss_pred -------------------------------CchhHHHHHHHHHHHHHHHHHhhhh----CcEEEEEEECCcCCCccccc
Confidence 2689999999999999999998776 99999999999999986432
Q ss_pred C-------------CCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 372 G-------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 372 ~-------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
. ..+++|+++.+++++++...+++|+.+ .++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~--~~~~g 247 (249)
T PRK12827 202 APTEHLLNPVPVQRLGEPDEVAALVAFLVSDAASYVTGQVI--PVDGG 247 (249)
T ss_pred chHHHHHhhCCCcCCcCHHHHHHHHHHHcCcccCCccCcEE--EeCCC
Confidence 1 148999999999999888889999987 44544
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-20 Score=181.64 Aligned_cols=149 Identities=23% Similarity=0.231 Sum_probs=118.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|++++|+.+.+++..+++...
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAAL-GMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999 899999999876665554443210
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--------CEEEEEeCCCccccccchHHH
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--------ARVVNLSSSAGHLSQITNLEL 290 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--------grIV~iSS~ag~~~~~~~~~~ 290 (484)
+ ......++++..+++|+.|++.++++++|.|.+. ++||++||.++......
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~---- 157 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPA---- 157 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCC----
Confidence 0 1123447889999999999999999999988542 68999999887432211
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+++++++++++.++... ..+||+|+|+||+|.|++...
T Consensus 158 --------------------------------~~~Y~~sK~a~~~~~~~l~~e~~~~--~~~irv~~v~pg~i~t~~~~~ 203 (287)
T PRK06194 158 --------------------------------MGIYNVSKHAVVSLTETLYQDLSLV--TDQVGASVLCPYFVPTGIWQS 203 (287)
T ss_pred --------------------------------CcchHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEEEeCcccCccccc
Confidence 2689999999999999999998743 237999999999999998653
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=177.57 Aligned_cols=172 Identities=22% Similarity=0.242 Sum_probs=133.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
++++||||++|||.++|+.|+++ |++|++++|+++++++..+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 36999999999999999999998 899999999877655433322110
Q ss_pred ---CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 ---AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ---~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+. ...+.++++.++++|+.|++.+++++++.+++ .++||++||..+.....
T Consensus 80 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------------- 142 (248)
T PRK10538 80 NNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA----------------- 142 (248)
T ss_pred ECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCC-----------------
Confidence 10 11245788999999999999999999999865 37999999987632111
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc-CCCccC-----------
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA-TNMSSF----------- 370 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~-T~m~~~----------- 370 (484)
+...|++||++++++++.++.++.+. ||+||+|+||++. |++...
T Consensus 143 -------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~----~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~ 199 (248)
T PRK10538 143 -------------------GGNVYGATKAFVRQFSLNLRTDLHGT----AVRVTDIEPGLVGGTEFSNVRFKGDDGKAEK 199 (248)
T ss_pred -------------------CCchhHHHHHHHHHHHHHHHHHhcCC----CcEEEEEeCCeecccccchhhccCcHHHHHh
Confidence 12689999999999999999998876 9999999999998 433210
Q ss_pred ----CCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 371 ----MGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 371 ----~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
....+|+|+|+.++|+++....+.+++..
T Consensus 200 ~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~ 232 (248)
T PRK10538 200 TYQNTVALTPEDVSEAVWWVATLPAHVNINTLE 232 (248)
T ss_pred hccccCCCCHHHHHHHHHHHhcCCCcccchhhc
Confidence 12368999999999999877777666654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=180.93 Aligned_cols=178 Identities=14% Similarity=0.136 Sum_probs=132.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~~~---------------------------- 234 (484)
+++|+++||||++|||++++++|+++ |++|++++|+.+ ..++..++++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGA-GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 67899999999999999999999998 899999988753 333333222210
Q ss_pred ----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 ----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+........++..+++|+.+++.+++++.+.|++.++||++||..+...+...
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~----------------- 145 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTVK----------------- 145 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcccc-----------------
Confidence 00001112345667899999999999999998777899999996542111100
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------- 371 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------- 371 (484)
... ....|++||++++.+++.++.+++.. ||+||+|+||.+.|++....
T Consensus 146 ------------~~~--~~~~Y~~sK~a~e~~~~~l~~~~~~~----~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~ 207 (248)
T PRK07806 146 ------------TMP--EYEPVARSKRAGEDALRALRPELAEK----GIGFVVVSGDMIEGTVTATLLNRLNPGAIEARR 207 (248)
T ss_pred ------------CCc--cccHHHHHHHHHHHHHHHHHHHhhcc----CeEEEEeCCccccCchhhhhhccCCHHHHHHHH
Confidence 000 12689999999999999999999877 99999999999998764311
Q ss_pred ----CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ----GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+|+|+|+.+.++++ +.+++|+.+
T Consensus 208 ~~~~~~~~~~dva~~~~~l~~--~~~~~g~~~ 237 (248)
T PRK07806 208 EAAGKLYTVSEFAAEVARAVT--APVPSGHIE 237 (248)
T ss_pred hhhcccCCHHHHHHHHHHHhh--ccccCccEE
Confidence 22689999999999996 568899987
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-20 Score=178.71 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=123.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHH--------------HHHHhc-----------C
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAV--------------QVLKDR-----------A 235 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~--------------~~l~~~-----------~ 235 (484)
.+++||+++||||++|||+++|++|+++ |++|++++|+. +..+... +++... +
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAK-GAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 4578999999999999999999999999 89999999876 2211100 001110 1
Q ss_pred ---CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CC-EEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 236 ---STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HA-RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 236 ---~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~g-rIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
....+.++++..+++|+.|++.++++++|.|++ ++ .+++.+|.++...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~~~---------------------- 146 (245)
T PRK12367 89 INPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQPAL---------------------- 146 (245)
T ss_pred cCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCCCC----------------------
Confidence 112346889999999999999999999999964 24 344445554432211
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCCCHHhHHHHHHHHH
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFE 387 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~peevA~~~~~L~ 387 (484)
...|++||+|+..+. ++++++..++.+.||+|++++||+++|++... ...+|+++|+.+++.+
T Consensus 147 ---------------~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~~~-~~~~~~~vA~~i~~~~ 209 (245)
T PRK12367 147 ---------------SPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSELNPI-GIMSADFVAKQILDQA 209 (245)
T ss_pred ---------------CchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccccCcc-CCCCHHHHHHHHHHHH
Confidence 167999999997765 77777765555669999999999999998543 3478999999998877
Q ss_pred hh
Q psy8786 388 RV 389 (484)
Q Consensus 388 s~ 389 (484)
+.
T Consensus 210 ~~ 211 (245)
T PRK12367 210 NL 211 (245)
T ss_pred hc
Confidence 43
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=179.88 Aligned_cols=160 Identities=23% Similarity=0.341 Sum_probs=126.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+++||||++|||++++++|+++ |++|++++|+.+++++..+++...
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE-GWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999999999998 899999999887766555444321
Q ss_pred ------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 ------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 ------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
.......++++..+++|+.+++.+++.++|.|++ .++||++||..+......
T Consensus 80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~-------------- 145 (270)
T PRK05650 80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPA-------------- 145 (270)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCC--------------
Confidence 0112234788999999999999999999999865 379999999887422111
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------- 372 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------- 372 (484)
...|++||+++++++++++.|+... ||+|++|+||+++|++.....
T Consensus 146 ----------------------~~~Y~~sKaa~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 199 (270)
T PRK05650 146 ----------------------MSSYNVAKAGVVALSETLLVELADD----EIGVHVVCPSFFQTNLLDSFRGPNPAMKA 199 (270)
T ss_pred ----------------------chHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCccccCcccccccCchhHHH
Confidence 2789999999999999999999876 999999999999999865432
Q ss_pred ---------CCCHHhHHHHHHHHH
Q psy8786 373 ---------NVNIFDDSSTFNAFE 387 (484)
Q Consensus 373 ---------~~~peevA~~~~~L~ 387 (484)
..+++++|+.++..+
T Consensus 200 ~~~~~~~~~~~~~~~vA~~i~~~l 223 (270)
T PRK05650 200 QVGKLLEKSPITAADIADYIYQQV 223 (270)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHH
Confidence 146666666665554
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=174.72 Aligned_cols=168 Identities=23% Similarity=0.249 Sum_probs=133.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++++|+++||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 3 QSLQGKNALITGAGRGIGRAVAIALAKE-GVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred ccCCCCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4467899999999999999999999998 889999999877665544433211
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.+++.+++++.+.+.+ .+++|++||..+......
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~--------- 152 (239)
T PRK07666 82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAV--------- 152 (239)
T ss_pred cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCC---------
Confidence 0 001234778899999999999999999998865 378999999877422211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|+.||+++..+++.++.|+.+. ||++|+|+||.+.|++....
T Consensus 153 ---------------------------~~~Y~~sK~a~~~~~~~~a~e~~~~----gi~v~~v~pg~v~t~~~~~~~~~~ 201 (239)
T PRK07666 153 ---------------------------TSAYSASKFGVLGLTESLMQEVRKH----NIRVTALTPSTVATDMAVDLGLTD 201 (239)
T ss_pred ---------------------------CcchHHHHHHHHHHHHHHHHHhhcc----CcEEEEEecCcccCcchhhccccc
Confidence 2679999999999999999999876 99999999999999975432
Q ss_pred ----CCCCHHhHHHHHHHHHhhh
Q psy8786 372 ----GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s~~ 390 (484)
...+++|+|+.+..+++..
T Consensus 202 ~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 202 GNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC
Confidence 1268999999998887543
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=177.03 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=134.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~---------------------------- 234 (484)
..+|++|||||++|||+++|++|+++ |++|+++++. .+..+++.+++...
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAH-GFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999998 8888876653 34443333332110
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~ 295 (484)
+ ......+.++.++++|+.+++.+++++.+.+++ .++||+++|..+.. .+.
T Consensus 86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~---------- 155 (258)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPD---------- 155 (258)
T ss_pred CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCC----------
Confidence 0 012234788999999999999999999998865 47999998865532 111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|++++++.++.++.. +|+||+|+||++.|+.....
T Consensus 156 ---------------------------~~~Y~~sK~a~~~~~~~la~~~~~-----~i~v~~i~PG~v~t~~~~~~~~~~ 203 (258)
T PRK09134 156 ---------------------------FLSYTLSKAALWTATRTLAQALAP-----RIRVNAIGPGPTLPSGRQSPEDFA 203 (258)
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHhcC-----CcEEEEeecccccCCcccChHHHH
Confidence 157999999999999999998753 49999999999988643211
Q ss_pred ---------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ---------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+++|+|+.++++++ ..+++|+.+ .++++...
T Consensus 204 ~~~~~~~~~~~~~~~d~a~~~~~~~~--~~~~~g~~~--~i~gg~~~ 246 (258)
T PRK09134 204 RQHAATPLGRGSTPEEIAAAVRYLLD--APSVTGQMI--AVDGGQHL 246 (258)
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhc--CCCcCCCEE--EECCCeec
Confidence 12679999999999986 457899987 56665533
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-20 Score=175.83 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=132.6
Q ss_pred EEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--c-------------------------------C-
Q psy8786 190 VVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--R-------------------------------A- 235 (484)
Q Consensus 190 LITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--~-------------------------------~- 235 (484)
|||||++|||+++|++|+++ |++|++++|+.+++++..++++. . .
T Consensus 1 lItGas~~iG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE-GARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 59999999999999999998 89999999997766655544421 0 0
Q ss_pred -----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 236 -----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 236 -----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
......++++.++++|+.+++.+++ .+.+++.++||+++|.++......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~~~g~iv~~ss~~~~~~~~~------------------------ 133 (230)
T PRK07041 80 TPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIAPGGSLTFVSGFAAVRPSAS------------------------ 133 (230)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhcCCeEEEEECchhhcCCCCc------------------------
Confidence 0112347899999999999999999 455666799999999887422111
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------------------
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------------------ 372 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------------------ 372 (484)
...|++||+++++++++++.|+. +||||+|+||+++|++.....
T Consensus 134 ------------~~~Y~~sK~a~~~~~~~la~e~~------~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (230)
T PRK07041 134 ------------GVLQGAINAALEALARGLALELA------PVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPAR 195 (230)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhh------CceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCCC
Confidence 27899999999999999999884 499999999999998754211
Q ss_pred -CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.+.+|+++ .+++|+.+ .++|+.
T Consensus 196 ~~~~~~dva~~~~~l~~~--~~~~G~~~--~v~gg~ 227 (230)
T PRK07041 196 RVGQPEDVANAILFLAAN--GFTTGSTV--LVDGGH 227 (230)
T ss_pred CCcCHHHHHHHHHHHhcC--CCcCCcEE--EeCCCe
Confidence 14699999999999974 58899988 466655
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=174.95 Aligned_cols=180 Identities=21% Similarity=0.267 Sum_probs=135.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHH---------------------------HHh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQV---------------------------LKD 233 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~---------------------------l~~ 233 (484)
+++++|++|||||++|||++++++|+++ |++|++..|+ .+...+..+. +.+
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKE-GSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999998 8888776653 2222222111 111
Q ss_pred c-----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 234 R-----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 234 ~-----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
. +. .....+.++..+++|+.+.+.+++++.+.+++.++||++||.++.....
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 149 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAY----------- 149 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCC-----------
Confidence 0 00 1123466789999999999999999999998889999999988742211
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
+...|++||++++++++.+++++++ +|+++.|+||+++|++....
T Consensus 150 -------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~-----~i~v~~v~Pg~i~t~~~~~~~~~~~ 199 (252)
T PRK06077 150 -------------------------GLSIYGAMKAAVINLTKYLALELAP-----KIRVNAIAPGFVKTKLGESLFKVLG 199 (252)
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHHHHHhc-----CCEEEEEeeCCccChHHHhhhhccc
Confidence 1278999999999999999998753 79999999999999975321
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++++++. ..++|+.+ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~--~~~~g~~~--~i~~g~ 245 (252)
T PRK06077 200 MSEKEFAEKFTLMGKILDPEEVAEFVAAILKI--ESITGQVF--VLDSGE 245 (252)
T ss_pred ccHHHHHHhcCcCCCCCCHHHHHHHHHHHhCc--cccCCCeE--EecCCe
Confidence 116899999999998853 35678776 455544
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=174.29 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=134.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEE-EecCchhHHHHHHHHHhc-------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYL-TARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl-~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
|+++||||++|||++++++|+++ |++|++ ..|+.++.++...++...
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQE-GYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 68999999999999999999998 888876 456655544443332210
Q ss_pred -------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ......++++..+++|+.+++.+++++++.+.+ .+++|++||..+. ..+..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~-------- 152 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGE-------- 152 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCc--------
Confidence 0 012234788899999999999999999998854 3789999998763 22211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|+++|++++++++.++.++.+. ||++++|+||.+.|++....
T Consensus 153 ----------------------------~~~Y~~sK~~~~~~~~~l~~~~~~~----~i~v~~i~pg~~~~~~~~~~~~~ 200 (247)
T PRK09730 153 ----------------------------YVDYAASKGAIDTLTTGLSLEVAAQ----GIRVNCVRPGFIYTEMHASGGEP 200 (247)
T ss_pred ----------------------------ccchHhHHHHHHHHHHHHHHHHHHh----CeEEEEEEeCCCcCcccccCCCH
Confidence 1479999999999999999998877 99999999999999975321
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+++|+|+.+.+++++...+++|+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~ 241 (247)
T PRK09730 201 GRVDRVKSNIPMQRGGQPEEVAQAIVWLLSDKASYVTGSFI 241 (247)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHhhcChhhcCccCcEE
Confidence 1148999999999999988888999877
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=175.93 Aligned_cols=145 Identities=27% Similarity=0.362 Sum_probs=116.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH-------------------HHHHHHHHhc-----------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG-------------------AEAVQVLKDR----------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~-------------------~~~~~~l~~~----------- 234 (484)
++|+++||||++|||+++|++|+++ |++|++++|+.++. +++.+.+.+.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARA-GYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4689999999999999999999999 89999999974332 2223332211
Q ss_pred ------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccccc
Q psy8786 235 ------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 ------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
.......++++.++++|+.|++.+++++++.|++ .++||++||..+......
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------------------- 141 (270)
T PRK06179 82 GVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPY-------------------- 141 (270)
T ss_pred CCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCC--------------------
Confidence 0112345789999999999999999999999865 379999999887422111
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||++++++++.++.|+.+. ||+|++|+||+++|++...
T Consensus 142 ----------------~~~Y~~sK~a~~~~~~~l~~el~~~----gi~v~~v~pg~~~t~~~~~ 185 (270)
T PRK06179 142 ----------------MALYAASKHAVEGYSESLDHEVRQF----GIRVSLVEPAYTKTNFDAN 185 (270)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEeCCCcccccccc
Confidence 1689999999999999999999877 9999999999999998654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=173.52 Aligned_cols=183 Identities=25% Similarity=0.247 Sum_probs=143.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+.+|+++||||+++||++++++|+++ |++|++++|+.++.++..+++...
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999 899999999866554444333211
Q ss_pred ---------CC--C----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------AS--T----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~~--~----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.. . ....++++..+++|+.+++.+++++++.+++ .+++|++||..+...+..
T Consensus 83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~----------- 151 (251)
T PRK12826 83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYP----------- 151 (251)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCC-----------
Confidence 00 0 2234678889999999999999999998854 378999999876411111
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
+...|+++|++++++++.++.++... |++++.|+||.+.|+......
T Consensus 152 ------------------------~~~~y~~sK~a~~~~~~~~~~~~~~~----~i~~~~i~pg~~~~~~~~~~~~~~~~ 203 (251)
T PRK12826 152 ------------------------GLAHYAASKAGLVGFTRALALELAAR----NITVNSVHPGGVDTPMAGNLGDAQWA 203 (251)
T ss_pred ------------------------CccHHHHHHHHHHHHHHHHHHHHHHc----CeEEEEEeeCCCCcchhhhcCchHHH
Confidence 12689999999999999999998876 999999999999998653221
Q ss_pred -----------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+++|+++.+.++++....+++|+.+ .++++..
T Consensus 204 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~--~~~~g~~ 248 (251)
T PRK12826 204 EAIAAAIPLGRLGEPEDIAAAVLFLASDEARYITGQTL--PVDGGAT 248 (251)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCcEE--EECCCcc
Confidence 167899999999999888888999988 4455543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=177.96 Aligned_cols=142 Identities=25% Similarity=0.331 Sum_probs=115.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH---------------------HHHHHhc-----------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA---------------------VQVLKDR----------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~---------------------~~~l~~~----------- 234 (484)
|++|||||++|||+++|+.|+++ |++|++++|+.++.++. ++.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAA-GYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 78999999999999999999998 89999999986544322 1122111
Q ss_pred C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC-CEEEEEeCCCcc-ccccchHHHHHHHhhcccccccccc
Q psy8786 235 A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH-ARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 ~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~-grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
+ ......++++..+++|+.|++.++++++|.|+++ ++||++||..+. ..+.
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------------------- 139 (274)
T PRK05693 81 GYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPF--------------------- 139 (274)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCC---------------------
Confidence 0 1122457899999999999999999999998765 899999998873 2222
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||++++.++++++.|++++ ||+|++|+||+|+|++...
T Consensus 140 ----------------~~~Y~~sK~al~~~~~~l~~e~~~~----gi~v~~v~pg~v~t~~~~~ 183 (274)
T PRK05693 140 ----------------AGAYCASKAAVHALSDALRLELAPF----GVQVMEVQPGAIASQFASN 183 (274)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEecCccccccccc
Confidence 1689999999999999999999877 9999999999999998764
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=172.82 Aligned_cols=162 Identities=21% Similarity=0.264 Sum_probs=128.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|+++||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAK-GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999 899999999987666554433210
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
+ ......+.++.++++|+.+++.+++++.+.+++ .++||++||..+. +.+.
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 149 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPG----------- 149 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCC-----------
Confidence 0 011224667889999999999999999998865 4799999998773 2221
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC---
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN--- 373 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~--- 373 (484)
+...|+.||++++++++.++.++... ||+|++|+||+++|++......
T Consensus 150 -------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~----~i~v~~v~pg~v~t~~~~~~~~~~~ 200 (248)
T PRK08251 150 -------------------------VKAAYAASKAGVASLGEGLRAELAKT----PIKVSTIEPGYIRSEMNAKAKSTPF 200 (248)
T ss_pred -------------------------CcccHHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCcCcchhhhccccCCc
Confidence 12689999999999999999998765 8999999999999998764332
Q ss_pred -CCHHhHHHHHHHHHh
Q psy8786 374 -VNIFDDSSTFNAFER 388 (484)
Q Consensus 374 -~~peevA~~~~~L~s 388 (484)
.+++++++.+.....
T Consensus 201 ~~~~~~~a~~i~~~~~ 216 (248)
T PRK08251 201 MVDTETGVKALVKAIE 216 (248)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 678999998876653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=198.73 Aligned_cols=166 Identities=22% Similarity=0.261 Sum_probs=134.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||+++||||++|||+++|++|+++ |++|++++|+++.+++..+++...
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEA-GATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999 899999999988766655544211
Q ss_pred -----------CCC------Cc--cHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -----------AST------VP--FAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -----------~~~------~~--~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+.. .. ..++++.++++|+.|++.++++++|.|++. ++||++||.++......
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 518 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPR------- 518 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCC-------
Confidence 100 01 136788999999999999999999998653 79999999887432111
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+++++|+++++.|++++ ||+||+|+||+|+|+|....
T Consensus 519 -----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~v~pg~v~T~~~~~~~~ 565 (657)
T PRK07201 519 -----------------------------FSAYVASKAALDAFSDVAASETLSD----GITFTTIHMPLVRTPMIAPTKR 565 (657)
T ss_pred -----------------------------cchHHHHHHHHHHHHHHHHHHHHhh----CCcEEEEECCcCcccccCcccc
Confidence 1689999999999999999999887 99999999999999987542
Q ss_pred ----CCCCHHhHHHHHHHHHh
Q psy8786 372 ----GNVNIFDDSSTFNAFER 388 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s 388 (484)
...+|+++|+.++..+.
T Consensus 566 ~~~~~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 566 YNNVPTISPEEAADMVVRAIV 586 (657)
T ss_pred ccCCCCCCHHHHHHHHHHHHH
Confidence 23689999999887654
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=198.95 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=148.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--c--------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--R-------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--~-------------------------- 234 (484)
.+.||+++||||++|||+++|+.|+++ |++|++++|+.+.+++..+++.. .
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~-Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAE-GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999998 88999999998766555444322 0
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+ ......++|+..+++|+.|++.+++++.+.|++ +++||++||..+. ..+.
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~---------- 567 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPN---------- 567 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCC----------
Confidence 0 112245789999999999999999999999976 4899999998773 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc--cCCCccCC--
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV--ATNMSSFM-- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V--~T~m~~~~-- 371 (484)
...|++||++++++++.++.++++. ||+||+|+||.| .|+++...
T Consensus 568 ---------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gIrvn~v~Pg~v~~~t~~~~~~~~ 616 (681)
T PRK08324 568 ---------------------------FGAYGAAKAAELHLVRQLALELGPD----GIRVNGVNPDAVVRGSGIWTGEWI 616 (681)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeCceeecCCccccchhh
Confidence 2789999999999999999998876 999999999999 88764321
Q ss_pred -------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
....++|+|+++.+++++....++|+.+ .++|+...
T Consensus 617 ~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i--~vdgG~~~ 677 (681)
T PRK08324 617 EARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAII--TVDGGNAA 677 (681)
T ss_pred hhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEE--EECCCchh
Confidence 1267899999999999877888999988 56776543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=175.56 Aligned_cols=164 Identities=19% Similarity=0.238 Sum_probs=127.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
++|++|||||++|||+++|+.|+++ |++|++++|+.+..++..+++...
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999 899999999877655443332210
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+ ......++++..+++|+.+++.+++.+++.|++. ++||++||..+.....
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~------------ 148 (280)
T PRK06914 81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFP------------ 148 (280)
T ss_pred CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCC------------
Confidence 0 0112336778889999999999999999998653 7999999987632211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
+...|++||+++++++++++.++.++ ||+|++|+||.++|++....
T Consensus 149 ------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~----~i~v~~v~pg~~~t~~~~~~~~~~~~ 200 (280)
T PRK06914 149 ------------------------GLSPYVSSKYALEGFSESLRLELKPF----GIDVALIEPGSYNTNIWEVGKQLAEN 200 (280)
T ss_pred ------------------------CCchhHHhHHHHHHHHHHHHHHhhhh----CCEEEEEecCCcccchhhcccccccc
Confidence 12689999999999999999998877 99999999999999975421
Q ss_pred ------------------------CCCCHHhHHHHHHHHHhh
Q psy8786 372 ------------------------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 ------------------------~~~~peevA~~~~~L~s~ 389 (484)
...+|+|+|+.+.++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~ 242 (280)
T PRK06914 201 QSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVEIAES 242 (280)
T ss_pred ccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHcC
Confidence 014778888888877754
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=174.25 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=128.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH-------------------------h------c-
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-------------------------D------R- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~-------------------------~------~- 234 (484)
|++|||||++|||++++++|+++ |++|++++|+.+.+++..+.+. . +
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-GWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 78999999999999999999999 8999999998776654433321 0 0
Q ss_pred -----C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcccc
Q psy8786 235 -----A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -----~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~ 300 (484)
+ ......++++.++++|+.+++.+++++.+.|++ .++||++||..+. +.+.
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------------- 145 (260)
T PRK08267 81 LFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPG--------------- 145 (260)
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCC---------------
Confidence 0 112234788999999999999999999999865 4899999998773 3222
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC----C-----
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----M----- 371 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----~----- 371 (484)
...|+.||+++++++++++.++.++ ||+||+|+||+++|++... .
T Consensus 146 ----------------------~~~Y~~sKaa~~~~~~~l~~~~~~~----~i~v~~i~pg~~~t~~~~~~~~~~~~~~~ 199 (260)
T PRK08267 146 ----------------------LAVYSATKFAVRGLTEALDLEWRRH----GIRVADVMPLFVDTAMLDGTSNEVDAGST 199 (260)
T ss_pred ----------------------chhhHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCCcCCcccccccchhhhhhH
Confidence 1689999999999999999998876 9999999999999998653 1
Q ss_pred ----CCCCHHhHHHHHHHHHh
Q psy8786 372 ----GNVNIFDDSSTFNAFER 388 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s 388 (484)
...+|+++++.+..+..
T Consensus 200 ~~~~~~~~~~~va~~~~~~~~ 220 (260)
T PRK08267 200 KRLGVRLTPEDVAEAVWAAVQ 220 (260)
T ss_pred hhccCCCCHHHHHHHHHHHHh
Confidence 12678899998887773
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=176.16 Aligned_cols=146 Identities=23% Similarity=0.332 Sum_probs=123.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++.+|.|+|||+.+|+|+.+|++|.++ |..|++.+.+++.+++...+....
T Consensus 25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~-Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~ 103 (322)
T KOG1610|consen 25 DSLSDKAVLITGCDSGFGRLLAKKLDKK-GFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLG 103 (322)
T ss_pred cccCCcEEEEecCCcHHHHHHHHHHHhc-CCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcc
Confidence 3568899999999999999999999999 899998887777666555444111
Q ss_pred -----------C---CCC----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------A---STV----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~---~~~----~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ... ...++++.++++|++|++.++++++|.+|+ .|||||++|+.|. ..|..
T Consensus 104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p~~-------- 175 (322)
T KOG1610|consen 104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALPAL-------- 175 (322)
T ss_pred cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCccc--------
Confidence 1 111 234899999999999999999999999987 5999999999994 44343
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
.+|++||+|++.|+.+|++|+.+. ||.|..|.||..+|++..
T Consensus 176 -----------------------------g~Y~~SK~aVeaf~D~lR~EL~~f----GV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 176 -----------------------------GPYCVSKFAVEAFSDSLRRELRPF----GVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred -----------------------------ccchhhHHHHHHHHHHHHHHHHhc----CcEEEEeccCccccccCC
Confidence 789999999999999999999988 999999999999999986
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=169.66 Aligned_cols=182 Identities=19% Similarity=0.260 Sum_probs=142.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|.+|++|||||++|||+++++.|+++ |..|++++|+.++.+....++...
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAAD-GAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 456789999999999999999999998 889999999977655444333210
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
.......++++..+++|+.+.+.+++++.+.+++. ++||++||..+.....
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~----------- 149 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNP----------- 149 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCC-----------
Confidence 00122346788899999999999999999988653 6999999976632111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
+...|+.+|++++.+++++++++.+. ||++++|+||.+.|++....
T Consensus 150 -------------------------~~~~y~~sk~~~~~~~~~l~~~~~~~----~i~~~~i~pg~~~~~~~~~~~~~~~ 200 (246)
T PRK05653 150 -------------------------GQTNYSAAKAGVIGFTKALALELASR----GITVNAVAPGFIDTDMTEGLPEEVK 200 (246)
T ss_pred -------------------------CCcHhHhHHHHHHHHHHHHHHHHhhc----CeEEEEEEeCCcCCcchhhhhHHHH
Confidence 12689999999999999999988776 99999999999999876521
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+++|+++.+.++++.....++|+.+ .++|+.
T Consensus 201 ~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~--~~~gg~ 244 (246)
T PRK05653 201 AEILKEIPLGRLGQPEEVANAVAFLASDAASYITGQVI--PVNGGM 244 (246)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEE--EeCCCe
Confidence 1157799999999999888888899988 455543
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=170.82 Aligned_cols=163 Identities=23% Similarity=0.307 Sum_probs=125.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH----------------------HHHHHhc---------C
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA----------------------VQVLKDR---------A 235 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~----------------------~~~l~~~---------~ 235 (484)
|+++||||++|||+++|++|+++ |++|++++|+.++.++. .+.+... +
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag 80 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG 80 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence 78999999999999999999999 89999999986544321 1111110 0
Q ss_pred C--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC-CEEEEEeCCCccccccchHHHHHHHhhcccccccccc
Q psy8786 236 S--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH-ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 236 ~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~-grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
. .....++++..+++|+.+++.+++++++.++++ +++++++|..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~-------------------- 140 (225)
T PRK08177 81 ISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPD-------------------- 140 (225)
T ss_pred ccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCC--------------------
Confidence 0 112347888999999999999999999998765 88999998776321110
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCCCHHhHHHHHHHH
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAF 386 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~peevA~~~~~L 386 (484)
.. +...|+++|++++.+++.++.|++++ ||+||+|+||+++|++.....+.++++.+..++..
T Consensus 141 -----------~~--~~~~Y~~sK~a~~~~~~~l~~e~~~~----~i~v~~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~ 203 (225)
T PRK08177 141 -----------GG--EMPLYKASKAALNSMTRSFVAELGEP----TLTVLSMHPGWVKTDMGGDNAPLDVETSVKGLVEQ 203 (225)
T ss_pred -----------CC--CccchHHHHHHHHHHHHHHHHHhhcC----CeEEEEEcCCceecCCCCCCCCCCHHHHHHHHHHH
Confidence 00 12579999999999999999998876 99999999999999998766666777777665544
Q ss_pred H
Q psy8786 387 E 387 (484)
Q Consensus 387 ~ 387 (484)
.
T Consensus 204 ~ 204 (225)
T PRK08177 204 I 204 (225)
T ss_pred H
Confidence 4
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=167.20 Aligned_cols=172 Identities=25% Similarity=0.277 Sum_probs=135.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.+.+|+++||||+++||++++++|+++ |++|++++|+.++.++..+++...
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999998 889999999987766555544310
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
+ ......++++.++++|+.+++.+++++++.+++ .++||++||.++.....
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~------------- 148 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFA------------- 148 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCC-------------
Confidence 0 011234678899999999999999999998843 47899999987632211
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------ 372 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------ 372 (484)
+...|+++|+++.++++.++.++... |+++++|+||++.|++.....
T Consensus 149 -----------------------~~~~y~~sk~a~~~~~~~~~~~~~~~----gi~v~~v~pg~~~t~~~~~~~~~~~~~ 201 (237)
T PRK07326 149 -----------------------GGAAYNASKFGLVGFSEAAMLDLRQY----GIKVSTIMPGSVATHFNGHTPSEKDAW 201 (237)
T ss_pred -----------------------CCchHHHHHHHHHHHHHHHHHHhccc----CcEEEEEeeccccCcccccccchhhhc
Confidence 12679999999999999999998776 999999999999999765432
Q ss_pred CCCHHhHHHHHHHHHhhhccccc
Q psy8786 373 NVNIFDDSSTFNAFERVISHFLI 395 (484)
Q Consensus 373 ~~~peevA~~~~~L~s~~a~~it 395 (484)
..+++|+++.+.++.+.....+.
T Consensus 202 ~~~~~d~a~~~~~~l~~~~~~~~ 224 (237)
T PRK07326 202 KIQPEDIAQLVLDLLKMPPRTLP 224 (237)
T ss_pred cCCHHHHHHHHHHHHhCCccccc
Confidence 15789999999998866654433
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=169.70 Aligned_cols=163 Identities=23% Similarity=0.277 Sum_probs=129.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|++|||||++|||+++|+.|+++ |++|++++|+.++.++..+++...
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARA-GAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 478999999999999999999998 889999999977655544433211
Q ss_pred -------C------CCCc-cHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------A------STVP-FAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------~------~~~~-~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
. .... ..+.++..+++|+.+++.+++.+.+.+++ .++||++||..+.....
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------- 145 (263)
T PRK06181 80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVP-------------- 145 (263)
T ss_pred CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCC--------------
Confidence 0 0111 34667888999999999999999998854 58999999987743211
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
+...|++||++++++++.++.++... ||++|+|+||++.|++....
T Consensus 146 ----------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~----~i~~~~i~pg~v~t~~~~~~~~~~~~~~ 199 (263)
T PRK06181 146 ----------------------TRSGYAASKHALHGFFDSLRIELADD----GVAVTVVCPGFVATDIRKRALDGDGKPL 199 (263)
T ss_pred ----------------------CccHHHHHHHHHHHHHHHHHHHhhhc----CceEEEEecCccccCcchhhcccccccc
Confidence 12789999999999999999998876 99999999999999975321
Q ss_pred --------CCCCHHhHHHHHHHHHhh
Q psy8786 372 --------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 --------~~~~peevA~~~~~L~s~ 389 (484)
...+|+|+++.+.++++.
T Consensus 200 ~~~~~~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 200 GKSPMQESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred ccccccccCCCCHHHHHHHHHHHhhC
Confidence 126899999999998854
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=168.72 Aligned_cols=144 Identities=22% Similarity=0.308 Sum_probs=118.4
Q ss_pred CCCEEEEEcCC-chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----------------------HHHhc-------
Q psy8786 185 SERVAVVTGAN-KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ----------------------VLKDR------- 234 (484)
Q Consensus 185 ~gKvaLITGas-sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~----------------------~l~~~------- 234 (484)
..|.|+|||++ ||||.++|++|+++ |+.|+.+.|+.+...++.. ++++.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~-G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARN-GYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhC-CeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence 44788999877 79999999999999 9999999997665444332 22221
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhh-hcCCEEEEEeCCCc-cccccchHHHHHHHhhccccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLL-RRHARVVNLSSSAG-HLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l-~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~ 301 (484)
...+.+.+..+++|++|++|++.+++++...+ ++.|.|||+.|.++ .+.+..
T Consensus 85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~--------------- 149 (289)
T KOG1209|consen 85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFG--------------- 149 (289)
T ss_pred EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchh---------------
Confidence 22344568899999999999999999999655 56799999999998 444433
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
+.|++||+|++++++.|+.|+++. ||+|..+.||.|.|++...
T Consensus 150 ----------------------~iYsAsKAAihay~~tLrlEl~PF----gv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 150 ----------------------SIYSASKAAIHAYARTLRLELKPF----GVRVINAITGGVATDIADK 192 (289)
T ss_pred ----------------------hhhhHHHHHHHHhhhhcEEeeecc----ccEEEEecccceecccccC
Confidence 789999999999999999999988 9999999999999998765
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=171.02 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=127.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++.+|+++||||++|||+++|++|+++ |++|++++|+.+..++..+++...
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAA-GFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356789999999999999999999998 889999998876555443333210
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+ ......+.++..+++|+.+++.+++++++.+++ .++||++||..+......
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~---------- 155 (274)
T PRK07775 86 GEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPH---------- 155 (274)
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCC----------
Confidence 0 011134678889999999999999999998754 378999999876422111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
...|++||++++++++.+++++... ||+|++|+||+++|++....
T Consensus 156 --------------------------~~~Y~~sK~a~~~l~~~~~~~~~~~----gi~v~~v~pG~~~t~~~~~~~~~~~ 205 (274)
T PRK07775 156 --------------------------MGAYGAAKAGLEAMVTNLQMELEGT----GVRASIVHPGPTLTGMGWSLPAEVI 205 (274)
T ss_pred --------------------------cchHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeCCcccCcccccCChhhh
Confidence 1689999999999999999988765 99999999999999864321
Q ss_pred ----------------CCCCHHhHHHHHHHHHhh
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~ 389 (484)
....++|+|+.++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~ 239 (274)
T PRK07775 206 GPMLEDWAKWGQARHDYFLRASDLARAITFVAET 239 (274)
T ss_pred hHHHHHHHHhcccccccccCHHHHHHHHHHHhcC
Confidence 125788888888887754
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=174.05 Aligned_cols=160 Identities=22% Similarity=0.264 Sum_probs=134.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
.|+.++||||+.|||++.|++||++ |-+|++++|++++++.+.+|+.+.
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkr-G~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~ 126 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKR-GFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD 126 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence 4589999999999999999999999 999999999999999999998765
Q ss_pred ----------C--CC----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHHh
Q psy8786 235 ----------A--ST----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~--~~----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~~ 295 (484)
. .. +......+..+.+|+.+...+++.++|.|.+ .|-|||++|.++ .+.+..
T Consensus 127 VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~--------- 197 (312)
T KOG1014|consen 127 VGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLL--------- 197 (312)
T ss_pred eEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhH---------
Confidence 0 00 1112366788899999999999999999954 589999999999 444443
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC--
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-- 373 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-- 373 (484)
+.|++||+.+..|+++|+.|+..+ ||.|-+|.|+.|.|+|.....+
T Consensus 198 ----------------------------s~ysasK~~v~~~S~~L~~Ey~~~----gI~Vq~v~p~~VaTkm~~~~~~sl 245 (312)
T KOG1014|consen 198 ----------------------------SVYSASKAFVDFFSRCLQKEYESK----GIFVQSVIPYLVATKMAKYRKPSL 245 (312)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHhc----CeEEEEeehhheeccccccCCCCC
Confidence 899999999999999999999888 9999999999999999865543
Q ss_pred --CCHHhHHHHHHHH
Q psy8786 374 --VNIFDDSSTFNAF 386 (484)
Q Consensus 374 --~~peevA~~~~~L 386 (484)
.+|+.-+...+.-
T Consensus 246 ~~ps~~tfaksal~t 260 (312)
T KOG1014|consen 246 FVPSPETFAKSALNT 260 (312)
T ss_pred cCcCHHHHHHHHHhh
Confidence 5777777766543
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=162.76 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=150.4
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh-----------------------
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD----------------------- 233 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~----------------------- 233 (484)
..|+||++||+|-. +.|+..||+.|.++ |+.+..++.++. +.++..+++..
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~-GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~ 80 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQ-GAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKK 80 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHH
Confidence 45799999999965 79999999999999 999998887652 22223232221
Q ss_pred c---------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHH
Q psy8786 234 R---------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELK 291 (484)
Q Consensus 234 ~---------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~ 291 (484)
. ...+.+.+++...+++..++...+.+++.|.|.++|+|+.++-..+ ...|..
T Consensus 81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnY----- 155 (259)
T COG0623 81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNY----- 155 (259)
T ss_pred hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCC-----
Confidence 1 1223445889999999999999999999999999999999998777 555554
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...+.+|++++.-+|.||.+++++ |||||+|+-|+|+|=-....
T Consensus 156 --------------------------------NvMGvAKAaLEasvRyLA~dlG~~----gIRVNaISAGPIrTLAasgI 199 (259)
T COG0623 156 --------------------------------NVMGVAKAALEASVRYLAADLGKE----GIRVNAISAGPIRTLAASGI 199 (259)
T ss_pred --------------------------------chhHHHHHHHHHHHHHHHHHhCcc----CeEEeeecccchHHHHhhcc
Confidence 568999999999999999999988 99999999999998533322
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+..+.|||+++..||+|+.++-+||+++ .+|++|.+
T Consensus 200 ~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlSdLssgiTGei~--yVD~G~~i 252 (259)
T COG0623 200 GDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLSDLSSGITGEII--YVDSGYHI 252 (259)
T ss_pred ccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhcchhcccccceE--EEcCCcee
Confidence 1278999999999999999999999999 78888754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=169.04 Aligned_cols=177 Identities=23% Similarity=0.210 Sum_probs=136.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-------------------------c--
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-------------------------R-- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-------------------------~-- 234 (484)
.++++|+++||||++|||+++|++|+++ |++|++++|+.+..++..++... .
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEA-GARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3478899999999999999999999998 89999999987655443332210 0
Q ss_pred ---------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ---------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. .....++++.++++|+.+++.+++++.+.+++. ++|+++||.++......
T Consensus 86 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~--------- 156 (264)
T PRK12829 86 GLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPG--------- 156 (264)
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCC---------
Confidence 00 112347889999999999999999999987653 56888888765321111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|+.+|++++.+++.++.++... +|++++|+||++.|++....
T Consensus 157 ---------------------------~~~y~~~K~a~~~~~~~l~~~~~~~----~i~~~~l~pg~v~~~~~~~~~~~~ 205 (264)
T PRK12829 157 ---------------------------RTPYAASKWAVVGLVKSLAIELGPL----GIRVNAILPGIVRGPRMRRVIEAR 205 (264)
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCCcCChHHHHHhhhh
Confidence 1679999999999999999998766 89999999999998865321
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+++++++.+.+++++....++|+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~ 255 (264)
T PRK12829 206 AQQLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFLASPAARYITGQAI 255 (264)
T ss_pred hhccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEE
Confidence 1267899999999988776677888877
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-18 Score=162.54 Aligned_cols=181 Identities=25% Similarity=0.282 Sum_probs=138.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHH---------------------------hc-
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLK---------------------------DR- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~---------------------------~~- 234 (484)
++.|++|||||+++||++++++|+++ |++|++..|+.+ ..+...+.+. ..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARA-GADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999998 888877555432 2222211111 00
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+ ......++++..+++|+.+.+.+++.+.+.+++. +++|++||..+......
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~---------- 152 (249)
T PRK12825 83 GRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPG---------- 152 (249)
T ss_pred CCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCC----------
Confidence 0 0112457789999999999999999999988653 69999999887422111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|+.+|++++++++.++.++.+. ||++++|+||.+.|++.....
T Consensus 153 --------------------------~~~y~~sK~~~~~~~~~~~~~~~~~----~i~~~~i~pg~~~~~~~~~~~~~~~ 202 (249)
T PRK12825 153 --------------------------RSNYAAAKAGLVGLTKALARELAEY----GITVNMVAPGDIDTDMKEATIEEAR 202 (249)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEEECCccCCccccccchhH
Confidence 2689999999999999999998776 999999999999999854321
Q ss_pred -----------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+++|+++.+.++++....+++|+.+ .+++++
T Consensus 203 ~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~--~i~~g~ 246 (249)
T PRK12825 203 EAKDAETPLGRSGTPEDIARAVAFLCSDASDYITGQVI--EVTGGV 246 (249)
T ss_pred HhhhccCCCCCCcCHHHHHHHHHHHhCccccCcCCCEE--EeCCCE
Confidence 247899999999999888888999988 555554
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=168.54 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=113.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc--------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR-------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~-------- 234 (484)
|++|||||++|||+++|++|+++ |++|++++|+.+..++..+... +.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 81 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR-GDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV 81 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 78999999999999999999998 8899999998765544322211 00
Q ss_pred ---C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcccccc
Q psy8786 235 ---A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ---~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+ ......++++..+++|+.+++.++++++|.|++ .++||++||..+. ..+.
T Consensus 82 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------------- 144 (276)
T PRK06482 82 SNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPG----------------- 144 (276)
T ss_pred ECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCC-----------------
Confidence 0 011234678899999999999999999999865 3799999998763 2221
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+++++++++++.++.+. ||+++.|+||.+.|++...
T Consensus 145 --------------------~~~Y~~sK~a~~~~~~~l~~~~~~~----gi~v~~v~pg~~~t~~~~~ 188 (276)
T PRK06482 145 --------------------FSLYHATKWGIEGFVEAVAQEVAPF----GIEFTIVEPGPARTNFGAG 188 (276)
T ss_pred --------------------CchhHHHHHHHHHHHHHHHHHhhcc----CcEEEEEeCCccccCCccc
Confidence 2789999999999999999998776 9999999999999998654
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=165.61 Aligned_cols=179 Identities=21% Similarity=0.280 Sum_probs=137.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|++|||||+++||++++++|+++ |++|++++|+.+..++..+++...
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAA-GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999 889999999876655444333210
Q ss_pred -------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
.. .....++++.++++|+.|++.+++++++.|++. +++|++||..+......
T Consensus 80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~------------- 146 (255)
T TIGR01963 80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPF------------- 146 (255)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCC-------------
Confidence 00 111346788899999999999999999988653 68999999766322111
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--------- 370 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--------- 370 (484)
...|+.+|++++++++.++.++... ||+|+.|+||.+.|++...
T Consensus 147 -----------------------~~~y~~sk~a~~~~~~~~~~~~~~~----~i~v~~i~pg~v~~~~~~~~~~~~~~~~ 199 (255)
T TIGR01963 147 -----------------------KSAYVAAKHGLIGLTKVLALEVAAH----GITVNAICPGYVRTPLVEKQIADQAKTR 199 (255)
T ss_pred -----------------------CchhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCccccHHHHHHHHhhhccc
Confidence 1689999999999999999988776 8999999999999886311
Q ss_pred ------------------CCCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 ------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 ------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
....+++|+|+.+++++++....++|+.+ .+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~--~~~~g~ 252 (255)
T TIGR01963 200 GIPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAI--VLDGGW 252 (255)
T ss_pred CCCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEE--EEcCcc
Confidence 01267899999999998776566788876 455555
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=169.14 Aligned_cols=191 Identities=20% Similarity=0.142 Sum_probs=128.9
Q ss_pred HHHHHHhcCCCeEEEEecCchhHH----------------HHHHHHHhc------CCCCccHHHHHHHHHhhhHHHHHHH
Q psy8786 202 IVKSLCEQFDGYIYLTARDKKKGA----------------EAVQVLKDR------ASTVPFAIQAEKTILTNYLGLVRTC 259 (484)
Q Consensus 202 iA~~La~~gga~Vvl~~R~~~~~~----------------~~~~~l~~~------~~~~~~~~~~~~~~~vN~~g~~~l~ 259 (484)
+|++|+++ |++|++++|+.++.+ ++.+++... .......+.++.++++|+.+++.++
T Consensus 1 ~a~~l~~~-G~~Vv~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~~~vN~~~~~~l~ 79 (241)
T PRK12428 1 TARLLRFL-GARVIGVDRREPGMTLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGTAPVELVARVNFLGLRHLT 79 (241)
T ss_pred ChHHHHhC-CCEEEEEeCCcchhhhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHhhhhchHHHHHHH
Confidence 47888888 889999988765432 111111000 1111123568899999999999999
Q ss_pred HHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHH
Q psy8786 260 VFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339 (484)
Q Consensus 260 ~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~ 339 (484)
++++|.|+++|+||++||.+++..+...... +.... ..+..... .. ....... +...|++||+|++++++.
T Consensus 80 ~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~-~~~~~---~~~~~~~~-~~--~~~~~~~--~~~~Y~~sK~a~~~~~~~ 150 (241)
T PRK12428 80 EALLPRMAPGGAIVNVASLAGAEWPQRLELH-KALAA---TASFDEGA-AW--LAAHPVA--LATGYQLSKEALILWTMR 150 (241)
T ss_pred HHHHHhccCCcEEEEeCcHHhhccccchHHH-Hhhhc---cchHHHHH-Hh--hhccCCC--cccHHHHHHHHHHHHHHH
Confidence 9999999878999999999885322111000 00000 00000000 00 0000011 127899999999999999
Q ss_pred HH-HHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccc
Q psy8786 340 YQ-KKFDCELGNQDKVINAVHPGYVATNMSSFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINT 401 (484)
Q Consensus 340 LA-~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~ 401 (484)
++ .|++++ |||||+|+||+|.|+|.... ...+|+|+|+.+.||+++.+.+++|+.+
T Consensus 151 la~~e~~~~----girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~~~~l~s~~~~~~~G~~i-- 224 (241)
T PRK12428 151 QAQPWFGAR----GIRVNCVAPGPVFTPILGDFRSMLGQERVDSDAKRMGRPATADEQAAVLVFLCSDAARWINGVNL-- 224 (241)
T ss_pred HHHHhhhcc----CeEEEEeecCCccCcccccchhhhhhHhhhhcccccCCCCCHHHHHHHHHHHcChhhcCccCcEE--
Confidence 99 888776 99999999999999986421 0257999999999999999999999988
Q ss_pred cccceee
Q psy8786 402 FIPAIYT 408 (484)
Q Consensus 402 ~~~g~~~ 408 (484)
.++|++.
T Consensus 225 ~vdgg~~ 231 (241)
T PRK12428 225 PVDGGLA 231 (241)
T ss_pred EecCchH
Confidence 6777764
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=160.94 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=129.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHHh----------------------------c
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLKD----------------------------R 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~~----------------------------~ 234 (484)
+++|++|||||++|||++++++|+++ |++|++++|+. +..++..+.+.. .
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAA-GYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999998 89999998863 222222211110 0
Q ss_pred -----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 -----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+. .....++++..+++|+.|++.+.+++.+.+.+ .++++++++..+.....
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 151 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLK----------- 151 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCCCC-----------
Confidence 10 11234678899999999999999999998854 57888877654421111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
+...|++||++++.+++.++.++.+ +|++++|+||++.|++....
T Consensus 152 -------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~-----~i~~~~v~pg~~~~~~~~~~~~~~~ 201 (249)
T PRK09135 152 -------------------------GYPVYCAAKAALEMLTRSLALELAP-----EVRVNAVAPGAILWPEDGNSFDEEA 201 (249)
T ss_pred -------------------------CchhHHHHHHHHHHHHHHHHHHHCC-----CCeEEEEEeccccCccccccCCHHH
Confidence 1278999999999999999998743 69999999999999975421
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+++|+++.+.+++.+ ..+.+|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~d~a~~~~~~~~~-~~~~~g~~~ 239 (249)
T PRK09135 202 RQAILARTPLKRIGTPEDIAEAVRFLLAD-ASFITGQIL 239 (249)
T ss_pred HHHHHhcCCcCCCcCHHHHHHHHHHHcCc-cccccCcEE
Confidence 115789999999888864 456788877
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=161.17 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=129.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHH----------------HHHHHHhc----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAE----------------AVQVLKDR---------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~----------------~~~~l~~~---------- 234 (484)
+++.+|+++||||++|||+++|++|+++ |+ +|++++|+.+++++ ..+++...
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 80 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLAR-GAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN 80 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence 4568899999999999999999999998 77 89999998665431 01111110
Q ss_pred -C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 -A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 -~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+ ......++++..+++|+.+++.+++++.+.+++ .+++|++||..+......
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~------------------ 142 (238)
T PRK08264 81 AGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPN------------------ 142 (238)
T ss_pred CCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCC------------------
Confidence 1 112245888999999999999999999998864 479999999876422111
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--CCCHHhHHHH
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--NVNIFDDSST 382 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--~~~peevA~~ 382 (484)
...|+.+|++++++++.++.++.+. ||++++++||.++|++..... ..+++++++.
T Consensus 143 ------------------~~~y~~sK~a~~~~~~~l~~~~~~~----~i~~~~v~pg~v~t~~~~~~~~~~~~~~~~a~~ 200 (238)
T PRK08264 143 ------------------LGTYSASKAAAWSLTQALRAELAPQ----GTRVLGVHPGPIDTDMAAGLDAPKASPADVARQ 200 (238)
T ss_pred ------------------chHhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeCCcccccccccCCcCCCCHHHHHHH
Confidence 2689999999999999999998876 999999999999999865432 4788999998
Q ss_pred HHHHHhh
Q psy8786 383 FNAFERV 389 (484)
Q Consensus 383 ~~~L~s~ 389 (484)
++.....
T Consensus 201 ~~~~~~~ 207 (238)
T PRK08264 201 ILDALEA 207 (238)
T ss_pred HHHHHhC
Confidence 8766543
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-18 Score=163.04 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=120.3
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------------------HHHHHHH-HHhc----------
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------------------GAEAVQV-LKDR---------- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------------------~~~~~~~-l~~~---------- 234 (484)
++|||||++|||+++|++|+++ |++|++++|+.++ .+++.++ +.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQP-GIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLL 81 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhC-CCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceEE
Confidence 6999999999999999999998 8999998886431 1111111 1110
Q ss_pred ----C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 ----A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ----~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
+ ......++++..+++|+.|++.+++.+.+.+++ .++||++||..+.....
T Consensus 82 v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------------- 145 (243)
T PRK07023 82 INNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYA---------------- 145 (243)
T ss_pred EEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCC----------------
Confidence 0 011234788999999999999999999999864 47999999987642211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
+...|+++|++++++++.++.+ ... ||++|+|+||+++|++....
T Consensus 146 --------------------~~~~Y~~sK~a~~~~~~~~~~~-~~~----~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~ 200 (243)
T PRK07023 146 --------------------GWSVYCATKAALDHHARAVALD-ANR----ALRIVSLAPGVVDTGMQATIRATDEERFPM 200 (243)
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHhc-CCC----CcEEEEecCCccccHHHHHHHhcccccchH
Confidence 1278999999999999999998 554 89999999999999874210
Q ss_pred -----------CCCCHHhHHH-HHHHHHhhh
Q psy8786 372 -----------GNVNIFDDSS-TFNAFERVI 390 (484)
Q Consensus 372 -----------~~~~peevA~-~~~~L~s~~ 390 (484)
...+|+|+|. .+.+|.++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~va~~~~~~l~~~~ 231 (243)
T PRK07023 201 RERFRELKASGALSTPEDAARRLIAYLLSDD 231 (243)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhccc
Confidence 1257888888 456776554
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=159.59 Aligned_cols=172 Identities=21% Similarity=0.221 Sum_probs=129.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH---------------------HHHHhc---------CC
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV---------------------QVLKDR---------AS 236 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~---------------------~~l~~~---------~~ 236 (484)
|+++||||++|||+++|++|+++ |++|++++|+.+..++.. +++... +.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRAD-GWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhC-CCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 68999999999999999999998 899999999866543321 111110 00
Q ss_pred --------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 237 --------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 237 --------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
...+.++++..+++|+.+++.+++++.+.|++ .+++++++|..+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------------------- 140 (222)
T PRK06953 81 YGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG-------------------- 140 (222)
T ss_pred ccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC--------------------
Confidence 01245789999999999999999999998865 4799999998763221110
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCCCHHhHHHHHHHHH
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFE 387 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~peevA~~~~~L~ 387 (484)
.+...|+++|++++++++.++.++ . +|+||+|+||+++|++.....+..+++.+..+..++
T Consensus 141 -------------~~~~~Y~~sK~a~~~~~~~~~~~~--~----~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~ 201 (222)
T PRK06953 141 -------------TTGWLYRASKAALNDALRAASLQA--R----HATCIALHPGWVRTDMGGAQAALDPAQSVAGMRRVI 201 (222)
T ss_pred -------------CCccccHHhHHHHHHHHHHHhhhc--c----CcEEEEECCCeeecCCCCCCCCCCHHHHHHHHHHHH
Confidence 001369999999999999998875 2 799999999999999988766778899998887765
Q ss_pred hhhcccccccc
Q psy8786 388 RVISHFLIGQQ 398 (484)
Q Consensus 388 s~~a~~itG~~ 398 (484)
.......+|+.
T Consensus 202 ~~~~~~~~~~~ 212 (222)
T PRK06953 202 AQATRRDNGRF 212 (222)
T ss_pred HhcCcccCceE
Confidence 44434444443
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=163.03 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=114.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|++|||||++|||++++++|+++ |++|++++|+.++.++..+.....
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARK-GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 478999999999999999999998 899999999876655443322110
Q ss_pred -------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
.......+.++..+++|+.+++.+++.+++.+++. ++||++||..+......
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~------------------- 141 (257)
T PRK09291 81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPF------------------- 141 (257)
T ss_pred CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCC-------------------
Confidence 00122346788899999999999999999988653 79999999876322111
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
...|++||++++++++.++.++.+. ||++++|+||++.|++..
T Consensus 142 -----------------~~~Y~~sK~a~~~~~~~l~~~~~~~----gi~~~~v~pg~~~t~~~~ 184 (257)
T PRK09291 142 -----------------TGAYCASKHALEAIAEAMHAELKPF----GIQVATVNPGPYLTGFND 184 (257)
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHHHhc----CcEEEEEecCcccccchh
Confidence 1689999999999999999998776 999999999999998764
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=157.86 Aligned_cols=169 Identities=25% Similarity=0.335 Sum_probs=132.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHHhc---------------------------------
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLKDR--------------------------------- 234 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~~~--------------------------------- 234 (484)
+||||+++|||.++|+.|+++ |++|++++|+. +..++..+.+...
T Consensus 1 vlItG~~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE-GAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 589999999999999999998 89999998874 3332222222110
Q ss_pred -----C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcccc
Q psy8786 235 -----A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -----~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~ 300 (484)
+ ......+.++..+++|+.+++.+++.+.+.+.+ .++++++||.++. +.+.
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~--------------- 144 (239)
T TIGR01830 80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAG--------------- 144 (239)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCC---------------
Confidence 0 011234778899999999999999999998754 4799999998763 3222
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------- 372 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------- 372 (484)
...|+++|++++.+++.++.++... |+++|+|+||+++|++.....
T Consensus 145 ----------------------~~~y~~~k~a~~~~~~~l~~~~~~~----g~~~~~i~pg~~~~~~~~~~~~~~~~~~~ 198 (239)
T TIGR01830 145 ----------------------QANYAASKAGVIGFTKSLAKELASR----NITVNAVAPGFIDTDMTDKLSEKVKKKIL 198 (239)
T ss_pred ----------------------CchhHHHHHHHHHHHHHHHHHHhhc----CeEEEEEEECCCCChhhhhcChHHHHHHH
Confidence 2689999999999999999988766 999999999999998753321
Q ss_pred -------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 373 -------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 373 -------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
..+++|+++.+++++++...+++|+.+
T Consensus 199 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~ 232 (239)
T TIGR01830 199 SQIPLGRFGTPEEVANAVAFLASDEASYITGQVI 232 (239)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCcccCCcCCCEE
Confidence 257999999999999887778899876
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=150.84 Aligned_cols=119 Identities=27% Similarity=0.346 Sum_probs=99.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC--chhHHHHHHHHHhc------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD--KKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~--~~~~~~~~~~l~~~------------------------------ 234 (484)
|++|||||++|||+++|++|+++|+.+|++++|+ .+..++..++++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999955578899998 56666666666532
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhccc
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~ 299 (484)
.......++++..+++|+.+++.+.+++.| ++.++||++||.++ .+.+..
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~sS~~~~~~~~~~------------- 145 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNISSIAGVRGSPGM------------- 145 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEEEGGGTSSSTTB-------------
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehhee--ccccceEEecchhhccCCCCC-------------
Confidence 111224589999999999999999999999 67899999999998 444332
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHh
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 344 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~el 344 (484)
..|++||+|+.+|++++++|+
T Consensus 146 ------------------------~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 146 ------------------------SAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hhHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999987
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-17 Score=157.79 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=124.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH---------------------HHHHHhc-----------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA---------------------VQVLKDR----------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~---------------------~~~l~~~----------- 234 (484)
|+++||||++|||+++|+.|+++ |++|++++|+.++.+.. .+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ 81 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-GYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN 81 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 78999999999999999999998 88999999987654422 1111110
Q ss_pred -C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+ ......++++..+++|+.|++.+++.+++.+++. ++||++||..+......
T Consensus 82 ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~------------------- 142 (256)
T PRK08017 82 AGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPG------------------- 142 (256)
T ss_pred CCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCC-------------------
Confidence 0 0112446788999999999999999999988653 79999999876322111
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------------- 372 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------------- 372 (484)
...|++||++++.++++++.++... ||++++|+||.+.|++.....
T Consensus 143 -----------------~~~Y~~sK~~~~~~~~~l~~~~~~~----~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~ 201 (256)
T PRK08017 143 -----------------RGAYAASKYALEAWSDALRMELRHS----GIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGI 201 (256)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHhhc----CCEEEEEeCCCcccchhhcccchhhccchhhhHH
Confidence 2689999999999999999988776 999999999999998754321
Q ss_pred ----CCCHHhHHHHHHHHHhhh
Q psy8786 373 ----NVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 373 ----~~~peevA~~~~~L~s~~ 390 (484)
..+++|+++.+..+.+..
T Consensus 202 ~~~~~~~~~d~a~~~~~~~~~~ 223 (256)
T PRK08017 202 AARFTLGPEAVVPKLRHALESP 223 (256)
T ss_pred HhhcCCCHHHHHHHHHHHHhCC
Confidence 156788888877766443
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=159.54 Aligned_cols=157 Identities=20% Similarity=0.130 Sum_probs=132.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
+.++||||++|||+++|+++..+ |++|.++.|+.+++.++++++.-.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~-ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKRE-GADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHc-cCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 57999999999999999999999 999999999999998887776532
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCc-cccccchHHHHHHHhh
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAG-HLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag-~~~~~~~~~~~~~~~~ 296 (484)
-..+...+.++..+++|++|+++++++.++.|++. |+|+.++|.++ .+...
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~G----------- 181 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYG----------- 181 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCccc-----------
Confidence 11233457889999999999999999999999864 59999999988 33333
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
.++|++||+|+.+|..++++|+.++ ||+|..+.|+.+.||.+....
T Consensus 182 --------------------------ysaYs~sK~alrgLa~~l~qE~i~~----~v~Vt~~~P~~~~tpGfE~En~tkP 231 (331)
T KOG1210|consen 182 --------------------------YSAYSPSKFALRGLAEALRQELIKY----GVHVTLYYPPDTLTPGFERENKTKP 231 (331)
T ss_pred --------------------------ccccccHHHHHHHHHHHHHHHHhhc----ceEEEEEcCCCCCCCccccccccCc
Confidence 2899999999999999999999988 999999999999999765432
Q ss_pred -----------CCCHHhHHHHHHH
Q psy8786 373 -----------NVNIFDDSSTFNA 385 (484)
Q Consensus 373 -----------~~~peevA~~~~~ 385 (484)
...+||+|..++-
T Consensus 232 ~~t~ii~g~ss~~~~e~~a~~~~~ 255 (331)
T KOG1210|consen 232 EETKIIEGGSSVIKCEEMAKAIVK 255 (331)
T ss_pred hheeeecCCCCCcCHHHHHHHHHh
Confidence 1678888887654
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=165.98 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=120.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH-----------------HHhc----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-----------------LKDR---------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~-----------------l~~~---------- 234 (484)
.+++||+++||||++|||+++|++|+++ |++|++++|+.++.++..+. +.+.
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~-G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQ-GAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 4678999999999999999999999998 89999999987655432211 0000
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC------CEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH------ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~------grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
.....+.++++.++++|+.|++.++++++|.|++. +.+|++|+ ++...+.
T Consensus 253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~~~~~------------------- 312 (406)
T PRK07424 253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEVNPAF------------------- 312 (406)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-ccccCCC-------------------
Confidence 11123457889999999999999999999999653 23555554 3321111
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCCCHHhHHHHHH
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFN 384 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~peevA~~~~ 384 (484)
...|++||+|+.+++. ++++. . ++.|..++||+++|++... ...+||++|+.++
T Consensus 313 ------------------~~~Y~ASKaAl~~l~~-l~~~~--~----~~~I~~i~~gp~~t~~~~~-~~~spe~vA~~il 366 (406)
T PRK07424 313 ------------------SPLYELSKRALGDLVT-LRRLD--A----PCVVRKLILGPFKSNLNPI-GVMSADWVAKQIL 366 (406)
T ss_pred ------------------chHHHHHHHHHHHHHH-HHHhC--C----CCceEEEEeCCCcCCCCcC-CCCCHHHHHHHHH
Confidence 1579999999999984 44332 2 5777888999999998642 3479999999999
Q ss_pred HHHhhhcc
Q psy8786 385 AFERVISH 392 (484)
Q Consensus 385 ~L~s~~a~ 392 (484)
+.++....
T Consensus 367 ~~i~~~~~ 374 (406)
T PRK07424 367 KLAKRDFR 374 (406)
T ss_pred HHHHCCCC
Confidence 88865544
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=144.35 Aligned_cols=161 Identities=22% Similarity=0.250 Sum_probs=122.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----------------------c-------C
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----------------------R-------A 235 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----------------------~-------~ 235 (484)
.|++|||||+++||+++++.|+++ ++|++++|+.++.++..++... . +
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 478999999999999999999986 7899999987664433221100 0 0
Q ss_pred ------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhcccccccccccc
Q psy8786 236 ------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 236 ------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
......++++..+++|+.+.+.+++.+++.+++ .+++|++||..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~----------------------- 137 (227)
T PRK08219 81 VADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRANP----------------------- 137 (227)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcCC-----------------------
Confidence 011234678899999999999999999998865 47999999987642211
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------CCCCHH
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----------GNVNIF 377 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------~~~~pe 377 (484)
+...|+.+|++++++++.++.++.. . |++++|+||.+.|++.... ...+++
T Consensus 138 -------------~~~~y~~~K~a~~~~~~~~~~~~~~----~-i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (227)
T PRK08219 138 -------------GWGSYAASKFALRALADALREEEPG----N-VRVTSVHPGRTDTDMQRGLVAQEGGEYDPERYLRPE 199 (227)
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHhcC----C-ceEEEEecCCccchHhhhhhhhhccccCCCCCCCHH
Confidence 1268999999999999999887642 2 9999999999998864321 126899
Q ss_pred hHHHHHHHHHhh
Q psy8786 378 DDSSTFNAFERV 389 (484)
Q Consensus 378 evA~~~~~L~s~ 389 (484)
|+++.++++++.
T Consensus 200 dva~~~~~~l~~ 211 (227)
T PRK08219 200 TVAKAVRFAVDA 211 (227)
T ss_pred HHHHHHHHHHcC
Confidence 999999998854
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=148.87 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=92.6
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCc
Q psy8786 238 VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314 (484)
Q Consensus 238 ~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (484)
..+.++|.+.++.|+++.+.+.+.++|.+++. +.+||+||.+....-.
T Consensus 103 ~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~----------------------------- 153 (253)
T KOG1204|consen 103 LGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFS----------------------------- 153 (253)
T ss_pred cccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhcccc-----------------------------
Confidence 34568999999999999999999999999876 8999999988732211
Q ss_pred ccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC---------------------
Q psy8786 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN--------------------- 373 (484)
Q Consensus 315 ~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~--------------------- 373 (484)
+| ++||++|+|.++|.+.||.|=. + +++|.+++||.|+|+|......
T Consensus 154 -----~w--a~yc~~KaAr~m~f~~lA~EEp-~----~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~~l 221 (253)
T KOG1204|consen 154 -----SW--AAYCSSKAARNMYFMVLASEEP-F----DVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESGQL 221 (253)
T ss_pred -----HH--HHhhhhHHHHHHHHHHHhhcCc-c----ceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcCCc
Confidence 12 8999999999999999998643 3 8999999999999999754432
Q ss_pred CCHHhHHHHHHHHHhhhccccccccc
Q psy8786 374 VNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 374 ~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
.+|...|+.+.+|+-... +.+|+.+
T Consensus 222 l~~~~~a~~l~~L~e~~~-f~sG~~v 246 (253)
T KOG1204|consen 222 LDPQVTAKVLAKLLEKGD-FVSGQHV 246 (253)
T ss_pred CChhhHHHHHHHHHHhcC-ccccccc
Confidence 455566666655552221 6677654
|
|
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=144.27 Aligned_cols=155 Identities=27% Similarity=0.264 Sum_probs=123.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC----eEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG----YIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga----~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.|+++|||+++|||.+||++|.++..- .|++++|+.++++++.+.+.+-
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 489999999999999999999987333 4778899999999988888653
Q ss_pred ------------------------------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy8786 235 ------------------------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLL 266 (484)
Q Consensus 235 ------------------------------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l 266 (484)
.....+.++...+|++|++|+|.+++.+.|.+
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 11233457788999999999999999999988
Q ss_pred hcC--CEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHh
Q psy8786 267 RRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 344 (484)
Q Consensus 267 ~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~el 344 (484)
..+ ..+|++||..+.......+|++-... ..+|..||.++.-+.-++-+.+
T Consensus 163 ~~~~~~~lvwtSS~~a~kk~lsleD~q~~kg---------------------------~~pY~sSKrl~DlLh~A~~~~~ 215 (341)
T KOG1478|consen 163 CHSDNPQLVWTSSRMARKKNLSLEDFQHSKG---------------------------KEPYSSSKRLTDLLHVALNRNF 215 (341)
T ss_pred hcCCCCeEEEEeecccccccCCHHHHhhhcC---------------------------CCCcchhHHHHHHHHHHHhccc
Confidence 643 58999999988655544444432221 1689999999998888777766
Q ss_pred hhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 345 DCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 345 a~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
.+. |+.-++++||..-|.+....
T Consensus 216 ~~~----g~~qyvv~pg~~tt~~~~~~ 238 (341)
T KOG1478|consen 216 KPL----GINQYVVQPGIFTTNSFSEY 238 (341)
T ss_pred ccc----chhhhcccCceeecchhhhh
Confidence 665 99999999999999987654
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=147.73 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=119.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh------------c-----------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD------------R----------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~------------~----------------- 234 (484)
.+||+++||||+||||++++++|+++ |++|++++|+.+++++..+++.. .
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~-G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKL-GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 47899999999999999999999998 89999999998877655443211 0
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
+.......++...+++|+.|..++++++... ..++||++||.++......
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a--gVgRIV~VSSiga~~~g~p----------------- 217 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA--KVNHFILVTSLGTNKVGFP----------------- 217 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh--CCCEEEEEccchhcccCcc-----------------
Confidence 0000001235567888999999999887653 3479999999875211110
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-------------
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------------- 370 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------------- 370 (484)
...|. +|+++..+.+.+..++... ||++|.|+||++.|++...
T Consensus 218 -------------------~~~~~-sk~~~~~~KraaE~~L~~s----GIrvTIVRPG~L~tp~d~~~~t~~v~~~~~d~ 273 (576)
T PLN03209 218 -------------------AAILN-LFWGVLCWKRKAEEALIAS----GLPYTIVRPGGMERPTDAYKETHNLTLSEEDT 273 (576)
T ss_pred -------------------ccchh-hHHHHHHHHHHHHHHHHHc----CCCEEEEECCeecCCccccccccceeeccccc
Confidence 02244 7888888888888887766 9999999999998875321
Q ss_pred --CCCCCHHhHHHHHHHHHhhh-ccc
Q psy8786 371 --MGNVNIFDDSSTFNAFERVI-SHF 393 (484)
Q Consensus 371 --~~~~~peevA~~~~~L~s~~-a~~ 393 (484)
.+..+.+|+|+.++|++++. +.+
T Consensus 274 ~~gr~isreDVA~vVvfLasd~~as~ 299 (576)
T PLN03209 274 LFGGQVSNLQVAELMACMAKNRRLSY 299 (576)
T ss_pred cCCCccCHHHHHHHHHHHHcCchhcc
Confidence 01268899999999999844 344
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=168.62 Aligned_cols=140 Identities=21% Similarity=0.115 Sum_probs=109.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch------------------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK------------------------------------------ 222 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~------------------------------------------ 222 (484)
+||++|||||++|||+++|++|++++|++|++++|+..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 58999999999999999999999986789999999820
Q ss_pred -----hHHHHHHHHHhc-------------------------------------------CCCCccHHHHHHHHHhhhHH
Q psy8786 223 -----KGAEAVQVLKDR-------------------------------------------ASTVPFAIQAEKTILTNYLG 254 (484)
Q Consensus 223 -----~~~~~~~~l~~~-------------------------------------------~~~~~~~~~~~~~~~vN~~g 254 (484)
+.++..+++... .....+.++|+.++++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 001111111110 11233458999999999999
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHH
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGV 333 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl 333 (484)
.+.+++++.+.+ .++||++||.++. +.+. +..|+++|+++
T Consensus 2156 ~~~Ll~al~~~~--~~~IV~~SSvag~~G~~g-------------------------------------qs~YaaAkaaL 2196 (2582)
T TIGR02813 2156 LLSLLAALNAEN--IKLLALFSSAAGFYGNTG-------------------------------------QSDYAMSNDIL 2196 (2582)
T ss_pred HHHHHHHHHHhC--CCeEEEEechhhcCCCCC-------------------------------------cHHHHHHHHHH
Confidence 999999987754 3589999999984 3322 27899999999
Q ss_pred HHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 334 NLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 334 ~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
+.+++.++.++. ++|||+|+||+++|+|..
T Consensus 2197 ~~la~~la~~~~------~irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2197 NKAALQLKALNP------SAKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred HHHHHHHHHHcC------CcEEEEEECCeecCCccc
Confidence 999999988763 589999999999999863
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=133.09 Aligned_cols=138 Identities=20% Similarity=0.185 Sum_probs=100.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++||++|||||+|+||++++++|+++| +.+|++.+|+.....+..+.+...
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 468999999999999999999999983 267988888765433222222100
Q ss_pred CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
... .......+..+++|+.|+.++++++.+. ..++||++||.....
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~--~~~~iV~~SS~~~~~----------------------------- 130 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN--GVKRVVALSTDKAAN----------------------------- 130 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCC-----------------------------
Confidence 100 0112233578999999999999998863 236999999864321
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
|...|++||++.+.+++.++.+.+.. |+++++++||.|..+
T Consensus 131 ----------p~~~Y~~sK~~~E~l~~~~~~~~~~~----gi~~~~lR~g~v~G~ 171 (324)
T TIGR03589 131 ----------PINLYGATKLASDKLFVAANNISGSK----GTRFSVVRYGNVVGS 171 (324)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHhhcccc----CcEEEEEeecceeCC
Confidence 12679999999999999888766555 999999999999764
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=129.88 Aligned_cols=158 Identities=18% Similarity=0.079 Sum_probs=105.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH-----------------------Hh---c---
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-----------------------KD---R--- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l-----------------------~~---~--- 234 (484)
++||++|||||+|+||+++|++|+++ |++|++++|+.....+....+ .. +
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-CCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 36799999999999999999999998 899999988765332211111 00 0
Q ss_pred --C---CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 --A---STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 --~---~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
. ......++....+++|+.+++.+++++.. ....+++|++||...++........
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~iv~~SS~~vyg~~~~~~~~------------------- 140 (349)
T TIGR02622 81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRA-IGSVKAVVNVTSDKCYRNDEWVWGY------------------- 140 (349)
T ss_pred ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHh-cCCCCEEEEEechhhhCCCCCCCCC-------------------
Confidence 0 01112345678899999999999998754 2224699999997654321100000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.... ...|...|+.||.+++.+++.++.++.+....+|++++++.||.+..+-
T Consensus 141 ---~e~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 141 ---RETD--PLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred ---ccCC--CCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 0000 0012368999999999999998887744100027999999999998763
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=122.33 Aligned_cols=161 Identities=12% Similarity=-0.013 Sum_probs=100.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch--hHHHHHHHHHh---c------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK--KGAEAVQVLKD---R------------------------ 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~--~~~~~~~~l~~---~------------------------ 234 (484)
=.+|+++||||+|+||++++++|+++ |++|++++|+.+ +.++....+.. .
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~-G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSR-GYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 36789999999999999999999998 899999988532 22122222110 0
Q ss_pred -C-C--CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccc
Q psy8786 235 -A-S--TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -~-~--~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
. . .......++..+++|+.|++++++++.+.+ ..++||++||.++.. .+....+ ...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~riV~~SS~~a~~~~~~~~~~---------------~~~~~ 146 (297)
T PLN02583 83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD-TIEKVVFTSSLTAVIWRDDNIST---------------QKDVD 146 (297)
T ss_pred EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEecchHheecccccCCC---------------CCCCC
Confidence 0 0 000112357889999999999999998764 237999999987632 1100000 00000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
........+.......|+.||...+.++..++++ + |+++++|+||.|..|..
T Consensus 147 E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~---~----gi~~v~lrp~~v~Gp~~ 198 (297)
T PLN02583 147 ERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMD---R----GVNMVSINAGLLMGPSL 198 (297)
T ss_pred cccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHH---h----CCcEEEEcCCcccCCCC
Confidence 0000000000000136999999999888766543 2 89999999999987753
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=112.79 Aligned_cols=130 Identities=17% Similarity=0.121 Sum_probs=94.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHH------------------------------HHHHHHhc-
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAE------------------------------AVQVLKDR- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~------------------------------~~~~l~~~- 234 (484)
|+++||||++|||++++++|+++ |. .|++++|+.+..+. ..+++...
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAER-GARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARL 79 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHh-hCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999998 65 68888886543211 11111110
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
. ......++++..+++|+.+++.+++++.+ ...+++|+++|..+. +...
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~ii~~ss~~~~~~~~~------------ 145 (180)
T smart00822 80 GPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD--LPLDFFVLFSSVAGVLGNPG------------ 145 (180)
T ss_pred CCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc--CCcceEEEEccHHHhcCCCC------------
Confidence 0 11223477889999999999999998854 234799999998763 3222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
...|+++|+++..+++.++. + |+++.++.||++.
T Consensus 146 -------------------------~~~y~~sk~~~~~~~~~~~~----~----~~~~~~~~~g~~~ 179 (180)
T smart00822 146 -------------------------QANYAAANAFLDALAAHRRA----R----GLPATSINWGAWA 179 (180)
T ss_pred -------------------------chhhHHHHHHHHHHHHHHHh----c----CCceEEEeecccc
Confidence 16899999999999976543 3 8999999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=120.49 Aligned_cols=157 Identities=22% Similarity=0.101 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH--h----------c------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK--D----------R------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~--~----------~------------------ 234 (484)
+||++|||||+|+||++++++|+++ |++|++++|+.+..++...... . +
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFR-GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 4799999999999999999999998 8999888888654332211110 0 0
Q ss_pred --CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccc----hHHHHHHHhhccccccccc
Q psy8786 235 --AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQIT----NLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 --~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~----~~~~~~~~~~~~~~~~~~~ 305 (484)
... ....+.+...+++|+.|++++++++.+.+. .++||++||.+++..+.. .....+.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~-~~~iv~~SS~~~~~~~~~~~~~~~~~~E~------------ 149 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSS-VKRVILTSSMAAVLAPETKLGPNDVVDET------------ 149 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-ceEEEEecchhheecCCccCCCCCccCcC------------
Confidence 110 111245678899999999999999887542 469999999876432210 0000000
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
..........+...|+.||.+.+.+++.++++. |+.++.+.|+.+..|..
T Consensus 150 ------~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilR~~~vyGp~~ 199 (325)
T PLN02989 150 ------FFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN-------EIDLIVLNPGLVTGPIL 199 (325)
T ss_pred ------CCCchhHhcccccchHHHHHHHHHHHHHHHHHc-------CCeEEEEcCCceeCCCC
Confidence 000000000012579999999999998776543 79999999999987753
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-09 Score=107.37 Aligned_cols=155 Identities=25% Similarity=0.174 Sum_probs=101.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH--HHHHHHhc----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE--AVQVLKDR---------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~--~~~~l~~~---------------------------- 234 (484)
.+++|+||||+|.||..|++.|+++ |+.|..+.|++++.+. ...+++..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-CCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence 6789999999999999999999999 9999999999887433 23333321
Q ss_pred --CCCCcc-H-HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 235 --ASTVPF-A-IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 235 --~~~~~~-~-~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
+....+ . +.-.+.++.++.|+.++++++...- .--|||++||.++........
T Consensus 84 H~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv~~~~~~~---------------------- 140 (327)
T KOG1502|consen 84 HTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAVRYNGPNI---------------------- 140 (327)
T ss_pred EeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHhccCCcCC----------------------
Confidence 111111 1 1122678899999999999887642 236999999998843321100
Q ss_pred CCCcccccCCCCC--------hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 311 EHPRAHVAKGWPD--------SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 311 ~~~~~~~~~~~~~--------~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
..........|.. ..|+.||. +++-.|.+++++ .|+...+|+||.|--|....
T Consensus 141 ~~~~vvdE~~wsd~~~~~~~~~~Y~~sK~----lAEkaAw~fa~e---~~~~lv~inP~lV~GP~l~~ 201 (327)
T KOG1502|consen 141 GENSVVDEESWSDLDFCRCKKLWYALSKT----LAEKAAWEFAKE---NGLDLVTINPGLVFGPGLQP 201 (327)
T ss_pred CCCcccccccCCcHHHHHhhHHHHHHHHH----HHHHHHHHHHHh---CCccEEEecCCceECCCccc
Confidence 0000000111111 36888887 445555677665 37999999999998776554
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=112.43 Aligned_cols=158 Identities=19% Similarity=0.093 Sum_probs=99.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH----------------------h---c----
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK----------------------D---R---- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~----------------------~---~---- 234 (484)
..||+++||||+|+||++++++|+++ |++|+++.|+.+..+...+... . .
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLR-GYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 36899999999999999999999998 8999988887654332211110 0 0
Q ss_pred ---CCCC-c-cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc--ccccc--hHHHHHHHhhccccccccc
Q psy8786 235 ---ASTV-P-FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH--LSQIT--NLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 ---~~~~-~-~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~--~~~~~--~~~~~~~~~~~~~~~~~~~ 305 (484)
.... . ..+.....+++|+.|+.++++++.... .-.+||++||.+.+ ..+.. ...+.+.
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~-~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~------------ 148 (322)
T PLN02986 82 FHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETP-SVKRVILTSSTAAVLFRQPPIEANDVVDET------------ 148 (322)
T ss_pred EEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcC-CccEEEEecchhheecCCccCCCCCCcCcc------------
Confidence 1100 0 112334578899999999999876431 12599999998753 11110 0000000
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
..........+...|+.||.+.+.+++.+.++. |+++++++|+.|..|..
T Consensus 149 ------~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~-------~~~~~~lrp~~v~Gp~~ 198 (322)
T PLN02986 149 ------FFSDPSLCRETKNWYPLSKILAENAAWEFAKDN-------GIDMVVLNPGFICGPLL 198 (322)
T ss_pred ------cCCChHHhhccccchHHHHHHHHHHHHHHHHHh-------CCeEEEEcccceeCCCC
Confidence 000000000012579999999988887665532 79999999999988753
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.4e-10 Score=112.88 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=97.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----HHHH------------------------HHHHHh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----GAEA------------------------VQVLKD 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----~~~~------------------------~~~l~~ 233 (484)
|.++|++|||||+|+||++++++|+++ |++|++++|+.+. ++.. .+.+..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999998 8999988875421 1111 011110
Q ss_pred ---c-----CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCC---EEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 234 ---R-----AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHA---RVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 234 ---~-----~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~g---rIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
+ ... ....+..+..+++|+.|+.++++++.+...+.+ ++|++||...++..... .
T Consensus 82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~--~--------- 150 (340)
T PLN02653 82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPP--Q--------- 150 (340)
T ss_pred cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCC--C---------
Confidence 0 100 111234566788999999999999988765434 78888876544321100 0
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
. ... ...|...|+.||.+.+.+++.++.+++-.. ..++.+|.+.||..
T Consensus 151 ---------~----E~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~-~~~~~~~~~gp~~~ 198 (340)
T PLN02653 151 ---------S----ETT--PFHPRSPYAVAKVAAHWYTVNYREAYGLFA-CNGILFNHESPRRG 198 (340)
T ss_pred ---------C----CCC--CCCCCChhHHHHHHHHHHHHHHHHHcCCeE-EEeeeccccCCCCC
Confidence 0 000 011236899999999999999888764211 11456677777643
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=112.03 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=40.2
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 324 ~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
..-+.+|++|+.-++.|+.+|++. |||+|++..|.+.|.-....+
T Consensus 238 g~mG~AKa~LE~~~r~La~~L~~~----giran~i~~g~~~T~Ass~Ip 282 (398)
T PRK13656 238 GTIGKAKKDLDRTALALNEKLAAK----GGDAYVSVLKAVVTQASSAIP 282 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhc----CCEEEEEecCcccchhhhcCC
Confidence 356999999999999999999987 999999999999998766554
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=112.60 Aligned_cols=159 Identities=18% Similarity=0.082 Sum_probs=100.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------hc------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------DR------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------~~------------------ 234 (484)
..|++|||||+|+||++++++|+++ |.+|++++|+.+..++...... .+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 4688999999999999999999998 8899998887654432211110 00
Q ss_pred --CCCC--ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccc-hHHHHHHHhhccccccccccccc
Q psy8786 235 --ASTV--PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQIT-NLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 --~~~~--~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
.... ...+..+..+++|+.|+.++++++.+.. ...+||++||...+..... ...+.+.. ....
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~SS~~~~~~~~~~~~~~~E~~--------~~~~--- 150 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTSSAGTVNVEEHQKPVYDEDC--------WSDL--- 150 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEecchhhcccCCCCCCccCccc--------CCch---
Confidence 1000 0112235678999999999999987642 1258999999754321110 00000000 0000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
........+...|+.||.+.+.+++.+++++ |++++.+.|+.|..|.
T Consensus 151 ----~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilRp~~v~Gp~ 197 (351)
T PLN02650 151 ----DFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN-------GLDFISIIPTLVVGPF 197 (351)
T ss_pred ----hhhhccccccchHHHHHHHHHHHHHHHHHHc-------CCeEEEECCCceECCC
Confidence 0000001122579999999999998777642 8999999999998774
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=109.31 Aligned_cols=160 Identities=18% Similarity=0.105 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH--HH-----------------------HHhc----
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV--QV-----------------------LKDR---- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~--~~-----------------------l~~~---- 234 (484)
+++|+++||||+|+||++++++|+++ |++|++++|+.+...... .. +.+.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 35789999999999999999999998 889988888754321110 00 0000
Q ss_pred --CCCC--ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcccccc---chHHHHHHHhhccccccccccc
Q psy8786 235 --ASTV--PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI---TNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 --~~~~--~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
.... .........+++|+.|+.++++++.+.. ..+++|++||.+.++... ......+..
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~------------- 151 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTSSAAAVSINKLSGTGLVMNEKN------------- 151 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeecceeeeccCCCCCCceecccc-------------
Confidence 1110 1112334567899999999999987642 236999999987653211 000000000
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
... .........|...|+.||.+.+.+++.++.++ |++++.+.|+.|..|-
T Consensus 152 ~~~--~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 152 WTD--VEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN-------NIDLITVIPTLMAGPS 202 (338)
T ss_pred CCc--hhhhhhcCCccchhHHHHHHHHHHHHHHHHhc-------CceEEEEeCCceECCC
Confidence 000 00000001123679999999999998776642 7999999999987764
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=111.66 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc----h----------------hHH----------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK----K----------------KGA---------------- 225 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~----~----------------~~~---------------- 225 (484)
.++++|+||||||+|+||++++++|+++ |++|++++|.. + .++
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~D 121 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKR-GYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGD 121 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECC
Confidence 3467899999999999999999999998 88999876421 0 000
Q ss_pred -----HHHHHHHh---c-----CCC--Cc----cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccc
Q psy8786 226 -----EAVQVLKD---R-----AST--VP----FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQIT 286 (484)
Q Consensus 226 -----~~~~~l~~---~-----~~~--~~----~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~ 286 (484)
...+.+.. + ... .. ..+.++..+++|+.|++++++++...- -..++|++||...++.+..
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~SS~~vYG~~~~ 200 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKLGTMGEYGTPNI 200 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEecceecCCCCC
Confidence 00011111 0 100 00 112345668899999999999876531 1248999999876543211
Q ss_pred hHHHHHHHhhccccccccccccccCC-CcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEH-PRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
. ..+.. +...... .........|...|+.||.+.+.+++.++..+ |+.+..+.|+.|.-
T Consensus 201 ~--~~E~~-----------i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~-------gl~~v~lR~~~vyG 260 (442)
T PLN02572 201 D--IEEGY-----------ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-------GIRATDLNQGVVYG 260 (442)
T ss_pred C--Ccccc-----------cccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc-------CCCEEEEecccccC
Confidence 0 00000 0000000 00000011133689999999999888766543 89999999999876
Q ss_pred CC
Q psy8786 366 NM 367 (484)
Q Consensus 366 ~m 367 (484)
+.
T Consensus 261 p~ 262 (442)
T PLN02572 261 VR 262 (442)
T ss_pred CC
Confidence 64
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-09 Score=108.08 Aligned_cols=156 Identities=17% Similarity=0.073 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH-HHHHHh---c-------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA-VQVLKD---R------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~-~~~l~~---~------------------------- 234 (484)
+++|+++||||+|+||++++++|+++ |++|++++|+.+..... ...+.. .
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 46789999999999999999999998 89999999976542211 111110 0
Q ss_pred CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchH--HHHHHHhhccccccccccccccC
Q psy8786 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNL--ELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
........+.+..+++|+.|+.++++++... .-.+||++||.++ ++.+.... .+++..
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~--~v~r~V~~SS~~avyg~~~~~~~~~~~E~~----------------- 147 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEA--KVKRVVITSSIGAVYMDPNRDPEAVVDESC----------------- 147 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEeccceeeeccCCCCCCcccCccc-----------------
Confidence 0000112345678899999999999988753 2258999999765 33211100 000000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.........+...|+.||.+.+.+++.++++. |+++..++|+.|--|.
T Consensus 148 -~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~-------g~~~v~lRp~~vyGp~ 195 (342)
T PLN02214 148 -WSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK-------GVDLVVLNPVLVLGPP 195 (342)
T ss_pred -CCChhhccccccHHHHHHHHHHHHHHHHHHHc-------CCcEEEEeCCceECCC
Confidence 00000000123679999999999997766543 7999999999986653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-09 Score=107.18 Aligned_cols=158 Identities=20% Similarity=0.076 Sum_probs=97.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH-----------------------hc------C
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-----------------------DR------A 235 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~-----------------------~~------~ 235 (484)
+++++|||||+|+||++++++|+++ |++|++++|+.+..+.....+. .. .
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 6788999999999999999999998 8999998887654433222210 00 1
Q ss_pred CC---Cc--cHHHH-----HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccch----HHHHHHHhhccccc
Q psy8786 236 ST---VP--FAIQA-----EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN----LELKKRLRQLREPV 301 (484)
Q Consensus 236 ~~---~~--~~~~~-----~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~----~~~~~~~~~~~~~~ 301 (484)
.. .. ...+. ...+++|+.|+.++++++.+.. ..+++|++||.+.++..... ...++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~------- 159 (353)
T PLN02896 88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTSSISTLTAKDSNGRWRAVVDETC------- 159 (353)
T ss_pred ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEechhhccccccCCCCCCccCccc-------
Confidence 00 00 11112 3456667799999999887642 23689999998765422100 0000000
Q ss_pred cccccccccCCCcc-cccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 302 SLRSLNITKEHPRA-HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 302 ~~~~~~~~~~~~~~-~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
..+.. ......+...|+.||.+.+.+++.++++. |+++.++.|+.|..|.
T Consensus 160 ---------~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 160 ---------QTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN-------GIDLVSVITTTVAGPF 210 (353)
T ss_pred ---------CCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc-------CCeEEEEcCCcccCCC
Confidence 00000 00000012579999999999998766543 7999999998887664
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=100.52 Aligned_cols=165 Identities=15% Similarity=0.041 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----CCCCccHHHH---------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----ASTVPFAIQA--------------- 244 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----~~~~~~~~~~--------------- 244 (484)
.++|+++||||+|+||++++++|+++ |++|++..|+.++.++....-... .......+.+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 45689999999999999999999998 899999888866543221110000 0000000111
Q ss_pred --------HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 245 --------EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 245 --------~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
...+++|+.++..+++++.. ...++||++||.+.+......
T Consensus 94 g~~~~~~~~~~~~~n~~~~~~ll~a~~~--~~~~~iV~iSS~~v~g~~~~~----------------------------- 142 (251)
T PLN00141 94 GFRRSFDPFAPWKVDNFGTVNLVEACRK--AGVTRFILVSSILVNGAAMGQ----------------------------- 142 (251)
T ss_pred CCCcCCCCCCceeeehHHHHHHHHHHHH--cCCCEEEEEccccccCCCccc-----------------------------
Confidence 11235677778888877643 223789999988643211100
Q ss_pred ccCCCCChhhHHhHHHHHHH-HHHHHHH-hhhhcCCCCeEEEEEeCCcccCCCccCC-----------CCCCHHhHHHHH
Q psy8786 317 VAKGWPDSAYAVSKIGVNLL-TRIYQKK-FDCELGNQDKVINAVHPGYVATNMSSFM-----------GNVNIFDDSSTF 383 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~l-t~~LA~e-la~~~~~~gIrVNaV~PG~V~T~m~~~~-----------~~~~peevA~~~ 383 (484)
+....|...|.....+ .+..+.+ +... |++++.|+||++.++..... ...+++|+|+.+
T Consensus 143 ----~~~~~~~~~~~~~~~~~~k~~~e~~l~~~----gi~~~iirpg~~~~~~~~~~~~~~~~~~~~~~~i~~~dvA~~~ 214 (251)
T PLN00141 143 ----ILNPAYIFLNLFGLTLVAKLQAEKYIRKS----GINYTIVRPGGLTNDPPTGNIVMEPEDTLYEGSISRDQVAEVA 214 (251)
T ss_pred ----ccCcchhHHHHHHHHHHHHHHHHHHHHhc----CCcEEEEECCCccCCCCCceEEECCCCccccCcccHHHHHHHH
Confidence 0013455555433322 2222222 2333 89999999999977643210 126889999988
Q ss_pred HHHHh
Q psy8786 384 NAFER 388 (484)
Q Consensus 384 ~~L~s 388 (484)
..++.
T Consensus 215 ~~~~~ 219 (251)
T PLN00141 215 VEALL 219 (251)
T ss_pred HHHhc
Confidence 87764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-09 Score=105.61 Aligned_cols=156 Identities=19% Similarity=0.084 Sum_probs=96.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH--HH----------hc------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV--LK----------DR------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~--l~----------~~------------------ 234 (484)
+||++|||||+|+||++++++|+++ |.+|++++|+.+........ .. .+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQR-GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHC-CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 4689999999999999999999999 88999888876532211110 00 00
Q ss_pred --CC-CCc-cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc--ccccc-ch-HHHHHHHhhcccccccccc
Q psy8786 235 --AS-TVP-FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG--HLSQI-TN-LELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 --~~-~~~-~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag--~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 306 (484)
.. ... ..+..+..+++|+.|+.++++++.... ...++|++||.+. +.... .. ...++..
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~------------ 148 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVP-SVKRVVVTSSMAAVAYNGKPLTPDVVVDETW------------ 148 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEccCHHHhcCCCcCCCCCCcCCccc------------
Confidence 00 000 011224678999999999999887532 2358999999764 21110 00 0000000
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.............|+.||.+.+.+++.++++. |++++.++|+.+..|.
T Consensus 149 ------~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~lRp~~v~Gp~ 196 (322)
T PLN02662 149 ------FSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN-------GIDMVTINPAMVIGPL 196 (322)
T ss_pred ------CCChhHhhcccchHHHHHHHHHHHHHHHHHHc-------CCcEEEEeCCcccCCC
Confidence 00000000001479999999998887665432 7999999999998775
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-09 Score=106.46 Aligned_cols=148 Identities=17% Similarity=0.112 Sum_probs=91.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----HHHHH-------------------------HHHHh---
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----GAEAV-------------------------QVLKD--- 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----~~~~~-------------------------~~l~~--- 233 (484)
|++|||||+|+||++++++|+++ |++|++++|+.+. .+... +.+..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 79 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK-GYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP 79 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC-CCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence 68999999999999999999998 8999999887431 11111 01111
Q ss_pred c-----CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHh-hhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 234 R-----AST---VPFAIQAEKTILTNYLGLVRTCVFLFPL-LRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 234 ~-----~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~-l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+ ... ....+..+..+++|+.|+.++++++.+. +++..++|++||...++......
T Consensus 80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~---------------- 143 (343)
T TIGR01472 80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIP---------------- 143 (343)
T ss_pred CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCC----------------
Confidence 0 000 0111233566788999999999998763 22234899999976544221100
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG 361 (484)
.. ... ...|...|+.||.+.+.+++.+++++.-.. ..++.+|...||
T Consensus 144 ---~~----E~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~-~~~~~~~~~gp~ 190 (343)
T TIGR01472 144 ---QN----ETT--PFYPRSPYAAAKLYAHWITVNYREAYGLFA-VNGILFNHESPR 190 (343)
T ss_pred ---CC----CCC--CCCCCChhHHHHHHHHHHHHHHHHHhCCce-EEEeecccCCCC
Confidence 00 000 011337899999999999999887653210 012344556665
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=108.56 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=108.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.++||+++||||+|-||.++|+++++.+..++++.+|++.+......+++..
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 4799999999999999999999999986668999999998887777666652
Q ss_pred --------CCCCc-cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 --------ASTVP-FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 --------~~~~~-~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
....| .+......+.+|++|+.++++++... +-.++|.+|+--+...
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~--~V~~~V~iSTDKAV~P---------------------- 382 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN--GVKKFVLISTDKAVNP---------------------- 382 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh--CCCEEEEEecCcccCC----------------------
Confidence 00111 23566788999999999999998763 2368999998765321
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
-..|++||...+.++.+++.+.... +-++.+|.=|.|-
T Consensus 383 -----------------tNvmGaTKr~aE~~~~a~~~~~~~~----~T~f~~VRFGNVl 420 (588)
T COG1086 383 -----------------TNVMGATKRLAEKLFQAANRNVSGT----GTRFCVVRFGNVL 420 (588)
T ss_pred -----------------chHhhHHHHHHHHHHHHHhhccCCC----CcEEEEEEeccee
Confidence 1679999999999999888766543 5788999988774
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-08 Score=102.85 Aligned_cols=146 Identities=13% Similarity=-0.015 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH----HHHH------------------------HHHHh-
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG----AEAV------------------------QVLKD- 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~----~~~~------------------------~~l~~- 233 (484)
+|++|+++||||+|+||++++++|+++ |.+|++++|..... ++.. +.+..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-GYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 467899999999999999999999998 88998887642111 1100 00110
Q ss_pred --c-----CC---CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 234 --R-----AS---TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 234 --~-----~~---~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
+ .. ......+.+..+++|+.++.++++++... ...++|++||...++..... ..
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss~~vyg~~~~~-~~------------- 144 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH--GCKKLVFSSSATVYGQPEEV-PC------------- 144 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEccHHHhCCCCCC-CC-------------
Confidence 0 00 01122355678999999999998876432 23589999986444321100 00
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
. ... ...+...|+.||.+.+.+++.++.+. . ++++..+.++.
T Consensus 145 -----~----E~~--~~~~~~~Y~~sK~~~e~~~~~~~~~~--~----~~~~~~~R~~~ 186 (352)
T PLN02240 145 -----T----EEF--PLSATNPYGRTKLFIEEICRDIHASD--P----EWKIILLRYFN 186 (352)
T ss_pred -----C----CCC--CCCCCCHHHHHHHHHHHHHHHHHHhc--C----CCCEEEEeecC
Confidence 0 000 00123689999999999998777531 1 56667776543
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-09 Score=111.67 Aligned_cols=147 Identities=17% Similarity=0.068 Sum_probs=108.7
Q ss_pred EEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH-HHHHhc---CCCCccHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy8786 190 VVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-QVLKDR---ASTVPFAIQAEKTILTNYLGLVRTCVFLFPL 265 (484)
Q Consensus 190 LITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~-~~l~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~allp~ 265 (484)
+|+||++|+|.++++.+... |+.|+.+.+..++..... ..+... .....+.++ +.+.+.+++.+++.
T Consensus 42 ~l~~~~~g~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------l~~~~~~~~~~l~~ 112 (450)
T PRK08261 42 VLVGGAGRLAEALAALLAGL-GYDVVANNDGGLTWAAGWGDRFGALVFDATGITDPAD--------LKALYEFFHPVLRS 112 (450)
T ss_pred eEEccCchhHHHHHHHHhhC-CCeeeecCccccccccCcCCcccEEEEECCCCCCHHH--------HHHHHHHHHHHHHh
Confidence 47788899999999999988 899988776554211000 001100 111112222 34556778888888
Q ss_pred hhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh
Q psy8786 266 LRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345 (484)
Q Consensus 266 l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela 345 (484)
|.++|+||+++|..+.. . ...|+++|+|+.+++|++++|+
T Consensus 113 l~~~griv~i~s~~~~~--~-------------------------------------~~~~~~akaal~gl~rsla~E~- 152 (450)
T PRK08261 113 LAPCGRVVVLGRPPEAA--A-------------------------------------DPAAAAAQRALEGFTRSLGKEL- 152 (450)
T ss_pred ccCCCEEEEEccccccC--C-------------------------------------chHHHHHHHHHHHHHHHHHHHh-
Confidence 88889999999876531 1 1469999999999999999999
Q ss_pred hhcCCCCeEEEEEeCCcccCCCccCCCCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 346 CELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 346 ~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
++ ||++|+|.|+. ..+++++..+.|++++.+.+++|+.+.
T Consensus 153 ~~----gi~v~~i~~~~-----------~~~~~~~~~~~~l~s~~~a~~~g~~i~ 192 (450)
T PRK08261 153 RR----GATAQLVYVAP-----------GAEAGLESTLRFFLSPRSAYVSGQVVR 192 (450)
T ss_pred hc----CCEEEEEecCC-----------CCHHHHHHHHHHhcCCccCCccCcEEE
Confidence 55 89999999986 468899999999999999999999884
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=103.82 Aligned_cols=161 Identities=14% Similarity=0.042 Sum_probs=96.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH----------hc-----------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK----------DR----------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~----------~~----------------- 234 (484)
.+.++|+||||||+|+||++++++|+++ |++|+++.|+.+..++.. ++. ..
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 3457899999999999999999999999 899988888765443321 110 00
Q ss_pred ---------CC-CCccH--HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc--cccccchHHHHHHHhhcccc
Q psy8786 235 ---------AS-TVPFA--IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG--HLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 ---------~~-~~~~~--~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag--~~~~~~~~~~~~~~~~~~~~ 300 (484)
.. ..... .......++|+.++.++++++...- .-.++|++||..+ ++......
T Consensus 127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~-~v~r~V~~SS~~~~vyg~~~~~~------------ 193 (367)
T PLN02686 127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTE-SVRKCVFTSSLLACVWRQNYPHD------------ 193 (367)
T ss_pred HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcC-CccEEEEeccHHHhcccccCCCC------------
Confidence 00 00000 0113445678888888888765421 1248999999642 21100000
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
... .++............+...|+.||.+.+.+++.++++ + |+++++|+|+.|..|.
T Consensus 194 --~~~-~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~----gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 194 --LPP-VIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARG---K----GLKLATICPALVTGPG 250 (367)
T ss_pred --CCc-ccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHh---c----CceEEEEcCCceECCC
Confidence 000 0000000000000112357999999999999877654 2 8999999999998885
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=103.26 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=91.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchh--H----------------------HHHHHHHHh---c----
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKK--G----------------------AEAVQVLKD---R---- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~--~----------------------~~~~~~l~~---~---- 234 (484)
|++|||||+|+||++++++|+++ |+. |++.+|..+. . +...+.+.+ +
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINE-TSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHc-CCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 57999999999999999999998 665 4455543210 0 011111111 0
Q ss_pred -CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhh------c-CCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 235 -AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLR------R-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 235 -~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~------~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
... ....++++..+++|+.|++++++++.+.+. + ..++|++||.+.++.......
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-------------- 146 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDD-------------- 146 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCC--------------
Confidence 111 112245678999999999999999987531 1 248999998765432110000
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+.. . ....+...|+.||.+.+.+++.+++++ |+++..+.|+.+--|
T Consensus 147 ---~~~E----~--~~~~p~s~Y~~sK~~~e~~~~~~~~~~-------~~~~~i~r~~~v~Gp 193 (355)
T PRK10217 147 ---FFTE----T--TPYAPSSPYSASKASSDHLVRAWLRTY-------GLPTLITNCSNNYGP 193 (355)
T ss_pred ---CcCC----C--CCCCCCChhHHHHHHHHHHHHHHHHHh-------CCCeEEEeeeeeeCC
Confidence 0000 0 001123789999999999999887754 677777777766433
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=103.79 Aligned_cols=150 Identities=14% Similarity=0.034 Sum_probs=97.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH----HHH-------------------------HHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA----EAV-------------------------QVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~----~~~-------------------------~~l~ 232 (484)
..+++|+++||||+|-||..++++|.++ |.+|++++|...... +.. +.++
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 3467899999999999999999999998 889999887432111 000 0001
Q ss_pred hc------CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 233 DR------AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 233 ~~------~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
+. ... ....++....+++|+.|+.++++++... .-.++|++||...++...... .
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~--~~~~~v~~SS~~vyg~~~~~~-~------------- 153 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA--HVSSFTYAASSSTYGDHPDLP-K------------- 153 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEeechHhhCCCCCCC-C-------------
Confidence 00 100 0111334567899999999999887542 225899999876543211100 0
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.. . ....|...|+.||.+.+.+++.++.+. |+++..+.|+.|--|
T Consensus 154 -----~e----~--~~~~p~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~lR~~~vyGp 198 (348)
T PRK15181 154 -----IE----E--RIGRPLSPYAVTKYVNELYADVFARSY-------EFNAIGLRYFNVFGR 198 (348)
T ss_pred -----CC----C--CCCCCCChhhHHHHHHHHHHHHHHHHh-------CCCEEEEEecceeCc
Confidence 00 0 001133689999999999887765532 799999999988665
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.6e-08 Score=98.27 Aligned_cols=148 Identities=17% Similarity=0.098 Sum_probs=89.7
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCchhH---HHHHHHHHh-----------c------CCCC----cc-
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKKKG---AEAVQVLKD-----------R------ASTV----PF- 240 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~~~---~~~~~~l~~-----------~------~~~~----~~- 240 (484)
+|+||||+|+||++++++|+++ | .+|+++.|+.+.. +...+.+.. . .... ..
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~-g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRR-STQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhC-CCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 4899999999999999999998 6 6799999976522 111111110 0 0000 00
Q ss_pred ----------------------HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 241 ----------------------AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 241 ----------------------~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
...++...++|+.|+..+++++... ...+++++||...+....... ..
T Consensus 80 ~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~--~~~~~v~iSS~~v~~~~~~~~-~~------- 149 (367)
T TIGR01746 80 AEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASG--RAKPLHYVSTISVLAAIDLST-VT------- 149 (367)
T ss_pred HHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhC--CCceEEEEccccccCCcCCCC-cc-------
Confidence 0123445678999999988877652 224699999987643211100 00
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
..... .. ....+...|+.||.+.+.+++.++ .. |++++.++||.+..+
T Consensus 150 ---------~~~~~-~~--~~~~~~~~Y~~sK~~~E~~~~~~~----~~----g~~~~i~Rpg~v~G~ 197 (367)
T TIGR01746 150 ---------EDDAI-VT--PPPGLAGGYAQSKWVAELLVREAS----DR----GLPVTIVRPGRILGN 197 (367)
T ss_pred ---------ccccc-cc--cccccCCChHHHHHHHHHHHHHHH----hc----CCCEEEECCCceeec
Confidence 00000 00 000012579999999998886543 23 899999999999764
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=98.39 Aligned_cols=147 Identities=15% Similarity=0.090 Sum_probs=92.8
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCc-----hhHH-------------------HHHHHHHh---c-----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDK-----KKGA-------------------EAVQVLKD---R----- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~-----~~~~-------------------~~~~~l~~---~----- 234 (484)
+++||||+|+||.+++++|+++++ .+|++.+|.. +..+ ...+.++. +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 389999999999999999999832 5788776531 1111 11111111 1
Q ss_pred CC---CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 AS---TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~---~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
.. .....+..+..+++|+.++..+++++..... ..++|++||...++........ ..
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~i~~Ss~~v~g~~~~~~~~------------------~e- 140 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWH-EFRFHHISTDEVYGDLEKGDAF------------------TE- 140 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCC-CceEEEeeccceeCCCCCCCCc------------------CC-
Confidence 10 0112245567789999999999998876543 3589999986643321110000 00
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
. ....+...|+.+|.+.+.+++.++.+. ++++..+.|+.+..+
T Consensus 141 ---~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~i~R~~~i~G~ 183 (317)
T TIGR01181 141 ---T--TPLAPSSPYSASKAASDHLVRAYHRTY-------GLPALITRCSNNYGP 183 (317)
T ss_pred ---C--CCCCCCCchHHHHHHHHHHHHHHHHHh-------CCCeEEEEeccccCC
Confidence 0 001123679999999999998877653 789999999987654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.4e-08 Score=89.34 Aligned_cols=129 Identities=19% Similarity=0.133 Sum_probs=95.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc---hhHHHHHHHHHhc------------------------------
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK---KKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~---~~~~~~~~~l~~~------------------------------ 234 (484)
++|||||.+|||..+|+.|++++..+|++++|+. ...++..++++..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 6899999999999999999999666899999982 2334455555543
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhccc
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~ 299 (484)
.....+.++++.++...+.|..++.+++.+ .+-..+|.+||+++ .+.+.
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~--~~l~~~i~~SSis~~~G~~g-------------- 145 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN--RPLDFFILFSSISSLLGGPG-------------- 145 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT--TTTSEEEEEEEHHHHTT-TT--------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc--CCCCeEEEECChhHhccCcc--------------
Confidence 122344578899999999999999887765 33478899999988 44443
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
+..|+++.+.++.|++.... . |..+.+|+-|..
T Consensus 146 -----------------------q~~YaaAN~~lda~a~~~~~----~----g~~~~sI~wg~W 178 (181)
T PF08659_consen 146 -----------------------QSAYAAANAFLDALARQRRS----R----GLPAVSINWGAW 178 (181)
T ss_dssp -----------------------BHHHHHHHHHHHHHHHHHHH----T----TSEEEEEEE-EB
T ss_pred -----------------------hHhHHHHHHHHHHHHHHHHh----C----CCCEEEEEcccc
Confidence 38999999999988875443 3 778888887764
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-08 Score=91.94 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||+++||||++|||+++|+.|+++ |++|++++|+.+.+++..+++...
T Consensus 11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~-G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45679999999999999999999999998 899999999877665554444321
Q ss_pred ------------CC---CCccHH-HHHHHHHhhhHHHHHHHHHHHHhhhcC---------CEEEEEeCCCc
Q psy8786 235 ------------AS---TVPFAI-QAEKTILTNYLGLVRTCVFLFPLLRRH---------ARVVNLSSSAG 280 (484)
Q Consensus 235 ------------~~---~~~~~~-~~~~~~~vN~~g~~~l~~allp~l~~~---------grIV~iSS~ag 280 (484)
+. .....+ ..+....+|+.+++.+++.+.+++.++ ||+..||+.+.
T Consensus 90 ~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 90 AFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred HcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 00 011111 111122678888899999998887542 78888887665
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-08 Score=100.39 Aligned_cols=149 Identities=18% Similarity=0.054 Sum_probs=95.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH------------------HHHHHHhc-------CCCCccH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE------------------AVQVLKDR-------ASTVPFA 241 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~------------------~~~~l~~~-------~~~~~~~ 241 (484)
++++||||+|+||+.+++.|+++ |++|++++|+.+.... ..+.+... .......
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~~~ 79 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYRLWA 79 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-CCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecccCC
Confidence 35999999999999999999998 8899999997553221 11111110 0011112
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 242 ~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
+..+..+++|+.++..+++++... ..+++|++||...+..........+. .. .....
T Consensus 80 ~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~~~e~------------------~~---~~~~~ 136 (328)
T TIGR03466 80 PDPEEMYAANVEGTRNLLRAALEA--GVERVVYTSSVATLGVRGDGTPADET------------------TP---SSLDD 136 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEEechhhcCcCCCCCCcCcc------------------CC---CCccc
Confidence 346678899999999999987653 23699999998764321110000000 00 00000
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 322 ~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
....|+.+|.+.+.+++.++.+. |+++..+.|+.+..+
T Consensus 137 ~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~ilR~~~~~G~ 174 (328)
T TIGR03466 137 MIGHYKRSKFLAEQAALEMAAEK-------GLPVVIVNPSTPIGP 174 (328)
T ss_pred ccChHHHHHHHHHHHHHHHHHhc-------CCCEEEEeCCccCCC
Confidence 12579999999999998776542 789999999877543
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-08 Score=99.44 Aligned_cols=131 Identities=22% Similarity=0.188 Sum_probs=95.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------------
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------------- 234 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------------- 234 (484)
||||||+|-||.++|++|++.+...|++++|++.++-+...++...
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 6999999999999999999985568999999999888877777421
Q ss_pred ----CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 235 ----ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 ----~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
+.... .+......+++|+.|+.++++++..+ .-.++|++|+--+..
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~--~v~~~v~ISTDKAv~------------------------- 133 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH--GVERFVFISTDKAVN------------------------- 133 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT--T-SEEEEEEECGCSS-------------------------
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEccccccCC-------------------------
Confidence 00000 01234567889999999999998874 236999999876532
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
|...|++||.-.+.++...+...... +.++.+|.=|.|.
T Consensus 134 --------------PtnvmGatKrlaE~l~~~~~~~~~~~----~t~f~~VRFGNVl 172 (293)
T PF02719_consen 134 --------------PTNVMGATKRLAEKLVQAANQYSGNS----DTKFSSVRFGNVL 172 (293)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHCCTSSSS------EEEEEEE-EET
T ss_pred --------------CCcHHHHHHHHHHHHHHHHhhhCCCC----CcEEEEEEeccee
Confidence 11689999999999998777654333 6899999998774
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=95.47 Aligned_cols=145 Identities=17% Similarity=0.062 Sum_probs=88.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH------------------------H-HHHh---c-----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV------------------------Q-VLKD---R----- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~------------------------~-~l~~---~----- 234 (484)
+++||||+|+||++++++|+++ |.+|++++|......... + .+.. +
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN-GHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC-CCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 4999999999999999999998 889988875422111100 0 0110 0
Q ss_pred CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
... ....+.....+++|+.++..+++++... ...++|++||...++..... .+.+.
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss~~~yg~~~~~-~~~E~------------------ 139 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA--NVKNLIFSSSATVYGDQPKI-PYVES------------------ 139 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccHHhhCCCCCC-ccccc------------------
Confidence 000 0111234567889999999988876542 23589999997544321100 00000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
. ..+.+...|+.+|.+.+.+++.++++.. ++++..+.++.+..
T Consensus 140 ~-----~~~~p~~~Y~~sK~~~E~~~~~~~~~~~------~~~~~ilR~~~v~g 182 (338)
T PRK10675 140 F-----PTGTPQSPYGKSKLMVEQILTDLQKAQP------DWSIALLRYFNPVG 182 (338)
T ss_pred c-----CCCCCCChhHHHHHHHHHHHHHHHHhcC------CCcEEEEEeeeecC
Confidence 0 0001237899999999999988775431 56777777655543
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=98.04 Aligned_cols=170 Identities=13% Similarity=0.065 Sum_probs=94.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH-------------------------HHHHhc----
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-------------------------QVLKDR---- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~-------------------------~~l~~~---- 234 (484)
++.++||||||+|.||+.++++|+++++.+|++++|+.++..... +.+.+.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 466789999999999999999999984578998888654322211 111110
Q ss_pred --CCC-Cc--cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 --AST-VP--FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 --~~~-~~--~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
... .. ........+..|+.++.++++++... +.++|++||...++..... ...+... ..... ......
T Consensus 92 HlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~---~~r~v~~SS~~vYg~~~~~-~~~e~~p--~~~~~-~~~~~~ 164 (386)
T PLN02427 92 NLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN---NKRLIHFSTCEVYGKTIGS-FLPKDHP--LRQDP-AFYVLK 164 (386)
T ss_pred EcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc---CCEEEEEeeeeeeCCCcCC-CCCcccc--ccccc-cccccc
Confidence 100 01 11122345678999999988877542 3689999997654321110 0000000 00000 000000
Q ss_pred cCCC-cccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 310 KEHP-RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 310 ~~~~-~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.... ........+...|+.||.+.+.+++.++.. . |+.+..+.|+.|..+-
T Consensus 165 e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~----g~~~~ilR~~~vyGp~ 216 (386)
T PLN02427 165 EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE---N----GLEFTIVRPFNWIGPR 216 (386)
T ss_pred ccccccccCCCCccccchHHHHHHHHHHHHHHHhh---c----CCceEEecccceeCCC
Confidence 0000 000000012257999999999988765542 2 7999999998887653
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=96.44 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=89.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCc--hhHH----------------------HHHHHHHh---c-----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDK--KKGA----------------------EAVQVLKD---R----- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~--~~~~----------------------~~~~~l~~---~----- 234 (484)
++|||||+|+||++++++|+++ |.. |+.+++.. ...+ ...+.+.. +
T Consensus 2 kilITGgtG~iG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINN-TQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHh-CCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 4999999999999999999998 554 55444421 0100 11111111 0
Q ss_pred CCC---CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------CCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 AST---VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ~~~---~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-------~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
... .......+..+++|+.|+.++++++.+.+++ ..++|++||...++......+... .....
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~-------~~~~~ 153 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVEN-------SEELP 153 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccc-------cccCC
Confidence 101 1112345778999999999999999876531 248999998765432110000000 00000
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
. +.. . ....|...|+.||.+.+.+++.+++++ |+++..+.|+.|.-
T Consensus 154 ~--~~E----~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------g~~~vilr~~~v~G 199 (352)
T PRK10084 154 L--FTE----T--TAYAPSSPYSASKASSDHLVRAWLRTY-------GLPTIVTNCSNNYG 199 (352)
T ss_pred C--ccc----c--CCCCCCChhHHHHHHHHHHHHHHHHHh-------CCCEEEEeccceeC
Confidence 0 000 0 011234789999999999999887764 55666666665543
|
|
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-07 Score=79.87 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=117.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEE--------------ecCch---hHHHHHHHHHhc---------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLT--------------ARDKK---KGAEAVQVLKDR--------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~--------------~R~~~---~~~~~~~~l~~~--------------- 234 (484)
.+|+|-||-+.+|.+++..|-++ ++-|.-+ +++.. ..+...+++.+.
T Consensus 4 grVivYGGkGALGSacv~~Fkan-nywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CVAGG 82 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKAN-NYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCVAGG 82 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhc-CeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccceEEEeecc
Confidence 56899999999999999999887 6655433 33322 122222332221
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
..........+.++.-.+.....-.+.+-.+++++|-+-....-++. +.|..
T Consensus 83 WAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPgM---------------------- 140 (236)
T KOG4022|consen 83 WAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPGM---------------------- 140 (236)
T ss_pred ccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCcc----------------------
Confidence 11122335666777777777777777777888887766555444442 33332
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-------CCHHhHHH
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-------VNIFDDSS 381 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-------~~peevA~ 381 (484)
..|+++|+|+++++++|+.+-..- +.|--+.+|-|=..+|||.+.+.+ ..-+.+++
T Consensus 141 ---------------IGYGMAKaAVHqLt~SLaak~SGl--P~gsaa~~ilPVTLDTPMNRKwMP~ADfssWTPL~fi~e 203 (236)
T KOG4022|consen 141 ---------------IGYGMAKAAVHQLTSSLAAKDSGL--PDGSAALTILPVTLDTPMNRKWMPNADFSSWTPLSFISE 203 (236)
T ss_pred ---------------cchhHHHHHHHHHHHHhcccccCC--CCCceeEEEeeeeccCccccccCCCCcccCcccHHHHHH
Confidence 789999999999999999764321 347788999999999999998755 45567888
Q ss_pred HHHHHHhhhcccccccccc
Q psy8786 382 TFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 382 ~~~~L~s~~a~~itG~~i~ 400 (484)
.++....+..+--+|..++
T Consensus 204 ~flkWtt~~~RPssGsLlq 222 (236)
T KOG4022|consen 204 HFLKWTTETSRPSSGSLLQ 222 (236)
T ss_pred HHHHHhccCCCCCCCceEE
Confidence 7777776666666776654
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=97.66 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=95.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH-HHHH-----------------HHh-c-----CC
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE-AVQV-----------------LKD-R-----AS 236 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~-~~~~-----------------l~~-~-----~~ 236 (484)
.+.-++|+||||||+|.||+.++++|+++ |.+|++++|......+ .... +.+ + ..
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa 192 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLAC 192 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHC-cCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeee
Confidence 34457889999999999999999999998 8899988764221111 1000 000 0 10
Q ss_pred -CC--ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCC
Q psy8786 237 -TV--PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313 (484)
Q Consensus 237 -~~--~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (484)
.. ....+.+..+++|+.++.++++++... +.++|++||...++....... .+... ..
T Consensus 193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~---g~r~V~~SS~~VYg~~~~~p~-~E~~~-------------~~--- 252 (442)
T PLN02206 193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQ-VETYW-------------GN--- 252 (442)
T ss_pred ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh---CCEEEEECChHHhCCCCCCCC-Ccccc-------------cc---
Confidence 00 111234678899999999999987653 358999999765532211000 00000 00
Q ss_pred cccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 314 ~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.....+...|+.||.+.+.+++.+.++. |+++..+.|+.+.-+
T Consensus 253 ---~~P~~~~s~Y~~SK~~aE~~~~~y~~~~-------g~~~~ilR~~~vyGp 295 (442)
T PLN02206 253 ---VNPIGVRSCYDEGKRTAETLTMDYHRGA-------NVEVRIARIFNTYGP 295 (442)
T ss_pred ---CCCCCccchHHHHHHHHHHHHHHHHHHh-------CCCeEEEEeccccCC
Confidence 0000012679999999999887765542 688888888766543
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=90.58 Aligned_cols=145 Identities=16% Similarity=0.080 Sum_probs=91.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecC-----chhHHH------------------HHHHHHhc--------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD-----KKKGAE------------------AVQVLKDR-------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~-----~~~~~~------------------~~~~l~~~-------- 234 (484)
+++|||||+|.||.+.++.+.++... +|+.+|.- .+.+.. .+.++-..
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 45999999999999999999997443 36666542 111111 11111110
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
.....+..+.+..+++|+.|++.+++++..+..+ -|++.||.--.++......+
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~-frf~HISTDEVYG~l~~~~~--------------------- 138 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK-FRFHHISTDEVYGDLGLDDD--------------------- 138 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhccc-ceEEEeccccccccccCCCC---------------------
Confidence 1122233556678899999999999998876532 48999988665443222100
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
...... ..-|.++|++||||-.+|++++.+.+ |+.++...+--
T Consensus 139 ~FtE~t--p~~PsSPYSASKAasD~lVray~~TY-------glp~~ItrcSN 181 (340)
T COG1088 139 AFTETT--PYNPSSPYSASKAASDLLVRAYVRTY-------GLPATITRCSN 181 (340)
T ss_pred CcccCC--CCCCCCCcchhhhhHHHHHHHHHHHc-------CCceEEecCCC
Confidence 000111 11245899999999999999998876 77777666543
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=93.02 Aligned_cols=153 Identities=20% Similarity=0.100 Sum_probs=93.2
Q ss_pred EEEcCCchHHHHHHHHHHhcCC--CeEEEEecCchhHH-HHHHH--------------------HHhc------CCCC-c
Q psy8786 190 VVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKKKGA-EAVQV--------------------LKDR------ASTV-P 239 (484)
Q Consensus 190 LITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~~~~-~~~~~--------------------l~~~------~~~~-~ 239 (484)
|||||+|.||++++++|+++ | ..|.+.++...... ..... +++. .... .
T Consensus 1 LVTGgsGflG~~iv~~Ll~~-g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~ 79 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLER-GYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP 79 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHC-CCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence 69999999999999999999 6 57888887654211 11111 1100 1111 1
Q ss_pred c-HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 240 F-AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 240 ~-~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
. ....+..+++|+.|+.++++++... .-.++|++||...........++. ..... ..+
T Consensus 80 ~~~~~~~~~~~vNV~GT~nvl~aa~~~--~VkrlVytSS~~vv~~~~~~~~~~---------------~~dE~----~~~ 138 (280)
T PF01073_consen 80 WGDYPPEEYYKVNVDGTRNVLEAARKA--GVKRLVYTSSISVVFDNYKGDPII---------------NGDED----TPY 138 (280)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEcCcceeEeccCCCCcc---------------cCCcC----Ccc
Confidence 1 2456788999999999999988753 236999999998743211000000 00000 000
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHH-HhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQK-KFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~-ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...+...|+.||+.-+.++..... ++. . ...++..+|+|..|.-|-
T Consensus 139 ~~~~~~~Y~~SK~~AE~~V~~a~~~~~~-~--g~~l~t~~lRP~~IyGp~ 185 (280)
T PF01073_consen 139 PSSPLDPYAESKALAEKAVLEANGSELK-N--GGRLRTCALRPAGIYGPG 185 (280)
T ss_pred cccccCchHHHHHHHHHHHHhhcccccc-c--ccceeEEEEeccEEeCcc
Confidence 011236899999999988865432 111 1 114899999999886653
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-07 Score=90.68 Aligned_cols=144 Identities=15% Similarity=0.021 Sum_probs=89.9
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH-----------------------Hhc---------CC
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-----------------------KDR---------AS 236 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l-----------------------~~~---------~~ 236 (484)
+|||||+|+||++++++|+++ |.+|++.+|......+....+ ... +.
T Consensus 2 vlV~GatG~iG~~l~~~l~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 2 ILVTGGAGYIGSHTVRQLLES-GHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred EEEeCCCCHHHHHHHHHHHhC-CCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 799999999999999999998 888888765322111111111 000 00
Q ss_pred --CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCc
Q psy8786 237 --TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314 (484)
Q Consensus 237 --~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (484)
...........+++|+.++..+++++... ...++|++||...++..... .. ....
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~ss~~~~g~~~~~-~~------------------~e~~-- 137 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQT--GVKKFIFSSSAAVYGEPSSI-PI------------------SEDS-- 137 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhc--CCCEEEEecchhhcCCCCCC-Cc------------------cccC--
Confidence 00111234566788999999998876542 23689998886544322110 00 0000
Q ss_pred ccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 315 ~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...+...|+.+|++++.+++.++++. . ++++..+.|+.+..+
T Consensus 138 ----~~~~~~~y~~sK~~~e~~~~~~~~~~--~----~~~~~ilR~~~v~g~ 179 (328)
T TIGR01179 138 ----PLGPINPYGRSKLMSERILRDLSKAD--P----GLSYVILRYFNVAGA 179 (328)
T ss_pred ----CCCCCCchHHHHHHHHHHHHHHHHhc--c----CCCEEEEecCcccCC
Confidence 00123689999999999998887642 2 789999999877654
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.5e-07 Score=95.13 Aligned_cols=151 Identities=18% Similarity=0.074 Sum_probs=93.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH-------------Hh-----c------CC-CC-
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-------------KD-----R------AS-TV- 238 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l-------------~~-----~------~~-~~- 238 (484)
+.++|+||||+|.||+.++++|+++ |.+|++++|......+....+ .. . .. ..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~ 197 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 197 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceeccc
Confidence 4567999999999999999999998 889999987532111111000 00 0 10 00
Q ss_pred -ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccc
Q psy8786 239 -PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317 (484)
Q Consensus 239 -~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (484)
....+....+++|+.|+.++++++... +.++|++||...++.+.... ..+.. .. ..
T Consensus 198 ~~~~~~p~~~~~~Nv~gT~nLleaa~~~---g~r~V~~SS~~VYg~~~~~p-~~E~~-------------~~------~~ 254 (436)
T PLN02166 198 VHYKYNPVKTIKTNVMGTLNMLGLAKRV---GARFLLTSTSEVYGDPLEHP-QKETY-------------WG------NV 254 (436)
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHHHh---CCEEEEECcHHHhCCCCCCC-CCccc-------------cc------cC
Confidence 111234577889999999999887653 35899998876554321100 00000 00 00
Q ss_pred cCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 318 ~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
....+...|+.||.+.+.+++.+++.. |+.+..+.|+.|--+
T Consensus 255 ~p~~p~s~Yg~SK~~aE~~~~~y~~~~-------~l~~~ilR~~~vYGp 296 (436)
T PLN02166 255 NPIGERSCYDEGKRTAETLAMDYHRGA-------GVEVRIARIFNTYGP 296 (436)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHh-------CCCeEEEEEccccCC
Confidence 000123679999999999998766542 678888887766544
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=82.30 Aligned_cols=144 Identities=21% Similarity=0.154 Sum_probs=93.9
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH------------------HHHH-HHhc--------CCCC---
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE------------------AVQV-LKDR--------ASTV--- 238 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~------------------~~~~-l~~~--------~~~~--- 238 (484)
||||||+|-||.+++++|.++ |..|+...|+...... ..++ +... ....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~ 79 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK-GHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNP 79 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHH
T ss_pred EEEEccCCHHHHHHHHHHHHc-CCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeecccccc
Confidence 799999999999999999999 8887777665442211 1111 1111 1111
Q ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 239 ~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
.........++.|+.+...+++++... +..++|++||...+...... . ... ..
T Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~~i~~sS~~~y~~~~~~-~------------------~~e----~~-- 132 (236)
T PF01370_consen 80 ESFEDPEEIIEANVQGTRNLLEAAREA--GVKRFIFLSSASVYGDPDGE-P------------------IDE----DS-- 132 (236)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHH--TTSEEEEEEEGGGGTSSSSS-S------------------BET----TS--
T ss_pred ccccccccccccccccccccccccccc--cccccccccccccccccccc-c------------------ccc----cc--
Confidence 112455677888988888888877653 22699999996544333110 0 000 00
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...+...|+.+|...+.+.+.+.++. ++++..+.|+.+--+.
T Consensus 133 ~~~~~~~Y~~~K~~~e~~~~~~~~~~-------~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 133 PINPLSPYGASKRAAEELLRDYAKKY-------GLRVTILRPPNVYGPG 174 (236)
T ss_dssp GCCHSSHHHHHHHHHHHHHHHHHHHH-------TSEEEEEEESEEESTT
T ss_pred cccccccccccccccccccccccccc-------cccccccccccccccc
Confidence 00123679999999999998777653 7999999999987766
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=102.21 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=96.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH-------------------HHHH-HHhc-------CCC
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE-------------------AVQV-LKDR-------AST 237 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~-------------------~~~~-l~~~-------~~~ 237 (484)
++|+||||||+|.||.+++++|++++|.+|++++|+...... ..++ +.+. ...
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~ 393 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIA 393 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECcccc
Confidence 578899999999999999999998646899999886542211 0111 1111 001
Q ss_pred Cc--cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcc
Q psy8786 238 VP--FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315 (484)
Q Consensus 238 ~~--~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (484)
.+ .....+..+++|+.++.++++++... +.++|++||...++..... ..++... ...
T Consensus 394 ~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~---~~~~V~~SS~~vyg~~~~~-~~~E~~~-----------------~~~ 452 (660)
T PRK08125 394 TPIEYTRNPLRVFELDFEENLKIIRYCVKY---NKRIIFPSTSEVYGMCTDK-YFDEDTS-----------------NLI 452 (660)
T ss_pred CchhhccCHHHHHHhhHHHHHHHHHHHHhc---CCeEEEEcchhhcCCCCCC-CcCcccc-----------------ccc
Confidence 11 11233467889999999999988763 3689999997655422110 0000000 000
Q ss_pred cccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 316 ~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
......+...|+.||.+.+.+++.+++++ |+++..+.|+.+.-+
T Consensus 453 ~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~-------g~~~~ilR~~~vyGp 496 (660)
T PRK08125 453 VGPINKQRWIYSVSKQLLDRVIWAYGEKE-------GLRFTLFRPFNWMGP 496 (660)
T ss_pred cCCCCCCccchHHHHHHHHHHHHHHHHhc-------CCceEEEEEceeeCC
Confidence 00000123579999999999998776543 788999999887654
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9e-07 Score=90.84 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=91.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH-------------------HHHHhc-------C-CCCc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-------------------QVLKDR-------A-STVP 239 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~-------------------~~l~~~-------~-~~~~ 239 (484)
|+|+||||+|.||+.++++|++++|.+|++++|+.+...... .++.+. . ...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~~ 81 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAIATP 81 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCCh
Confidence 469999999999999999999864678999988654322111 011000 0 0001
Q ss_pred --cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccc
Q psy8786 240 --FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317 (484)
Q Consensus 240 --~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (484)
...+.+..+++|+.++.++++++... +.++|++||...++..... .+.+. .......
T Consensus 82 ~~~~~~p~~~~~~n~~~~~~ll~aa~~~---~~~~v~~SS~~vyg~~~~~-~~~ee-----------------~~~~~~~ 140 (347)
T PRK11908 82 ATYVKQPLRVFELDFEANLPIVRSAVKY---GKHLVFPSTSEVYGMCPDE-EFDPE-----------------ASPLVYG 140 (347)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHhc---CCeEEEEecceeeccCCCc-CcCcc-----------------ccccccC
Confidence 11234567789999999998887653 3699999997654322110 00000 0000000
Q ss_pred cCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 318 ~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
....+...|+.||.+.+.+.+.++.+. |+.+..+.|+.+.-+
T Consensus 141 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~ilR~~~v~Gp 182 (347)
T PRK11908 141 PINKPRWIYACSKQLMDRVIWAYGMEE-------GLNFTLFRPFNWIGP 182 (347)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHc-------CCCeEEEeeeeeeCC
Confidence 000122579999999999988766532 677788888766433
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.1e-07 Score=91.97 Aligned_cols=153 Identities=15% Similarity=0.073 Sum_probs=93.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH------------------HHHHHHHHhc------CCC---
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG------------------AEAVQVLKDR------AST--- 237 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~------------------~~~~~~l~~~------~~~--- 237 (484)
++|+|+||||+|.||+++++.|.++ |.+|++++|..... +...+.+.+. ...
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~ 98 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGG 98 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcccccCC
Confidence 6689999999999999999999998 88999988753210 1111111111 000
Q ss_pred -CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 238 -VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 238 -~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
..........+..|+.++.++++++... .-.++|++||...++......+ .. .+.. ..
T Consensus 99 ~~~~~~~~~~~~~~N~~~t~nll~aa~~~--~vk~~V~~SS~~vYg~~~~~~~------------~~---~~~E----~~ 157 (370)
T PLN02695 99 MGFIQSNHSVIMYNNTMISFNMLEAARIN--GVKRFFYASSACIYPEFKQLET------------NV---SLKE----SD 157 (370)
T ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHh--CCCEEEEeCchhhcCCccccCc------------CC---CcCc----cc
Confidence 0011123445678999999998877542 1258999999765432211000 00 0000 00
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.....|...|+.+|.+.+.+++.++..+ |+++..+.|+.|..|
T Consensus 158 ~~p~~p~s~Yg~sK~~~E~~~~~~~~~~-------g~~~~ilR~~~vyGp 200 (370)
T PLN02695 158 AWPAEPQDAYGLEKLATEELCKHYTKDF-------GIECRIGRFHNIYGP 200 (370)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHh-------CCCEEEEEECCccCC
Confidence 0001123689999999999998766543 789999999887665
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-06 Score=85.13 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=88.1
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh---c-----CCC---CccHHHHHHHHHhhhHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD---R-----AST---VPFAIQAEKTILTNYLG 254 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~---~-----~~~---~~~~~~~~~~~~vN~~g 254 (484)
++||||+|.||.+++++|.++ |.+|++++|+.- +.+...+.+.. + ... .......+..+++|+.+
T Consensus 2 ilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~ 80 (287)
T TIGR01214 2 ILITGANGQLGRELVQQLSPE-GRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALA 80 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHH
Confidence 799999999999999999998 899999888522 22223333332 1 110 01112456678999999
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHH
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~ 334 (484)
+..+++++... +.++|++||...+...... .+. + . ....+...|+.+|.+.+
T Consensus 81 ~~~l~~~~~~~---~~~~v~~Ss~~vy~~~~~~-~~~-------E-----------~------~~~~~~~~Y~~~K~~~E 132 (287)
T TIGR01214 81 PQNLARAAARH---GARLVHISTDYVFDGEGKR-PYR-------E-----------D------DATNPLNVYGQSKLAGE 132 (287)
T ss_pred HHHHHHHHHHc---CCeEEEEeeeeeecCCCCC-CCC-------C-----------C------CCCCCcchhhHHHHHHH
Confidence 99999887542 3589999997544321100 000 0 0 00112368999999998
Q ss_pred HHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 335 ~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+++.+ +.++..+.|+.|..+
T Consensus 133 ~~~~~~-----------~~~~~ilR~~~v~G~ 153 (287)
T TIGR01214 133 QAIRAA-----------GPNALIVRTSWLYGG 153 (287)
T ss_pred HHHHHh-----------CCCeEEEEeeecccC
Confidence 877532 346788888887544
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=87.29 Aligned_cols=142 Identities=17% Similarity=0.108 Sum_probs=85.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH------H-----H------HHHHHH------h-c-----CC-CC
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG------A-----E------AVQVLK------D-R-----AS-TV 238 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~------~-----~------~~~~l~------~-~-----~~-~~ 238 (484)
|+||||+|.||++++++|+++ |..|+++.|+.... . + ..+.+. + + .. ..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~ 80 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSS 80 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC-CCceEEEecCCCcchHHHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecC
Confidence 799999999999999999998 77555544332110 0 0 111110 0 0 00 00
Q ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 239 ~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
....+.+..+++|+.++.++++++... +.++|++||.+.++..... .. .. . .
T Consensus 81 ~~~~~~~~~~~~n~~~t~~ll~~~~~~---~~~~i~~SS~~vyg~~~~~-~~------------------~E----~--~ 132 (308)
T PRK11150 81 TTEWDGKYMMDNNYQYSKELLHYCLER---EIPFLYASSAATYGGRTDD-FI------------------EE----R--E 132 (308)
T ss_pred CcCCChHHHHHHHHHHHHHHHHHHHHc---CCcEEEEcchHHhCcCCCC-CC------------------cc----C--C
Confidence 001122456899999999999987652 3579999988654322110 00 00 0 0
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...|...|+.||.+.+.+++.++.+ . ++.+..+.|+.+--+
T Consensus 133 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~----~~~~~~lR~~~vyG~ 173 (308)
T PRK11150 133 YEKPLNVYGYSKFLFDEYVRQILPE---A----NSQICGFRYFNVYGP 173 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---c----CCCEEEEeeeeecCC
Confidence 0112367999999999988766543 2 688888888776544
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=84.91 Aligned_cols=129 Identities=17% Similarity=0.061 Sum_probs=84.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------hc------------CCC
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------DR------------AST 237 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------~~------------~~~ 237 (484)
++|||||+|=||..+|++|++. |..|++.|.-...-.+.+..++ ++ ...
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V 80 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV 80 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Confidence 5999999999999999999998 8999998864332222222211 10 112
Q ss_pred CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccc
Q psy8786 238 VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317 (484)
Q Consensus 238 ~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (484)
..+.+...+-++.|+.|+..+++++..+= -..|||-||.+.++.+...+ +. ....
T Consensus 81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~g--v~~~vFSStAavYG~p~~~P-------------------I~----E~~~ 135 (329)
T COG1087 81 GESVQNPLKYYDNNVVGTLNLIEAMLQTG--VKKFIFSSTAAVYGEPTTSP-------------------IS----ETSP 135 (329)
T ss_pred chhhhCHHHHHhhchHhHHHHHHHHHHhC--CCEEEEecchhhcCCCCCcc-------------------cC----CCCC
Confidence 22335566788999999999988876531 24667666655566554310 00 0000
Q ss_pred cCCCCChhhHHhHHHHHHHHHHHHHHh
Q psy8786 318 AKGWPDSAYAVSKIGVNLLTRIYQKKF 344 (484)
Q Consensus 318 ~~~~~~~~Y~aSKaAl~~lt~~LA~el 344 (484)
. .|..+|+.||..++.+.+.+++..
T Consensus 136 ~--~p~NPYG~sKlm~E~iL~d~~~a~ 160 (329)
T COG1087 136 L--APINPYGRSKLMSEEILRDAAKAN 160 (329)
T ss_pred C--CCCCcchhHHHHHHHHHHHHHHhC
Confidence 0 133789999999999998888754
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-07 Score=88.81 Aligned_cols=146 Identities=19% Similarity=0.118 Sum_probs=92.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH----------------HHHHHHHh---c-----CCCCccHH--
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA----------------EAVQVLKD---R-----ASTVPFAI-- 242 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~----------------~~~~~l~~---~-----~~~~~~~~-- 242 (484)
||||||+|.||++++++|.++ |..|+.++|...... +...+... + ........
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~~~ 81 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPDSN 81 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEccccCchhhhh
Confidence 999999999999999999998 899999998643221 11111111 1 00011111
Q ss_pred --HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCC
Q psy8786 243 --QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320 (484)
Q Consensus 243 --~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (484)
.....+.+|+.++.++++++.. ....++|+.||.+............+.. ...
T Consensus 82 ~~~~~~~~~~nv~gt~~ll~aa~~--~~~~~~v~~ss~~~~~~~~~~~~~~E~~-----------------------~~~ 136 (314)
T COG0451 82 ASDPAEFLDVNVDGTLNLLEAARA--AGVKRFVFASSVSVVYGDPPPLPIDEDL-----------------------GPP 136 (314)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHH--cCCCeEEEeCCCceECCCCCCCCccccc-----------------------CCC
Confidence 1235889999999999998876 3346888866655443221100000000 011
Q ss_pred CCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 321 WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 321 ~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.|...|+.||.+.+.+++..+. .. |+.+..+.|+.+--+.
T Consensus 137 ~p~~~Yg~sK~~~E~~~~~~~~---~~----~~~~~ilR~~~vyGp~ 176 (314)
T COG0451 137 RPLNPYGVSKLAAEQLLRAYAR---LY----GLPVVILRPFNVYGPG 176 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH---Hh----CCCeEEEeeeeeeCCC
Confidence 1224799999999999987776 23 7999999998775443
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=96.09 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCc--hhHH---------------------HHHHH-HHhc----
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDK--KKGA---------------------EAVQV-LKDR---- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~--~~~~---------------------~~~~~-l~~~---- 234 (484)
.++|+||||||+|.||++++++|++++ +.+|++.+|.. +... +.... +...
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 83 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT 83 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence 356899999999999999999999873 45788877642 1111 01111 1111
Q ss_pred ----CCCCcc---HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 235 ----ASTVPF---AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 ----~~~~~~---~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
...... ..+....+++|+.|+..+++++... ....++|++||...++........
T Consensus 84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~SS~~vyg~~~~~~~~----------------- 145 (668)
T PLN02260 84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVSTDEVYGETDEDADV----------------- 145 (668)
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEcchHHhCCCcccccc-----------------
Confidence 111011 1233466789999999998876542 113589999997654322110000
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.. ... ....|...|+.||.+.+.+++.++.++ ++.+..+.|+.|.-+
T Consensus 146 -~~--~E~--~~~~p~~~Y~~sK~~aE~~v~~~~~~~-------~l~~vilR~~~VyGp 192 (668)
T PLN02260 146 -GN--HEA--SQLLPTNPYSATKAGAEMLVMAYGRSY-------GLPVITTRGNNVYGP 192 (668)
T ss_pred -Cc--ccc--CCCCCCCCcHHHHHHHHHHHHHHHHHc-------CCCEEEECcccccCc
Confidence 00 000 000123679999999999998766543 788889999877544
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-06 Score=85.63 Aligned_cols=144 Identities=17% Similarity=0.073 Sum_probs=88.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhH----------------HHHHHHHHh----c--------CCCCc
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKG----------------AEAVQVLKD----R--------ASTVP 239 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~----------------~~~~~~l~~----~--------~~~~~ 239 (484)
||||||+|.||.++++.|.++ |. .|++++|..... ++..+.+.. . .....
T Consensus 1 ilItGatG~iG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~ 79 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER-GITDILVVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT 79 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc-CCceEEEEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence 689999999999999999998 66 687777643211 111222221 1 01111
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccC
Q psy8786 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319 (484)
Q Consensus 240 ~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (484)
...+.+..+++|+.++..+++++... +.++|++||...++..... +.+ .. ..
T Consensus 80 ~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~--~~e-----------------~~------~~ 131 (314)
T TIGR02197 80 TETDGEYMMENNYQYSKRLLDWCAEK---GIPFIYASSAATYGDGEAG--FRE-----------------GR------EL 131 (314)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHh---CCcEEEEccHHhcCCCCCC--ccc-----------------cc------Cc
Confidence 22355678899999999999987653 3589999997654322110 000 00 00
Q ss_pred CCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 320 ~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
..+...|+.||.+.+.+++....+.. .++++..+.|+.+.-+
T Consensus 132 ~~p~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~~~~lR~~~vyG~ 173 (314)
T TIGR02197 132 ERPLNVYGYSKFLFDQYVRRRVLPEA-----LSAQVVGLRYFNVYGP 173 (314)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHhhc-----cCCceEEEEEeeccCC
Confidence 01236899999999999875332211 1467777787766443
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=84.67 Aligned_cols=90 Identities=14% Similarity=-0.015 Sum_probs=60.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------CC-CC---c--cHHHHHHHHHhh
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------AS-TV---P--FAIQAEKTILTN 251 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------~~-~~---~--~~~~~~~~~~vN 251 (484)
.+++|||||+|.||.+++++|+++ |.+|++..++..+.+.....+... .. .. . ..+.....+++|
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~-g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~N 87 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQ-GIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRAN 87 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHH
Confidence 367999999999999999999998 888876555444444344444321 11 11 0 223456788999
Q ss_pred hHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+.|+.++++++... +.+.+++||..
T Consensus 88 v~gt~~ll~aa~~~---gv~~v~~sS~~ 112 (298)
T PLN02778 88 VVGTLTLADVCRER---GLVLTNYATGC 112 (298)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEecce
Confidence 99999999988653 33455566543
|
|
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-06 Score=81.60 Aligned_cols=153 Identities=17% Similarity=0.084 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH------------------------HHhc---CC
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV------------------------LKDR---AS 236 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~------------------------l~~~---~~ 236 (484)
..+++++||||+|.||..+|++|..+ |..|++.|.--..-++..+- +-.. ..
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~e-gh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapas 103 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTE-GHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPAS 103 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhc-CCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCC
Confidence 46789999999999999999999999 78898887532221111111 1000 01
Q ss_pred CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 237 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 237 ~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
.......--+++.+|+.++.+....+... +.|++..|+.-.++.+...+.. ... -..
T Consensus 104 p~~y~~npvktIktN~igtln~lglakrv---~aR~l~aSTseVYgdp~~hpq~-----------e~y---------wg~ 160 (350)
T KOG1429|consen 104 PPHYKYNPVKTIKTNVIGTLNMLGLAKRV---GARFLLASTSEVYGDPLVHPQV-----------ETY---------WGN 160 (350)
T ss_pred CcccccCccceeeecchhhHHHHHHHHHh---CceEEEeecccccCCcccCCCc-----------ccc---------ccc
Confidence 11111233467789999999888776543 4788888877666554432100 000 011
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.....+++.|...|.+.+.|+..+.++. ||.|-...+--+.-|.
T Consensus 161 vnpigpr~cydegKr~aE~L~~~y~k~~-------giE~rIaRifNtyGPr 204 (350)
T KOG1429|consen 161 VNPIGPRSCYDEGKRVAETLCYAYHKQE-------GIEVRIARIFNTYGPR 204 (350)
T ss_pred cCcCCchhhhhHHHHHHHHHHHHhhccc-------CcEEEEEeeecccCCc
Confidence 1122245899999999999998777654 7777767765555553
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-06 Score=84.14 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=77.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-------hhHHHHHHHHHh---c-----CC-CC--ccHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-------KKGAEAVQVLKD---R-----AS-TV--PFAIQAEKTIL 249 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-------~~~~~~~~~l~~---~-----~~-~~--~~~~~~~~~~~ 249 (484)
++|||||+|.||++++++|+++ | +|++++|.. .+.+...+.+.. + .. .. ....+.+..++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-g-~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~ 79 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-G-NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQL 79 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-C-CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHH
Confidence 5999999999999999999998 5 688777743 122223333332 1 11 11 11123456678
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHh
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVS 329 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aS 329 (484)
+|+.++.++++++... +.++|++||...++..... .+. + . ....|...|+.|
T Consensus 80 ~N~~~~~~l~~aa~~~---g~~~v~~Ss~~Vy~~~~~~-p~~-------E---------------~--~~~~P~~~Yg~s 131 (299)
T PRK09987 80 LNATSVEAIAKAANEV---GAWVVHYSTDYVFPGTGDI-PWQ-------E---------------T--DATAPLNVYGET 131 (299)
T ss_pred HHHHHHHHHHHHHHHc---CCeEEEEccceEECCCCCC-CcC-------C---------------C--CCCCCCCHHHHH
Confidence 9999999999987653 4589999886654322110 000 0 0 001133689999
Q ss_pred HHHHHHHHHHH
Q psy8786 330 KIGVNLLTRIY 340 (484)
Q Consensus 330 KaAl~~lt~~L 340 (484)
|.+.+.+++.+
T Consensus 132 K~~~E~~~~~~ 142 (299)
T PRK09987 132 KLAGEKALQEH 142 (299)
T ss_pred HHHHHHHHHHh
Confidence 99999888643
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=83.65 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=78.0
Q ss_pred EEcCCchHHHHHHHHHHhcCCC--eEEEEecCchh--H-HHHHHHH-------------Hhc------------------
Q psy8786 191 VTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKK--G-AEAVQVL-------------KDR------------------ 234 (484)
Q Consensus 191 ITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~--~-~~~~~~l-------------~~~------------------ 234 (484)
||||+|.||..+.++|+++ +. +|++..|..+. + +...+.+ .+.
T Consensus 1 lTGaTGflG~~ll~~Ll~~-~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQ-PPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHH-S-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcC-CCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 7999999999999999998 44 89999997643 2 2221111 111
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
+.........+...++|+.|+..+++.+... +..+++++||........... .+ .
T Consensus 80 ~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~--~~~~~~~iSTa~v~~~~~~~~--~~------~ 149 (249)
T PF07993_consen 80 DYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG--KRKRFHYISTAYVAGSRPGTI--EE------K 149 (249)
T ss_dssp HHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS--S---EEEEEEGGGTTS-TTT----S------S
T ss_pred HhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc--cCcceEEeccccccCCCCCcc--cc------c
Confidence 1111111233445779999999999887642 123999999932221111000 00 0
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
........ ......+ ...|..||..-+.+.+..+.+. |+.+..+.||.|-.
T Consensus 150 ~~~~~~~~-------~~~~~~~-~~gY~~SK~~aE~~l~~a~~~~-------g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 150 VYPEEEDD-------LDPPQGF-PNGYEQSKWVAERLLREAAQRH-------GLPVTIYRPGIIVG 200 (249)
T ss_dssp S-HHH--E-------EE--TTS-EE-HHHHHHHHHHHHHHHHHHH----------EEEEEE-EEE-
T ss_pred cccccccc-------chhhccC-CccHHHHHHHHHHHHHHHHhcC-------CceEEEEecCcccc
Confidence 00000000 0000011 2589999999999998777642 78999999999976
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=83.70 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=87.4
Q ss_pred EEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHHHh---c-----CCC----CccHHHHHHHHHhhhH
Q psy8786 190 VVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVLKD---R-----AST----VPFAIQAEKTILTNYL 253 (484)
Q Consensus 190 LITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l~~---~-----~~~----~~~~~~~~~~~~vN~~ 253 (484)
|||||+|.||..+++.|+++ |..|+++.+..+ +.+...+.+.. + ... .......+..+++|+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~ 79 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQ 79 (306)
T ss_pred CcccCCCcccHHHHHHHHhC-CCcEEEeeccccCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhH
Confidence 69999999999999999998 776665543221 11222222222 1 100 0112334567889999
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCC-ChhhHHhHHH
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP-DSAYAVSKIG 332 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~aSKaA 332 (484)
++..+++++... .-.++|++||...++..... ..++.... . ....| ...|+.||.+
T Consensus 80 ~~~~ll~~~~~~--~~~~~i~~SS~~vyg~~~~~-~~~E~~~~----------------~----~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 80 IQTNVIDAAYRH--GVKKLLFLGSSCIYPKFAPQ-PIPETALL----------------T----GPPEPTNEWYAIAKIA 136 (306)
T ss_pred HHHHHHHHHHHc--CCCeEEEeCceeecCCCCCC-CCCHHHhc----------------c----CCCCCCcchHHHHHHH
Confidence 999999888653 23589999986544321110 00000000 0 00001 1359999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 333 VNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 333 l~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+.+.+.+.++. ++++..+.|+.|--+
T Consensus 137 ~e~~~~~~~~~~-------~~~~~~~R~~~vyG~ 163 (306)
T PLN02725 137 GIKMCQAYRIQY-------GWDAISGMPTNLYGP 163 (306)
T ss_pred HHHHHHHHHHHh-------CCCEEEEEecceeCC
Confidence 998887765543 788999999887554
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.4e-06 Score=82.78 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=91.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh-----c---------------CCCCccH--
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD-----R---------------ASTVPFA-- 241 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~-----~---------------~~~~~~~-- 241 (484)
+++++|||+|.||+-+.++|..+..++|++..|-.+ ..+...+.+.. + .......
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 469999999999999999999876679999888543 11222222220 0 0011111
Q ss_pred ---------------------HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 242 ---------------------IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 242 ---------------------~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
....+....|+.|+..+++.+.- .+...+.+|||++........ ..+..+.
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~--gk~Kp~~yVSsisv~~~~~~~-~~~~~~~----- 152 (382)
T COG3320 81 WQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAAT--GKPKPLHYVSSISVGETEYYS-NFTVDFD----- 152 (382)
T ss_pred HHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhc--CCCceeEEEeeeeeccccccC-CCccccc-----
Confidence 22345667899999998887653 223458889988752221110 0000000
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
... .......+ .-..|+.||.+-+.+++... .. |+++..+.||+|--+-
T Consensus 153 --------~~~-~~~~~~~~-~~~GY~~SKwvaE~Lvr~A~----~r----GLpv~I~Rpg~I~gds 201 (382)
T COG3320 153 --------EIS-PTRNVGQG-LAGGYGRSKWVAEKLVREAG----DR----GLPVTIFRPGYITGDS 201 (382)
T ss_pred --------ccc-ccccccCc-cCCCcchhHHHHHHHHHHHh----hc----CCCeEEEecCeeeccC
Confidence 000 00000001 12689999999998886433 33 8999999999995443
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=82.60 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH------H--------------------HHHHHHh---c
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA------E--------------------AVQVLKD---R 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~------~--------------------~~~~l~~---~ 234 (484)
.++++++||||+|+||++++++|+++ |.+|++++|+.++.+ + ..+.+.. .
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 36789999999999999999999998 899999999764321 0 0011110 0
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
.............+++|+.++.++++++... ...++|++||..... +
T Consensus 137 ~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~--gv~r~V~iSS~~v~~-p------------------------- 188 (390)
T PLN02657 137 VDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREV--GAKHFVLLSAICVQK-P------------------------- 188 (390)
T ss_pred CcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHc--CCCEEEEEeeccccC-c-------------------------
Confidence 0000000011233556777777777765431 125899999875421 1
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
...|..+|...+...+. ... |+++..|+|+.+.
T Consensus 189 -------------~~~~~~sK~~~E~~l~~-----~~~----gl~~tIlRp~~~~ 221 (390)
T PLN02657 189 -------------LLEFQRAKLKFEAELQA-----LDS----DFTYSIVRPTAFF 221 (390)
T ss_pred -------------chHHHHHHHHHHHHHHh-----ccC----CCCEEEEccHHHh
Confidence 14688889888766542 112 7889999997654
|
|
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=79.12 Aligned_cols=133 Identities=16% Similarity=0.087 Sum_probs=85.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHHH----------------------hc-----
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVLK----------------------DR----- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l~----------------------~~----- 234 (484)
+++||||||+|-||.+++.+|.++ |..|+++|.-.. .+....+... +.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~-gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~ 80 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKR-GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA 80 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhC-CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence 578999999999999999999998 899998875322 2222211111 00
Q ss_pred -------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 235 -------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 -------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
.......+........|+.|++.+++....+= ...+|+.||..-++.+... .
T Consensus 81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~--~~~~V~sssatvYG~p~~i-------------------p 139 (343)
T KOG1371|consen 81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN--VKALVFSSSATVYGLPTKV-------------------P 139 (343)
T ss_pred EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC--CceEEEecceeeecCccee-------------------e
Confidence 01111223334566789999999887765531 3678888887766554421 0
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela 345 (484)
++. .. .-.||...|+.+|.+++...+.+...+.
T Consensus 140 ~te----~~-~t~~p~~pyg~tK~~iE~i~~d~~~~~~ 172 (343)
T KOG1371|consen 140 ITE----ED-PTDQPTNPYGKTKKAIEEIIHDYNKAYG 172 (343)
T ss_pred ccC----cC-CCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence 000 00 1124568999999999999988877553
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.2e-05 Score=75.98 Aligned_cols=139 Identities=13% Similarity=0.147 Sum_probs=105.8
Q ss_pred CCEEEEEcC-CchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 186 ERVAVVTGA-NKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 186 gKvaLITGa-ssGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
..+|||-|. +-=|++.+|..|-++ |.-|+++..+.++.+....+-...
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRR-GFIV~v~~~~~ed~~~ve~e~~~dI~~L~ld~~~~~~~~~~l~~f~~~L~~p~~ 81 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERR-GFIVYVTVSSAEDEKYVESEDRPDIRPLWLDDSDPSSIHASLSRFASLLSRPHV 81 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhC-CeEEEEEeCCHHHHHHHHhccCCCCCCcccCCCCCcchHHHHHHHHHHhcCCCC
Confidence 367999995 789999999999999 999999998876544332221111
Q ss_pred --------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEe-CCCc-cc
Q psy8786 235 --------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLS-SSAG-HL 282 (484)
Q Consensus 235 --------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iS-S~ag-~~ 282 (484)
.......+.|.+.+++|+.-++..++.++|+++. ..+||.+. |+.. ..
T Consensus 82 p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ssl~ 161 (299)
T PF08643_consen 82 PFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSISSSLN 161 (299)
T ss_pred CCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchhhccC
Confidence 1112234789999999999999999999999987 36776665 4433 23
Q ss_pred cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
.+.. +.-.....++.+|++.|++|+.+. ||.|..|.-|.
T Consensus 162 ~Pfh-------------------------------------spE~~~~~al~~~~~~LrrEl~~~----~I~V~~i~LG~ 200 (299)
T PF08643_consen 162 PPFH-------------------------------------SPESIVSSALSSFFTSLRRELRPH----NIDVTQIKLGN 200 (299)
T ss_pred CCcc-------------------------------------CHHHHHHHHHHHHHHHHHHHhhhc----CCceEEEEeee
Confidence 2322 566788889999999999999876 99999999999
Q ss_pred ccCC
Q psy8786 363 VATN 366 (484)
Q Consensus 363 V~T~ 366 (484)
++-.
T Consensus 201 l~i~ 204 (299)
T PF08643_consen 201 LDIG 204 (299)
T ss_pred eccc
Confidence 8765
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-05 Score=72.46 Aligned_cols=158 Identities=16% Similarity=0.044 Sum_probs=88.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHHH-----hhhHHH----HHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTIL-----TNYLGL----VRTC 259 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----vN~~g~----~~l~ 259 (484)
|+|+||+|.+|+.++++|+++ |++|++..|++++.++ ...+.-........+.+...+. ++..++ ...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhccccccc
Confidence 689999999999999999999 7999999999887665 0000000000011112221111 011110 3334
Q ss_pred HHHHHhhhcC--CEEEEEeCCCccccccch-HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHH
Q psy8786 260 VFLFPLLRRH--ARVVNLSSSAGHLSQITN-LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLL 336 (484)
Q Consensus 260 ~allp~l~~~--grIV~iSS~ag~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~l 336 (484)
+.++..+++. .++|.+|+.......... ... .......|...|...+.+
T Consensus 79 ~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDE----------------------------DKPIFPEYARDKREAEEA 130 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGG----------------------------TCGGGHHHHHHHHHHHHH
T ss_pred ccccccccccccccceeeeccccCCCCCcccccc----------------------------cccchhhhHHHHHHHHHH
Confidence 4444444433 589999887764321110 000 000013566777655543
Q ss_pred HHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------CCCCHHhHHHHHHHHH
Q psy8786 337 TRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----------GNVNIFDDSSTFNAFE 387 (484)
Q Consensus 337 t~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------~~~~peevA~~~~~L~ 387 (484)
. ... +++...++||++..+..... ...+.+|+|+.++.++
T Consensus 131 ~-------~~~----~~~~~ivrp~~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l 181 (183)
T PF13460_consen 131 L-------RES----GLNWTIVRPGWIYGNPSRSYRLIKEGGPQGVNFISREDVAKAIVEAL 181 (183)
T ss_dssp H-------HHS----TSEEEEEEESEEEBTTSSSEEEESSTSTTSHCEEEHHHHHHHHHHHH
T ss_pred H-------Hhc----CCCEEEEECcEeEeCCCcceeEEeccCCCCcCcCCHHHHHHHHHHHh
Confidence 3 123 79999999999866642211 1156778888777654
|
... |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=85.02 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCc
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDK 221 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~ 221 (484)
++||+++||||+|.||..+++.|++.+. .+|++..|..
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~ 48 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRAS 48 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 5899999999999999999999997522 3688888864
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=79.86 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=57.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH------------------HHHHhc----CCCCccHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV------------------QVLKDR----ASTVPFAIQAE 245 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~------------------~~l~~~----~~~~~~~~~~~ 245 (484)
+++||||+|.||++++++|+++ |++|++.+|+.++..... +.+.+. ........+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~ 80 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLY 80 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCcc
Confidence 5999999999999999999998 899999999865432211 011100 00000011223
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
...++|+.++.++++++... .-.++|++||..
T Consensus 81 ~~~~~~~~~~~~l~~aa~~~--gvkr~I~~Ss~~ 112 (317)
T CHL00194 81 NAKQIDWDGKLALIEAAKAA--KIKRFIFFSILN 112 (317)
T ss_pred chhhhhHHHHHHHHHHHHHc--CCCEEEEecccc
Confidence 45667888888887776542 124899988754
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=73.16 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=32.1
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG 224 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~ 224 (484)
++||||+|.||+.++++|+++ |..|.+..|+.++.
T Consensus 2 ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSS 36 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhC-CCcEEEEeCCCccc
Confidence 899999999999999999998 89999999997643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-05 Score=84.98 Aligned_cols=142 Identities=15% Similarity=0.053 Sum_probs=86.4
Q ss_pred EEEEEcCCchHHHHHHHHHHh--cCCCeEEEEecCchh--HHHHHHHHH--------------------------hc---
Q psy8786 188 VAVVTGANKGLGFGIVKSLCE--QFDGYIYLTARDKKK--GAEAVQVLK--------------------------DR--- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~--~gga~Vvl~~R~~~~--~~~~~~~l~--------------------------~~--- 234 (484)
+||||||+|.||++++++|++ + +.+|++++|+... .++...... ..
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~-g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRR-EATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCC-CCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 599999999999999999994 5 7899999996432 111111100 00
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
..........+...++|+.|+..+++++... ...++|++||...++..... ..+.. .
T Consensus 81 Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~v~~SS~~v~g~~~~~--~~e~~-------------~-- 141 (657)
T PRK07201 81 VVHLAAIYDLTADEEAQRAANVDGTRNVVELAERL--QAATFHHVSSIAVAGDYEGV--FREDD-------------F-- 141 (657)
T ss_pred EEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhc--CCCeEEEEeccccccCccCc--ccccc-------------c--
Confidence 0000001123456788999999988876542 23689999997664321110 00000 0
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
.....+...|+.||...+.+.+. .. |+++..+.|+.|..
T Consensus 142 ------~~~~~~~~~Y~~sK~~~E~~~~~------~~----g~~~~ilRp~~v~G 180 (657)
T PRK07201 142 ------DEGQGLPTPYHRTKFEAEKLVRE------EC----GLPWRVYRPAVVVG 180 (657)
T ss_pred ------hhhcCCCCchHHHHHHHHHHHHH------cC----CCcEEEEcCCeeee
Confidence 00000125799999999988742 12 78999999998854
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=79.14 Aligned_cols=139 Identities=17% Similarity=0.093 Sum_probs=85.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh---c-----CCC---CccHHHHHHHHHhhhH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD---R-----AST---VPFAIQAEKTILTNYL 253 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~---~-----~~~---~~~~~~~~~~~~vN~~ 253 (484)
++|||||+|-||.++++.|.++ |..|+.+.|+.- +.++..+.+.. + ... ...+.+.+..+++|+.
T Consensus 2 riLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~ 80 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKER-GYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVD 80 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTT-SEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH
T ss_pred EEEEECCCCHHHHHHHHHHhhC-CCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhH
Confidence 5999999999999999999987 778888877532 22223333322 2 111 1122456678999999
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHH
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGV 333 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl 333 (484)
++..+.+++.. .+.++|++||...+.+..... + .-...+-|...|+.+|...
T Consensus 81 ~~~~la~~~~~---~~~~li~~STd~VFdG~~~~~-y------------------------~E~d~~~P~~~YG~~K~~~ 132 (286)
T PF04321_consen 81 ATKNLAEACKE---RGARLIHISTDYVFDGDKGGP-Y------------------------TEDDPPNPLNVYGRSKLEG 132 (286)
T ss_dssp HHHHHHHHHHH---CT-EEEEEEEGGGS-SSTSSS-B-------------------------TTS----SSHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCcEEEeeccEEEcCCcccc-c------------------------ccCCCCCCCCHHHHHHHHH
Confidence 99999988764 367999999976532221100 0 0000112347999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 334 NLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 334 ~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
+...+... . +...+.+|++-.+
T Consensus 133 E~~v~~~~----------~-~~~IlR~~~~~g~ 154 (286)
T PF04321_consen 133 EQAVRAAC----------P-NALILRTSWVYGP 154 (286)
T ss_dssp HHHHHHH-----------S-SEEEEEE-SEESS
T ss_pred HHHHHHhc----------C-CEEEEecceeccc
Confidence 98886411 1 3455677776544
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=79.49 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCchh--HH-HHHHHHH---------h------------c---
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKKK--GA-EAVQVLK---------D------------R--- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~~--~~-~~~~~l~---------~------------~--- 234 (484)
++||+|+||||+|.||..++++|++.+. .+|++..|..+. +. ...+++. + .
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 5899999999999999999999998622 368888886432 21 1111110 0 0
Q ss_pred ------------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 235 ------------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 235 ------------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
+......+..+..+++|+.|+.++++.+... ..-.++|++||...+
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~-~~lk~fV~vSTayVy 272 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKC-KKLKLFLQVSTAYVN 272 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCCeEEEccCceee
Confidence 0000112335677889999999999877653 222578888886543
|
|
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.2e-05 Score=76.86 Aligned_cols=154 Identities=19% Similarity=0.087 Sum_probs=94.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchh----HHHHH----------HHHHhc---------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKK----GAEAV----------QVLKDR--------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~----~~~~~----------~~l~~~--------------- 234 (484)
++.+++||||+|.+|++++.+|.+.+ ...|.+.|..... .+... .++.+.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~~Vvh~ 82 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGAVVVHC 82 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCceEEEe
Confidence 56889999999999999999999984 3578888876431 11110 000000
Q ss_pred -CCCCc--cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 -ASTVP--FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 -~~~~~--~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
....+ ...+.+..+++|+.|+.++++++... .-.++|++||...........+-++..
T Consensus 83 aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~--~v~~lIYtSs~~Vvf~g~~~~n~~E~~----------------- 143 (361)
T KOG1430|consen 83 AASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL--GVKRLIYTSSAYVVFGGEPIINGDESL----------------- 143 (361)
T ss_pred ccccCccccccchhhheeecchhHHHHHHHHHHh--CCCEEEEecCceEEeCCeecccCCCCC-----------------
Confidence 00000 11257888999999999988887653 136899999877632211100000000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
+ +..-....|+.||+--+.+++..+. . .+....++.|-.|--|-..
T Consensus 144 -p----~p~~~~d~Y~~sKa~aE~~Vl~an~---~----~~l~T~aLR~~~IYGpgd~ 189 (361)
T KOG1430|consen 144 -P----YPLKHIDPYGESKALAEKLVLEANG---S----DDLYTCALRPPGIYGPGDK 189 (361)
T ss_pred -C----CccccccccchHHHHHHHHHHHhcC---C----CCeeEEEEccccccCCCCc
Confidence 0 0000125899999999988864432 1 2588899999887655433
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.3e-05 Score=74.30 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=81.5
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc------hhHHHHHHHHHhc--------CCCCccHHHHHHHHHhhhHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK------KKGAEAVQVLKDR--------ASTVPFAIQAEKTILTNYLG 254 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~------~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~vN~~g 254 (484)
+||||++|-+|.++++.|. . +..|+.++|.. +.+.+.+.+.+.+ ......+.+.+..+.+|..|
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~-~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~ 80 (281)
T COG1091 3 ILITGANGQLGTELRRALP-G-EFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATG 80 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-C-CceEEeccCccccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHH
Confidence 9999999999999999998 3 78898887754 2333444444322 11222334568899999999
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHH
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~ 334 (484)
+.++.+++... +..+|++|+-....+.... +..-.-.+-|...|+.||.+-+
T Consensus 81 ~~~lA~aa~~~---ga~lVhiSTDyVFDG~~~~-------------------------~Y~E~D~~~P~nvYG~sKl~GE 132 (281)
T COG1091 81 AENLARAAAEV---GARLVHISTDYVFDGEKGG-------------------------PYKETDTPNPLNVYGRSKLAGE 132 (281)
T ss_pred HHHHHHHHHHh---CCeEEEeecceEecCCCCC-------------------------CCCCCCCCCChhhhhHHHHHHH
Confidence 99999988653 6789999986542221110 0000011224589999999999
Q ss_pred HHHHHH
Q psy8786 335 LLTRIY 340 (484)
Q Consensus 335 ~lt~~L 340 (484)
..++..
T Consensus 133 ~~v~~~ 138 (281)
T COG1091 133 EAVRAA 138 (281)
T ss_pred HHHHHh
Confidence 888643
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=72.19 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=51.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH-------------HHHHhc------CCC----C-ccHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-------------QVLKDR------AST----V-PFAIQA 244 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~-------------~~l~~~------~~~----~-~~~~~~ 244 (484)
+|||||+|.||.++++.|+++ |.+|++++|+.+...... +.+.+. ... . ...+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~ 79 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD-GHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGEPIADKRWTEERK 79 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc-CCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCCCcccccCCHHHH
Confidence 589999999999999999998 899999999865432111 011100 110 0 122344
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q psy8786 245 EKTILTNYLGLVRTCVFLFP 264 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp 264 (484)
+..+++|+.++..+++++..
T Consensus 80 ~~~~~~n~~~~~~l~~a~~~ 99 (292)
T TIGR01777 80 QEIRDSRIDTTRALVEAIAA 99 (292)
T ss_pred HHHHhcccHHHHHHHHHHHh
Confidence 56778999999888887754
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00031 Score=78.74 Aligned_cols=91 Identities=15% Similarity=0.020 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEE-EEec--CchhHHHHHHHHHhc-----CC-C-----CccHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIY-LTAR--DKKKGAEAVQVLKDR-----AS-T-----VPFAIQAEKTILT 250 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vv-l~~R--~~~~~~~~~~~l~~~-----~~-~-----~~~~~~~~~~~~v 250 (484)
..+++|||||+|.||+++++.|.++ |..|. ..++ +.+..+..+++.+.+ .. . ....++.+..+++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~-g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQ-GIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhC-CCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 4467999999999999999999988 77873 3332 222223333222212 11 1 1123456788999
Q ss_pred hhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 251 NYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 251 N~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|+.|+.++++++... +.+.+++||..
T Consensus 458 N~~gt~~l~~a~~~~---g~~~v~~Ss~~ 483 (668)
T PLN02260 458 NVVGTLTLADVCREN---GLLMMNFATGC 483 (668)
T ss_pred HhHHHHHHHHHHHHc---CCeEEEEcccc
Confidence 999999999988653 44667776644
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00088 Score=81.09 Aligned_cols=164 Identities=16% Similarity=0.075 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcC---CCeEEEEecCchhHH---HHHHHHHh----------c-----C-CCC----
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQF---DGYIYLTARDKKKGA---EAVQVLKD----------R-----A-STV---- 238 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~g---ga~Vvl~~R~~~~~~---~~~~~l~~----------~-----~-~~~---- 238 (484)
..++|+||||+|.||..++++|++++ ..+|++..|+....+ ...+.... . + ...
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35889999999999999999999873 267888888754322 11111100 0 0 000
Q ss_pred ccH-----------------------HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 239 PFA-----------------------IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 239 ~~~-----------------------~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
... ..++.....|+.|+..+++.+... +..+++++||.+.+........ .....
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~v~vSS~~v~~~~~~~~~-~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEG--KAKQFSFVSSTSALDTEYYVNL-SDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhC--CCceEEEEeCeeecCcccccch-hhhhh
Confidence 001 122333457999999998877542 2358999999866432111000 00000
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.. ....... ..... .........|+.||.+.+.+++..+ .. |+.+..+.||.|..+
T Consensus 1127 ~~-~~~~~~e-----~~~~~-~~~~~~~~~Y~~sK~~aE~l~~~~~----~~----g~~~~i~Rpg~v~G~ 1182 (1389)
T TIGR03443 1127 QA-GGAGIPE-----SDDLM-GSSKGLGTGYGQSKWVAEYIIREAG----KR----GLRGCIVRPGYVTGD 1182 (1389)
T ss_pred hc-cCCCCCc-----ccccc-cccccCCCChHHHHHHHHHHHHHHH----hC----CCCEEEECCCccccC
Confidence 00 0000000 00000 0000012569999999998886533 23 799999999998543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0029 Score=68.07 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCCCCCCEEEEEcCC-chHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 181 SVDPSERVAVVTGAN-KGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 181 ~~~L~gKvaLITGas-sGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
.....+|++|||||+ +-||.+++..|+.. |+.||++..+
T Consensus 391 ~~~y~d~valVTGA~~gSIaa~Vv~~LL~g-GAtVI~TTS~ 430 (866)
T COG4982 391 GGTYGDKVALVTGASKGSIAAAVVARLLAG-GATVIATTSR 430 (866)
T ss_pred CCCcccceEEEecCCCcchHHHHHHHHHhC-CcEEEEEccc
Confidence 456789999999999 56999999999986 8899887654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00046 Score=65.05 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=44.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.++++|+++|+||+|++|+++++.|+++ |++|++++|+.+++++..+.+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~~~~~~~l~~~l~ 73 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDLERAQKAADSLR 73 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHH
Confidence 4678999999999999999999999998 7899999999888887777664
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=75.15 Aligned_cols=85 Identities=20% Similarity=0.126 Sum_probs=55.2
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH---------------HHHHHHHHhc----CCCCccHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG---------------AEAVQVLKDR----ASTVPFAIQAEKTI 248 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~---------------~~~~~~l~~~----~~~~~~~~~~~~~~ 248 (484)
+++||||+|+||++++++|+++ |++|++++|+.... +...+.+... ...... ...+
T Consensus 2 kILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~----~~~~ 76 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVR----GRND 76 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcc----cchH
Confidence 5999999999999999999998 88999999864221 1111111110 000000 1146
Q ss_pred HhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 249 LTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 249 ~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
++|+.++.++++++... ..+++|++||..
T Consensus 77 ~vNv~GT~nLLeAa~~~--gvkr~V~iSS~~ 105 (854)
T PRK05865 77 HINIDGTANVLKAMAET--GTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHHHc--CCCeEEEECCcH
Confidence 78999988887765432 235899998853
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=64.51 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=32.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
++||||+|-||++++.+|.+. |+.|++..|+..+.+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~-gh~v~iltR~~~~~~ 36 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKG-GHQVTILTRRPPKAS 36 (297)
T ss_pred CeEeccccchhHHHHHHHHhC-CCeEEEEEcCCcchh
Confidence 589999999999999999997 899999999876544
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00056 Score=68.85 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCc---hhHHHHHHHHHh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDK---KKGAEAVQVLKD 233 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~---~~~~~~~~~l~~ 233 (484)
.++++|+++|||| ||+|++++..|++. |+ +|++++|+. +++++..+++..
T Consensus 122 ~~~~~k~vlI~GA-GGagrAia~~La~~-G~~~V~I~~R~~~~~~~a~~l~~~l~~ 175 (289)
T PRK12548 122 VDVKGKKLTVIGA-GGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTAEKIKQ 175 (289)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHHHHHHHhh
Confidence 3578999999999 69999999999998 66 599999997 566666666643
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0004 Score=68.35 Aligned_cols=149 Identities=18% Similarity=0.099 Sum_probs=93.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH-------------------------------HHHHHHHHhc
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG-------------------------------AEAVQVLKDR 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~-------------------------------~~~~~~l~~~ 234 (484)
+|++||||-+|-=|.-+|+.|++. |+.|..+.|..... ..++++++.+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLek-GY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEK-GYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhc-CcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 589999999999999999999999 99999887642211 1111111111
Q ss_pred --------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccc
Q psy8786 235 --------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 --------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
.....+.++.+.+.+++..|+.++++++.-.=.+..|+...||.--++.-...
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~------------------- 141 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEI------------------- 141 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccC-------------------
Confidence 11222335566788899999999888765432335677766664332211100
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG 361 (484)
.+... ..-.|.++|+++|..-.-+|..+...++-+ +-.||-+|.=+|.
T Consensus 142 ----pq~E~--TPFyPrSPYAvAKlYa~W~tvNYResYgl~-AcnGILFNHESP~ 189 (345)
T COG1089 142 ----PQKET--TPFYPRSPYAVAKLYAYWITVNYRESYGLF-ACNGILFNHESPL 189 (345)
T ss_pred ----ccccC--CCCCCCCHHHHHHHHHHheeeehHhhcCce-eecceeecCCCCC
Confidence 00000 011245899999999999998888776542 3337888877775
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=65.34 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=86.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEec-CchhHHHHHHHHHhc-------------------CCCCc------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTAR-DKKKGAEAVQVLKDR-------------------ASTVP------ 239 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R-~~~~~~~~~~~l~~~-------------------~~~~~------ 239 (484)
|.++||||.+.||...+..++..-. .+.+..+. +--......+++... .....
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 8899999999999999999987511 13333321 100001111111110 00000
Q ss_pred ---------cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 240 ---------FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 240 ---------~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
+-.+.-...+.|++++..+++.+.-.. +--++|.+|+-..++........+
T Consensus 87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg-~i~~fvhvSTdeVYGds~~~~~~~------------------- 146 (331)
T KOG0747|consen 87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSG-NIRRFVHVSTDEVYGDSDEDAVVG------------------- 146 (331)
T ss_pred hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhcc-CeeEEEEecccceecCcccccccc-------------------
Confidence 001112345689999998888776542 225789999877654433210000
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
..+ ..-|-..|++||+|.+++.+++.+.+ |+.|..+.-+-|--|
T Consensus 147 ---E~s--~~nPtnpyAasKaAaE~~v~Sy~~sy-------~lpvv~~R~nnVYGP 190 (331)
T KOG0747|consen 147 ---EAS--LLNPTNPYAASKAAAEMLVRSYGRSY-------GLPVVTTRMNNVYGP 190 (331)
T ss_pred ---ccc--cCCCCCchHHHHHHHHHHHHHHhhcc-------CCcEEEEeccCccCC
Confidence 000 11233789999999999999998876 788888877766555
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=64.99 Aligned_cols=113 Identities=24% Similarity=0.187 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc-----cCC----------CCCCHHhHHHHHHHHHhhhccc-ccccc
Q psy8786 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS-----SFM----------GNVNIFDDSSTFNAFERVISHF-LIGQQ 398 (484)
Q Consensus 335 ~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~-----~~~----------~~~~peevA~~~~~L~s~~a~~-itG~~ 398 (484)
+|-+.||+.+.+. |.+|.+=|+ |+-. ... .-.++|.+.++..|+.....+. +.|-+
T Consensus 40 GfG~~LA~~L~~~----Gf~V~Agcl----~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gLwglV 111 (322)
T KOG1610|consen 40 GFGRLLAKKLDKK----GFRVFAGCL----TEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGLWGLV 111 (322)
T ss_pred HHHHHHHHHHHhc----CCEEEEEee----cCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccccceeEE
Confidence 3567778888776 999988772 2211 011 1167888888888876433221 22221
Q ss_pred ccccccceeec---ccccccccccccccccchhhhHHHHhhhccc-ceEEEecCCCCcccc
Q psy8786 399 INTFIPAIYTV---PFAIQAEKTILTNYLGLVRTCVFLFPLLRRH-ARVVNLSSSAGHLSQ 455 (484)
Q Consensus 399 i~~~~~g~~~~---~~a~~~~~~~~~~~~g~~~v~~~~l~lLr~~-~rivnvsS~~G~~~~ 455 (484)
=+.-+.+.... .-..+-++....|.+|+..+++.++|++|+. +||||++|..|+...
T Consensus 112 NNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~ 172 (322)
T KOG1610|consen 112 NNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVAL 172 (322)
T ss_pred eccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccC
Confidence 11111111110 1134567889999999999999999999965 999999999998776
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=57.77 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
++++|+++|-|+ ||.|++++..|++.|..+|+++.|+.+++++..+.+
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 679999999997 899999999999993335999999999999888887
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0023 Score=67.83 Aligned_cols=171 Identities=20% Similarity=0.298 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCch--hHHHHH---------HHHHhc----------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKK--KGAEAV---------QVLKDR---------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~--~~~~~~---------~~l~~~---------------- 234 (484)
++||+++||||+|++|+-+.+.|++... .++++.-|..+ ..++-. +.+++.
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 6899999999999999999999998621 25777777532 222111 111111
Q ss_pred ------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHH
Q psy8786 235 ------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLEL 290 (484)
Q Consensus 235 ------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~ 290 (484)
++...+++..+....+|.+|+..+.+.+... .+-...+.+|..-....... .
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~-~~l~~~vhVSTAy~n~~~~~---i 165 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEM-VKLKALVHVSTAYSNCNVGH---I 165 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHh-hhhheEEEeehhheeccccc---c
Confidence 2333455677788889999999999877654 33456777776544211110 0
Q ss_pred HHHHhhcccccccc-----ccccccC---CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 291 KKRLRQLREPVSLR-----SLNITKE---HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 291 ~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
+|.........+.. ....... .-.....++|| ..|.-+|+-.+++...-+. ++-+..|+|..
T Consensus 166 ~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~P-NTYtfTKal~E~~i~~~~~---------~lPivIiRPsi 235 (467)
T KOG1221|consen 166 EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWP-NTYTFTKALAEMVIQKEAE---------NLPLVIIRPSI 235 (467)
T ss_pred cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCC-CceeehHhhHHHHHHhhcc---------CCCeEEEcCCc
Confidence 00000000000000 0000000 00000112443 5799899887777753322 67888899988
Q ss_pred ccCCCc
Q psy8786 363 VATNMS 368 (484)
Q Consensus 363 V~T~m~ 368 (484)
|-....
T Consensus 236 I~st~~ 241 (467)
T KOG1221|consen 236 ITSTYK 241 (467)
T ss_pred eecccc
Confidence 865543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0016 Score=66.82 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=41.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l 231 (484)
.++++|+++||||+|.||+.+|++|+++.+ .+|++++|+++++++..+++
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el 201 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL 201 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh
Confidence 468999999999999999999999986423 58999999988777765554
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0018 Score=67.98 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcC---------------Cch-HHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 182 VDPSERVAVVTGA---------------NKG-LGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 182 ~~L~gKvaLITGa---------------ssG-IG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.+++||++||||| |+| ||+++|++|+++ |++|++++++.
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~-Ga~V~~v~~~~ 238 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR-GADVTLVSGPV 238 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC-CCEEEEeCCCc
Confidence 3589999999999 455 999999999999 99999998875
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0033 Score=58.62 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=35.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+++||||+ |+|.++++.|+++ |++|++++|+.++.++....+
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~-G~~V~v~~R~~~~~~~l~~~l 43 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEK-GFHVSVIARREVKLENVKRES 43 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHC-cCEEEEEECCHHHHHHHHHHh
Confidence 59999998 7888899999998 899999999987776665544
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=61.80 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=34.1
Q ss_pred CCCEEEEE----cCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 185 SERVAVVT----GANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 185 ~gKvaLIT----GassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
..|+|+|| ||+|.||..++++|+++ |+.|++++|+.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcc
Confidence 44789999 99999999999999998 8999999998654
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0041 Score=62.20 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=42.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.++++|+++|+|+ ||+|++++..|++. | .+|++++|+.+++++..+++.
T Consensus 119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~~~a~~l~~~~~ 168 (278)
T PRK00258 119 VDLKGKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTVERAEELAKLFG 168 (278)
T ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhh
Confidence 4678999999997 89999999999998 6 789999999988887776654
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0041 Score=67.86 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
.++++|+++|+|+ +|+|++++..|+++ |++|++++|+.+++++..+++
T Consensus 375 ~~~~~k~vlIlGa-GGagrAia~~L~~~-G~~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 375 SPLAGKLFVVIGA-GGAGKALAYGAKEK-GARVVIANRTYERAKELADAV 422 (529)
T ss_pred cCCCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh
Confidence 4578999999999 59999999999999 779999999988887776655
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.017 Score=56.35 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=36.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.++||||+|.+|++++++|.++ |.+|.+..|+.+++....
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~ 41 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALA 41 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC-CCEEEEEEeCHHHHHhhc
Confidence 4899999999999999999999 999999999988776654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.02 Score=64.16 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=55.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-------------HHHHH-HHhc----CCCCccHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-------------EAVQV-LKDR----ASTVPFAIQAEKTIL 249 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-------------~~~~~-l~~~----~~~~~~~~~~~~~~~ 249 (484)
+++||||+|.||++++++|.++ |+.|++++|+..... ....+ +.+. ...... ......
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~-G~~Vi~ldr~~~~~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~---~~~~~~ 77 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA-GHTVSGIAQHPHDALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD---TSAPGG 77 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-CCEEEEEeCChhhcccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC---ccchhh
Confidence 4999999999999999999998 889999988543210 00111 1110 000000 011235
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
+|+.|+.++++++.. .+.++|++||..+
T Consensus 78 vNv~Gt~nLleAA~~---~GvRiV~~SS~~G 105 (699)
T PRK12320 78 VGITGLAHVANAAAR---AGARLLFVSQAAG 105 (699)
T ss_pred HHHHHHHHHHHHHHH---cCCeEEEEECCCC
Confidence 789999998887754 2458999998754
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.023 Score=59.50 Aligned_cols=94 Identities=22% Similarity=0.159 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHhc-------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ----VLKDR------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~----~l~~~------------------------- 234 (484)
.+-.+|+|+||+|++|+-+++.|.++ |..|.+..|+.++.++... +....
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkr-gf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~ 155 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKR-GFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVV 155 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHC-CCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccce
Confidence 45678999999999999999999999 7899999999888776644 11100
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
....+..++.....++.+.|..++++++... .-.++|.++++.+
T Consensus 156 ~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~a--Gvk~~vlv~si~~ 204 (411)
T KOG1203|consen 156 IVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKA--GVKRVVLVGSIGG 204 (411)
T ss_pred eEEecccCCCCcccCCCcceecHHHHHHHHHHHHHh--CCceEEEEEeecC
Confidence 0000111122334468889999999988331 1258999988877
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.01 Score=63.29 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=39.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLK 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~ 232 (484)
++++|+++|+|+++ +|.++|+.|+++ |++|++++++. +..++..+++.
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~~l~ 50 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKL-GAKVILTDEKEEDQLKEALEELG 50 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHH
Confidence 57899999999888 999999999999 89999999985 44444444443
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0061 Score=63.85 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcC---------------Cch-HHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 183 DPSERVAVVTGA---------------NKG-LGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 183 ~L~gKvaLITGa---------------ssG-IG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
+++||++||||| |+| +|.++|++|+++ |++|++++++..
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~-Ga~V~~~~g~~~ 236 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR-GADVTLITGPVS 236 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC-CCEEEEeCCCCc
Confidence 589999999999 667 999999999999 899998876643
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.016 Score=52.11 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.++++++++|+|+ +++|.++++.|++.++..|++++|+.++.++..+++.
T Consensus 15 ~~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 15 IELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 3467899999998 7999999999999733679999999888777766654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0081 Score=63.95 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
+++||+++|||+++ +|.++|+.|+++ |++|++.+++...
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~-G~~V~~~d~~~~~ 40 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKL-GANVTVNDGKPFS 40 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHC-CCEEEEEcCCCcc
Confidence 46889999999986 999999999998 8999999987543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.015 Score=55.39 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=41.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
..+++||+++|+|.+ .+|+.+|+.|.+. |++|++.+++.+++++..+.
T Consensus 23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~-G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEE-GAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHH
Confidence 457899999999986 8999999999998 89999999998777666554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=58.25 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
..++|+++|+|+ ||+|++++..|++. |++|++++|+.+++++..+++..
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L~~~-g~~v~v~~R~~~~~~~la~~~~~ 162 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPLLKA-DCNVIIANRTVSKAEELAERFQR 162 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhh
Confidence 346899999998 59999999999998 78999999999888877776643
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0084 Score=60.30 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=58.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH-----HHHhhhHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK-----TILTNYLGLV 256 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~vN~~g~~ 256 (484)
.++.||+++|.|. |+||+++|+.|... |++|++.+|+.++.+...+ . .......++.+. .+-+|.....
T Consensus 147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~-G~~V~v~~R~~~~~~~~~~-~---g~~~~~~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 147 FTIHGSNVMVLGF-GRTGMTIARTFSAL-GARVFVGARSSADLARITE-M---GLIPFPLNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred CCCCCCEEEEEcC-hHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-C---CCeeecHHHHHHHhccCCEEEECCChH
Confidence 5789999999998 56999999999998 7899999999876544321 1 110000111111 1223333222
Q ss_pred HHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 257 RTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 257 ~l~~allp~l~~~grIV~iSS~ag 280 (484)
.+.+..+..|+++.-||+++|..+
T Consensus 221 ii~~~~l~~~k~~aliIDlas~Pg 244 (287)
T TIGR02853 221 VLTADVLSKLPKHAVIIDLASKPG 244 (287)
T ss_pred HhCHHHHhcCCCCeEEEEeCcCCC
Confidence 334555666777778888888664
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.015 Score=46.11 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=21.9
Q ss_pred CC-CEEEEEcCCchHHHH--HHHHHHhcCCCeEEEEecC
Q psy8786 185 SE-RVAVVTGANKGLGFG--IVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 185 ~g-KvaLITGassGIG~a--iA~~La~~gga~Vvl~~R~ 220 (484)
+| |+|||+|+|+|.|+| |+..|. . |++.+-+...
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg-~-gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFG-A-GADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHC-C---EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhc-C-CCCEEEEeec
Confidence 44 899999999999999 555552 2 7776665543
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.083 Score=52.36 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|++++|+|+++++|.++++.+... |.+|+++++++++.+.+
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 185 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWA-GARVIATASSAEGAELV 185 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Confidence 5799999999999999999988877 88999999987765554
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.63 Score=44.92 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=25.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEec
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTAR 219 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R 219 (484)
|+++|||++|=.|.||.+.+.+++. -+.++.+.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s 36 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS 36 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc
Confidence 6799999999999999999998744 24444443
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.042 Score=55.93 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-----ccHHHHHHH------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-----PFAIQAEKT------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~------~~vN~~ 253 (484)
.|++++|+||++++|..++...... |++|+.+++++++.+.+.+.+....... ...+..... +-.+..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 5899999999999999887654444 8899998988877665544233211100 111111111 112333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|. ......+..++++|+++.++...
T Consensus 230 g~-~~~~~~~~~l~~~G~iv~~G~~~ 254 (338)
T cd08295 230 GG-KMLDAVLLNMNLHGRIAACGMIS 254 (338)
T ss_pred CH-HHHHHHHHHhccCcEEEEecccc
Confidence 33 34566777888899999887543
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.025 Score=54.95 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCC----------------chHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 184 PSERVAVVTGAN----------------KGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 184 L~gKvaLITGas----------------sGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
|+||+||||+|. |-||.++|++|+++ |+.|+++++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 478999999986 99999999999999 8999988764
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.058 Score=55.27 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCc----cHHHHHHHH-------HhhhHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP----FAIQAEKTI-------LTNYLG 254 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~-------~vN~~g 254 (484)
|+++||+||+||+|...+.-.... |+.++++..+.++.+ ...++..+..... ..+...+.. -.+..|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 899999999999998666544444 657666666666555 4444433211111 112221111 122233
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.-.+.+ .+..++++|+++.+....+
T Consensus 221 ~~~~~~-~l~~l~~~G~lv~ig~~~g 245 (326)
T COG0604 221 GDTFAA-SLAALAPGGRLVSIGALSG 245 (326)
T ss_pred HHHHHH-HHHHhccCCEEEEEecCCC
Confidence 333333 5556777899999988775
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.038 Score=59.55 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=40.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
.++++|+++|+|+ ||+|++++..|++. |++|++++|+.+++++..+.+
T Consensus 328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~-G~~V~i~~R~~~~~~~la~~~ 375 (477)
T PRK09310 328 IPLNNQHVAIVGA-GGAAKAIATTLARA-GAELLIFNRTKAHAEALASRC 375 (477)
T ss_pred CCcCCCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh
Confidence 4678999999996 69999999999998 789999999988777665543
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.093 Score=52.59 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccH-HHHHHH----------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFA-IQAEKT----------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~-~~~~~~----------~~vN~~ 253 (484)
.+++++|+|++++||.++++.+... |.+|+++++++++.+.+ ..+.......... +..+.. .-+|..
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 243 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERA-KELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHV 243 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH-HHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence 5789999999999999999988887 88999999887765543 2221110000000 111110 112222
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ......+..++++|+++++++...
T Consensus 244 g~-~~~~~~~~~l~~~G~~v~~~~~~~ 269 (342)
T cd08266 244 GA-ATWEKSLKSLARGGRLVTCGATTG 269 (342)
T ss_pred cH-HHHHHHHHHhhcCCEEEEEecCCC
Confidence 22 233455667778899999987655
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.07 Score=54.28 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=55.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHH------HHhhhHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~------~~vN~~g 254 (484)
|++++|+||++|+|.+++...... |+ +|+.+++++++.+.+.+++.... ......+..... .-.+..|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g 233 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG 233 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC
Confidence 389999999999999877654445 77 79999988877665554443220 001111111111 1122233
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ 278 (484)
.-. ....+..++++|+++.++..
T Consensus 234 ~~~-~~~~~~~l~~~G~iv~~G~~ 256 (345)
T cd08293 234 GEI-SDTVISQMNENSHIILCGQI 256 (345)
T ss_pred cHH-HHHHHHHhccCCEEEEEeee
Confidence 222 46667788889999988743
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.048 Score=52.94 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=26.4
Q ss_pred CEEEEEcC-CchHHHHHHHHHHhcCCCeEEEEec
Q psy8786 187 RVAVVTGA-NKGLGFGIVKSLCEQFDGYIYLTAR 219 (484)
Q Consensus 187 KvaLITGa-ssGIG~aiA~~La~~gga~Vvl~~R 219 (484)
.+=.||.. +||||+++|++|+++ |++|+++++
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~-Ga~Vvlv~~ 47 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSA-GHEVTLVTT 47 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHC-CCEEEEEcC
Confidence 44556665 679999999999999 899998875
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.067 Score=55.04 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCC---C-C-ccHHHHHHH------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAS---T-V-PFAIQAEKT------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~---~-~-~~~~~~~~~------~~vN~~ 253 (484)
.|++++|+||++++|..++...... |++|+.+++++++.+.+.+++..... . . ...+..... .-.+..
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 5889999999999999877655555 88899888888776654433432200 0 0 111111111 112233
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ......+..++++|+++.++...+
T Consensus 237 G~-~~~~~~~~~l~~~G~iv~~G~~~~ 262 (348)
T PLN03154 237 GG-DMLDAALLNMKIHGRIAVCGMVSL 262 (348)
T ss_pred CH-HHHHHHHHHhccCCEEEEECcccc
Confidence 33 245666778888999998875443
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.05 Score=54.56 Aligned_cols=49 Identities=20% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
++++|+++|-|+ ||.|++++..|++.|..+|+++.|+.+++++.++++.
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~ 170 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV 170 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh
Confidence 467899999976 8999999999999844579999999998888877654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.073 Score=54.53 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--CCC-CccHHHHH--HHHHhhhHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--AST-VPFAIQAE--KTILTNYLGLVRTC 259 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--~~~-~~~~~~~~--~~~~vN~~g~~~l~ 259 (484)
.|+.++|+|++ |+|...++ +|+.-|++|++.+|++++.+.+.+.-... ... ....+... ...-++..+ -...
T Consensus 166 pG~~V~I~G~G-GlGh~avQ-~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~ 242 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQ-YAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL 242 (339)
T ss_pred CCCEEEEECCc-HHHHHHHH-HHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH
Confidence 58999999999 99965554 55533799999999999877654432222 111 11112222 222345556 6667
Q ss_pred HHHHHhhhcCCEEEEEeCCC
Q psy8786 260 VFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 260 ~allp~l~~~grIV~iSS~a 279 (484)
...++.++++|+++.++-..
T Consensus 243 ~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 243 EPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 77888899999999987664
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.067 Score=53.83 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCC---C-CccHHHHHHH------HHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAS---T-VPFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~---~-~~~~~~~~~~------~~vN~~g 254 (484)
.|.+++|+||++++|.+++...... |++|+.+++++++.+.+.+ +..... . ....+..... .-.+..|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-LGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC
Confidence 5789999999999998876655555 8899999988776554433 322100 0 1111111111 1122333
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ 278 (484)
. ...+..+..++.+|+++.++..
T Consensus 221 ~-~~~~~~~~~l~~~G~iv~~g~~ 243 (329)
T cd08294 221 G-EFSSTVLSHMNDFGRVAVCGSI 243 (329)
T ss_pred H-HHHHHHHHhhccCCEEEEEcch
Confidence 3 3446667778888999988654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.14 Score=51.72 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH-----HHHhhhHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK-----TILTNYLGLV 256 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~vN~~g~~ 256 (484)
.++.|++++|.|. |++|+.++..|.+. |++|++++|+.++.+.+. .+. ......++... .+-+|.....
T Consensus 148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~-~~G---~~~~~~~~l~~~l~~aDiVI~t~p~~ 221 (296)
T PRK08306 148 ITIHGSNVLVLGF-GRTGMTLARTLKAL-GANVTVGARKSAHLARIT-EMG---LSPFHLSELAEEVGKIDIIFNTIPAL 221 (296)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH-HcC---CeeecHHHHHHHhCCCCEEEECCChh
Confidence 4568999999997 67999999999998 789999999976543322 211 10001111111 1223444444
Q ss_pred HHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 257 RTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 257 ~l~~allp~l~~~grIV~iSS~ag 280 (484)
.+.+..+..|++++.||.+++..+
T Consensus 222 ~i~~~~l~~~~~g~vIIDla~~pg 245 (296)
T PRK08306 222 VLTKEVLSKMPPEALIIDLASKPG 245 (296)
T ss_pred hhhHHHHHcCCCCcEEEEEccCCC
Confidence 566777777888888888888765
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.042 Score=56.32 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHh-cCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHHHhhhHH---HHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCE-QFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTILTNYLG---LVRTCV 260 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~-~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vN~~g---~~~l~~ 260 (484)
.|.+++|+|+ |+||...+..+.+ .|+.+|+++++++++.+.+.+ ...........++.....-++..| .-...+
T Consensus 163 ~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~~~ 240 (341)
T cd08237 163 DRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADETYLIDDIPEDLAVDHAFECVGGRGSQSAIN 240 (341)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCceeehhhhhhccCCcEEEECCCCCccHHHHH
Confidence 5789999996 9999988776664 435679999998877665432 111100000001000011123344 223456
Q ss_pred HHHHhhhcCCEEEEEeC
Q psy8786 261 FLFPLLRRHARVVNLSS 277 (484)
Q Consensus 261 allp~l~~~grIV~iSS 277 (484)
..+..++++|+++.++-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 67778888999998874
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.076 Score=53.33 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
++++|+++|-|+ ||.|++++..|++.|-.+|++++|+.+++++..+++..
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~ 173 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNA 173 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence 567899999996 67999999999998334899999999998888777754
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.079 Score=53.18 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=41.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
++++|+++|-|+ ||-|++++..|++.|..+|+++.|+.+++++..+.+.
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~ 172 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVIN 172 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 467899999997 7899999999999844579999999999888877664
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.051 Score=57.53 Aligned_cols=92 Identities=18% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH--HHHhhhHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK--TILTNYLGLVRTC 259 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~vN~~g~~~l~ 259 (484)
..+.||+++|.|. |.||+.+|+.+... |++|+++++++.+..++... +......++... .+-+...|...++
T Consensus 208 ~~l~Gk~VlViG~-G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----G~~v~~l~eal~~aDVVI~aTG~~~vI 281 (425)
T PRK05476 208 VLIAGKVVVVAGY-GDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----GFRVMTMEEAAELGDIFVTATGNKDVI 281 (425)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----CCEecCHHHHHhCCCEEEECCCCHHHH
Confidence 4579999999997 58999999999988 88999999988765443221 111111111110 0112233444444
Q ss_pred H-HHHHhhhcCCEEEEEeCCC
Q psy8786 260 V-FLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 260 ~-allp~l~~~grIV~iSS~a 279 (484)
. ..+..|++++.++|++...
T Consensus 282 ~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 282 TAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred HHHHHhcCCCCCEEEEcCCCC
Confidence 3 5667788788888877654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.09 Score=48.63 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
.++.||+++|.|++.-+|..+|+.|.++ |++|+++.|+.+++.+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~~~~l~~ 83 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSKTKNLKE 83 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECCchhHHH
Confidence 4689999999999666799999999998 7899999998655443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.1 Score=54.44 Aligned_cols=44 Identities=27% Similarity=0.417 Sum_probs=38.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+.+||-|+ ||||+.+|..|++.+..+|++++|+.++++++.+..
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~ 45 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI 45 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence 46899998 999999999999994479999999999888776654
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.22 Score=49.99 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCC-ccHHHHHHH------HHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STV-PFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~------~~vN~~g 254 (484)
.|.+++|.|+++++|.+++..+.+. |.+|+.++++.++.+.+.+.+.... ... ...+..... .-++..|
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g 223 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVG 223 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcch
Confidence 5789999999999999988877666 8899999888776555433232110 000 011111111 1123334
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
. ..++..+..++++|+++.++...+
T Consensus 224 ~-~~~~~~~~~l~~~G~~v~~g~~~~ 248 (329)
T cd05288 224 G-EILDAALTLLNKGGRIALCGAISQ 248 (329)
T ss_pred H-HHHHHHHHhcCCCceEEEEeeccC
Confidence 3 355666777888899998876544
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.28 Score=50.31 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCC---CCccHHHHHHHH-------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAS---TVPFAIQAEKTI------------- 248 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~------------- 248 (484)
.|++++|.|+ ++||..++...... |++|+++++++++.+.+ .++..... .....+++...+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMM-KGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHH-HHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 5889999999 99999887766666 77899999988876644 33432100 111111221111
Q ss_pred --HhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 249 --LTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 249 --~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
-.+..|.-...+.++..++++|+++.++...
T Consensus 243 d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~ 275 (349)
T TIGR03201 243 WKIFECSGSKPGQESALSLLSHGGTLVVVGYTM 275 (349)
T ss_pred CEEEECCCChHHHHHHHHHHhcCCeEEEECcCC
Confidence 1122333345566777888899999887543
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.12 Score=51.87 Aligned_cols=97 Identities=18% Similarity=0.089 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHH-----------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTI-----------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~vN~~ 253 (484)
.|+|++|+||++..| ++|-++|+..|++|+.++-.+++.+-+.+++.-+.....-.+++...+ --|+-
T Consensus 150 ~GetvvVSaAaGaVG-svvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG 228 (340)
T COG2130 150 AGETVVVSAAAGAVG-SVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG 228 (340)
T ss_pred CCCEEEEEecccccc-hHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC
Confidence 699999999999999 567778887799999999888887766665543311111111221111 12444
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCccccc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAGHLSQ 284 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag~~~~ 284 (484)
|. +..++++.|...+||+...-++.+..+
T Consensus 229 g~--v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 229 GE--VLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred ch--HHHHHHHhhccccceeeeeehhhcCCC
Confidence 43 356788888888999998877775444
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.096 Score=53.58 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHH--------HhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTI--------LTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~vN~~g~ 255 (484)
.|++++|+|+ +++|...+..+... |+ +|+++++++++.+.+ .++..........+++.... -.+..|.
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLA-REMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHH-HHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 6899999986 89999888655555 66 688899988876644 33432211111111111111 1222333
Q ss_pred HHHHHHHHHhhhcCCEEEEEeC
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS 277 (484)
-...+.++..++++|+++.++.
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEEcc
Confidence 3345667778888999998864
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.12 Score=54.77 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+++||+++|-|+ ||+|+++++.|++.|..+|+++.|+.+++++..+++
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~ 225 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF 225 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh
Confidence 578999999998 899999999999984457999999988887776665
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.12 Score=52.02 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCcc-H----HHHHHHHHhhhHHH----
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPF-A----IQAEKTILTNYLGL---- 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~-~----~~~~~~~~vN~~g~---- 255 (484)
.||.+.|+|+++ || .+|-++|++=|.+|++.++...+-+++.+.+..+.....+ + +....+++--+.+.
T Consensus 181 pG~~vgI~GlGG-LG-h~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LG-HMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA 258 (360)
T ss_pred CCcEEEEecCcc-cc-hHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc
Confidence 799999999987 99 5777788776889999999988888888888766332222 2 22222222111111
Q ss_pred HHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS~ag 280 (484)
..-...++.++|.+|++|.++-...
T Consensus 259 ~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 259 EHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ccchHHHHHHhhcCCEEEEEeCcCC
Confidence 2223345556788899999876554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.81 Score=40.90 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=57.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc----------------------------CCCC
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR----------------------------ASTV 238 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~----------------------------~~~~ 238 (484)
.+.|.|++|.+|.++|..|+..+-+ .+++.|++++.++..+.++... +...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc
Confidence 3889999999999999999987333 5999999988777666666543 1111
Q ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 239 ~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
...+.....++.|..-...+.+.+..+- +.+.++.++.
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtN 119 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTN 119 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SS
T ss_pred cccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCC
Confidence 1112344556666655555555554432 3566666643
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.056 Score=57.73 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH--HHHhhhHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK--TILTNYLGLVRT 258 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~vN~~g~~~l 258 (484)
...+.||+++|.|.+ .||+.+|+.+... |++|+++++++.+..++... +......++.-. .+-+...|+..+
T Consensus 249 ~~~LaGKtVgVIG~G-~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~~~----G~~~~~leell~~ADIVI~atGt~~i 322 (476)
T PTZ00075 249 DVMIAGKTVVVCGYG-DVGKGCAQALRGF-GARVVVTEIDPICALQAAME----GYQVVTLEDVVETADIFVTATGNKDI 322 (476)
T ss_pred CCCcCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHhc----CceeccHHHHHhcCCEEEECCCcccc
Confidence 357899999999977 4999999999988 88999998887654332221 111111111100 001112233333
Q ss_pred H-HHHHHhhhcCCEEEEEeCC
Q psy8786 259 C-VFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 259 ~-~allp~l~~~grIV~iSS~ 278 (484)
+ +..+..|++++.++|++-.
T Consensus 323 I~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 323 ITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred cCHHHHhccCCCcEEEEcCCC
Confidence 3 4667778888888887543
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.2 Score=50.27 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
.+.+||.++|-|| ||-+++++..|++.|..+|+++.|+.++++++++.+...
T Consensus 122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~ 173 (283)
T COG0169 122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGEL 173 (283)
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence 4567899999986 589999999999994468999999999999988877654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.25 Score=50.55 Aligned_cols=135 Identities=16% Similarity=0.055 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHH--H---H---------------HHHHHhc-------CC
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGA--E---A---------------VQVLKDR-------AS 236 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~--~---~---------------~~~l~~~-------~~ 236 (484)
..+.|.|||++|.+|..+|..|+..+-+ .++++|+++...+ + + .+.+.+. +.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3467999999999999999999965333 6899998762111 1 0 0111111 11
Q ss_pred CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcc
Q psy8786 237 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315 (484)
Q Consensus 237 ~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (484)
.......++..+..|+.....+.+.+.++= . .+++.++|.-.. ..+..........
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p-~aivivvSNPvD~~~~i~t~~~~~~s--------------------- 153 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHC-P-NALVNIISNPVNSTVPIAAEVLKKAG--------------------- 153 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-C-CeEEEEeCCCccccHHHHHHHHHHcC---------------------
Confidence 111124577788888888777776665542 2 345555554332 1111100000000
Q ss_pred cccCCCCChhhHHhHHHHHHHHHHHHHHhh
Q psy8786 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345 (484)
Q Consensus 316 ~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela 345 (484)
+..+...|+.++.-...|...+|.++.
T Consensus 154 ---~~p~~~viG~~~LDs~Rl~~~lA~~lg 180 (323)
T PLN00106 154 ---VYDPKKLFGVTTLDVVRANTFVAEKKG 180 (323)
T ss_pred ---CCCcceEEEEecchHHHHHHHHHHHhC
Confidence 001225788888777788888888775
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.29 Score=49.25 Aligned_cols=93 Identities=16% Similarity=0.062 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCC-ccHHHHHHH------HHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STV-PFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~------~~vN~~g 254 (484)
.|.+++|.|+++++|.+++...... |.+|+++.+++++.+.+ .++.... ... ...+..... .-+|..|
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~-g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g 216 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLA-GCHVIGTCSSDEKAEFL-KSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVG 216 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHH-HHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCc
Confidence 5789999999999999877766665 88899888887765544 3332110 000 111111110 1123333
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
. ......+..++.+|++|.++...+
T Consensus 217 ~-~~~~~~~~~l~~~g~~v~~g~~~~ 241 (329)
T cd08250 217 G-EMFDTCVDNLALKGRLIVIGFISG 241 (329)
T ss_pred H-HHHHHHHHHhccCCeEEEEecccC
Confidence 3 345556667778899999876543
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.37 Score=48.32 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCcc---HHHHHHH------HHhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPF---AIQAEKT------ILTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~---~~~~~~~------~~vN~~g~ 255 (484)
.+++++|.|+++++|.+++...... |.+|+++++++++.+.+ .++......... .+.+... .-.+..|.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~ 223 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKL-GYEVVASTGKADAADYL-KKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG 223 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC-CCeEEEEecCHHHHHHH-HHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH
Confidence 4679999999999999987766666 88999999888776554 333211000000 0111110 01223333
Q ss_pred HHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS~ 278 (484)
......+..++.+|+++.++..
T Consensus 224 -~~~~~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 224 -KTLAYLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred -HHHHHHHHHhhcCCEEEEEeec
Confidence 3455567777888999988754
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.23 Score=44.53 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.++|-|.+.-+|+.++..|.++ |+.|.+++++..++++.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~t~~l~~~ 68 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKTIQLQSK 68 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCCCcCHHHH
Confidence 46789999999999999999999999998 89999998776655544
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.61 Score=47.24 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=35.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.+.|.|+ |++|.++|..|+..+- ..|+++++++++++....++.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~ 46 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLE 46 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHH
Confidence 4778886 8999999999999832 379999999988776666653
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.054 Score=57.77 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHH--HHHHhhhHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAE--KTILTNYLGLVRT 258 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~vN~~g~~~l 258 (484)
+..+.||+++|.|.+ .||+.+|+.+... |++|+++++++.+..++... +......++.- ..+-+...|...+
T Consensus 249 ~i~LaGKtVvViGyG-~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv~leEal~~ADVVI~tTGt~~v 322 (477)
T PLN02494 249 DVMIAGKVAVICGYG-DVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVLTLEDVVSEADIFVTTTGNKDI 322 (477)
T ss_pred CCccCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeeccHHHHHhhCCEEEECCCCccc
Confidence 345799999999976 8999999999887 88999999987654433221 01000111110 1111233454444
Q ss_pred -HHHHHHhhhcCCEEEEEeCC
Q psy8786 259 -CVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 259 -~~allp~l~~~grIV~iSS~ 278 (484)
....+..|++++.++|++..
T Consensus 323 I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 323 IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred hHHHHHhcCCCCCEEEEcCCC
Confidence 36677788888999998653
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.13 Score=54.41 Aligned_cols=90 Identities=26% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH--HHHhhhHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK--TILTNYLGLVRTC 259 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~vN~~g~~~l~ 259 (484)
..+.||+|+|.|++ .||+.+|+.+... |++|+++++++.+++.+... +......++.-. .+-+...|.-.++
T Consensus 198 ~~l~GktVvViG~G-~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~~~~e~v~~aDVVI~atG~~~~i 271 (413)
T cd00401 198 VMIAGKVAVVAGYG-DVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVMTMEEAVKEGDIFVTTTGNKDII 271 (413)
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEccHHHHHcCCCEEEECCCCHHHH
Confidence 45789999999976 6999999998888 88999999998776654331 111111111000 1112233444444
Q ss_pred H-HHHHhhhcCCEEEEEeC
Q psy8786 260 V-FLFPLLRRHARVVNLSS 277 (484)
Q Consensus 260 ~-allp~l~~~grIV~iSS 277 (484)
. ..+..|++++.+++++.
T Consensus 272 ~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred HHHHHhcCCCCcEEEEeCC
Confidence 3 44778888899999874
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.46 Score=47.12 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
++++++|+|+++++|.+++..+... |++|++++++.++.+.+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~-g~~v~~~~~~~~~~~~~ 185 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAA-GATVIATTRTSEKRDAL 185 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHH
Confidence 5789999999999999999988887 88999998887665544
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.25 Score=47.57 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCC---Cc-cHHHHH------HHHHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAST---VP-FAIQAE------KTILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~---~~-~~~~~~------~~~~vN~~g 254 (484)
.|++++|+|+++ +|.++++.+... |.+|+++++++++.+.+ +++...... .. ..+... ...-+|..+
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAA-GARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHc-CCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 678999999998 999998877666 78999999987665543 222111000 00 001110 000112222
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.....+.++..++++|+++.++....
T Consensus 211 ~~~~~~~~~~~l~~~G~~v~~~~~~~ 236 (271)
T cd05188 211 GPETLAQALRLLRPGGRIVVVGGTSG 236 (271)
T ss_pred CHHHHHHHHHhcccCCEEEEEccCCC
Confidence 22345666777788899998887654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.22 Score=47.88 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
|+||||+|.+|+.+++.|++. +..|.+..|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TGCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-CCCcEEEEeccc
Confidence 689999999999999999997 889999999974
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.44 Score=47.19 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
.|++++|+|+++++|.+++..+... |++|+++.+++++.+.
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~ 179 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAF-GARVFTTAGSDEKCAA 179 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence 5789999999999999988877777 8899999888776553
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.32 Score=49.00 Aligned_cols=50 Identities=22% Similarity=0.103 Sum_probs=39.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~ 232 (484)
.++++|+++|-|+ ||-+++++-.|+..|..+|+++.|+.+ ++++..+.+.
T Consensus 120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 4678999999997 566999999999984458999999954 6666655553
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.28 Score=52.34 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=35.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
++.|.||.|+||.++|+.|.+. |.+|++++|+.+..++...+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-G~~V~v~~r~~~~~~~~a~~ 43 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-GFEVIVTGRDPKKGKEVAKE 43 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHH
Confidence 4899999999999999999998 78999999998765444433
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.37 Score=50.28 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC-CCCccHHHHHHHH-----HhhhH---
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA-STVPFAIQAEKTI-----LTNYL--- 253 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-----~vN~~--- 253 (484)
.+.++.++|.|+ |.+|+.+++.+.+. |++|++++|+.++++.+...+.... ......+.+...+ -+|..
T Consensus 164 ~l~~~~VlViGa-G~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 164 GVEPGDVTIIGG-GVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CCCCceEEEEcC-CHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 356677999987 68999999999988 7899999999887666544432210 0001112222111 12221
Q ss_pred ---HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 ---GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 ---g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.+..+.+..+..|++++.||.++...|
T Consensus 242 g~~~p~lit~~~l~~mk~g~vIvDva~d~G 271 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQMKPGAVIVDVAIDQG 271 (370)
T ss_pred CCCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence 122244566666777777777776544
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.25 Score=51.66 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG 224 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~ 224 (484)
+.|+|||||++.++|..+|+.|.+. |.+|++++.+....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA-GHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHH
Confidence 4589999999999999999999998 89999998886543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.27 Score=49.11 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=37.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+|+++|-|+ ||-+++++..|++.|..+|+++.|+.+++++.++.+
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~ 166 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY 166 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence 578999985 899999999999984447999999998887766543
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.44 Score=55.32 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
..|..+|+||=+|.|+++|.-|..+|..+++++.|+-
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsG 1803 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSG 1803 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEecccc
Confidence 3488999999999999999999999444688888864
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.6 Score=47.38 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHHH----------hhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTIL----------TNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------vN~~ 253 (484)
.|++++|+|+ +++|..++..+... |++ |+++++++++.+.+ .++..........++.+...+ ++..
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~-~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARAL-GAEDVIGVDPSPERLELA-KALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHH-HHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 5889999986 89999987766666 777 99998888776544 344321100011111111111 1222
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
|.-......+..++.+|+++.++..
T Consensus 240 g~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 240 GNTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred CCHHHHHHHHHHhhcCCEEEEEcCC
Confidence 3333445566778888999988754
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.34 Score=48.64 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
..+++||.|+|.|.|.=+|+.+|..|.++ ++.|+++.+...+++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~t~~l~ 196 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSRSKDMA 196 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCchhHH
Confidence 45789999999999999999999999998 899999988765443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.31 Score=49.55 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=41.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
++.+++++|.|+ |.||+.+++.|...++.+|++++|+.++.++..+++.
T Consensus 175 ~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g 223 (311)
T cd05213 175 NLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG 223 (311)
T ss_pred CccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC
Confidence 368899999987 8999999999998745689999999988877766653
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.22 Score=46.81 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCC----------------chHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 184 PSERVAVVTGAN----------------KGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 184 L~gKvaLITGas----------------sGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
|+||+||||+|. |-.|.++|++++.+ |+.|+++....
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TT
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCc
Confidence 478999999874 78999999999999 99999887763
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.35 Score=46.74 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHH--H-------------HHHHHHhcCCC---C-------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGA--E-------------AVQVLKDRAST---V------- 238 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~--~-------------~~~~l~~~~~~---~------- 238 (484)
+...+||||+-|-+|.++|..|-.+-|. .|++.+.-..... + -.+++--.... .
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfSALLS 122 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFSALLS 122 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhcccCCchhhhhhccccHHHhhcccccceeeeHHHHHH
Confidence 4467999999999999999998876444 5777664322110 0 01111000000 0
Q ss_pred -ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 239 -PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 239 -~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
.-+.......++|+.|.-++++.+..+ .-+ +++-|.-| .+..... ++ -+...
T Consensus 123 AvGE~NVpLA~~VNI~GvHNil~vAa~~---kL~-iFVPSTIGAFGPtSPR-----------NP-----------TPdlt 176 (366)
T KOG2774|consen 123 AVGETNVPLALQVNIRGVHNILQVAAKH---KLK-VFVPSTIGAFGPTSPR-----------NP-----------TPDLT 176 (366)
T ss_pred HhcccCCceeeeecchhhhHHHHHHHHc---Cee-EeecccccccCCCCCC-----------CC-----------CCCee
Confidence 001122345678999999988876553 123 44444333 3321110 00 00000
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEE-eCCccc
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAV-HPGYVA 364 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV-~PG~V~ 364 (484)
... |...|+.||--.+.+-+.+..++ |+.+-|+ -||.+.
T Consensus 177 IQR--PRTIYGVSKVHAEL~GEy~~hrF-------g~dfr~~rfPg~is 216 (366)
T KOG2774|consen 177 IQR--PRTIYGVSKVHAELLGEYFNHRF-------GVDFRSMRFPGIIS 216 (366)
T ss_pred eec--CceeechhHHHHHHHHHHHHhhc-------CccceecccCcccc
Confidence 111 34789999999999998887776 4444444 466664
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.28 Score=50.36 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC---chhHHHHHHHHHhcCCCCccHHHHHH-------HHHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD---KKKGAEAVQVLKDRASTVPFAIQAEK-------TILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~---~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~vN~~g 254 (484)
.|++++|+|+ |+||...+..+... |++|++++|+ +++.+ .++++..... ....+++.. ..-++..|
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~-~~~~~Ga~~v-~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLR-GFEVYVLNRRDPPDPKAD-IVEELGATYV-NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHH-HHHHcCCEEe-cCCccchhhhhhcCCCCEEEECcC
Confidence 6789999986 89999888654444 7899999984 44433 3333332211 111111111 01122233
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.-......+..++++|+++.++...+
T Consensus 248 ~~~~~~~~~~~l~~~G~~v~~G~~~~ 273 (355)
T cd08230 248 VPPLAFEALPALAPNGVVILFGVPGG 273 (355)
T ss_pred CHHHHHHHHHHccCCcEEEEEecCCC
Confidence 23345667778888999988876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.23 Score=50.61 Aligned_cols=89 Identities=8% Similarity=-0.071 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC---ccHHHHHHHHHhhhHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV---PFAIQAEKTILTNYLGLVRTCVF 261 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~vN~~g~~~l~~a 261 (484)
.|++++|+|+ +++|..++. +++..|++|+++++++++.+. .+++....... ...+..+..+ .+.+.-.....
T Consensus 165 ~g~~VlV~G~-g~iG~~a~~-~a~~~G~~vi~~~~~~~~~~~-a~~~Ga~~vi~~~~~~~~~~d~~i--~~~~~~~~~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGF-GGSAHLTAQ-VALAQGATVHVMTRGAAARRL-ALALGAASAGGAYDTPPEPLDAAI--LFAPAGGLVPP 239 (329)
T ss_pred CCCEEEEEcC-CHHHHHHHH-HHHHCCCeEEEEeCChHHHHH-HHHhCCceeccccccCcccceEEE--ECCCcHHHHHH
Confidence 5889999997 899987665 555547889999998877543 34443221110 0001111111 11222234566
Q ss_pred HHHhhhcCCEEEEEeCC
Q psy8786 262 LFPLLRRHARVVNLSSS 278 (484)
Q Consensus 262 llp~l~~~grIV~iSS~ 278 (484)
.+..++++|+++.++..
T Consensus 240 ~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 240 ALEALDRGGVLAVAGIH 256 (329)
T ss_pred HHHhhCCCcEEEEEecc
Confidence 77788889999988753
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.32 Score=48.02 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+++++|+|++++||.++++.+... |++|++++++++..+.+
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~-g~~v~~~~~~~~~~~~~ 180 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKAL-GARVIATAGSEEKLEAC 180 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHc-CCEEEEEcCCHHHHHHH
Confidence 5789999999999999999988888 88999999887765544
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.4 Score=44.83 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
+++.+.|+|+ |++|.++|..++..+-. .+++.|++++.++..+.++..
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~ 53 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSH 53 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHh
Confidence 5678999998 99999999999987333 699999998877666555553
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.33 Score=49.06 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCC---CC--ccHHHHHHH------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAS---TV--PFAIQAEKT------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~---~~--~~~~~~~~~------~~vN~~ 253 (484)
.|.+++|+||++++|..++...... |++|+.+++++++.+.+ .++..... .. ...+..... .-.+..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYL-KKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH-HHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 5789999999999999877654444 88999999887776554 33332100 00 011111111 111223
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|.- .....+..++++|+++.++...
T Consensus 216 G~~-~~~~~~~~l~~~G~iv~~G~~~ 240 (325)
T TIGR02825 216 GGE-FSNTVIGQMKKFGRIAICGAIS 240 (325)
T ss_pred CHH-HHHHHHHHhCcCcEEEEecchh
Confidence 332 3466677788899999887543
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.5 Score=48.39 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=28.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcC------CCeEEEEecCc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQF------DGYIYLTARDK 221 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~g------ga~Vvl~~R~~ 221 (484)
.++||||+|.||.+++..|+..+ +..|++.|+++
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPP 43 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCC
Confidence 48999999999999999999842 23799999854
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.28 Score=51.17 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l 231 (484)
|+|-|| |.+|+.+++.|+++... +|++++|+.+++++..+++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~ 43 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL 43 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc
Confidence 689999 99999999999998444 7999999999988887764
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.4 Score=47.98 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+.+++|+||++++|.++++.+... |.+|+++.+++++.+.+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 203 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTRSPEKLKIL 203 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHH
Confidence 5789999999999999999999888 88999888887665443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.52 Score=43.98 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=35.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
|.|-|+ |-+|+.+|..++.. |.+|++.+++++.+++..+.++.
T Consensus 2 V~ViGa-G~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGA-GTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES--SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcC-CHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHH
Confidence 667777 78999999999998 99999999999988877666654
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.38 Score=50.70 Aligned_cols=91 Identities=20% Similarity=0.117 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-ccHHHHHH-HHHhhhHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-PFAIQAEK-TILTNYLGLVRTC 259 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~vN~~g~~~l~ 259 (484)
..+.||+++|.|. |.||+.+|+.+... |++|+++++++.+..++... +... ...+.+.. .+-+...|...++
T Consensus 191 ~~l~Gk~VvViG~-G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~----G~~v~~leeal~~aDVVItaTG~~~vI 264 (406)
T TIGR00936 191 LLIAGKTVVVAGY-GWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD----GFRVMTMEEAAKIGDIFITATGNKDVI 264 (406)
T ss_pred CCCCcCEEEEECC-CHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc----CCEeCCHHHHHhcCCEEEECCCCHHHH
Confidence 4579999999995 56999999999887 88999999988664433221 1111 11111110 0112234455544
Q ss_pred H-HHHHhhhcCCEEEEEeCC
Q psy8786 260 V-FLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 260 ~-allp~l~~~grIV~iSS~ 278 (484)
. ..+..|++++.++|++..
T Consensus 265 ~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 265 RGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred HHHHHhcCCCCcEEEEECCC
Confidence 3 466778878888887655
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.42 Score=50.65 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
++.|++++|.|+ |.||..+++.|.+.|..+|++++|+.+++++..+++
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~ 224 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL 224 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 468899999997 899999999999983368999999988777666554
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.39 Score=44.02 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=35.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||+++|.|.|.-+|+-++..|.++ ++.|.++..+.+++++.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-~atVt~~h~~T~~l~~~ 76 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNK-GATVTICHSKTKNLQEI 76 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHT-T-EEEEE-TTSSSHHHH
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhC-CCeEEeccCCCCcccce
Confidence 45789999999999999999999999999 99999998877665544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.1 Score=46.47 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHH----------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTI----------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~vN~~ 253 (484)
.|++++|+|+ ++||..++...... |+ +|+++++++++.+-+ +++..........+++...+ -++..
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a-~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAA-GASQVVAVDLNEDKLALA-RELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHH-HHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 5789999985 89999876655555 77 688889888776644 33332111111111111111 11222
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
|.-...+..+..++++|+++.++..
T Consensus 268 G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 268 GSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CChHHHHHHHHHHhcCCEEEEEccC
Confidence 2223455566778889999988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.56 Score=48.19 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcC---CCCc-cHHHHHHH-------HHhhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRA---STVP-FAIQAEKT-------ILTNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~---~~~~-~~~~~~~~-------~~vN~ 252 (484)
.|++++|.|+ ++||..++...... |+ +|+++++++++.+.+ +++.... .... ..+..... .-++.
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALA-GASKIIAVDIDDRKLEWA-REFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH-HHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 5789999985 89999887755555 77 488888888776554 3332210 0011 11111111 11223
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
.|.-...+..+..++++|+++.++..
T Consensus 253 ~g~~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 253 VGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCCHHHHHHHHHHhccCCEEEEECCC
Confidence 33223445566777888999988754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.25 Score=41.63 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.+++||.+||.|| |.+|..-++.|++. |++|++++.+.
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~-gA~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEA-GAKVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCC-TBEEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEECCch
Confidence 4689999999998 77999999999998 89999998886
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.55 Score=47.18 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=36.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG 224 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~ 224 (484)
..+++||.|+|.|+++=.|+.++..|.++ |+.|+++.|..+.+
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~-gatVtv~~~~t~~L 196 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNA-NATVTICHSRTQNL 196 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCEEEEEeCCchhH
Confidence 46789999999999888999999999998 78999998854443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.2 Score=45.65 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchhHH--H---H---------------HHHHHhc-------CC
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKKGA--E---A---------------VQVLKDR-------AS 236 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~~~--~---~---------------~~~l~~~-------~~ 236 (484)
+.+.+.|||++|.||..+|..|+..+ ...++++|++....+ + + .+.+.+. +.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 44679999999999999999998652 236899998432221 1 0 0111111 11
Q ss_pred CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 237 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 237 ~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.......+...+..|+.....+.+++..+ ...++|.++|...
T Consensus 87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~--~~~~iviv~SNPv 128 (321)
T PTZ00325 87 PRKPGMTRDDLFNTNAPIVRDLVAAVASS--APKAIVGIVSNPV 128 (321)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH--CCCeEEEEecCcH
Confidence 11112345677888887777766665543 1246777777654
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.77 Score=42.70 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecC
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD 220 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~ 220 (484)
++.++.+.++|-||++-.|..+.+++++.+-. +|+++.|.
T Consensus 13 Df~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR 53 (238)
T KOG4039|consen 13 DFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRR 53 (238)
T ss_pred HHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEec
Confidence 35567888999999999999999999987333 68887775
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.53 Score=50.00 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l 231 (484)
++.|++++|.|+ |+||+.+++.|... |. +|++++|+.+++++..+++
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~-G~~~V~v~~r~~~ra~~la~~~ 226 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEK-GVRKITVANRTLERAEELAEEF 226 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHc
Confidence 468899999987 89999999999988 55 7999999988877666654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.64 Score=44.62 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=36.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
++.|.||+|.+|.++++.|++. |.+|++.+|++++.++..+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~~~~~~l~~~ 43 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDLEKAEEAAAK 43 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCHHHHHHHHHH
Confidence 3889999999999999999998 78999999998887665543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.75 E-value=1 Score=46.10 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=28.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC------eEEEEecCc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDK 221 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga------~Vvl~~R~~ 221 (484)
+.|.|+|++|.+|..+|..++..+-+ .+++.|.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 43 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ 43 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC
Confidence 46899999999999999999976333 588999854
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.5 Score=48.79 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-ccHHHHHHH-----HHhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-PFAIQAEKT-----ILTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~~~-----~~vN~~g~~~l 258 (484)
.|++++|.|+ ++||..++...... |++|++++.+.++..+..+++....... ...+.+... .-++..|.-..
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~ 260 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHA 260 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHH
Confidence 5789999775 89999987765555 7888888777665444444332210000 011111111 11222232234
Q ss_pred HHHHHHhhhcCCEEEEEeCC
Q psy8786 259 CVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS~ 278 (484)
.+..+..++++|+++.++..
T Consensus 261 ~~~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 261 LGPLLGLLKVNGKLITLGLP 280 (360)
T ss_pred HHHHHHHhcCCcEEEEeCCC
Confidence 45567778889999988643
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.64 Score=47.62 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=28.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC------eEEEEecCc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDK 221 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga------~Vvl~~R~~ 221 (484)
.+.||||+|.+|..++..|+..+-. .+++.|+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 3899999999999999999975323 389999987
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.76 Score=45.92 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCCC-ccHHHHHHH-------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---ASTV-PFAIQAEKT-------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~~-~~~~~~~~~-------~~vN~~ 253 (484)
.|.+++|.|++++||.+++...... |++|+++.++.++.+.+.+ +... .... ...+..... .-.+..
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 216 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAAR-GINVINLVRRDAGVAELRA-LGIGPVVSTEQPGWQDKVREAAGGAPISVALDSV 216 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHh-cCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECC
Confidence 5789999999999999988766665 8899888887776555433 2111 0000 001111111 002223
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
|.. ....++..++.+|+++.++..
T Consensus 217 g~~-~~~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 217 GGK-LAGELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred CCh-hHHHHHHhhcCCcEEEEEecC
Confidence 332 345566777778999888643
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.6 Score=47.21 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=40.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
..+++||.+.|.|.++=+|+.+|..|.++ |+.|+++.+.....++..
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~t~~l~e~~ 200 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSRSTDAKALC 200 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEECCCCCCHHHHH
Confidence 46789999999999999999999999998 899999988766555443
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.36 Score=46.93 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=28.8
Q ss_pred CEEEEEcCCch-HHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 187 RVAVVTGANKG-LGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 187 KvaLITGassG-IG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.+-.||+.|+| ||+++|++|+++ |++|++++|+.
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~-G~~V~li~r~~ 50 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAA-GHEVTLVTTKT 50 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhC-CCEEEEEECcc
Confidence 36678887766 999999999999 89999988764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.73 Score=46.27 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=35.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+|.|-|+ |-+|..+|..|+.. |..|++.+++++.++...+.+.
T Consensus 7 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGA-GQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred EEEEEcc-cHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHH
Confidence 4666676 68999999999998 8999999999998777555544
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.74 Score=37.66 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=34.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCC---CeEEEE-ecCchhHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFD---GYIYLT-ARDKKKGAEAVQVLK 232 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gg---a~Vvl~-~R~~~~~~~~~~~l~ 232 (484)
..+| |+|.+|.++++.|++. | .+|.++ .|++++.++..++..
T Consensus 2 I~iI--G~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 2 IGII--GAGNMGSALARGLLAS-GIKPHEVIIVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EEEE--STSHHHHHHHHHHHHT-TS-GGEEEEEEESSHHHHHHHHHHCT
T ss_pred EEEE--CCCHHHHHHHHHHHHC-CCCceeEEeeccCcHHHHHHHHHhhc
Confidence 3455 6788999999999998 7 788855 999999888777654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.68 Score=47.70 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.|++++|+|.|+ ||+|.++|+.|++.|-.+++++|++.
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 568899999996 68999999999999445899999874
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.63 Score=50.69 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l 231 (484)
++.+|+++|.|+ |++|+.+++.|... |. +|+++.|+.+++++..+++
T Consensus 263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~-G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 263 SHASARVLVIGA-GKMGKLLVKHLVSK-GCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCCCEEEEEeC-HHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHh
Confidence 478999999998 99999999999998 54 7999999998888776655
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.5 Score=50.37 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
+.+|+++|+|++ |+|.++|+.|+++ |+.|++.+.+..
T Consensus 3 ~~~~~~~v~G~g-~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLG-GTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 578999999986 8999999999998 899999887654
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.6 Score=44.47 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
..+++||.|+|.|| |.+|...++.|.+. |++|+++.++.
T Consensus 5 ~l~l~~k~vLVIGg-G~va~~ka~~Ll~~-ga~V~VIs~~~ 43 (202)
T PRK06718 5 MIDLSNKRVVIVGG-GKVAGRRAITLLKY-GAHIVVISPEL 43 (202)
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 35789999999998 67999999999998 78999887653
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.89 Score=45.61 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=37.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
..+++||.|+|.|.|.-+|+-+|..|.++ |+.|.++....+++.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~-gAtVtv~hs~t~~l~ 195 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNA-GASVSVCHILTKDLS 195 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHC-CCEEEEEeCCcHHHH
Confidence 46789999999999999999999999998 899998876555443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.76 Score=42.17 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
+..+.||+++|.|= +-+|+.+|+.|... |++|++++.++-++-++
T Consensus 18 ~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~-Ga~V~V~e~DPi~alqA 62 (162)
T PF00670_consen 18 NLMLAGKRVVVIGY-GKVGKGIARALRGL-GARVTVTEIDPIRALQA 62 (162)
T ss_dssp -S--TTSEEEEE---SHHHHHHHHHHHHT-T-EEEEE-SSHHHHHHH
T ss_pred ceeeCCCEEEEeCC-CcccHHHHHHHhhC-CCEEEEEECChHHHHHh
Confidence 35679999999985 57999999999998 89999999988654443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.72 Score=44.71 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecC
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARD 220 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~ 220 (484)
.++++++++|-|+ ||.|+++|..|++.|-. +|++++|+
T Consensus 21 ~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 21 KKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4578999999998 78999999999998434 69999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.3 Score=44.86 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHH--------HhhhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTI--------LTNYLGLV 256 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~vN~~g~~ 256 (484)
.|.+++|+|+++++|.++++..... |++|+++.++ ++ .+..+++............+...+ -++..|.-
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~-~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~ 238 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAW-GAHVTTTCST-DA-IPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD 238 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCc-ch-HHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH
Confidence 4899999999999999988876666 8888877764 22 223233221100000001111111 12222222
Q ss_pred HHHHHHHHhhhcCCEEEEEeC
Q psy8786 257 RTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 257 ~l~~allp~l~~~grIV~iSS 277 (484)
..+..+..+++.|+++.++.
T Consensus 239 -~~~~~~~~l~~~G~~v~~g~ 258 (350)
T cd08248 239 -TEKWALKLLKKGGTYVTLVS 258 (350)
T ss_pred -HHHHHHHHhccCCEEEEecC
Confidence 45566777788899998864
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.82 Score=37.01 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR 219 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R 219 (484)
.++++|+++|-|+ +++|+.++..+.+.++.+|.+++|
T Consensus 19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4578999999999 999999999999985567888888
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.83 Score=43.42 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.|++++|+|-| .||+|.++|+.|++.|-.+++++|.+.-
T Consensus 18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 56888999998 5689999999999995458999998743
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.1 Score=41.49 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
..++.||++.|.|. |.||+++|+.+..- |.+|+..+|......
T Consensus 31 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 31 GRELRGKTVGIIGY-GRIGRAVARRLKAF-GMRVIGYDRSPKPEE 73 (178)
T ss_dssp BS-STTSEEEEEST-SHHHHHHHHHHHHT-T-EEEEEESSCHHHH
T ss_pred ccccCCCEEEEEEE-cCCcCeEeeeeecC-CceeEEecccCChhh
Confidence 35689999999986 67999999999988 899999999977544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.52 Score=43.00 Aligned_cols=37 Identities=11% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR 219 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R 219 (484)
..+++||.|+|.||+ -+|...++.|.+. |++|++++.
T Consensus 8 ~l~l~~~~vlVvGGG-~va~rka~~Ll~~-ga~V~VIsp 44 (157)
T PRK06719 8 MFNLHNKVVVIIGGG-KIAYRKASGLKDT-GAFVTVVSP 44 (157)
T ss_pred EEEcCCCEEEEECCC-HHHHHHHHHHHhC-CCEEEEEcC
Confidence 468999999999976 5999999999998 899888853
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.1 Score=46.64 Aligned_cols=92 Identities=22% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-ccHHHHHHH-----HHhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-PFAIQAEKT-----ILTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~~~-----~~vN~~g~~~l 258 (484)
.|++++|.|+ ++||..++...... |++|++++++.++..+..+++....... ...+.+... .-++..|.-..
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~ 255 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 255 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH
Confidence 5789999986 89999987765555 8888888877554333333332210000 011111111 11122232234
Q ss_pred HHHHHHhhhcCCEEEEEeCC
Q psy8786 259 CVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS~ 278 (484)
.+..+..++++|+++.++..
T Consensus 256 ~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 256 LLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred HHHHHHhhcCCCEEEEEccC
Confidence 45566777888999988643
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.2 Score=44.49 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
+++|-++-|.||++.+|+-++.+|++- |.+|++-.|-.+
T Consensus 58 S~sGiVaTVFGAtGFlGryvvnklak~-GSQviiPyR~d~ 96 (391)
T KOG2865|consen 58 SVSGIVATVFGATGFLGRYVVNKLAKM-GSQVIIPYRGDE 96 (391)
T ss_pred cccceEEEEecccccccHHHHHHHhhc-CCeEEEeccCCc
Confidence 568899999999999999999999998 889999888544
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.81 Score=46.39 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCC-ccHHHHHHH----HHhhhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STV-PFAIQAEKT----ILTNYLGLV 256 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~----~~vN~~g~~ 256 (484)
.|++++|.| ++++|.+++..+... |.+|+++++++++.+.+ +++.... ... ...+..... .-++..|.-
T Consensus 163 ~~~~vlV~g-~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~ 239 (333)
T cd08296 163 PGDLVAVQG-IGGLGHLAVQYAAKM-GFRTVAISRGSDKADLA-RKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNA 239 (333)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHH-HHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCch
Confidence 578999999 799999887766665 88999999987765544 3333210 001 011111110 001122222
Q ss_pred HHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 257 RTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 257 ~l~~allp~l~~~grIV~iSS~a 279 (484)
......+..++.+|+++.++...
T Consensus 240 ~~~~~~~~~l~~~G~~v~~g~~~ 262 (333)
T cd08296 240 KAISALVGGLAPRGKLLILGAAG 262 (333)
T ss_pred HHHHHHHHHcccCCEEEEEecCC
Confidence 34555677777889999887643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.27 Score=50.50 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
..+.||++.|.|. |.||+++|+.|... |.+|++.+|+.+.
T Consensus 142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~-G~~V~~~d~~~~~ 181 (330)
T PRK12480 142 KPVKNMTVAIIGT-GRIGAATAKIYAGF-GATITAYDAYPNK 181 (330)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCChhH
Confidence 3579999999986 56999999999987 8899999998654
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.5 Score=44.69 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhc---CCCCccHHHHHHH--------HHhhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDR---ASTVPFAIQAEKT--------ILTNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~~~~~~~--------~~vN~ 252 (484)
.|++++|+| ++++|.+++...... |++ |+++++++++.+.+ +++... .......+.+... .-.+.
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALA-KSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH-HHcCCceEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 578999997 599999988766656 776 67888887776643 333221 0011111111111 11234
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
.|.-..+...+..++++|+++.++...
T Consensus 237 ~G~~~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 237 AGVPQTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEccCC
Confidence 444445566778888899999886543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.96 Score=46.62 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.|+.++|+|.|+ ||||..+|+.|++.|-.+|.++|.+.
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 567888999998 79999999999999555899999874
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=1 Score=45.16 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.++|.|-|.=+|+-++..|.++ ++.|+++.+....+++.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~-~atVtv~hs~T~~l~~~ 199 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLA-GCTVTVCHRFTKNLRHH 199 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHC-CCeEEEEECCCCCHHHH
Confidence 46789999999999999999999999988 89999998876655443
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.4 Score=45.21 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=53.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH------HHHhhhHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK------TILTNYLGL 255 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~vN~~g~ 255 (484)
.++.||++.|-|.+ .||.++|++|-.- |..+....|.....++..+...+. ...++-+.+ .+-.|-...
T Consensus 158 ~~~~gK~vgilG~G-~IG~~ia~rL~~F-g~~i~y~~r~~~~~~~~~~~~~~~---~d~~~~~~~sD~ivv~~pLt~~T~ 232 (336)
T KOG0069|consen 158 YDLEGKTVGILGLG-RIGKAIAKRLKPF-GCVILYHSRTQLPPEEAYEYYAEF---VDIEELLANSDVIVVNCPLTKETR 232 (336)
T ss_pred ccccCCEEEEecCc-HHHHHHHHhhhhc-cceeeeecccCCchhhHHHhcccc---cCHHHHHhhCCEEEEecCCCHHHH
Confidence 46799999999975 5999999999996 655666677665544443322210 001110000 000111111
Q ss_pred HHHHHHHHHhhhcCCEEEEEeC
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS 277 (484)
-.+-+.++..|++++.|||++=
T Consensus 233 ~liNk~~~~~mk~g~vlVN~aR 254 (336)
T KOG0069|consen 233 HLINKKFIEKMKDGAVLVNTAR 254 (336)
T ss_pred HHhhHHHHHhcCCCeEEEeccc
Confidence 2234567788998889998753
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.9 Score=43.58 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+.+++|.|+++++|.+++..+.+. |.+|+++.+++++.+.+
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELA 206 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHH
Confidence 5789999999999999988877766 88999999987765543
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.4 Score=47.47 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.++++|+|+|.|+ |++|.++|+.|+++ |..|++++++..
T Consensus 12 ~~~~~~~v~viG~-G~~G~~~A~~L~~~-G~~V~~~d~~~~ 50 (480)
T PRK01438 12 SDWQGLRVVVAGL-GVSGFAAADALLEL-GARVTVVDDGDD 50 (480)
T ss_pred cCcCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 3467899999996 67999999999988 889999986543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.1 Score=45.18 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDK 221 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~ 221 (484)
..+++||+|+|-|-++-+|+.+|..|+++ |+.|+++. |+.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~~rT~ 193 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAA-NATVTIAHSRTR 193 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhC-CCEEEEECCCCC
Confidence 35789999999999999999999999998 89999985 554
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.7 Score=45.21 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCCc--cHHHHHHHHH----------hh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP--FAIQAEKTIL----------TN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~----------vN 251 (484)
.|++++|+|+ ++||..++...... |+ .|+++++++++.+.+ +++........ ..+.+...+. ++
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a-~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLR-GASQIIGVDINPEKAEKA-KTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH-HHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 5899999985 89999987765555 66 577778777765543 33322100000 0012222111 22
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeCC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSSS 278 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS~ 278 (484)
..|.-......+..++++ |+++.++..
T Consensus 270 ~~G~~~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 270 CVGDTGIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred CCCChHHHHHHHHhhccCCCEEEEECCc
Confidence 334333445566777787 999887653
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.1 Score=44.88 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=38.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||+|+|.|.|.=+|+-++..|.++ ++.|+++.+..+++++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~-~atVt~~hs~t~~l~~ 197 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQA-GATVTICHSKTRDLAA 197 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEecCCCCCHHH
Confidence 36789999999999999999999999998 8999988776555443
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=88.05 E-value=2.4 Score=43.04 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=28.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDK 221 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~ 221 (484)
.+.|+|++|.+|..++..++.. |. .|++++|++
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~-g~~~~v~lvd~~~ 36 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKE-DVVKEINLISRPK 36 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCCEEEEEECcc
Confidence 5899999999999999999997 44 489999965
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.00 E-value=2 Score=43.76 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCC---C-CccHHHHHHH-------HHhhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAS---T-VPFAIQAEKT-------ILTNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~---~-~~~~~~~~~~-------~~vN~ 252 (484)
.|++++|+|+ +++|..++..+... |. +|+++++++++.+.+ .++..... . ....+.+... .-++.
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~-~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~ 248 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAA-GASKIIVSEPSEARRELA-EELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDC 248 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHH-HHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEEC
Confidence 5789999985 79999988776666 77 788888887776544 33322100 0 0111111111 11122
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
.|.-...+..+..++.+|+++.++...
T Consensus 249 ~g~~~~~~~~~~~l~~~G~~v~~g~~~ 275 (351)
T cd08233 249 AGVQATLDTAIDALRPRGTAVNVAIWE 275 (351)
T ss_pred CCCHHHHHHHHHhccCCCEEEEEccCC
Confidence 222234556667778889998887543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.98 E-value=2 Score=44.21 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~ 227 (484)
.|.+++|.|+ ++||...+...... |+ +|+++++++++.+.+
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~-G~~~vi~~~~~~~~~~~~ 228 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIR-GASRIIGVDLNPSKFEQA 228 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH
Confidence 5889999985 89999877765555 76 799999988776644
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.55 Score=47.29 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhcCCCCccH---HHHHHHHHhhhHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFA---IQAEKTILTNYLGLVRTCV 260 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~vN~~g~~~l~~ 260 (484)
.+++++|+| .|+||...+..+... |++ |+++++++++++.+.+. ....... ...+ .-++..|.-...+
T Consensus 144 ~~~~vlV~G-~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~~i~~~~~~~~g~D--vvid~~G~~~~~~ 215 (308)
T TIGR01202 144 KVLPDLIVG-HGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----EVLDPEKDPRRDYR--AIYDASGDPSLID 215 (308)
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----cccChhhccCCCCC--EEEECCCCHHHHH
Confidence 567899997 589999888655555 776 55667776665543221 0000000 0111 2233455444566
Q ss_pred HHHHhhhcCCEEEEEeCC
Q psy8786 261 FLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 261 allp~l~~~grIV~iSS~ 278 (484)
.++..++++|+++.++..
T Consensus 216 ~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 216 TLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHhhhcCcEEEEEeec
Confidence 778888999999988753
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.6 Score=45.87 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=33.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
..++.||++.|.|. |.||+++|+.|..- |.+|+.++|+.
T Consensus 194 ~~~L~gktVGIVG~-G~IG~~vA~~L~af-G~~V~~~d~~~ 232 (386)
T PLN03139 194 AYDLEGKTVGTVGA-GRIGRLLLQRLKPF-NCNLLYHDRLK 232 (386)
T ss_pred CcCCCCCEEEEEee-cHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 35789999999995 66999999999987 88999988874
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.1 Score=46.84 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.+++++|+|.|+ ||+|.++++.|++.|-.+++++|++.
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467788888865 79999999999999555899999884
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.4 Score=46.21 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.++.||++.|.|. |.||+++|+.|... |.+|+..+|..
T Consensus 188 ~~L~gktVGIvG~-G~IG~~vA~~l~~f-G~~V~~~dr~~ 225 (385)
T PRK07574 188 YDLEGMTVGIVGA-GRIGLAVLRRLKPF-DVKLHYTDRHR 225 (385)
T ss_pred eecCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEECCCC
Confidence 4689999999997 55999999999887 88999999875
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.2 Score=45.50 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.++.||++.|-|- |.||+++|+.+..- |.+|+..+|..
T Consensus 143 ~~l~gktvgIiG~-G~IG~~va~~l~~f-g~~V~~~~~~~ 180 (314)
T PRK06932 143 TDVRGSTLGVFGK-GCLGTEVGRLAQAL-GMKVLYAEHKG 180 (314)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHhcC-CCEEEEECCCc
Confidence 3689999999986 67999999998776 88998887753
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.6 Score=44.76 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=34.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
..++.||++-|-| .|.||+++|+.+..- |.+|+..+|+..
T Consensus 141 ~~~l~gktvGIiG-~GrIG~avA~r~~~F-gm~v~y~~~~~~ 180 (324)
T COG1052 141 GFDLRGKTLGIIG-LGRIGQAVARRLKGF-GMKVLYYDRSPN 180 (324)
T ss_pred ccCCCCCEEEEEC-CCHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence 4578999999998 567999999999854 889999998864
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.66 E-value=1 Score=43.66 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=34.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
|.++|-|+++ +|+.+|+.|.++ |.+|++++++++..++...
T Consensus 1 m~iiIiG~G~-vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGR-VGRSVARELSEE-GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcH-HHHHHHHHHHhC-CCceEEEEcCHHHHHHHhh
Confidence 3577887765 899999999999 8999999999998877444
|
|
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.5 Score=43.46 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCc----cHHHHHHHHHhhhHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP----FAIQAEKTILTNYLGLVRTCV 260 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~vN~~g~~~l~~ 260 (484)
.|.+++|+|+++++|.+++..+... |++|+.+++++++.+.+.+ +........ .....+ +-.+..|.- ...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d--~vl~~~g~~-~~~ 206 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALA-GAHVVAVVGSPARAEGLRE-LGAAEVVVGGSELSGAPVD--LVVDSVGGP-QLA 206 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCcEEEeccccccCCCce--EEEECCCcH-HHH
Confidence 5899999999999999988877777 8899999988776655433 321100000 000111 112233332 345
Q ss_pred HHHHhhhcCCEEEEEeCC
Q psy8786 261 FLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 261 allp~l~~~grIV~iSS~ 278 (484)
..+..++.+|++|.++..
T Consensus 207 ~~~~~l~~~G~~v~~g~~ 224 (305)
T cd08270 207 RALELLAPGGTVVSVGSS 224 (305)
T ss_pred HHHHHhcCCCEEEEEecc
Confidence 567777788999988754
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.4 Score=44.25 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=39.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..++.||.|+|.|.|.=+|+-++..|.++ ++.|.++.....++++
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~-~atVtv~hs~T~~l~~ 203 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNR-NATVSVCHVFTDDLKK 203 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHC-CCEEEEEeccCCCHHH
Confidence 46789999999999999999999999998 8999999876655544
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.83 Score=44.82 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG 224 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~ 224 (484)
.|++++|+|.|+ ||+|.++++.|+..|-.++.++|.+.-..
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~ 69 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSL 69 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECc
Confidence 568899999998 89999999999999556899998875433
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.6 Score=43.79 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=38.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||+|+|.|.|.=+|+-++..|.++ ++.|+++......+++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-~atVt~chs~t~~l~~ 197 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNE-NATVTYCHSKTKNLAE 197 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEeCCchhHHH
Confidence 46789999999999999999999999998 8999988766554443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.3 Score=45.23 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
.++.||++.|-|- |.||+++|+.+..- |.+|+..+|.
T Consensus 144 ~~l~gktvgIiG~-G~IG~~vA~~l~~f-gm~V~~~~~~ 180 (317)
T PRK06487 144 VELEGKTLGLLGH-GELGGAVARLAEAF-GMRVLIGQLP 180 (317)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHhhC-CCEEEEECCC
Confidence 3689999999996 67999999998876 8899988875
|
|
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=3.4 Score=41.43 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCCC-ccHHHHHHH-------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---ASTV-PFAIQAEKT-------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~~-~~~~~~~~~-------~~vN~~ 253 (484)
.|.+++|.||++++|.+++...-.. |++|+.+++++++.+.+ +++... .... ...+..... .-++..
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~-G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~ 217 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGSAQKAQRA-KKAGAWQVINYREENIVERVKEITGGKKVRVVYDSV 217 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH-HHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECC
Confidence 5789999999999999987655555 88998888877765543 333211 0000 111111111 011223
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+. ......+..++++|+++.++...
T Consensus 218 ~~-~~~~~~~~~l~~~g~~v~~g~~~ 242 (327)
T PRK10754 218 GK-DTWEASLDCLQRRGLMVSFGNAS 242 (327)
T ss_pred cH-HHHHHHHHHhccCCEEEEEccCC
Confidence 33 23445667777889999887543
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=1.4 Score=44.04 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=37.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
..+++||.++|.|.|.-+|+-++..|.++ ++.|.++....++++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-~AtVti~hs~T~~l~ 195 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNA-NATVDICHIFTKDLK 195 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCCcCHH
Confidence 46889999999999999999999999988 899998876555544
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=86.86 E-value=1.2 Score=44.87 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-ccHHHHH-----HHHHhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-PFAIQAE-----KTILTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~-----~~~~vN~~g~~~l 258 (484)
.|.+++|+|+ +++|.++++.+... |.+|+++++++++.+.. +++....... ....... ...-++..+.-..
T Consensus 162 ~~~~vlI~g~-g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 238 (330)
T cd08245 162 PGERVAVLGI-GGLGHLAVQYARAM-GFETVAITRSPDKRELA-RKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAA 238 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH-HHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHH
Confidence 5678999965 66999877766665 88999999988776554 3322110000 0000000 0011122122234
Q ss_pred HHHHHHhhhcCCEEEEEeCC
Q psy8786 259 CVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS~ 278 (484)
.+..+..++.+|+++.++..
T Consensus 239 ~~~~~~~l~~~G~~i~~~~~ 258 (330)
T cd08245 239 AEAALGGLRRGGRIVLVGLP 258 (330)
T ss_pred HHHHHHhcccCCEEEEECCC
Confidence 56667777888999988643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.5 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC------eEEEEecCch
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDKK 222 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga------~Vvl~~R~~~ 222 (484)
+.|+|++|.+|..++..|+..+-+ .+++.|++++
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 2 VVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred EEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 789999999999999999975322 4889998543
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.4 Score=46.57 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+|++|+++|.|++ -+|.-+|++|+++|-.+|+++.|+.+++++.++++.
T Consensus 175 ~L~~~~vlvIGAG-em~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~ 223 (414)
T COG0373 175 SLKDKKVLVIGAG-EMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG 223 (414)
T ss_pred ccccCeEEEEccc-HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC
Confidence 4899999999974 499999999999944689999999999999888876
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=86.64 E-value=0.99 Score=42.89 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
.|+.++|+|.|+ ||+|..+|..|++.|-.+|+++|.+
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467788999987 6899999999999843479999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=4.9 Score=42.96 Aligned_cols=46 Identities=17% Similarity=0.061 Sum_probs=36.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhc-------CC-CeEEEEecCchhHHHHHHHHHh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQ-------FD-GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~-------gg-a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.|.|+|++|-+|.++|..|+.. +- .++++++++++.++..+-++..
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~d 155 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELED 155 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHH
Confidence 5899999999999999999874 22 2688999999887765555544
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=2.5 Score=43.00 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
..++||++.|-|- |.||+++|+.|... |.+|+..+|..+
T Consensus 132 ~~l~g~tvgIvG~-G~IG~~vA~~l~af-G~~V~~~~~~~~ 170 (312)
T PRK15469 132 YHREDFTIGILGA-GVLGSKVAQSLQTW-GFPLRCWSRSRK 170 (312)
T ss_pred CCcCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 4578999999985 56999999999987 889999887654
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.8 Score=43.57 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.|+|.|.|.=+|+-++..|.++ ++.|.++.+...++++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~-~aTVtichs~T~~l~~ 194 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLRE-DATVTLAHSKTQDLPA 194 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEeCCCCCCHHH
Confidence 46789999999999999999999999998 8999988776665544
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=86.04 E-value=6.5 Score=50.80 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=29.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT 217 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~ 217 (484)
.+.|+.++|++.++|++.+++.+|.++ |+.|+++
T Consensus 1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~-G~~v~~~ 1785 (2582)
T TIGR02813 1752 KQSGANALVIDDDGHNAGVLAEKLIAA-GWQVAVV 1785 (2582)
T ss_pred cccCceeEEEcCCcchHHHHHHHHHhC-CCeEEEe
Confidence 456888999998999999999999999 8877665
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.7 Score=43.54 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.|+|.|-|.=+|+-++..|.++ ++.|+++.....++++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~-~atVt~chs~T~~l~~~ 199 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEM-NATVTLCHSKTQNLPSI 199 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCCCCHHHH
Confidence 46789999999999999999999999998 89999998766655443
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.2 Score=48.04 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCC----------------chHHHHHHHHHHhcCCCeEEEEec
Q psy8786 182 VDPSERVAVVTGAN----------------KGLGFGIVKSLCEQFDGYIYLTAR 219 (484)
Q Consensus 182 ~~L~gKvaLITGas----------------sGIG~aiA~~La~~gga~Vvl~~R 219 (484)
.+|+||.||||+|. |-+|.++|++++.+ |++|+++.-
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~G 304 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISG 304 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeC
Confidence 36899999999974 67999999999999 899988764
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.6 Score=38.77 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+++.+++.|.+ -|.++|..|++. |..|+++|.+++..+.+.+
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKES-GFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHC-CCEEEEEECCHHHHHHHHH
Confidence 56789999987 677889999988 8999999999987665544
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.60 E-value=2.4 Score=43.61 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCc-cHHHHHHH-----HHhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP-FAIQAEKT-----ILTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~-~~~~~~~~-----~~vN~~g~~~l 258 (484)
.|++++|.| ++++|..++...... |++|++++++.++.+.+.+++........ ..+..... .-++..|.-..
T Consensus 180 ~g~~vlV~G-~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~ 257 (357)
T PLN02514 180 SGLRGGILG-LGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP 257 (357)
T ss_pred CCCeEEEEc-ccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH
Confidence 678899996 599999877655555 78888888877665555443322100000 11111110 11122222234
Q ss_pred HHHHHHhhhcCCEEEEEeCCC
Q psy8786 259 CVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS~a 279 (484)
.+..+..++++|+++.++...
T Consensus 258 ~~~~~~~l~~~G~iv~~G~~~ 278 (357)
T PLN02514 258 LEPYLSLLKLDGKLILMGVIN 278 (357)
T ss_pred HHHHHHHhccCCEEEEECCCC
Confidence 455667778889999987653
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=1.9 Score=43.05 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=39.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.|+|.|.|.=+|+-++..|.++ ++.|.++.+...++.+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~-~AtVt~chs~T~~l~~~ 198 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNE-NATVTICHSKTKNLKEV 198 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHC-CCEEEEeCCCCCCHHHH
Confidence 45789999999999999999999999988 89999998766655443
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=85.41 E-value=1.9 Score=42.44 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|++++|+|+++++|.+++..+... |..|+.++++.++.+.+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 180 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALA 180 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHH
Confidence 5789999999999999998887777 88899988887665543
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.33 E-value=2 Score=43.45 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+|.|.| .|-||.++|..|+++ |.+|++.+|+++..+...+
T Consensus 4 ~V~VIG-~G~mG~~iA~~la~~-G~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 4 SVAIIG-AGLIGRAWAIVFARA-GHEVRLWDADPAAAAAAPA 43 (308)
T ss_pred EEEEEC-ccHHHHHHHHHHHHC-CCeeEEEeCCHHHHHHHHH
Confidence 588888 567999999999998 8899999999876665443
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.1 Score=42.74 Aligned_cols=42 Identities=24% Similarity=0.143 Sum_probs=35.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
|+|.|-|+ |-+|..+|..|++. |..|++.+++++.+++..+.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQE 43 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHH
Confidence 45788887 67999999999998 88999999999887776543
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=1.8 Score=43.41 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
..+++||.++|.|.|+=+|+-+|..|.++ |+.|+++....+..+
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-gatVtv~~s~t~~l~ 196 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDK-NATVTLTHSRTRNLA 196 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHC-CCEEEEECCCCCCHH
Confidence 46789999999999999999999999998 899998854444333
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.01 E-value=2.1 Score=42.94 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.|+|.|.|.=+|+-++..|.++ ++.|.++.+..+++.+
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~-~ATVt~chs~T~dl~~ 197 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRFTTDLKS 197 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEEcCCCCCHHH
Confidence 35789999999999999999999999988 8999998776655544
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=84.94 E-value=0.99 Score=44.06 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
..|++||||-++-=|.-+|+-|+.+ |..|..+-|....
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~K-gYeVHGiiRRsSs 64 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSK-GYEVHGIIRRSSS 64 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhC-CceeeEEEeeccc
Confidence 3479999999999999999999998 9999877765443
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=84.74 E-value=2.2 Score=42.49 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+.+++|+|+++++|.+++..+... |.+|+.+++++++.+.+
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~-g~~v~~~~~~~~~~~~~ 183 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAA-GATVVGAAGGPAKTALV 183 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence 4788999999999999987766666 88999999887765544
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=2.2 Score=42.86 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.|+|.|.|.=+|+-++..|.++ ++.|.++.....++++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~-~atVtichs~T~~l~~ 196 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNE-NATVTIAHSRTKDLPQ 196 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCCCCHHH
Confidence 46789999999999999999999999998 8999988776655444
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.2 Score=43.29 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
..|.||++.|-|- |.||+++|+.+... |.+|+..+|+.
T Consensus 118 ~~L~gktvgIiG~-G~IG~~vA~~l~af-G~~V~~~~r~~ 155 (303)
T PRK06436 118 KLLYNKSLGILGY-GGIGRRVALLAKAF-GMNIYAYTRSY 155 (303)
T ss_pred CCCCCCEEEEECc-CHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 3589999999986 67999999987766 88999999864
|
|
| >PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.52 E-value=1.5 Score=39.88 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
|+.||+.+-+|++||..|+++ |-+|++. +.+.-+....++
T Consensus 1 V~L~G~~sKvaraiA~~LC~r-gv~V~m~--~~~~y~~lk~~~ 40 (164)
T PF12076_consen 1 VFLTGNTSKVARAIALALCRR-GVQVVML--SKERYESLKSEA 40 (164)
T ss_pred CeecccccHHHHHHHHHHHhc-CCEEEEe--cHHHHHHHHHHc
Confidence 578999999999999999999 8888887 545555554444
|
This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases []. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.43 E-value=4.2 Score=42.01 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccH-HHHHHH----------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFA-IQAEKT----------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~-~~~~~~----------~~vN~~ 253 (484)
.+.+|+|+|++ -||...+..+...|..+|+++++++++++.+.+............ +..... .-+...
T Consensus 168 ~~~~V~V~GaG-pIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 168 PGGTVVVVGAG-PIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 34489999865 588887666556644578888999999887666443331111111 111111 112234
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|.....+.++...+++|+|++++-...
T Consensus 247 G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 247 GSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 445556677778888999999876554
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.3 Score=44.11 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.|++++|+|.|+ ||+|.++++.|+..|-.+++++|.+.
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 468889999987 79999999999998656898888753
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=84.32 E-value=6.2 Score=41.45 Aligned_cols=46 Identities=22% Similarity=0.088 Sum_probs=33.2
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCe----EEE----EecCchhHHHHHHHHHh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGY----IYL----TARDKKKGAEAVQVLKD 233 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~----Vvl----~~R~~~~~~~~~~~l~~ 233 (484)
.|.|+|++|.+|.++|..++..+-+. |.+ .+++++.++..+-++..
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d 99 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELED 99 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHH
Confidence 59999999999999999999864333 344 47787776655444443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=2.4 Score=42.49 Aligned_cols=45 Identities=11% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.++|.|.|.=+|+-++..|.++ ++.|.++.....++++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~-~atVtichs~T~~l~~ 195 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNH-DATVTIAHSKTRNLKQ 195 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHC-CCEEEEECCCCCCHHH
Confidence 46789999999999999999999999998 8999988766555443
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.28 E-value=6.8 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=28.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC------eEEEEecCc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDK 221 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga------~Vvl~~R~~ 221 (484)
.+.|+|++|.+|.++|..|+..+-+ .+++.|.++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC
Confidence 4889999999999999999886322 589999864
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.4 Score=44.48 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.++.||++.|-|- |.||+++|+.+.+.-|.+|+..++..+
T Consensus 161 ~~L~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~~d~~~~ 200 (386)
T PLN02306 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQS 200 (386)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 4689999999985 569999999986333889999988753
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.25 E-value=2.8 Score=41.94 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=34.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
+.|.|.|+ |-+|.++|..|++. |..|++.+++++.++...+.
T Consensus 5 ~kI~vIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~ 46 (292)
T PRK07530 5 KKVGVIGA-GQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLAT 46 (292)
T ss_pred CEEEEECC-cHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHH
Confidence 45667765 67999999999998 88999999998877765543
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=2.4 Score=42.80 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.|+|.|-|.=+|+-++..|.++ ++.|.++......+++.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~-~atVtv~hs~T~~l~~~ 198 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAA-NATVTIAHSRTQDLASI 198 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHC-CCEEEEeCCCCCCHHHH
Confidence 35789999999999999999999999998 89999887766555443
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.07 E-value=7.6 Score=41.59 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=32.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC--------eEEEEec--CchhHHHHHHHHHh
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG--------YIYLTAR--DKKKGAEAVQVLKD 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga--------~Vvl~~R--~~~~~~~~~~~l~~ 233 (484)
-+|+||||++-||.++.-.+|+ |. .++++|. +++.++..+-++..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~--G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D 178 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLAS--GEVFGMEEEISIHLLDSPENLEKLKGLVMEVED 178 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhC--CcccCCCCeEEEEEEcCCCchhhHHHHHHHHHH
Confidence 4599999999999999999997 32 3567777 56666555544443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=2.3 Score=42.69 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.|+|.|-|.=+|+-++..|.++ ++.|.++.....++++
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~-~ATVtichs~T~~L~~ 198 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKE-NCSVTICHSKTHNLSS 198 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCCCCHHH
Confidence 46789999999999999999999999988 8999988766555444
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.02 E-value=2.5 Score=42.31 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.|+|.|-+.-.|+.+|..|..+ ++.|.++.++...+++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-~atVtv~hs~t~~L~~~ 192 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNA-DATVTICHSKTENLKAE 192 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhC-CCeeEEEecChhHHHHH
Confidence 46789999999999999999999999988 89999998877655443
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=84.01 E-value=2.5 Score=42.18 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
+.+++|.|+++++|.+++...... |++|+++++++++.+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 187 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKL-GYTVVALTGKEEQADYL 187 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Confidence 468999999999999988755555 88899999988765544
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.96 E-value=7.9 Score=35.36 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+++++|..|++.|. ++..++++ +.+|+.++++++..+.+.+.+.
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKN-GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhh-cceEEEEECCHHHHHHHHHHHH
Confidence 67889999988776 66667777 7899999999887766655443
|
|
| >KOG1197|consensus | Back alignment and domain information |
|---|
Probab=83.96 E-value=15 Score=36.36 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
.|-+|||--|++|.|..+|..+-.. |++++.+..+.++.+.+++
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~-~a~tI~~asTaeK~~~ake 189 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAV-GAHTIATASTAEKHEIAKE 189 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhc-CcEEEEEeccHHHHHHHHh
Confidence 5889999999999999999877776 8888888887777655443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.95 E-value=4.9 Score=40.92 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=34.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.|.|+|+ |+||.++|..|+.++-+ .+++.|++++.++-.+.++.
T Consensus 2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~ 46 (313)
T COG0039 2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLS 46 (313)
T ss_pred eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchh
Confidence 4889999 99999999999887545 79999999766554444443
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=83.84 E-value=2.2 Score=40.64 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.+++||.++|.||+ .+|..-++.|++. |++|++++.+..
T Consensus 5 l~l~gk~vlVvGgG-~va~rk~~~Ll~~-ga~VtVvsp~~~ 43 (205)
T TIGR01470 5 ANLEGRAVLVVGGG-DVALRKARLLLKA-GAQLRVIAEELE 43 (205)
T ss_pred EEcCCCeEEEECcC-HHHHHHHHHHHHC-CCEEEEEcCCCC
Confidence 56899999999975 5899999999998 899999887644
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.81 E-value=2.4 Score=41.99 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAE 226 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~ 226 (484)
.|++++|.|+ ++||..++..+... |++ |+++++++++.+.
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~ 160 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAA-GAARVVAADPSPDRREL 160 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHH
Confidence 6889999986 79999887765555 765 8888887776543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.80 E-value=2.5 Score=41.77 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|.+++|.|+++++|.+++...... |++|+.+.+++++.+.+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 183 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALL 183 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Confidence 5789999999999999987766666 88999888887665444
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=83.78 E-value=5.2 Score=40.31 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|++++|.|+ +++|.+++......|+.+|+++.+++++.+.+
T Consensus 167 ~~~~vlI~g~-~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~ 208 (340)
T cd05284 167 PGSTVVVIGV-GGLGHIAVQILRALTPATVIAVDRSEEALKLA 208 (340)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 5789999995 56999988877776327898888887765543
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=83.73 E-value=2.5 Score=41.41 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
+|++++|.|+++++|.++++..... |.+|+++++++++.+.+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKAL-GATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHH
Confidence 5789999999999999988766666 88998888887765544
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=83.61 E-value=4.8 Score=43.76 Aligned_cols=94 Identities=9% Similarity=0.012 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----C-----------CCccHHHHHHH-
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----S-----------TVPFAIQAEKT- 247 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~-----------~~~~~~~~~~~- 247 (484)
..+.+++|.|+ |.+|...+..+... |+.|++++++.++.+.+.+ +.... . ...+.+..+..
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 45678999996 78999999988887 8899999999887654432 32210 0 00011111100
Q ss_pred --HH---------hhhH------HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 248 --IL---------TNYL------GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 248 --~~---------vN~~------g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
+. +|.. .+..+++..+..|++++.||.+++..|
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~G 288 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQG 288 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCC
Confidence 00 1211 334577788888888899999988665
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=83.59 E-value=11 Score=38.44 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=34.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
..+.|+|+ |.+|..+|..++..+-+ .++++|.+++.++..+.++..
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~ 50 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQH 50 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHH
Confidence 35889996 99999999999887333 599999988766655555543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=83.57 E-value=2.5 Score=43.96 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|.+++|+|++++||.+++...... |.+|+++++++++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAA-GANPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHH
Confidence 5789999999999999987655555 88888888887766544
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.45 E-value=4.8 Score=40.80 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
++++++|+| .+++|.+++..+... |.+|+++.++.++.+.+
T Consensus 165 ~~~~vlV~g-~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~ 205 (345)
T cd08260 165 PGEWVAVHG-CGGVGLSAVMIASAL-GARVIAVDIDDDKLELA 205 (345)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHH
Confidence 578999999 689999987766666 88999998887765544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=2.6 Score=42.09 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|.+++|+|+++++|.+++..+... |..|+++.+++++.+.+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~ 181 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKY-GAATIITTSSEEKVDFC 181 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH
Confidence 5788999999999999998877776 88888888887765554
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.34 E-value=2.7 Score=42.11 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.++|.|-|.=+|+-++..|.++ ++.|.++.+...++++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~-~atVt~chs~T~nl~~ 196 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKTKDLSL 196 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCCCCHHH
Confidence 45789999999999999999999999988 8999988877665544
|
|
| >KOG1196|consensus | Back alignment and domain information |
|---|
Probab=83.33 E-value=4.1 Score=41.05 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCC---CCc-c-HHHHHHHHH-------hhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAS---TVP-F-AIQAEKTIL-------TNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~---~~~-~-~~~~~~~~~-------vN~ 252 (484)
+|+|++|.||++..| .+|-+||+.-|+.|+..+-+.++..-+..++.-... .++ . .+...+.+- -|+
T Consensus 153 ~geTv~VSaAsGAvG-ql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNV 231 (343)
T KOG1196|consen 153 KGETVFVSAASGAVG-QLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENV 231 (343)
T ss_pred CCCEEEEeeccchhH-HHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEecc
Confidence 689999999999999 577788887788999888777776555444322200 000 1 111111111 234
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
=| .+..+++..|+.+|||+..+-++.+
T Consensus 232 GG--~~lDavl~nM~~~gri~~CG~ISqY 258 (343)
T KOG1196|consen 232 GG--KMLDAVLLNMNLHGRIAVCGMISQY 258 (343)
T ss_pred Cc--HHHHHHHHhhhhccceEeeeeehhc
Confidence 34 2456777788889999987766554
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=2.7 Score=42.38 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=39.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.++|.|.|.=+|+-++..|.++ ++.|.++.....++++.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~-~aTVt~chs~T~~l~~~ 200 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGE-NCTVTTVHSATRDLADY 200 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhC-CCEEEEeCCCCCCHHHH
Confidence 46789999999999999999999999998 89999988776655443
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.18 E-value=1.7 Score=42.26 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+++++|+|.|+ ||+|.++++.|++.|-.+++++|.+.-+....
T Consensus 24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL 67 (231)
T PRK08328 24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNL 67 (231)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhh
Confidence 467888999986 58999999999999666899998876554433
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.99 E-value=3.1 Score=41.65 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=34.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
|+|.|.|+ |-+|.++|..|++. |..|++++++++.+++..+.
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~ 45 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFART-GYDVTIVDVSEEILKNAMEL 45 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH
Confidence 45777776 56999999999998 88999999999887765443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.98 E-value=3.6 Score=40.09 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=38.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
+++.|+++|=.|+++| -+++.+|+. |+.|+.+|-+++..+.+...
T Consensus 56 ~~l~g~~vLDvGCGgG---~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~h 100 (243)
T COG2227 56 FDLPGLRVLDVGCGGG---ILSEPLARL-GASVTGIDASEKPIEVAKLH 100 (243)
T ss_pred cCCCCCeEEEecCCcc---HhhHHHHHC-CCeeEEecCChHHHHHHHHh
Confidence 3479999999999999 589999999 89999999998877765543
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=5.7 Score=40.74 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC------eEEEEecCc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG------YIYLTARDK 221 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga------~Vvl~~R~~ 221 (484)
+.+.|+|++|.+|..+|..|+..+-+ .+++.|+++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 46899999999999999998875222 588999854
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=82.87 E-value=2.8 Score=42.34 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=39.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||.|+|.|-|.=+|+-++..|.++ ++.|+++......+++.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~-~ATVtvchs~T~nl~~~ 207 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKA-DATVTVVHSRTPDPESI 207 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHC-CCEEEEeCCCCCCHHHH
Confidence 46889999999999999999999999998 89999997766555443
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=3 Score=41.83 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.++|.|-|.=+|+-++..|.++ ++.|.++......+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~-~AtVtichs~T~nl~~ 196 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLER-HATVTIAHSRTADLAG 196 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHC-CCEEEEeCCCCCCHHH
Confidence 46789999999999999999999999988 8999998776655544
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.74 E-value=2.9 Score=40.03 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=31.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLK 232 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~ 232 (484)
.+..||+|-||.++|++|++. |+.|++..|+.+ +.+.+.+.+.
T Consensus 3 ~~~i~GtGniG~alA~~~a~a-g~eV~igs~r~~~~~~a~a~~l~ 46 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKA-GHEVIIGSSRGPKALAAAAAALG 46 (211)
T ss_pred EEEEeccChHHHHHHHHHHhC-CCeEEEecCCChhHHHHHHHhhc
Confidence 345567788999999999998 888988866654 4444444443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.70 E-value=3.3 Score=41.40 Aligned_cols=42 Identities=17% Similarity=0.034 Sum_probs=33.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
++|.|.|+ |-+|.++|..|++. |..|++.+++++.+++..+.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH
Confidence 34666665 67999999999988 88999999998877665544
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.9 Score=42.80 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHH-hcCCCeEEEEecCc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLC-EQFDGYIYLTARDK 221 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La-~~gga~Vvl~~R~~ 221 (484)
.+|.||++.|.|- |.||+++|+.+. .- |.+|+..+|..
T Consensus 141 ~~L~gktvGIiG~-G~IG~~va~~l~~~f-gm~V~~~~~~~ 179 (323)
T PRK15409 141 TDVHHKTLGIVGM-GRIGMALAQRAHFGF-NMPILYNARRH 179 (323)
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHhcC-CCEEEEECCCC
Confidence 4689999999996 679999999986 55 78898888764
|
|
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=82.63 E-value=2.8 Score=43.77 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|.+++|+|+++++|.+++..+... |++|++++++.++.+.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~-G~~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAG-GGNPVAVVSSPEKAEYC 230 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHH
Confidence 5789999999999999988666555 88888887776655433
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.8 Score=39.66 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=34.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR 219 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R 219 (484)
.+++||.|+|.|-|.=+|+-+|..|.++ ++.|++++.
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~-~AtVti~~~ 94 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLAND-GARVYSVDI 94 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHC-CCEEEEEec
Confidence 4789999999999999999999999998 899999863
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=11 Score=38.37 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
+.+.+.|.|| |.+|..++..++..+-+.|++.|++++.++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQ 43 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccch
Confidence 4567999997 789999999999873268999999876544
|
|
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=82.14 E-value=2.7 Score=43.45 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
+|+.+||.||++|.|.+.++-.... +..++++.++.++.+ .++++..
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~-~~~~v~t~~s~e~~~-l~k~lGA 203 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHA-GAIKVVTACSKEKLE-LVKKLGA 203 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhc-CCcEEEEEcccchHH-HHHHcCC
Confidence 6889999999999999887765555 545555555555433 4444543
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.14 E-value=3 Score=43.12 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~ 227 (484)
.|++++|+|+ ++||...+...... |+ +|+++++++++.+.+
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a 226 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMA-KASRIIAIDINPAKFELA 226 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH
Confidence 5789999985 89999887755555 76 799999988876654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=82.10 E-value=2.1 Score=41.11 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.|+.++|+|.|+ ||+|..+|+.|++.|-.+++++|.+.
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467888999985 79999999999999555799999874
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=81.97 E-value=3.8 Score=39.77 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEE-EEec
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIY-LTAR 219 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vv-l~~R 219 (484)
.++++++++|-| .|.+|+.+|+.|.+. |++|+ +.+.
T Consensus 27 ~~l~~~~v~I~G-~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQG-FGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 457899999998 689999999999998 88887 6665
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=81.64 E-value=3 Score=43.33 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~ 227 (484)
.|++++|.|+ ++||..++...... |+ +|+++++++++.+.+
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a 239 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARAR-GASKIIGVDINPEKFEKG 239 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHH
Confidence 5889999986 89999987765555 77 699999988876654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 484 | ||||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 1e-26 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 1e-08 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 1e-23 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 3e-07 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 4e-23 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 2e-06 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 3e-22 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 7e-06 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 9e-05 | ||
| 1yo6_A | 250 | Crystal Structure Of The Putative Carbonyl Reductas | 2e-04 |
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
| >pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans Length = 250 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 4e-55
Identities = 74/237 (31%), Positives = 104/237 (43%), Gaps = 49/237 (20%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------ 232
VA+VTG NKG+G IV+ LC F G + LTARD +G AVQ L+
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD 62
Query: 233 --DRAS------------------------------TVPFAIQAEKTILTNYLGLVRTCV 260
D S PF IQAE T+ TN+ G C
Sbjct: 63 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCT 122
Query: 261 FLFPLLRRHARVVNLSSSAGHLSQITNLELKK---RLRQLREPVSLRSLNITKEHPRA-- 315
L PL++ RVVN+SS + + + R + E + +N E +
Sbjct: 123 ELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGV 182
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
H +GWP SAY V+KIGV +L+RI+ +K + ++NA PG+V T+M+
Sbjct: 183 HQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA 239
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 5e-13
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 408 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN-LELKKRLM 466
PF IQAE T+ TN+ G C L PL++ RVVN+SS + + EL+++
Sbjct: 99 PTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 158
Query: 467 EDCVSERQLTDMMYEFME 484
+ ++E +L +M +F+E
Sbjct: 159 SETITEEELVGLMNKFVE 176
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-26
Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 15/183 (8%)
Query: 199 GFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTILTNYLGLVRT 258
G ++F I D ++ + + + + AE+ + NY G+
Sbjct: 100 GVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSV 159
Query: 259 CVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA- 315
L PLL+ R+VN+SSS G L ++N + L R + +
Sbjct: 160 TEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDF 219
Query: 316 ----HVAKGWPD--SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
GWP +AY SK +N TR+ K +N V PG V T M+
Sbjct: 220 KENLIETNGWPSFGAAYTTSKACLNAYTRVLANKIP------KFQVNCVCPGLVKTEMNY 273
Query: 370 FMG 372
+G
Sbjct: 274 GIG 276
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 5e-14
Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 10/235 (4%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPF 240
+ R AVVTG NKG+GF I K L + LT RD KG EAV+ LK+
Sbjct: 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSN-GIMVVLTCRDVTKGHEAVEKLKNSNHENVV 65
Query: 241 AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREP 300
Q + +T+ + + + ++ L ++AG + + K +
Sbjct: 66 FHQLD---VTDPIATMSSLADFI--KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 301 VSLRSLNITKEHPRAHVAKGWPDSA---YAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 357
S + I ++ + + A ++ GV +T + + V +
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL-QLSDSPRIVNVS 179
Query: 358 VHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPFA 412
G + + + D+ T + V++ L + N + A
Sbjct: 180 SSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGA 234
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 4e-09
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 362 YVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPFAIQAEKTILT 421
+ N + G D + S L+ + + + AE+ +
Sbjct: 93 DILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYE-LAEECLKI 151
Query: 422 NYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLM-EDCVSERQLTDM 478
NY G+ L PLL+ R+VN+SSS G L ++N + L D ++E ++ +
Sbjct: 152 NYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMV 211
Query: 479 MYEFME 484
+ ++
Sbjct: 212 VNMLLK 217
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-19
Identities = 47/246 (19%), Positives = 78/246 (31%), Gaps = 91/246 (36%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKGAEAVQVLKDRASTVPF--- 240
S VVTGAN+G+G G+V+ L + +I TARD +K E + R +P
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 241 ---AIQA--------------------------------------EKTILTNYLGLVRTC 259
++ + + N +V
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 260 VFLFPLLRR-------------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306
L PLL+ A V+ +SS G S+ +
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLG---------------------SI-TD 159
Query: 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366
N + +P AY +SK +N+ R +L + + ++ PG+V TN
Sbjct: 160 NTSGSAQ-------FPVLAYRMSKAAINMFGRTLAV----DLKDDNVLVVNFCPGWVQTN 208
Query: 367 MSSFMG 372
+
Sbjct: 209 LGGKNA 214
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-14
Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 40/206 (19%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ V++G G+G K L G+ I + + + R + +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKC 59
Query: 245 --------------------EKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL 282
+ NY G P L++ V +SS A
Sbjct: 60 SKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAH 119
Query: 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQK 342
L L E + + H + + AYA SK + + R
Sbjct: 120 LAFDKNPLALALEAGEEAKARAIV--------EHAGEQGGNLAYAGSKNALTVAVR---- 167
Query: 343 KFDCELGNQDKV-INAVHPGYVATNM 367
K G + V +N + PG T +
Sbjct: 168 KRAAAWG-EAGVRLNTIAPGATETPL 192
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 98/250 (39%)
Query: 184 PSERVAVVTGANKGLGFGIVKSLCEQ-FDGY-IYLTARDKKKGAEAVQVLKDRAS----- 236
++TG N+GLG G+VK+L ++ T R++++ E + K+ ++
Sbjct: 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILE 78
Query: 237 ---TVPFAIQA--------------------------------------EKTILTNYLGL 255
A T+ TN +
Sbjct: 79 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 138
Query: 256 VRTCVFLFPLLRR-------------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302
+ PLL++ A ++N+SS G +
Sbjct: 139 IMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ------------------- 179
Query: 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362
+ G AY SK +N T+ +L Q + ++HPG+
Sbjct: 180 ------------GNTDGGMY--AYRTSKSALNAATKSLSV----DLYPQRIMCVSLHPGW 221
Query: 363 VATNMSSFMG 372
V T+M
Sbjct: 222 VKTDMGGSSA 231
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 40/229 (17%), Positives = 60/229 (26%), Gaps = 86/229 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+ A+V G G+G V+ L E G + LT R++ A + R +
Sbjct: 9 KKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEFGPRVHALRSDIADL 66
Query: 241 --------AIQAE----------------------------KTILTNYLGLVRTCVFLFP 264
A + N G T L P
Sbjct: 67 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTP 126
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD- 323
L+R +V SS A G P
Sbjct: 127 LIREGGSIVFTSSVADE-------------------------------------GGHPGM 149
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
S Y+ SK + + EL + +N+V PG++ T G
Sbjct: 150 SVYSASKAALVSFASVLAA----ELLPRGIRVNSVSPGFIDTPTKGVAG 194
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 35/204 (17%), Positives = 58/204 (28%), Gaps = 40/204 (19%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE- 245
V +TG+ G+G + + L G+ + R + + R + V +
Sbjct: 3 VIAITGSASGIGAALKELLARA--GHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCG 60
Query: 246 --------------------KTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS 283
+ NY G+ L L R V + S A
Sbjct: 61 GVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQP 120
Query: 284 QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK 343
L + ++ +G AYA SK V L R +
Sbjct: 121 G------AAELPMVEAMLAGDEARAI----ELAEQQGQTHLAYAGSKYAVTCLAR----R 166
Query: 344 FDCELGNQDKVINAVHPGYVATNM 367
+ + +N V PG V T +
Sbjct: 167 NVVDWAGRGVRLNVVAPGAVETPL 190
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 45/248 (18%), Positives = 68/248 (27%), Gaps = 88/248 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------- 238
++AV+TGA G+G K + G +++T R K A+ + A +
Sbjct: 30 KIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEIGGGAVGIQADSANL 87
Query: 239 ------------------------------PFAIQAE----KTILTNYLGLVRTCVFLFP 264
P E T N G++ T P
Sbjct: 88 AELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALP 147
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD- 323
LL R + VV S+AG G P
Sbjct: 148 LLARGSSVVLTGSTAGS-------------------------------------TGTPAF 170
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIFDDSST 382
S YA SK + R + +L + IN + PG T + +
Sbjct: 171 SVYAASKAALRSFARNWIL----DLK-DRGIRINTLSPGPTETTGLVELAGKDPVQQQGL 225
Query: 383 FNAFERVI 390
NA +
Sbjct: 226 LNALAAQV 233
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 58/236 (24%), Positives = 79/236 (33%), Gaps = 83/236 (35%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP--- 239
++R V+TGAN GLG + L + + + RD +KG A + + +
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARR-GATVIMAVRDTRKGEAAARTMAGQVEVRELDL 71
Query: 240 --------FA--------------IQA----------EKTILTNYLG---LVRTCVFLFP 264
FA I A E I TN+LG L L P
Sbjct: 72 QDLSSVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNL---LLP 128
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW-PD 323
L RVV +SS A +I +L LN + + P
Sbjct: 129 RLT--DRVVTVSSMAHWPGRI----------------NLEDLNWRS--------RRYSPW 162
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCEL-----GNQDKVI-NAVHPGYVATNMSSFMGN 373
AY+ SK+ NLL F EL + A HPGY TN+ G
Sbjct: 163 LAYSQSKLA-NLL-------FTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGR 210
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 42/254 (16%), Positives = 75/254 (29%), Gaps = 97/254 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
A+VTG ++G+G+GIV+ L G +Y +R++K+ + + + +
Sbjct: 10 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDL 67
Query: 241 ----AIQA--EKT---------ILTNYLGLVR--------------------TCVFLF-- 263
Q IL N G+V +
Sbjct: 68 SSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSV 127
Query: 264 ---PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P L VV +SS +G L+
Sbjct: 128 LAHPFLKASERGNVVFISSVSGALAVPYE------------------------------- 156
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIF 377
+ Y +K ++ LT + E +D + +N V PG +AT++
Sbjct: 157 -----AVYGATKGAMDQLT----RCLAFEWA-KDNIRVNGVGPGVIATSLVE-----MTI 201
Query: 378 DDSSTFNAFERVIS 391
D ++I
Sbjct: 202 QDPEQKENLNKLID 215
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 92/231 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
A+VTG +KG+G+ IV+ L G +Y +R++K+ E +++ ++
Sbjct: 22 TTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL 79
Query: 241 ----AIQA--EKT---------ILTNYLGLVR--------------------TCVFLF-- 263
+ IL N G+V +
Sbjct: 80 LSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQ 139
Query: 264 ---PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
PLL ++ V+ LSS AG + +
Sbjct: 140 IAYPLLKASQNGNVIFLSSIAGFSALPSV------------------------------- 168
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS 368
S Y+ SK +N +T K CE +D + +N+V PG + T +
Sbjct: 169 -----SLYSASKGAINQMT----KSLACEWA-KDNIRVNSVAPGVILTPLV 209
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 87/227 (38%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF--- 240
S +VTGA GLG + L E+ G+ + + R ++ + +L + +
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVER--GHQVSMMGRRYQRLQQQELLLGNAVIGIVADLA 59
Query: 241 ---AIQA-----------------------------------EKTILTNYLGLVRTCVFL 262
+ + + +N + +
Sbjct: 60 HHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQT 119
Query: 263 FPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
L+ R + N+ SSA G
Sbjct: 120 VRLIGERGGVLANVLSSAAQ-------------------------------------VGK 142
Query: 322 PD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ S Y SK G+ + EL + + ++P + +
Sbjct: 143 ANESLYCASKWGMRGFLESLRA----ELKDSPLRLVNLYPSGIRSEF 185
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 45/233 (19%), Positives = 61/233 (26%), Gaps = 94/233 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP--FAIQ 243
RV +VTGA +G+G ++ G + L R + AE +K P A+
Sbjct: 15 RVILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72
Query: 244 AEKTILTNYLGLVRTC-----------------------------------------VFL 262
E Y L F+
Sbjct: 73 LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFM 132
Query: 263 -----FPLLR--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
PLL+ A + SSS G RA
Sbjct: 133 LTRALLPLLKRSEDASIAFTSSSVGR------------------------------KGRA 162
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
W AY VSK L + EL V N+++PG T M
Sbjct: 163 ----NW--GAYGVSKFATEGLMQTLAD----ELEGVTAVRANSINPGATRTGM 205
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 25/247 (10%), Positives = 55/247 (22%), Gaps = 79/247 (31%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-LKDRAST-------- 237
++ GA+ LG + + L + + R + V V + + S
Sbjct: 4 MKILLIGASGTLGSAVKERLEK--KAEVITAGRH----SGDVTVDITNIDSIKKMYEQVG 57
Query: 238 --------------VPFAI----QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279
P + TI + G + + L +
Sbjct: 58 KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIM 117
Query: 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTR 338
++ A++ V +
Sbjct: 118 ME-------------------------------------DPIVQGASAAMANGAVTAFAK 140
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFD---DSSTFNAFERVISHFLI 395
E+ ++ N V P + + F + AFE+ +
Sbjct: 141 SAAI----EMPRGIRI-NTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQT 195
Query: 396 GQQINTF 402
G+ +
Sbjct: 196 GESYQVY 202
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 47/235 (20%), Positives = 74/235 (31%), Gaps = 91/235 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD--RASTVPF--- 240
R+A+VTG ++G+G I + L E G +++ ARD + A+ L +P
Sbjct: 30 RIALVTGGSRGIGQMIAQGLLEA--GARVFICARDAEACADTATRLSAYGDCQAIPADLS 87
Query: 241 ---AIQA-----------------------------------EKTILTNYLGLVRTCVFL 262
+ EK + N + L
Sbjct: 88 SEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQL 147
Query: 263 FPLLRRHA------RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316
PLLRR A RV+N+ S AG
Sbjct: 148 LPLLRRSASAENPARVINIGSVAG-----------------------------------I 172
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
A G AY SK ++ L+R+ EL + +N + PG + M+ +
Sbjct: 173 SAMGEQAYAYGPSKAALHQLSRM----LAKELVGEHINVNVIAPGRFPSRMTRHI 223
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 6e-10
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 78/220 (35%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK-----DRASTVP 239
ER A+VTG ++G+G I ++L + GY + + +R+ ++ A+++ + ++
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVAR--GYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKG 59
Query: 240 FAIQAEKT-----ILTNYLGLVR--------------------TCVFLF------PLL-R 267
+A + +L + + FL +
Sbjct: 60 LVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA 119
Query: 268 RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYA 327
RV+ + S + + AY
Sbjct: 120 GWGRVLFIGSVTTFTA----------------------------GGPVPIP------AYT 145
Query: 328 VSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+K + LT + E +N + PGYV T
Sbjct: 146 TAKTALLGLT----RALAKEWARLGIRVNLLCPGYVETEF 181
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 90/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+ +VTG KG+G IV+ G I+ AR++ + E + + + +
Sbjct: 15 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDA 72
Query: 241 --AIQAEKT-------------ILTNYLGLVR--------------------TCVFLF-- 263
+ EK IL N LG +R +
Sbjct: 73 SLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQ 132
Query: 264 ---PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
PLL ++ +SS AG +S
Sbjct: 133 LAHPLLKASGCGNIIFMSSIAGVVSASVG------------------------------- 161
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
S Y+ +K +N L + CE + NAV P +AT ++
Sbjct: 162 -----SIYSATKGALNQLA----RNLACEWASDGIRANAVAPAVIATPLA 202
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 37/232 (15%), Positives = 59/232 (25%), Gaps = 94/232 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
R+ +VTGA+ G+G + G + L R+++K + + + P
Sbjct: 13 RIILVTGASDGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEETGRQPQWFILD 70
Query: 245 -----------------------------------------------EKTILTNYLGLVR 257
+ + N
Sbjct: 71 LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFM 130
Query: 258 TCVFLFPLLR--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
L PLL +V SSS G RA
Sbjct: 131 LTQALLPLLLKSDAGSLVFTSSSVGR------------------------------QGRA 160
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
W AYA SK + ++ E + +V N ++PG T M
Sbjct: 161 ----NW--GAYAASKFATEGMMQVLAD----EYQQRLRV-NCINPGGTRTAM 201
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 41/229 (17%), Positives = 66/229 (28%), Gaps = 94/229 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY---IYLTARDKKKGAEAVQVLKDRASTVP---- 239
+V +VTG ++G+G IV L +Y AR + + + DR V
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSL--DKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDIT 60
Query: 240 ----------FAIQA----------------------------EKTILTNYLGLVRTCVF 261
A++ +K N+ +V
Sbjct: 61 EDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGI 120
Query: 262 LFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
P L+ + VV +SS A ++
Sbjct: 121 ALPELKKTNGNVVFVSSDACNMYF----------------------------------SS 146
Query: 321 WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
W AY SK +N L N+++ + AV PG V T+M
Sbjct: 147 W--GAYGSSKAALNHFAMT--------LANEERQVKAIAVAPGIVDTDM 185
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 23/219 (10%), Positives = 44/219 (20%), Gaps = 82/219 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK--DRASTVPFAIQ 243
+ +V G + LG +VK + + + A+ +K + I+
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSK--SWNTISIDFRENPNADHSFTIKDSGEEE-IKSVIE 79
Query: 244 A--------------------------------EKTILTNYLGLVRTCVFLFPLLRRHAR 271
+ I N + LL +
Sbjct: 80 KINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGL 139
Query: 272 VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSK 330
V +SA AY +K
Sbjct: 140 FVLTGASAAL-------------------------------------NRTSGMIAYGATK 162
Query: 331 IGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
+ + + E G + P + T
Sbjct: 163 AATHHIIKD----LASENGGLPAGSTSLGILPVTLDTPT 197
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 4e-09
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 40/200 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
R +VTGA KG+G G V++L G + +R + V+ V +
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECP-GIEPVCVDLGDW 64
Query: 243 -QAEKT--------ILTNYLGLVRTCVFLFPLLRRHA----RV--VNLSSSAGHLSQITN 287
E+ +L N + P L R VNL + +SQI
Sbjct: 65 EATERALGSVGPVDLLVNNAAVALLQ----PFLEVTKEAFDRSFEVNL-RAVIQVSQIVA 119
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCE 347
L R +N++ + + A S Y +K +++LT++ E
Sbjct: 120 RGLIARGV------PGAIVNVSSQC--SQRA-VTNHSVYCSTKGALDMLTKV----MALE 166
Query: 348 LGNQDKVINAVHPGYVATNM 367
LG +NAV+P V T+M
Sbjct: 167 LGPHKIRVNAVNPTVVMTSM 186
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 5e-09
Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 97/257 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARD---------KKKGAEAVQV--- 230
+VA+VTGA++G+G I K L DG + Y ++ + G A +
Sbjct: 8 KVALVTGASRGIGRAIAKRLAN--DGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGAN 65
Query: 231 LKDRASTVPFAIQAEKT-----------IL-------------------------TNYLG 254
L+ + IL N
Sbjct: 66 LESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKA 125
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
LR ++R++N+SS+A +
Sbjct: 126 PFFIIQQALSRLRDNSRIINISSAATRI-------------------------------- 153
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN 373
PD AY+++K +N +T K +LG + +NA+ PG+V T+M++ + +
Sbjct: 154 -----SLPDFIAYSMTKGAINTMTFTLAK----QLGARGITVNAILPGFVKTDMNAELLS 204
Query: 374 VNIFDDS-STFNAFERV 389
+ +T +AF R+
Sbjct: 205 DPMMKQYATTISAFNRL 221
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 5e-09
Identities = 47/225 (20%), Positives = 67/225 (29%), Gaps = 84/225 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR-ASTVPF---- 240
A VTGA G+G I ++ G + L R+ A Q L A+ +
Sbjct: 12 ACAAVTGAGSGIGLEICRAFAAS--GARLILIDREAAALDRAAQELGAAVAARIVADVTD 69
Query: 241 ------AIQAEKT-----ILTNYLGLVR--------------------TCVFLFP----- 264
A + IL N G+ R +F
Sbjct: 70 AEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGR 129
Query: 265 --LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
+ R +VNL S +G + V +
Sbjct: 130 AMVARGAGAIVNLGSMSGTI----------------------------------VNRPQF 155
Query: 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
S+Y SK V+ LTR E + +NA+ PGYVAT M
Sbjct: 156 ASSYMASKGAVHQLTRA----LAAEWAGRGVRVNALAPGYVATEM 196
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 9e-09
Identities = 42/245 (17%), Positives = 66/245 (26%), Gaps = 89/245 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
A+VTGA KG+G VK+L G + R + V +
Sbjct: 8 LRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECP-GIEPVCVDLGDW 64
Query: 243 -QAEKT--------ILTNYLGLVR--------------------TCVFLF------PLLR 267
EK +L N LV VF ++
Sbjct: 65 DATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMIN 124
Query: 268 R--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325
R +VN+SS H++
Sbjct: 125 RGVPGSIVNVSSMVAHVTFPNL------------------------------------IT 148
Query: 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNA 385
Y+ +K + +LT+ ELG +N+V+P V T+M + D
Sbjct: 149 YSSTKGAMTMLTKA----MAMELGPHKIRVNSVNPTVVLTDM-----GKKVSADPEFARK 199
Query: 386 FERVI 390
+
Sbjct: 200 LKERH 204
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 78/216 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY--IYLTARDKKKGAEAVQVLK----DRAS---- 236
+VTG +KG+G +V+ L + + + AE ++ +K +
Sbjct: 5 ANYLVTGGSKGIGKAVVELLLQN--KNHTVINIDIQQSFSAENLKFIKADLTKQQDITNV 62
Query: 237 --TVPF----------AIQAEKTIL------------TNYLGLVRTCVFLFPLLRRHARV 272
+ I + +I N + L L+ A +
Sbjct: 63 LDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASI 122
Query: 273 VNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKI 331
V S P+ AY +SK
Sbjct: 123 VFNGSDQCF-------------------------------------IAKPNSFAYTLSKG 145
Query: 332 GVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ +T+ +L +N V PG V T++
Sbjct: 146 AIAQMTKSLAL----DLAKYQIRVNTVCPGTVDTDL 177
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 39/227 (17%), Positives = 60/227 (26%), Gaps = 91/227 (40%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--------GAEAVQV-LKDRA 235
+++AVVTGA G+G IVK L +Y R+ + G E ++ +
Sbjct: 4 KKKIAVVTGATGGMGIEIVKDLSRD--HIVYALGRNPEHLAALAEIEGVEPIESDIVKEV 61
Query: 236 STVPFAIQA------------------------------EKTILTNYLGLVRTCVFLFPL 265
+ + N + L P
Sbjct: 62 L-EEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPA 120
Query: 266 LR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
LR V+ ++S AG+ P +
Sbjct: 121 LRAASGCVIYINSGAGN-------------------------------------GPHPGN 143
Query: 325 A-YAVSKIGVNLLT---RIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK + L R E N ++ V PG T M
Sbjct: 144 TIYAASKHALRGLADAFRK-------EEANNGIRVSTVSPGPTNTPM 183
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 37/231 (16%), Positives = 62/231 (26%), Gaps = 94/231 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKDRASTVPFAI 242
+V V+ G K LG K+ + Y A+D + L+D+ + V
Sbjct: 12 KVIVIAGGIKNLGALTAKTFAL--ESVNLVLHYHQAKDSDTANKLKDELEDQGAKV-ALY 68
Query: 243 QA------------EKT--------ILTNYLGLVR--------------------TCVFL 262
Q+ + I N +G V +
Sbjct: 69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYF 128
Query: 263 F-----PLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
F + + ++ +++S
Sbjct: 129 FIKQAAKHMNPNGHIITIATSLL------------------------------------- 151
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A S YA +K V TR K EL Q +NA+ PG + T+
Sbjct: 152 AAYTGFYSTYAGNKAPVEHYTRAASK----ELMKQQISVNAIAPGPMDTSF 198
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 92/229 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLKDRASTVPFAIQA 244
+VA+VTGA++G+G I L DG+ + + A E ++ QA
Sbjct: 28 KVAIVTGASRGIGAAIAARLAS--DGFTVVINYAGKAAAAEEVAGKIEAAGGKA-LTAQA 84
Query: 245 ---------------------------------------------EKTILTNYLGLVRTC 259
++ I N G T
Sbjct: 85 DVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTL 144
Query: 260 VFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
LR R++N+S+S L
Sbjct: 145 REAAQRLRVGGRIINMSTSQVGL------------------------------------- 167
Query: 320 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P YA +K GV +T + K EL +D +NAV PG AT++
Sbjct: 168 LHPSYGIYAAAKAGVEAMTHVLSK----ELRGRDITVNAVAPGPTATDL 212
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 42/266 (15%), Positives = 74/266 (27%), Gaps = 107/266 (40%)
Query: 155 HPPSGASMWSRQGVDGPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYI 214
H SG + + + + + G + A VTG ++G+G I K L +G
Sbjct: 6 HHSSGVDLGTENLYFQSMMTSISLAG------KTAFVTGGSRGIGAAIAKRLAL--EGAA 57
Query: 215 ----YLTARDKKKGAEAVQVLKD---RASTVPFAIQA----------------------- 244
Y ++ V ++ RA AI+A
Sbjct: 58 VALTY--VNAAERAQAVVSEIEQAGGRA----VAIRADNRDAEAIEQAIRETVEALGGLD 111
Query: 245 ----------------------EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL 282
++ + N+ L R++ + S+ L
Sbjct: 112 ILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL 171
Query: 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQ 341
WP + Y+ SK + LT+
Sbjct: 172 V------------------------------------PWPGISLYSASKAALAGLTKGLA 195
Query: 342 KKFDCELGNQDKVINAVHPGYVATNM 367
+ +LG + +N VHPG T+M
Sbjct: 196 R----DLGPRGITVNIVHPGSTDTDM 217
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 46/231 (19%), Positives = 62/231 (26%), Gaps = 95/231 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKDRASTVPFAI 242
+VA+ TGA +G+G GI L G Y K E V LK + AI
Sbjct: 22 KVALTTGAGRGIGRGIAIELGR--RGASVVVNY--GSSSKAAEEVVAELKKLGAQG-VAI 76
Query: 243 QA---------------------------------------------EKTILTNYLGLVR 257
QA +K N G
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 136
Query: 258 TCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
RR R++ SS A V
Sbjct: 137 VAQQGLKHCRRGGRIILTSSIAA------------------------------------V 160
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G P+ + YA SK V R + + G + +N + PG V T+M
Sbjct: 161 MTGIPNHALYAGSKAAVEGFCRAFAV----DCGAKGVTVNCIAPGGVKTDM 207
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 90/233 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK------------- 232
+VA+VT + G+G I + L + G ++ +++R ++ V L+
Sbjct: 15 KVALVTASTDGIGLAIARRLAQD--GAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHV 72
Query: 233 ----DRASTVPFAIQA----------------------------EKTILTNYLGLVRTCV 260
DR V A+ +K + N V
Sbjct: 73 GKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTK 132
Query: 261 FLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
+ P + R V+ +SS + HP ++
Sbjct: 133 AVVPEMEKRGGGSVLIVSSVGAY------------------------------HPFPNLG 162
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
Y VSK + LT+ EL ++ +N + PG + TN S +
Sbjct: 163 ------PYNVSKTALLGLTKNLAV----ELAPRNIRVNCLAPGLIKTNFSQVL 205
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 37/234 (15%), Positives = 61/234 (26%), Gaps = 101/234 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKD---RASTVP 239
+VA+VTGA +G+G + L G Y A + E V +K A
Sbjct: 30 KVALVTGAGRGIGREMAMELGR--RGCKVIVNY--ANSTESAEEVVAAIKKNGSDA---- 81
Query: 240 FAIQA---------------------------------------------EKTILTNYLG 254
++A ++ N G
Sbjct: 82 ACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRG 141
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
+ L R++ + S G
Sbjct: 142 QFFVAREAYKHLEIGGRLILMGSITGQ--------------------------------- 168
Query: 315 AHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AK P A Y+ SK + R ++ ++ +N V PG + T+M
Sbjct: 169 ---AKAVPKHAVYSGSKGAIETFARCMAI----DMADKKITVNVVAPGGIKTDM 215
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 42/234 (17%), Positives = 64/234 (27%), Gaps = 101/234 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKD---RASTVP 239
+VA+VTG+ +G+G + L G Y A K + V +K A
Sbjct: 19 KVALVTGSGRGIGAAVAVHLGR--LGAKVVVNY--ANSTKDAEKVVSEIKALGSDA---- 70
Query: 240 FAIQA---------------------------------------------EKTILTNYLG 254
AI+A ++ N G
Sbjct: 71 IAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRG 130
Query: 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
+ L R+V SS+
Sbjct: 131 QFFVAREAYRHLTEGGRIVLTSSNTSK--------------------------------- 157
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P S Y+ SK V+ RI+ K + G++ +NAV PG T+M
Sbjct: 158 ---DFSVPKHSLYSGSKGAVDSFVRIFSK----DCGDKKITVNAVAPGGTVTDM 204
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 93/237 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
R+A+VTG G+G GI ++L + GY + +T R A + R + A+
Sbjct: 34 RIALVTGGGTGVGRGIAQALSAE--GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCD 91
Query: 245 -----------EKT--------ILTNYLGLVR---------------------TCVFL-- 262
+L N G T FL
Sbjct: 92 VGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCT 151
Query: 263 ---FPLLRRHA----RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315
F +++ R++N S + PR
Sbjct: 152 QHAFRMMKAQTPRGGRIINNGSISAQT------------------------------PRP 181
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+ A Y +K + LT+ + D + G AT+M++ M
Sbjct: 182 NSA------PYTATKHAITGLTKSTAL----DGRMHDIACGQIDIGNAATDMTARMS 228
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 54/209 (25%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+A+VT A G V++L + GY + AE + + T+ A Q
Sbjct: 2 VIALVTHARHFAGPAAVEALTQD--GYTVVCHDASFADAAERQRFESENPGTIALAEQKP 59
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQITNLELKKRLRQLREP-- 300
+ LV + + + V+ + I + L E
Sbjct: 60 E-------RLVDATL------QHGEAIDTIVS---NDY----IPRPMNRLPLEGTSEADI 99
Query: 301 -----VSLRS-LNITKEHPRAHVAKGW---------------PDSA-YAVSKIGVNLLTR 338
+ + + A G + Y ++ L
Sbjct: 100 RQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVE 159
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNM 367
K L ++ A+ P +
Sbjct: 160 SAAK----TLSRDGILLYAIGPNFFNNPT 184
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 23/222 (10%), Positives = 48/222 (21%), Gaps = 84/222 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARDKKKGAEAVQV---LKDRASTVP 239
R +V G LG V++ + I + ++ + V++ ++A V
Sbjct: 8 RRVLVYGGRGALGSRCVQAFRA--RNWWVASIDVVENEEASASVIVKMTDSFTEQADQVT 65
Query: 240 FAIQA-------------------------------EKTILTNYLGLVRTCVFLFPLLRR 268
+ + + + L+
Sbjct: 66 AEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE 125
Query: 269 HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYA 327
+ + A G P Y
Sbjct: 126 GGLLTLAGAKAAL-------------------------------------DGTPGMIGYG 148
Query: 328 VSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
++K V+ L + + AV P + T M
Sbjct: 149 MAKGAVHQLCQS----LAGKNSGMPSGAAAIAVLPVTLDTPM 186
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 8e-08
Identities = 37/235 (15%), Positives = 65/235 (27%), Gaps = 89/235 (37%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF--- 240
+++A+VTGA G+G + +L GY + L R E + D A VP
Sbjct: 27 GKKIAIVTGAGSGVGRAVAVALAGA--GYGVALAGRRLDALQETAAEIGDDALCVPTDVT 84
Query: 241 ---AIQA------------------------------------EKTILTNYLGLVRTCVF 261
+++A ++ + TN G
Sbjct: 85 DPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQE 144
Query: 262 LFPLLRRHA----RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
F +++ R++N S + PR +
Sbjct: 145 AFRVMKAQEPRGGRIINNGSISATS------------------------------PRPYS 174
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
A Y +K + LT+ + D + G T M+ M
Sbjct: 175 A------PYTATKHAITGLTKSTSL----DGRVHDIACGQIDIGNADTPMAQKMK 219
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 98/243 (40%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFA-- 241
+E+VA++TG++ G+G + G + +T R ++ E Q + +
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNS 62
Query: 242 IQA-------------------------------------------------EKTILTNY 252
+ A + T+ N
Sbjct: 63 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNL 122
Query: 253 LGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
++ P L +VN+SS A L
Sbjct: 123 RSVIALTKKAVPHLSSTKGEIVNISSIASGL----------------------------- 153
Query: 312 HPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSS 369
PD Y+++K ++ TR +L Q + +N++ PG VAT S
Sbjct: 154 -------HATPDFPYYSIAKAAIDQYTRNTAI----DLI-QHGIRVNSISPGLVATGFGS 201
Query: 370 FMG 372
MG
Sbjct: 202 AMG 204
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 42/241 (17%), Positives = 66/241 (27%), Gaps = 80/241 (33%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD--RASTVPFAIQ 243
+VA+VTGA G+G +V +L G + + R A + + D A+
Sbjct: 29 KVALVTGAAGGIGGAVVTALRAA--GARVAVADRAVAGIAADLHLPGDLREAAYADGLPG 86
Query: 244 A-------------------------------EKTILTNYLGLVRTCVFLFPLL--RRHA 270
A ++ N R C PL+
Sbjct: 87 AVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG 146
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVS 329
+VN++S G + P + Y ++
Sbjct: 147 AIVNVASCWGL-------------------------------------RPGPGHALYCLT 169
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERV 389
K + LT+ + Q INAV P V T M FD R
Sbjct: 170 KAALASLTQCMGM----DHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRT 225
Query: 390 I 390
+
Sbjct: 226 V 226
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 91/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD----RASTVPF- 240
+ A++TGA KG+G I ++ G + L+ RD + A + L + TV
Sbjct: 21 KRALITGATKGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGTDVHTVAID 78
Query: 241 -----AIQA--EKT--------ILTNYLGLVR--------------------TCVFLF-- 263
A + +L N G+ L
Sbjct: 79 LAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLAS 138
Query: 264 ----PLLRRHA--RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
++ ++ ++S+A P
Sbjct: 139 AVGKAMVAAGEGGAIITVASAAALA------------------------------PLPDH 168
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
AY SK G+ + T K ELG N+V P V T M
Sbjct: 169 Y------AYCTSKAGLVMAT----KVLARELGPHGIRANSVCPTVVLTEM 208
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 28/246 (11%), Positives = 53/246 (21%), Gaps = 101/246 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
V V+TGA++G G + L + ++AR + + + L + + + A
Sbjct: 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAA 66
Query: 245 -----------------------------------------------------EKTILTN 251
N
Sbjct: 67 ADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALN 126
Query: 252 YLGLVRTCVFLFPLLRR----HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307
++ + VVN+SS
Sbjct: 127 LTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL-------------------------- 160
Query: 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
KGW Y K ++L ++ E + + PG + +M
Sbjct: 161 --------QPYKGW--GLYCAGKAARDMLYQVLAA----E--EPSVRVLSYAPGPLDNDM 204
Query: 368 SSFMGN 373
Sbjct: 205 QQLARE 210
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 41/230 (17%), Positives = 63/230 (27%), Gaps = 91/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
VAVVTG + G+G V+ L E G + ARD ++ A L+
Sbjct: 9 AVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVC 66
Query: 233 ---DRASTVPFAIQAEKT-----IL-------------------------TNYLGLVRTC 259
D FA E+T IL + ++
Sbjct: 67 DVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPV 126
Query: 260 VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
P L R A +V ++S P H+
Sbjct: 127 RAFLPQLESRADAAIVCVNSLLAS------------------------------QPEPHM 156
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A + ++ GV L R E + +N + G V +
Sbjct: 157 V------ATSAARAGVKNLVRSMAF----EFAPKGVRVNGILIGLVESGQ 196
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 43/226 (19%), Positives = 60/226 (26%), Gaps = 87/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD----------KKKGAEAVQV---LK 232
R AVVTGA G+G I G ++ R G A V L
Sbjct: 32 RTAVVTGAGSGIGRAIAHGYARA--GAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLA 89
Query: 233 DRASTVPFAIQAEKT----ILTNYLGLVR--------------------TCVFLFP---- 264
D A + T +L N G++ ++
Sbjct: 90 DLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFG 149
Query: 265 ---LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
L R+V ++S G
Sbjct: 150 TAMLAHGSGRIVTIASMLSFQG------------------------------------GR 173
Query: 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+AYA SK V LT + E + +NA+ PGYV T
Sbjct: 174 NVAAYAASKHAVVGLT----RALASEWAGRGVGVNALAPGYVVTAN 215
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 40/236 (16%), Positives = 68/236 (28%), Gaps = 103/236 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK--DRASTVP---- 239
+VA++TG G+G I E+ G + +T R G +A + + D+
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 240 ----------FAIQA---------------------------EKTILTNYLGLVRTCVFL 262
+A K + N G VF
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDG-----VFF 119
Query: 263 -----FPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
++ A ++N+SS G +
Sbjct: 120 GTRLGIQRMKNKGLGASIINMSSIEGFV-------------------------------- 147
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
G P AY SK V ++++ + +D + N VHPGY+ T +
Sbjct: 148 -----GDPSLGAYNASKGAVRIMSKSAAL----DCALKDYDVRVNTVHPGYIKTPL 194
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+VAV+TG++ G+G I + ++ G +I L AR + EA + LK++ +
Sbjct: 8 KVAVITGSSSGIGLAIAEGFAKE--GAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVD 65
Query: 245 --------------------------------------------EKTILTNYLGLVRTCV 260
+ + VR
Sbjct: 66 VATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLAR 125
Query: 261 FLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
L P + R +++ +S + +
Sbjct: 126 GLVPGMRARGGGAIIHNASICA-VQPLWYE------------------------------ 154
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
Y V+K + + ++ E+ +D + +N ++PG + T
Sbjct: 155 -----PIYNVTKAALMMFSKTLAT----EVI-KDNIRVNCINPGLILTPD 194
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 86/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP-FAIQA 244
+VA+VTGA +G+G ++L + G + L + + G + L ++ IQ
Sbjct: 8 KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQC 65
Query: 245 -------------------------------------EKTILTNYLGLVRTCVFLFPLLR 267
EKT+ N + ++ +
Sbjct: 66 DVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMS 125
Query: 268 -----RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
++N+SS AG +
Sbjct: 126 KQNGGEGGIIINMSSLAGLM-------------------------------------PVA 148
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y SK G+ TR L N +NA+ PG+V T +
Sbjct: 149 QQPVYCASKHGIVGFTR--SAALAANLMNSGVRLNAICPGFVNTAI 192
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 93/244 (38%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD------ 233
S++ + +A++TGA++G+G I L GY + L AR K+ + +
Sbjct: 2 SLEKQKGLAIITGASQGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIMRSNKHVQ 59
Query: 234 RASTVPF------AIQA----------------------------------EKTILTNYL 253
+P K + N +
Sbjct: 60 EPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVI 119
Query: 254 GLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
+ ++ +++ + N++S A
Sbjct: 120 AQYGILKTVTEIMKVQKNGYIFNVASRAAK------------------------------ 149
Query: 312 HPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370
G+ D Y +K + L + EL + + PG+V T+M+
Sbjct: 150 -------YGFADGGIYGSTKFALLGLAESLYR----ELAPLGIRVTTLCPGWVNTDMAKK 198
Query: 371 MGNV 374
G
Sbjct: 199 AGTP 202
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 41/245 (16%), Positives = 70/245 (28%), Gaps = 95/245 (38%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV 228
GP S+ G++ +V V++G LG + + EQ G + L AR ++ +
Sbjct: 1 GPGSMGGLLTD------KVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVA 52
Query: 229 QVLKD---RASTVPF------AIQA----------------------------------- 244
+ + D RA +V +
Sbjct: 53 KQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEH 112
Query: 245 -EKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302
I G +R P L VVN++S SQ
Sbjct: 113 MRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAKY--------------- 157
Query: 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362
AY ++K + +++ ELG + +N+V PGY
Sbjct: 158 ---------------------GAYKMAKSALLAMSQTLAT----ELGEKGIRVNSVLPGY 192
Query: 363 VATNM 367
+
Sbjct: 193 IWGGT 197
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 29/223 (13%), Positives = 53/223 (23%), Gaps = 86/223 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARD--------KKKGAEAVQV-LKDRAS 236
++TGA++ +G L E G+ + ++ R ++ GA A+
Sbjct: 28 APILITGASQRVGLHCALRLLEH--GHRVIISYRTEHASVTELRQAGAVALYGDFSCETG 85
Query: 237 T---VPFAIQA--------------------------EKTILTNYLGLVRTCVFLFPLLR 267
+ + + L + PLL
Sbjct: 86 IMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLT 145
Query: 268 --RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325
A +V++S KG
Sbjct: 146 ASEVADIVHISDDVTR-------------------------------------KGSSKHI 168
Query: 326 -YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K G+ LT + KV N + P +
Sbjct: 169 AYCATKAGLESLTLSFAA----RFAPLVKV-NGIAPALLMFQP 206
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 54/221 (24%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV--PFA 241
S + ++TG++ G+G ++ G + +T R ++ E Q++ + +
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQIT--NLELKKRLRQ 296
+ A+ T ++ + + ++ ++ VN +AG + Q
Sbjct: 63 VVADVTTEDGQDQIINSTL------KQFGKIDVLVN---NAG----AAIPDAFGTTGTDQ 109
Query: 297 LREP------VSLRSL-NITKEHPRAHVAK----------------GWPD-SAYAVSKIG 332
+ ++L+++ +TK + H+ PD YA++K
Sbjct: 110 GIDIYHKTLKLNLQAVIEMTK-KVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAA 168
Query: 333 VNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMG 372
++ TR +L + + +N+V PG V T ++ MG
Sbjct: 169 LDQYTRSTAI----DLA-KFGIRVNSVSPGMVETGFTNAMG 204
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 36/218 (16%), Positives = 64/218 (29%), Gaps = 47/218 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV-----QVLKDRASTVPF 240
AV+TG + +G I L + G+ + + R + A+ + A
Sbjct: 12 PAAVITGGARRIGHSIAVRLHQ--QGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKG 69
Query: 241 AIQAEKTILTNYLGLVRTCVFLF----------------PLLRRHARVVNLSSSAGHL-- 282
+ ++L ++ F PLL +
Sbjct: 70 DLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQV 129
Query: 283 -SQI-TNLE-----LKKRLRQLREPVSLRS-----LNITKEHPRAHVAKGWPDSA-YAVS 329
+N ++ R+ E + RS +N+ A P Y ++
Sbjct: 130 AELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD----AMTDLPLPGFCVYTMA 185
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
K + LTR EL + +NAV PG
Sbjct: 186 KHALGGLTRAAAL----ELAPRHIRVNAVAPGLSLLPP 219
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 78/221 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAE----AVQV-LKDRASTVPF 240
+V V+TGA++G+G G+V++ ++ Y + T+R K A+ V + +
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDR--NYRVVATSRSIKPSADPDIHTVAGDISKPETADRI 86
Query: 241 AIQAEKT-----ILTNYLGLVR--------------------TCVFLF------PLLR-R 268
+ + L N G+ F +L+
Sbjct: 87 VREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG 146
Query: 269 HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAV 328
+V++++S + G P + ++
Sbjct: 147 SGHIVSITTSLVDQPMV----------------------------------GMPSALASL 172
Query: 329 SKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+K G+N +TR E +NAV PG + T M
Sbjct: 173 TKGGLNAVTRSLAM----EFSRSGVRVNAVSPGVIKTPMHP 209
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 48/213 (22%), Positives = 76/213 (35%), Gaps = 58/213 (27%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD-----------KKKGAEAVQV---L 231
+ A+VTG+ +GLGF + L G + L +KG +A V +
Sbjct: 10 KTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDV 67
Query: 232 KDRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHA----RV--VNLSSSAG 280
D + + + IL N G+ P++ +V NL+S A
Sbjct: 68 TDELAIEAAFSKLDAEGIHVDILINNAGIQYRK----PMVELELENWQKVIDTNLTS-AF 122
Query: 281 HLSQITNLELKKRLRQLREP------VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334
+S+ KR+ SL S + R VA Y +K G+
Sbjct: 123 LVSR----SAAKRMIARNSGGKIINIGSLTS-----QAARPTVA------PYTAAKGGIK 167
Query: 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+LT E + NA+ PGY+ T+M
Sbjct: 168 MLTCS----MAAEWAQFNIQTNAIGPGYILTDM 196
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 35/237 (14%), Positives = 55/237 (23%), Gaps = 100/237 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+V VVTGA++G+G GI LC+ G +Y+T R Q + + V
Sbjct: 6 QVCVVTGASRGIGRGIALQLCKA--GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDS 63
Query: 241 -----------AIQAE------------------------------------KTILTNYL 253
+ E
Sbjct: 64 SQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLR 123
Query: 254 GLVRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
G V+ L+ +V +SS
Sbjct: 124 GHYFCSVYGARLMVPAGQGLIVVISSPGSL------------------------------ 153
Query: 312 HPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ + Y V K + L EL ++ PG V T +
Sbjct: 154 --------QYMFNVPYGVGKAACDKLAADCAH----ELRRHGVSCVSLWPGIVQTEL 198
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 26/242 (10%), Positives = 53/242 (21%), Gaps = 84/242 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK--------DRAST 237
A+VT G G L E G+ + K+ E +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEA--GHTVACHDESFKQKDELEAFAETYPQLKPMSEQEP 59
Query: 238 VPFAIQAEKT-----ILTNYLGLVR---------------------TCVFLF------PL 265
+L + F +
Sbjct: 60 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQM 119
Query: 266 LR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+ + ++ ++S+ P ++
Sbjct: 120 KKRKSGHIIFITSATP------------------------------FGPWKELS------ 143
Query: 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFN 384
Y ++ G L K ELG + + A+ P Y+ + S + + +
Sbjct: 144 TYTSARAGACTLANALSK----ELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHV 199
Query: 385 AF 386
A
Sbjct: 200 AH 201
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 43/231 (18%), Positives = 68/231 (29%), Gaps = 98/231 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ ++TG +GLG + G + L ++GA + L D A
Sbjct: 6 KTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELGDAARYQHLDVTIE 63
Query: 240 --------FAIQA---------------------------EKTILTNYLGLVRTCVFL-- 262
+A + K + N G VF+
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTG-----VFIGM 118
Query: 263 ---FPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
P ++ +VN+SS+AG +
Sbjct: 119 KTVIPAMKDAGGGSIVNISSAAGLM----------------------------------- 143
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G S+Y SK GV L+++ ELG +N+VHPG T M
Sbjct: 144 --GLALTSSYGASKWGVRGLSKLAAV----ELGTDRIRVNSVHPGMTYTPM 188
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 37/242 (15%), Positives = 60/242 (24%), Gaps = 105/242 (43%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD------RASTVP 239
R +VTG G+G G+ L G + + R+ K A AVQ L+ P
Sbjct: 12 RTYLVTGGGSGIGKGVAAGLVAA--GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69
Query: 240 F------AIQA------------------------------------EKTILTNYLGLVR 257
+T+ N G
Sbjct: 70 TDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNG--- 126
Query: 258 TCVFLF------PLLRRHA-RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310
++R V +SS A
Sbjct: 127 --TMYVLKHAAREMVRGGGGSFVGISSIAASN---------------------------- 156
Query: 311 EHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
Y V+K V+ L + ELG +N++ PG + T++ +
Sbjct: 157 ---------THRWFGAYGVTKSAVDHLM----QLAADELGASWVRVNSIRPGLIRTDLVA 203
Query: 370 FM 371
+
Sbjct: 204 AI 205
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 31/229 (13%), Positives = 52/229 (22%), Gaps = 90/229 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
R AVVTG G+G + G + L+ D+ +AV L+ +
Sbjct: 32 RAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDV 89
Query: 241 ----AIQA-----------------------------------EKTILTNYLGLVRTCVF 261
+ I + G +
Sbjct: 90 RHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEA 149
Query: 262 LFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P L + +S AG +
Sbjct: 150 FLPRLLEQGTGGHIAFTASFAGLVPNAGL------------------------------- 178
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y V+K GV L + E+ ++ + P V T +
Sbjct: 179 -----GTYGVAKYGVVGLAETLAR----EVKPNGIGVSVLCPMVVETKL 218
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 36/234 (15%), Positives = 63/234 (26%), Gaps = 84/234 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ +VTG N+G+G +++ G + + R E + + A Q
Sbjct: 15 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCD 72
Query: 245 -------EKT------------ILTNYLGLVR--------------------TCVFLF-- 263
KT L G+ VF
Sbjct: 73 VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCR 132
Query: 264 ----PLLR--RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
L+ + +V SS + I N ++ +
Sbjct: 133 AVAKLWLQKQQKGSIVVTSSMSSQ---IIN--------------------------QSSL 163
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
Y SK + L + E + +NA+ PGYV T+ ++ M
Sbjct: 164 NGSLTQVFYNSSKAACSNLVKGLAA----EWASAGIRVNALSPGYVNTDQTAHM 213
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 41/224 (18%), Positives = 64/224 (28%), Gaps = 87/224 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ +VTGA G+G + + G + R+++ AEAV L+ A V
Sbjct: 7 KTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALEAEAIAVVADVSDP 64
Query: 240 -----FAIQAEKT-----ILTNYLGLVR--------------------TCVFLF-----P 264
+A + + ++ G+ T FL
Sbjct: 65 KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGE 124
Query: 265 LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+L +V S AG G
Sbjct: 125 VLEEGGSLVLTGSVAG--------------------------------------LGAFGL 146
Query: 325 A-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A YA K+GV L R EL + +N + PG + T M
Sbjct: 147 AHYAAGKLGVVGLARTLAL----ELARKGVRVNVLLPGLIQTPM 186
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 90/234 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+VA VTG++ G+G+ + ++ + G + + +A + K +
Sbjct: 35 KVASVTGSSGGIGWAVAEAYAQA--GADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNI 92
Query: 241 ----AIQA-------------------------------------EKTILTNYLGLVRTC 259
+++ K I + G+
Sbjct: 93 SDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCS 152
Query: 260 VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
+ + ++ SS +G + V
Sbjct: 153 HNIGKIFKKNGKGSLIITSSISGKI----------------------------------V 178
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
+ Y +K L K E +V N + PGY+ T+++ F
Sbjct: 179 NIPQLQAPYNTAKAACTHLA----KSLAIEWAPFARV-NTISPGYIDTDITDFA 227
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 37/237 (15%), Positives = 63/237 (26%), Gaps = 83/237 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD--RASTVPFAI- 242
+V +VTGA+ G+G I + ++ G + + A+ + D V +I
Sbjct: 9 KVVIVTGASMGIGRAIAERFVDE--GSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASID 66
Query: 243 QAEKT-----ILTNYLGLVR--------------------TCVFLF-----PLLRRHA-- 270
K +L N G+ + P + R
Sbjct: 67 HIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDP 126
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVS 329
+VN+SS + SAY S
Sbjct: 127 SIVNISSVQAS-------------------------------------IITKNASAYVTS 149
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIFDDSSTFNA 385
K V LT+ + + NAV P + T + + + D
Sbjct: 150 KHAVIGLTKSIAL----DYA--PLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEK 200
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 94/237 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLKDRASTVPFAIQA 244
+ A+VTG+++G+G L E +GY I + AR KK E + ++ V ++A
Sbjct: 5 KCALVTGSSRGVGKAAAIRLAE--NGYNIVINYARSKKAALETAEEIEKLGVKV-LVVKA 61
Query: 245 ---------------------------------------------EKTILTNYLGLVRTC 259
+ T+ N L+
Sbjct: 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCA 121
Query: 260 VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
L+ +V++SS
Sbjct: 122 QEAAKLMEKNGGGHIVSISSLGSIR----------------------------------- 146
Query: 318 AKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN 373
+ VSK + LTR EL + ++NAV G + T+ N
Sbjct: 147 --YLENYTTVGVSKAALEALTRYLAV----ELSPKQIIVNAVSGGAIDTDALKHFPN 197
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 97/234 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ +VTGA+KG+G + L + G + +TAR K+ + V + + I
Sbjct: 29 KKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGT 86
Query: 245 --------------------------------------------EKTILTNYLGLVRTCV 260
K++ N+L V V
Sbjct: 87 MEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTV 146
Query: 261 FLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
P+L++ + +V +SS AG ++ +P
Sbjct: 147 AALPMLKQSNGSIVVVSSLAGKVA----------------------------YPMV---- 174
Query: 320 GWPDSAYAVSKIGVNLLTRIYQKKFDC---ELGNQDKVI--NAVHPGYVATNMS 368
+AY+ SK ++ F E + G + T +
Sbjct: 175 ----AAYSASKFALDGF-------FSSIRKEYSVSRVNVSITLCVLGLIDTETA 217
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 89/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV-PFAIQA 244
+ A+VTG+ G+G I SL + G + + R ++ E ++ ++ + + A
Sbjct: 11 KTALVTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVA 68
Query: 245 -----------------------------------------EKTILTNYLGLVRTCVFLF 263
K N + VR
Sbjct: 69 DLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYL 128
Query: 264 PLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
+ R+ RV+ ++S A
Sbjct: 129 KKMIERKEGRVIFIASEAA-------------------------------------IMPS 151
Query: 322 PD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ + Y+ +K L+R + + +N + PG T
Sbjct: 152 QEMAHYSATKTMQLSLSRSLAE----LTTGTNVTVNTIMPGSTLTEG 194
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 7e-06
Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 81/220 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAS----TVPFA 241
+V ++T A +G+G + + G + T ++ K E + + T
Sbjct: 7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQ 64
Query: 242 IQA-------------------------------EKTILTNYLGLVRTCVFLFPLLRRH- 269
I + ++ N + P +
Sbjct: 65 IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK 124
Query: 270 -ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYA 327
++N+SS A + KG + Y+
Sbjct: 125 SGNIINMSSVASSV------------------------------------KGVVNRCVYS 148
Query: 328 VSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+K V LT+ + Q N V PG V T
Sbjct: 149 TTKAAVIGLTKSVAA----DFIQQGIRCNCVCPGTVDTPS 184
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 59/225 (26%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV--QVLKDRASTVPFAIQ 243
AVVTGA K +G I L + GY + + + + A ++ ++ K+R++T Q
Sbjct: 24 PAAVVTGAAKRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERSNTA-VVCQ 80
Query: 244 A----EKTILTNYLGLVRTCVFLF----------------PLLRRHA------------- 270
A + + ++ +C F PL++
Sbjct: 81 ADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQV 140
Query: 271 -RV--VNLSSSAGHLSQITNLELKKRLRQLREPVSLRS---LNITKEHPRAHVAKGWPD- 323
+ N + L+ +R + + + +N+ A V +
Sbjct: 141 AELIGTNA-IAPFLLTM----SFAQRQKGTNPNCTSSNLSIVNLCD----AMVDQPCMAF 191
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
S Y + K + LT+ EL +N V PG ++
Sbjct: 192 SLYNMGKHALVGLTQSAAL----ELAPYGIRVNGVAPGVSLLPVA 232
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 9e-06
Identities = 49/287 (17%), Positives = 76/287 (26%), Gaps = 107/287 (37%)
Query: 170 GPLSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSL------------CEQFDGYIYLT 217
GP S+ G + G RVA +TGA +G G + + +
Sbjct: 1 GPGSMAGKLEG------RVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYD 54
Query: 218 ARDKKKGAEAVQVLKD---RASTV------PFAIQA------------------------ 244
+E V++++ R ++
Sbjct: 55 PASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAP 114
Query: 245 -----------EKTILTNYLGLVRTCVFLFPLLRRHAR---VVNLSSSAGHLSQITNLEL 290
+ N G T + P + R ++ +SS+AG
Sbjct: 115 QAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM--------- 165
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELG 349
K P Y SK V L R + ELG
Sbjct: 166 ----------------------------KMQPFMIHYTASKHAVTGLARAFAA----ELG 193
Query: 350 NQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIG 396
+N+VHPG V T M S + T V++ FL
Sbjct: 194 KHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPD 240
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 91/235 (38%)
Query: 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RAS 236
S+ P V GA +G I K + G+ ++ R+ +K A V ++ R
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGGRIV 59
Query: 237 TVPF------AIQA----------------------------------EKTILTNYLGLV 256
+ A K
Sbjct: 60 ARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGF 119
Query: 257 RTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
+ L+ ++ ++A
Sbjct: 120 VSGRESARLMLAHGQGKIFFTGATASL--------------------------------- 146
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQD-KVINAVHPGYVATNM 367
+G +A+A +K G+ + + + EL ++ V + + V T
Sbjct: 147 ----RGGSGFAAFASAKFGLRAVAQSMAR----ELMPKNIHVAHLIIDSGVDTAW 193
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 27/198 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV-QVLKDRASTVPFAIQA 244
+ AV+TG+ G+G I ++L + G I L V + +S A
Sbjct: 26 KTAVITGSTSGIGLAIARTLAKA--GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83
Query: 245 EKTILTNYLGLVRTCVFLFPLL---------RRHARVVNLSSSAGHLSQITNLE-----L 290
+ T + ++ F + ++ + NL +
Sbjct: 84 DMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTI 143
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELG 349
+ + +++ R +NI AH P SAY +K G+ LT+ E+
Sbjct: 144 RGAIPPMKKKGWGRIINIAS----AHGLVASPFKSAYVAAKHGIMGLTKTVAL----EVA 195
Query: 350 NQDKVINAVHPGYVATNM 367
+N++ PGYV T +
Sbjct: 196 ESGVTVNSICPGYVLTPL 213
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 44/230 (19%), Positives = 67/230 (29%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+VAVVTGA++G+G I + L G + LTARD +K + +
Sbjct: 30 QVAVVTGASRGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAAGGEAESHACDL 87
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR---------------------TCVFLF-- 263
+ FA +L N G+ +L
Sbjct: 88 SHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLR 147
Query: 264 ----PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
++ + ++N+SS AG
Sbjct: 148 AFAPAMIAAKRGHIINISSLAGK------------------------------------- 170
Query: 319 KGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
D A Y SK G+N L + EL ++ V PG V T
Sbjct: 171 NPVADGAAYTASKWGLNGLMTSAAE----ELRQHQVRVSLVAPGSVRTEF 216
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 47/210 (22%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYI----YLTARDKKKGAEAVQVLKD---RASTVP 239
V +VTG ++G+G + + G+ Y A +++ V + + A
Sbjct: 27 PVVLVTGGSRGIGAAVCRLAAR--QGWRVGVNY--AANREAADAVVAAITESGGEA---- 78
Query: 240 FAIQAEKTILTNYLGLVRTCVFLF-PL---------LRRHARVVNLSSSAGHLSQI--TN 287
AI + + + F L + RV +S + ++ N
Sbjct: 79 VAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMS--VERIERMLRVN 136
Query: 288 L--------ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP--DSAYAVSKIGVNLLT 337
+ E +R+ +L +N++ G YA SK ++ T
Sbjct: 137 VTGSILCAAEAVRRMSRLYSGQGGAIVNVSS----MAAILGSATQYVDYAASKAAIDTFT 192
Query: 338 RIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ E+ + +NAV PG + T++
Sbjct: 193 IGLAR----EVAAEGIRVNAVRPGIIETDL 218
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 35/240 (14%), Positives = 66/240 (27%), Gaps = 94/240 (39%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD--RASTVPFA 241
S + ++TG++ G+G ++ G + +T R++ + E Q + + A
Sbjct: 25 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINA 82
Query: 242 IQA-----------------------------------------------EKTILTNYLG 254
+ A +KT N+
Sbjct: 83 VVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQA 142
Query: 255 LVRTCVFLFP-LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
++ L++ +VN+SS
Sbjct: 143 VIEMTQKTKEHLIKTKGEIVNVSSIVAGP------------------------------- 171
Query: 314 RAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+ YA +K ++ TR +L +N+V PG VAT MG
Sbjct: 172 -----QAHSGYPYYACAKAALDQYTRCTAI----DLIQHGVRVNSVSPGAVATGFMGAMG 222
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 38/229 (16%), Positives = 54/229 (23%), Gaps = 89/229 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
R VVTG KG+G GI G + + R V L S +Q +
Sbjct: 11 RSVVVTGGTKGIGRGIATVFARA--GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTD 68
Query: 246 KT--------------------ILTNYLGLVR--------------------TCVFLF-- 263
+ ++ G+ F
Sbjct: 69 VSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQ 128
Query: 264 ----PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
L+ RVV SS G ++
Sbjct: 129 ACLDALIASGSGRVVLTSSITGPITG----------------------YP---------- 156
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
GW S Y +K R EL +NA+ PG + T
Sbjct: 157 -GW--SHYGATKAAQLGFMRTAAI----ELAPHKITVNAIMPGNIMTEG 198
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 100/236 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP------ 239
+VA+V+G +G+G V+++ + G + ++G L D A V
Sbjct: 8 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQP 65
Query: 240 --------FAIQA---------------------------EKTILTNYLGLVRTCVFL-- 262
A+ A ++ + N G VFL
Sbjct: 66 AQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTG-----VFLGI 120
Query: 263 ---FPLLRRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
++ R ++N+SS G
Sbjct: 121 RAVVKPMKEAGRGSIINISSIEGLA----------------------------------- 145
Query: 318 AKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFM 371
G Y +K V LT+ ELG + +N++HPG V T M+ ++
Sbjct: 146 --GTVACHGYTATKFAVRGLTKSTAL----ELG-PSGIRVNSIHPGLVKTPMTDWV 194
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 23/221 (10%), Positives = 44/221 (19%), Gaps = 82/221 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSL--------------------CEQFDGYIYLTARDKKKGAE 226
+V G LG I++ DG T +++ +
Sbjct: 4 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQ 63
Query: 227 AVQVLK-----------------DRASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH 269
L+ +S A+ I + L+
Sbjct: 64 TASSLQGSQVDGVFCVAGGWAGGSASSKDFVK-NADLMIKQSVWSSAIAAKLATTHLKPG 122
Query: 270 ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAV 328
+ ++A P Y +
Sbjct: 123 GLLQLTGAAAAM-------------------------------------GPTPSMIGYGM 145
Query: 329 SKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
+K V+ LT + + P + T M
Sbjct: 146 AKAAVHHLTSS----LAAKDSGLPDNSAVLTIMPVTLDTPM 182
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 40/234 (17%), Positives = 66/234 (28%), Gaps = 82/234 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSL------------CEQFDGYIYL--TARDKKKGAEAVQVLK 232
+V +VTG +G G L C + Y T+RD ++ V+
Sbjct: 11 KVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG 70
Query: 233 DRASTVPF------AIQA---------------------------------EKTILTNYL 253
+A T A+ +++
Sbjct: 71 RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFV 130
Query: 254 GLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
G++ T P L A ++ S AG L + P
Sbjct: 131 GVINTVHAALPYLTSGASIITTGSVAG-------------------------LIAAAQPP 165
Query: 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A +G + Y+ +K V+ T +L Q N +HP V T+M
Sbjct: 166 GAGGPQGPGGAGYSYAKQLVDSYTLQLAA----QLAPQSIRANVIHPTNVNTDM 215
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/226 (10%), Positives = 45/226 (19%), Gaps = 88/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA- 244
+ + A G+G + L ++ ++ + ++
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTALAELKAINPKVNITFHTYD 63
Query: 245 -------------------------------------EKTILTNYLGLVRTCVFLFPLLR 267
E+TI N+ GLV T +
Sbjct: 64 VTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWD 123
Query: 268 -----RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
+ N+ S G
Sbjct: 124 KRKGGPGGIIANICSVTGF-------------------------------------NAIH 146
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ SK V T K +++PG T +
Sbjct: 147 QVPVYSASKAAVVSFTNSLAK----LAPITGVTAYSINPGITRTPL 188
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 27/228 (11%), Positives = 58/228 (25%), Gaps = 90/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+ A++TGA G+G I + G + ++ + V ++ +A
Sbjct: 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDI 69
Query: 241 ----AIQA----------------------------------EKTILTNYLGLVRTCVFL 262
+ A + N +
Sbjct: 70 TSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLV 129
Query: 263 FPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
P + ++ ++S A
Sbjct: 130 APEMEKNGGGVILTITSMAAEN-------------------------------------K 152
Query: 321 WPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ ++YA SK + L R +LG ++ +N + PG + T+
Sbjct: 153 NINMTSYASSKAAASHLVRNMAF----DLGEKNIRVNGIAPGAILTDA 196
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 54/217 (24%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA++TGA G G G+ K + G + + RDK + D A A+ A+
Sbjct: 10 KVALITGAGSGFGEGMAKRFAKG--GAKVVIVDRDKAGAERVAGEIGDAA----LAVAAD 63
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARV---VN---LSSSAGHLSQIT----------NLE 289
+ + V + + +V VN + + + N+
Sbjct: 64 ISKEADVDAAVEAAL------SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVR 117
Query: 290 -----LKKRLRQLRE----PVSLRSLNITKEHPRAHVA--KGWPD-SAYAVSKIGVNLLT 337
K + +E LN+ A + P+ + Y +K V +T
Sbjct: 118 GVYLMTSKLIPHFKENGAKGQECVILNV------ASTGAGRPRPNLAWYNATKGWVVSVT 171
Query: 338 RIYQKKFDCELGNQDKV-INAVHPGYVATNM-SSFMG 372
+ EL K+ + A++P T + ++FMG
Sbjct: 172 KALAI----ELA-PAKIRVVALNPVAGETPLLTTFMG 203
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 99/237 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
R A VTG G+G G+V+ L Q G + + + +A+ L+
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQL 66
Query: 233 ---DRASTVPFAIQA------------------------------EKTILTNYLGLVRTC 259
R A + + + N G+V
Sbjct: 67 DVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGV 126
Query: 260 VFLFPLLRRHAR--------VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311
P + + VVN +S A L+ +
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSP------------------------ 162
Query: 312 HPRAHVAKGWPDSAYAVSKIGVNLLTR-IYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K V L+ ++ L + ++ + PG V + +
Sbjct: 163 ------------GIYNTTKFAVRGLSESLHY-----SLLKYEIGVSVLCPGLVKSYI 202
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 34/237 (14%), Positives = 60/237 (25%), Gaps = 94/237 (39%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQ------FDGYIYLTARDKKKGAEAVQVLKD---RAS 236
+ + ++TGA KG+G I F+ + L++R + +
Sbjct: 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTD 61
Query: 237 TVPF------AIQA-----------------------------------EKTILTNYLGL 255
T+ ++ + T+ TN G
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGT 121
Query: 256 VRTCVFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
LF L+ + + ++S A
Sbjct: 122 FFLTQALFALMERQHSGHIFFITSVAAT-------------------------------- 149
Query: 314 RAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
K + S+ Y +SK G L + + I V PG V T M
Sbjct: 150 -----KAFRHSSIYCMSKFGQRGLVETMRL----YARKCNVRITDVQPGAVYTPMWG 197
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 38/256 (14%), Positives = 57/256 (22%), Gaps = 95/256 (37%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------- 238
VA++TG GLG +V + G + + + ++ E A V
Sbjct: 6 EVALITGGASGLGRALVDRFVAE--GARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSL 63
Query: 239 -------------------------------PFAIQAE--------KTILTNYLGLVRTC 259
A E N G +
Sbjct: 64 QDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAV 123
Query: 260 VFLFPLLRRH-ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P L VV S+AG
Sbjct: 124 KACLPALVSSRGSVVFTISNAGF------------------------------------- 146
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNI 376
Y +K V L R EL V +N V PG + T++
Sbjct: 147 YPNGGGPLYTATKHAVVGLVRQMAF----ELA--PHVRVNGVAPGGMNTDLRGPSSLGLS 200
Query: 377 FDDSSTFNAFERVISH 392
S+ + + S
Sbjct: 201 EQSISSVPLADMLKSV 216
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 37/228 (16%), Positives = 59/228 (25%), Gaps = 90/228 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
VA+VTGA G+G I + + G + +T + ++
Sbjct: 13 AVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNV 70
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR-------------------TCVFLF---- 263
D A +L N G +F
Sbjct: 71 TDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLA 130
Query: 264 --PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320
+ + ++N+SS AG
Sbjct: 131 APHMQKAGGGAILNISSMAG-------------------------------------ENT 153
Query: 321 WPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A Y SK VN LTR ++G +NA+ PG + T+
Sbjct: 154 NVRMASYGSSKAAVNHLTRNIAF----DVGPMGIRVNAIAPGAIKTDA 197
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 27/198 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLKDRASTVPFAIQA 244
+VAVVTG+ G+G GI +L Q G I L D + + L + A
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 245 EKTILTNYLGLVRTCVFLFPLL---------RRHARVVNLSSSAGHLSQITNLE-----L 290
+ + GLV V + + A + + + NL
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELG 349
L +++ R +NI AH + SAY +K GV T++ E
Sbjct: 123 AAALPHMKKQGFGRIINIAS----AHGLVASANKSAYVAAKHGVVGFTKVTAL----ETA 174
Query: 350 NQDKVINAVHPGYVATNM 367
Q NA+ PG+V T +
Sbjct: 175 GQGITANAICPGWVRTPL 192
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 36/225 (16%), Positives = 62/225 (27%), Gaps = 94/225 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK-------DRASTV 238
+VA+VTG + G+G +V +L G + + D+K K + V
Sbjct: 15 KVAIVTGGSSGIGLAVVDALVRY--GAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAV 72
Query: 239 PFAIQA---------------------------EKTILTNYLGLVRTCVFL-----FPLL 266
+ + I N G +L P++
Sbjct: 73 EKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNG-----SYLMAKYTIPVM 127
Query: 267 RRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD- 323
++N++S + +
Sbjct: 128 LAIGHGSIINIASVQSY-------------------------------------AATKNA 150
Query: 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
+AY SK + LTR + K+ NAV PG + T M
Sbjct: 151 AAYVTSKHALLGLTRSVAI----DYA--PKIRCNAVCPGTIMTPM 189
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 48/272 (17%), Positives = 69/272 (25%), Gaps = 71/272 (26%)
Query: 155 HPPSGASMWSRQGVDGPLSITGIVNGSVDPSE-------RVAVVTGANKGLGFGIVKSLC 207
H S + + +G V VA+VTGA K LG I + L
Sbjct: 8 HHHSSGLVPRGSHMGSSHHHHHHSSGLVPRGSHMTAPTVPVALVTGAAKRLGRSIAEGLH 67
Query: 208 EQFDGY-IYLTARDKKKGAEA-VQVLKDRASTVPFAIQA-----------------EKTI 248
+ GY + L A A L R +QA T+
Sbjct: 68 AE--GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 125
Query: 249 LTNYLGLVRTCVFLF----------------PLLR------RHARVVNLSSSAGHLSQI- 285
T LV C + PLLR +
Sbjct: 126 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 185
Query: 286 TNL--------ELKKRLRQLREPVSLRS---LNITKEHPRAHVAKGWPDSA-YAVSKIGV 333
+N R+ + +N+ A + Y ++K +
Sbjct: 186 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD----AMTNQPLLGYTIYTMAKGAL 241
Query: 334 NLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365
LTR EL +N V PG
Sbjct: 242 EGLTRSAAL----ELAPLQIRVNGVGPGLSVL 269
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 45/237 (18%), Positives = 64/237 (27%), Gaps = 64/237 (27%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEA-VQVLKDRASTVPF 240
P+ VA+VTGA K LG I + L +GY + L A A L R
Sbjct: 6 APTVPVALVTGAAKRLGRSIAEGLHA--EGYAVCLHYHRSAAEANALSATLNARRPNSAI 63
Query: 241 AIQA-----------------EKTILTNYLGLVRTCVFLF----------------PLLR 267
+QA T+ T LV C + PLLR
Sbjct: 64 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLR 123
Query: 268 ------RHARVVNLSSSAGHLSQI-TNL--------ELKKRLRQLREPVSLRS---LNIT 309
+ +N R+ + +N+
Sbjct: 124 NDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMV 183
Query: 310 KEHPRAHVAKGWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365
A + Y ++K + LTR EL +N V PG
Sbjct: 184 D----AMTNQPLLGYTIYTMAKGALEGLTRSAAL----ELAPLQIRVNGVGPGLSVL 232
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 39/239 (16%), Positives = 58/239 (24%), Gaps = 104/239 (43%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY---IYLTARDKKKGAEAVQVLK--------- 232
+ + ++TGA G+G + +F + L +K E K
Sbjct: 30 TGEIVLITGAGHGIG----RLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTF 85
Query: 233 -----DRASTVPFAIQA------------------------------EKTILTNYLGLVR 257
+R A + EKT N L
Sbjct: 86 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 145
Query: 258 TC-VFLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314
T FL P + H +V ++S+AGH+S P
Sbjct: 146 TTKAFL-PAMTKNNHGHIVTVASAAGHVSV----------------------------PF 176
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDC---EL--GNQDKV-INAVHPGYVATNM 367
AY SK EL V + P +V T
Sbjct: 177 L--------LAYCSSKFAAVGFH-------KTLTDELAALQITGVKTTCLCPNFVNTGF 220
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 45/210 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ ++G ++G+G I K + DG + L A+ + + + A +
Sbjct: 10 KTMFISGGSRGIGLAIAKRVAA--DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA 67
Query: 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQITNLELKKR--- 293
I + V V + + VN ++SA +L I + LK+
Sbjct: 68 LPIVGDIRDGDAVAAAVAKTV------EQFGGIDICVN-NASAINLGSIEEVPLKRFDLM 120
Query: 294 ---------------LRQLREPVSLRSLNITKEHPRAHVAKGWP-DSAYAVSKIGVNLLT 337
+ ++ + L ++ P + W + Y ++K G+ L
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKGRDNPHILTLS---PPIRLEPKWLRPTPYMMAKYGMTLCA 177
Query: 338 RIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ EL + N + P
Sbjct: 178 LGIAE----ELRDAGIASNTLWPRTTVATA 203
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 92/230 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTV-PFAIQA 244
++AVVT + GLGF L G + L +R+++K A + S +
Sbjct: 8 KLAVVTAGSSGLGFASALELARN--GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65
Query: 245 --------------------------------------------EKTILTNYLGLVRTCV 260
+++ V
Sbjct: 66 DIREPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGR 125
Query: 261 FLFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
+ + R+V + S P +L
Sbjct: 126 RAAEQMVEKGWGRMVYIGSVTL-----------------LRPWQDLAL------------ 156
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
+ ++ V + R EL V +NAV P + T+
Sbjct: 157 -------SNIMRLPVIGVVRTLAL----ELA-PHGVTVNAVLPSLILTDR 194
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 30/143 (20%), Positives = 42/143 (29%), Gaps = 46/143 (32%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYI-YLTARDKKKGAEAVQVLKDRASTVPF--- 240
S +V +VTGA+ G G I ++ G TAR + + V DRA +
Sbjct: 4 SAKVWLVTGASSGFGRAIAEAAVAA--GDTVIGTARRTEALDDLVAAYPDRAEAISLDVT 61
Query: 241 -------AI-------------------------------QAEKTILTNYLGLVRTCVFL 262
+ + G R L
Sbjct: 62 DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRAL 121
Query: 263 FPLLR--RHARVVNLSSSAGHLS 283
P +R VVN+SS G LS
Sbjct: 122 LPQMRERGSGSVVNISSFGGQLS 144
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 74/213 (34%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK--DRASTVPFAIQ 243
+ +V A++G+G + L ++ G + + AR+++ + D + +
Sbjct: 20 KGVLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFE 77
Query: 244 A---------------------------EKTILTNYLGLVRTCVFLFPLL--RRHARVVN 274
++ I + +L +++ P + + R+V
Sbjct: 78 KVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVA 137
Query: 275 LSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334
++S + +S I NL +++ +
Sbjct: 138 ITSFSV-ISPIENLYT-----------------------------------SNSARMALT 161
Query: 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ E+ +N V PG+ T
Sbjct: 162 GFLKTLSF----EVAPYGITVNCVAPGWTETER 190
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 40/235 (17%), Positives = 66/235 (28%), Gaps = 101/235 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVP--- 239
++A+VTGA+ G+G + G + +TAR+ AE + A+ +
Sbjct: 9 KIAIVTGASSGIGRAAALLFARE--GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDV 66
Query: 240 -----------FAIQA----------------------------EKTILTNYLGLVRTCV 260
A++ +T+ TN
Sbjct: 67 GDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTS-----A 121
Query: 261 FL-----FPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313
FL P + + SS GH +
Sbjct: 122 FLAAKYQVPAIAALGGGSLTFTSSFVGHTA------------------------------ 151
Query: 314 RAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G+ + YA SK G+ L + ELG + +NA+ PG T
Sbjct: 152 ------GFAGVAPYAASKAGLIGLVQALAV----ELGARGIRVNALLPGGTDTPA 196
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 36/222 (16%), Positives = 55/222 (24%), Gaps = 79/222 (35%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK----DRASTVPFA 241
+ VTGA KG+G+ + E G + + + D A
Sbjct: 8 KNVWVTGAGKGIGYATALAFVEA--GAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVC 65
Query: 242 IQAEKT-----ILTNYLGLVR--------------------TCVFLFP-------LLRRH 269
+ L N G++R F +R
Sbjct: 66 QRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRG 125
Query: 270 ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVS 329
+V ++S A H PR ++ AY S
Sbjct: 126 GAIVTVASDAAH------------------------------TPRIGMS------AYGAS 149
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371
K + L EL N V PG T+M +
Sbjct: 150 KAALKSLALSVGL----ELAGSGVRCNVVSPGSTDTDMQRTL 187
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 37/201 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQ--------FDGYIYLTARDKKKGAEAVQV---LKDRA 235
+ A+VTG+ G+G GI + L F A + G +AV L D A
Sbjct: 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVA 64
Query: 236 STVPFAIQAEKT-----ILTNYLGLVRTCVFL-FPLLRRHARV--VNLSSSAGHLSQITN 287
AE+ IL N G+ FPL ++ +NLS+ H +++
Sbjct: 65 QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPL-ESWDKIIALNLSA-VFHGTRLA- 121
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDC 346
L +R R +NI H G +AY +K GV LT++
Sbjct: 122 ------LPGMRARNWGRIINIAS----VHGLVGSTGKAAYVAAKHGVVGLTKVVGL---- 167
Query: 347 ELGNQDKVINAVHPGYVATNM 367
E + NA+ PG+V T +
Sbjct: 168 ETATSNVTCNAICPGWVLTPL 188
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGYVATNM 367
+ Y+ SK V+ LTR Q I N++HP + T M
Sbjct: 144 PIEQYAGYSASKAAVSALTRAAA----LSCRKQGYAIRVNSIHPDGIYTPM 190
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 55/212 (25%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD----RASTVPFA 241
+VA +TG GLG G+ L G + +R + + + +
Sbjct: 27 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 84
Query: 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARV--------VNLSSSAGHLS-----QITNL 288
++ + V + + N S LS IT++
Sbjct: 85 VRDPDMVQ----NTVSELI------KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDI 134
Query: 289 ELK----------KRLRQLREPVSLRSLNIT---KEHPRAHVAKGWPDSAYAVSKIGVNL 335
L K+L + ++ + L+IT E V A +K GV
Sbjct: 135 VLNGTAFVTLEIGKQLIKAQKGAAF--LSITTIYAETGSGFVV------PSASAKAGVEA 186
Query: 336 LTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
++ K E G N + PG + T
Sbjct: 187 MS----KSLAAEWGKYGMRFNVIQPGPIKTKG 214
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
RVA+VTG ++GLGFGI + L E G + + +R+ ++ +EA Q L ++ A +
Sbjct: 22 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC 78
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 43/227 (18%), Positives = 68/227 (29%), Gaps = 89/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
R A+VTG +KG+G I ++L + G + + D V L++ V
Sbjct: 13 RKAIVTGGSKGIGAAIARALDKA--GATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKR 70
Query: 241 -AIQA--EKT--------ILTNYLGLVR--------------------TCVFL------- 262
++ A +K +L G+ VFL
Sbjct: 71 ASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACR 130
Query: 263 -FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
F +VN +S A G
Sbjct: 131 HFLASNTKGVIVNTASLAAK-------------------------------------VGA 153
Query: 322 PDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P A Y+ SK V T+ + E+ ++ +N V PG+V T M
Sbjct: 154 PLLAHYSASKFAVFGWTQALAR----EMAPKNIRVNCVCPGFVKTAM 196
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 42/134 (31%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF------ 240
+ V+TGA+ GLG + K + G YLT R + K + L +
Sbjct: 3 LIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQ 60
Query: 241 AIQA--------------------------------EKTILTNYLGLVRTCVFLFP-LLR 267
++ + I N + L
Sbjct: 61 EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKD 120
Query: 268 RHARVVNLSSSAGH 281
+ VV + S+A
Sbjct: 121 QPVNVVMIMSTAAQ 134
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 30/226 (13%), Positives = 63/226 (27%), Gaps = 88/226 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAS------TVP 239
RV +VTG G+G + + G Y+ + ++ + +A +
Sbjct: 28 RVCIVTGGGSGIGRATAELFAKN--GAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSA 85
Query: 240 FAIQA-----------------------------------EKTILTNYLGLVRTCVFLFP 264
++ ++ + N G+ ++ P
Sbjct: 86 KDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIP 145
Query: 265 LLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322
++RR+ ++N +S
Sbjct: 146 VMRRNGGGSIINTTSYTAT-------------------------------------SAIA 168
Query: 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
D +AY SK ++ LTR + + +NAV PG + +
Sbjct: 169 DRTAYVASKGAISSLTRAMAM----DHAKEGIRVNAVAPGTIDSPY 210
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 51/299 (17%), Positives = 76/299 (25%), Gaps = 108/299 (36%)
Query: 162 MWSRQG-VDGPLSITGIVNGSVDPSERVAVVTGANKGLGFG------------IVKSLCE 208
M + + GP S+ G V G +VA +TGA +G G I +C+
Sbjct: 9 MGTLEAQTQGPGSMAGKVEG------KVAFITGAARGQGRSHAITLAREGADIIAIDVCK 62
Query: 209 QFDGYIYLTARD----------KKKGAEAVQVLKD--RASTVPFAIQA------------ 244
Q DG + + G + D + A+
Sbjct: 63 QLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVL 122
Query: 245 --------------------EKTILTNYLGLVRTCVFLFPLL---RRHARVVNLSSSAGH 281
I N G T P + +R +V SS G
Sbjct: 123 ANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL 182
Query: 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIY 340
+G + Y SK G++ L R
Sbjct: 183 -------------------------------------RGAENIGNYIASKHGLHGLMRTM 205
Query: 341 QKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQI 399
ELG ++ +N V P VAT M +F E +
Sbjct: 206 AL----ELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVL 260
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 37/231 (16%), Positives = 62/231 (26%), Gaps = 99/231 (42%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD---------RAS 236
+V VVTG +G+G GIV++ G + + +D+ G Q L +
Sbjct: 10 KVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQELPGAVFILCDVTQED 67
Query: 237 TVPFAIQA--------------------------------EKTILTNYLGLVRTCVFL-- 262
V + + + N LG +
Sbjct: 68 DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLG-----TYTLT 122
Query: 263 ---FPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
P LR+ V+N+SS G
Sbjct: 123 KLALPYLRKSQGNVINISSLVGA------------------------------------- 145
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
G Y +K V +T+ + V +N + PG + T +
Sbjct: 146 IGQAQAVPYVATKGAVTAMTKALAL----DES-PYGVRVNCISPGNIWTPL 191
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 86/217 (39%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS----TVPFAIQ 243
++TGA GLG + G+ + L+ R AE + + RA +
Sbjct: 3 VLITGATGGLG----GAFARALKGHDLLLSGRRAGALAELAREVGARALPADLADELEAK 58
Query: 244 A-------------------------------EKTILTNYLGLVRTCVFLFPLL--RRHA 270
A E+ + + L + ++ A
Sbjct: 59 ALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAF----VLKHARFQKGA 114
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSK 330
R V + ++ P +AYA +K
Sbjct: 115 RAVFFGAYPRYVQV----------------------------PGF--------AAYAAAK 138
Query: 331 IGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ EL + + V VAT +
Sbjct: 139 GALEAYLEA----ARKELLREGVHLVLVRLPAVATGL 171
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 95/231 (41%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+V +VTG+ G+G ++L + G + + + + + +
Sbjct: 10 KVGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDV 67
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVRTC-----------------------VFLF 263
D S A + L N +
Sbjct: 68 SDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWC 127
Query: 264 ------PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316
+ + +VN SS+A L
Sbjct: 128 TRAVYKKMTKRGGGAIVNQSSTAAWLYS-------------------------------- 155
Query: 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ Y ++K+G+N LT+ + ELG ++ INA+ PG + T
Sbjct: 156 -------NYYGLAKVGINGLTQQLSR----ELGGRNIRINAIAPGPIDTEA 195
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 42/234 (17%), Positives = 67/234 (28%), Gaps = 82/234 (35%)
Query: 172 LSITGIVNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQV 230
++ T R +VTG N+G+G I + L G+ + +T R V
Sbjct: 1 MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSGAPKGLFGV 58
Query: 231 ---LKDRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFL 262
+ D + E+ +L + GL T F
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFR 118
Query: 263 F------PLLR-RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHP 313
+ R + R++ + S +G N
Sbjct: 119 VAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQAN-------------------------- 152
Query: 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
YA SK GV + R + EL + N V PGY+ T+M
Sbjct: 153 ------------YAASKAGVIGMARSIAR----ELSKANVTANVVAPGYIDTDM 190
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 78/542 (14%), Positives = 147/542 (27%), Gaps = 169/542 (31%)
Query: 14 LMFLTLKSVAIGSLLLFIATVSVLSRIKY-WLSPSSPPVVTPVTTFSSSP---VNAFVSP 69
+F TL S + F+ V RI Y +L ++P+ T P ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL---RINYKFL-------MSPIKTEQRQPSMMTRMYIEQ 115
Query: 70 VNAFASPVNAFA----------SPLRNAV--LQSEAG------DGNG---------SNIH 102
+ + FA LR A+ L+ G+G +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 103 VHIHMNESQGMHWGTSSHIPDPAS-----------SYPPMVPMPDHTYAQNPYPYPPA-- 149
V M+ + W + P + P DH+
Sbjct: 176 VQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLRIHSI 230
Query: 150 ----RDTYLHPPSGASM------WSRQGVDG------PLSIT---GIVNGSVDPSERVAV 190
R P + + + + L T + + +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 191 VTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-----------LKDRASTVP 239
+ + L VKSL + YL R + E + ++D +T
Sbjct: 291 LDHHSMTLTPDEVKSLLLK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 240 F--AIQAEK--TILTNYL-----GLVRTC---VFLFP----------------------- 264
+ +K TI+ + L R + +FP
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 265 ----------LLRRHARVVNLSSSAGHLSQITNLELKKRL-RQLREPVSLRSLNITKEHP 313
L+ + + +S + +L LE + L R + + NI K
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-----HYNIPKTFD 460
Query: 314 RAHVAKGWPDSAYAVSKIG-----------VNLLTRIYQK-KFDCELGNQDKVINAVHPG 361
+ + D Y S IG + L ++ +F L K+ +
Sbjct: 461 SDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQ--KIRHDSTAW 514
Query: 362 YVATNMSSFMGNVN-----IFDDSSTFNAFERVISHFLIGQQINTFI-PAIYTVPFAIQA 415
+ ++ + + + I D+ + I FL + N + A+ A
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 416 EK 417
E
Sbjct: 575 ED 576
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 38/229 (16%), Positives = 55/229 (24%), Gaps = 89/229 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
R +VTG KG+G GI G + + AR ++ + L
Sbjct: 42 RSVLVTGGTKGIGRGIATVFARA--GANVAVAARSPRELSSVTAELGELGAGNVIGVRLD 99
Query: 233 --DRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF-- 263
D S A ++ G+
Sbjct: 100 VSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQ 159
Query: 264 ----PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318
PL RV+ SS G ++
Sbjct: 160 ACLAPLTASGRGRVILTSSITGPVTG----------------------YP---------- 187
Query: 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
GW S Y SK R EL + +NA+ PG + T
Sbjct: 188 -GW--SHYGASKAAQLGFMRTAAI----ELAPRGVTVNAILPGNILTEG 229
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 41/209 (19%), Positives = 67/209 (32%), Gaps = 45/209 (21%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDKKKGAEAVQVLK------------ 232
VA+VTG +G+G GI ++L G+ I +T D + A + L
Sbjct: 30 PVAIVTGGRRGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGARVIFLRAD 87
Query: 233 --DRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHA----RV--VNLSSSA 279
D +S L N G+ + L + VNL
Sbjct: 88 LADLSSHQATVDAVVAEFGRIDCLVNNAGI--ASIVRDDFLDLKPENFDTIVGVNLRG-T 144
Query: 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA-YAVSKIGVNLLTR 338
+Q + K + S +NIT P+ Y +SK G+ ++
Sbjct: 145 VFFTQ----AVLKAMLASDARASRSIINITS----VSAVMTSPERLDYCMSKAGLAAFSQ 196
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNM 367
L + V PG + ++M
Sbjct: 197 GLAL----RLAETGIAVFEVRPGIIRSDM 221
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 39/232 (16%), Positives = 61/232 (26%), Gaps = 95/232 (40%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF---- 240
+ ++TGA++G+G + L + GY + L ARD+K+ L + A +P
Sbjct: 5 KGAVLITGASRGIGEATARLLHAK--GYRVGLMARDEKRLQALAAEL-EGALPLPGDVRE 61
Query: 241 --AIQA-----------------------------------EKTILTNYLGLVRTCVFLF 263
+ TN G
Sbjct: 62 EGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAV 121
Query: 264 PLLRRHAR--VVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
P L R +VN+ S AG +
Sbjct: 122 PALLRRGGGTIVNVGSLAGK-------------------------------------NPF 144
Query: 322 PDSA-YAVSKIGVNLLT---RIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369
A Y SK G+ L +L + + V PG V T +
Sbjct: 145 KGGAAYNASKFGLLGLAGAAM-------LDLREANVRVVNVLPGSVDTGFAG 189
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G + Y V+K G+ LTR G+Q AV PG V TN+
Sbjct: 150 GGFAGAPYTVAKHGLIGLTRSIAA----HYGDQGIRAVAVLPGTVKTNI 194
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNI 376
K +P Y +K GV L R + ELG Q + +N+VHP +V T M G +
Sbjct: 170 KAYPHTGHYVAAKHGVVGLMRAFGV----ELG-QHMIRVNSVHPTHVKTPMLHNEGTFKM 224
Query: 377 FDDSSTFNAFERVISHFLIGQQI 399
F + + + +
Sbjct: 225 FRPDLENPGPDDMAPICQMFHTL 247
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+ A++TGA+ G+G + + E G + + AR +
Sbjct: 33 KRALITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAG 78
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 45/218 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP------ 239
+ +TGA++G+G I DG + + A+ + + A+ V
Sbjct: 7 KTLFITGASRGIGLAIALRAAR--DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG 64
Query: 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARV---VNLSSSAGHLSQITNLELKK---- 292
A++ + V V + VN ++SA L + +K+
Sbjct: 65 LALKCDIREEDQVRAAVAATV------DTFGGIDILVN-NASAIWLRGTLDTPMKRFDLM 117
Query: 293 -----R---------LRQLREPVSLRSLNITKEHPRAHVAKGWP-DSAYAVSKIGVNLLT 337
R L L + + L + P + W + Y ++K+G++L+T
Sbjct: 118 QQVNARGSFVCAQACLPHLLQAPNPHILTLAP--PPSLNPAWWGAHTGYTLAKMGMSLVT 175
Query: 338 RIYQKKFDCELGNQDKVINAVHPG-YVATNMSSFMGNV 374
E G Q INA+ P +AT+ + + V
Sbjct: 176 LGLAA----EFGPQGVAINALWPRTVIATDAINMLPGV 209
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G P+ +AY SK + LT +L + +NA+ PGY+
Sbjct: 150 GPPNMAAYGTSKGAIIALTETAAL----DLAPYNIRVNAISPGYMGPGF 194
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 320 GWPDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
WP YA SK G+ L+T E + +N + PG + T +
Sbjct: 151 PWPLFVHYAASKGGMKLMTETLAL----EYAPKGIRVNNIGPGAINTPI 195
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
AY +SK G+ L+RI EL + N + P +V T M
Sbjct: 168 AVGGTGAYGMSKAGIIQLSRITAA----ELR-SSGIRSNTLLPAFVDTPM 212
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 39/224 (17%), Positives = 63/224 (28%), Gaps = 87/224 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK---------DRAS 236
+ ++TGA G+G ++ ++ G + ++ EA + + D AS
Sbjct: 6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAEAVGAHPVVMDVADPAS 63
Query: 237 TVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF------PL 265
+A + +Y G+ R T FL +
Sbjct: 64 VERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAM 123
Query: 266 LR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
+V +S V G
Sbjct: 124 REKNPGSIVLTASR--------------------------------------VYLGNLGQ 145
Query: 325 A-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A YA S GV LTR ELG +N + PG++ T M
Sbjct: 146 ANYAASMAGVVGLTRTLAL----ELGRWGIRVNTLAPGFIETRM 185
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 86/223 (38%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
+ +++TGA+ G+G I + L + G + ++ +++K LKD + +
Sbjct: 15 KTSLITGASSGIGSAIARLLHKL--GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANK 72
Query: 243 -QAEK--------TILTNYLGLVR--------------------TCVFLF------PLLR 267
+ IL G+ F+ +++
Sbjct: 73 EECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQ 132
Query: 268 -RHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324
R+ R++N+SS G N
Sbjct: 133 KRYGRIINISSIVGIAGNPGQAN------------------------------------- 155
Query: 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y SK G+ +T+ E+ + +NAV PG++ ++M
Sbjct: 156 -YCASKAGLIGMTKSLSY----EVATRGITVNAVAPGFIKSDM 193
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 43/232 (18%), Positives = 67/232 (28%), Gaps = 95/232 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
VA+VTGA G+G I + L ++ G +++ AR ++ ++ L+
Sbjct: 23 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDV 80
Query: 233 -DRASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLFP-- 264
+ +L N G T VF
Sbjct: 81 RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQ 140
Query: 265 -------LLRRHARVVNLSSSAGHLSQI--TNLELKKRLRQLREPVSLRSLNITKEHPRA 315
L R R+VN++S+ G +
Sbjct: 141 VLKAGGMLERGTGRIVNIASTGGKQGVVHAAP---------------------------- 172
Query: 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y+ SK GV T+ EL +NAV PG+V T M
Sbjct: 173 ----------YSASKHGVVGFTKALGL----ELARTGITVNAVCPGFVETPM 210
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 47/230 (20%), Positives = 65/230 (28%), Gaps = 91/230 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+ A VTG + G+G + ++L + G +Y ARD K + AV L+
Sbjct: 25 QTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDV 82
Query: 233 -DRASTVPFAIQAEK-----TILTNYLGLVR--------------------TCVFLFP-- 264
A + IL N G T VF
Sbjct: 83 TSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTRE 142
Query: 265 -------LLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317
R+VN++S+ G +
Sbjct: 143 VLRAGGMREAGWGRIVNIASTGGKQGV------------------------------MYA 172
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
A Y SK GV T+ EL +NAV PGYV T M
Sbjct: 173 A------PYTASKHGVVGFTKSVGF----ELAKTGITVNAVCPGYVETPM 212
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+P SAY SK V LT+ + NAV PG + T M
Sbjct: 148 AFPGRSAYTTSKGAVLQLTKSVAV----DYAGSGIRCNAVCPGMIETPM 192
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 319 KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ +AY SK G+ LTR +L +NAV PG +AT
Sbjct: 141 FAEQENAAYNASKGGLVNLTRSLAL----DLAPLRIRVNAVAPGAIATEA 186
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 45/218 (20%), Positives = 71/218 (32%), Gaps = 80/218 (36%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQV---LKDRASTVPFAI 242
R +VTG N+G+G I ++ + G + +T R + + V + D
Sbjct: 22 RSVLVTGGNRGIGLAIARAFADA--GDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYK 79
Query: 243 QAEKT-----ILTNYLGLVR--------------------TCVFLF------PLLR-RHA 270
+ E+T +L G+ + T F +LR +
Sbjct: 80 EIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKG 139
Query: 271 RVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA-YAVS 329
RVV +SS G G A YA S
Sbjct: 140 RVVLISSVVG-------------------------------------LLGSAGQANYAAS 162
Query: 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
K G+ R + ELG+++ N V PG+V T+M
Sbjct: 163 KAGLVGFARSLAR----ELGSRNITFNVVAPGFVDTDM 196
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
RVA+VTG + +G V +L E G + + D+ +AV+ L+
Sbjct: 14 RVAIVTGGAQNIGLACVTALAEA--GARVIIADLDEAMATKAVEDLRM 59
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNM 367
+ A Y +K V LT ELG + + +N V P VA+ +
Sbjct: 156 SFTAGEGVSHVYTATKHAVLGLTTSLC----TELG-EYGIRVNCVSPYIVASPL 204
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 315 AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
P +AY +K + + ELG +NAV PG + TN+
Sbjct: 168 GTRTFTTPGATAYTATKAAQVAIVQQLAL----ELGKHHIRVNAVCPGAIETNI 217
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
+ +AYA +K + LTR + G NA+ PG V T
Sbjct: 152 AYDMSTAYACTKAAIETLTRYVAT----QYGRHGVRCNAIAPGLVRTPR 196
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 39/188 (20%)
Query: 185 SERVAVVTGANKG-LGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-KDRAST----- 237
++ ++TGA KG +G +++ L + + T+R K+ + Q + +
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLI 534
Query: 238 -VPFAIQAEKT---ILTNY---------LGLVRTCVFLFPLLRRHARVV-NLSSSA--GH 281
VPF Q K L + LG + F + + ++ S + H
Sbjct: 535 VVPFN-QGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAH 593
Query: 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA-KGWP-------DSAYAVSKIGV 333
+TN+ R + +S + P A V P D Y+ SK+ +
Sbjct: 594 RIMLTNIL-----RMMGCVKKQKSARGIETRP-AQVILPMSPNHGTFGGDGMYSESKLSL 647
Query: 334 N-LLTRIY 340
L R +
Sbjct: 648 ETLFNRWH 655
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 54/148 (36%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYI-YLTARD-KKKGAEAVQVLKDRASTVPFAI 242
S+++ ++TGA+ G G ++L G+ Y + RD + A V+ + A +
Sbjct: 4 SKKIILITGASSGFGRLTAEALAGA--GHRVYASMRDIVGRNASNVEAIAGFARDNDVDL 61
Query: 243 ------------------------------------------------QAEKTILTNYLG 254
Q + N L
Sbjct: 62 RTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLS 121
Query: 255 LVRTCVFLFPLLR--RHARVVNLSSSAG 280
R P +R +H ++ +SSS+
Sbjct: 122 TQRVNRAALPHMRRQKHGLLIWISSSSS 149
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 47/139 (33%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF------ 240
+ +VTGA G G I + +Q G+ + T R +++ E L D
Sbjct: 2 IVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRA 59
Query: 241 AIQA------------------------------------EKTILTNYLGLVRTCVFLFP 264
AI+ E I TN GLV + P
Sbjct: 60 AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLP 119
Query: 265 LLRRHAR--VVNLSSSAGH 281
+ ++N+ S+AG
Sbjct: 120 GMVERNHGHIINIGSTAGS 138
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 9e-04
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
G + S YA +K GV LTR E G INA+ PG + T M
Sbjct: 158 GIGNQSGYAAAKHGVVGLTRNSAV----EYGRYGIRINAIAPGAIWTPM 202
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 9e-04
Identities = 36/227 (15%), Positives = 55/227 (24%), Gaps = 89/227 (39%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY----IYLTARD------KKKGAEAVQV---LKD 233
++AV+TG G+G I + + G L + G + V +
Sbjct: 8 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ 65
Query: 234 RASTVPFAIQAEKT-----ILTNYLGLVR--------------------TCVFLF----- 263
F Q T IL N G+ FL
Sbjct: 66 PGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFV 125
Query: 264 -PLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321
+ R R++NL+S+
Sbjct: 126 PGMKRNGWGRIINLTSTTYW-------------------------------------LKI 148
Query: 322 PDSA-YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367
Y +K TR +LG +NA+ P V T
Sbjct: 149 EAYTHYISTKAANIGFTRALAS----DLGKDGITVNAIAPSLVRTAT 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.98 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.98 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.97 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.97 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.97 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.97 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.97 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.97 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.97 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.97 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.97 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.97 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.97 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.97 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.97 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.97 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.97 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.97 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.97 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.97 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.97 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.97 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.97 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.97 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.97 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.97 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.97 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.97 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.97 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.97 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.97 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.97 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.97 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.97 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.97 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.97 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.97 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.97 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.97 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.97 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.97 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.97 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.97 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.97 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.97 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.97 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.97 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.97 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.97 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.97 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.97 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.96 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.96 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.96 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.96 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.96 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.96 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.96 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.96 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.96 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.96 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.96 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.96 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.96 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.96 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.96 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.96 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.96 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.96 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.96 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.96 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.96 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.96 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.96 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.96 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.96 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.96 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.96 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.96 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.96 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.96 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.96 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.96 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.96 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.96 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.96 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.96 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.96 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.96 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.96 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.96 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.96 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.96 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.96 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.96 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.96 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.96 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.96 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.96 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.96 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.96 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.96 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.96 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.96 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.96 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.96 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.96 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.96 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.95 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.95 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.95 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.95 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.95 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.95 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.95 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.95 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.95 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.95 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.95 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.95 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.95 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.95 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.95 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.95 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.95 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.95 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.95 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.95 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.95 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.95 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.95 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.95 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.95 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.95 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.95 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.95 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.95 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.95 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.95 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.95 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.95 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.95 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.95 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.94 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.94 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.94 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.94 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.94 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.94 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.94 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.94 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.94 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.94 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.94 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.94 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.94 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.94 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.94 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.94 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.94 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.94 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.94 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.94 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.94 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.93 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.93 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.93 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.93 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.93 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.93 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.93 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.93 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.93 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.93 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.93 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.93 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.93 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.93 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.93 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.93 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.93 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.92 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.92 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.92 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.92 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.91 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.91 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.91 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.91 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.91 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.91 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.91 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.9 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.89 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.88 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.86 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.86 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.83 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.83 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.83 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.82 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.76 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.75 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.72 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.68 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.68 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.67 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.63 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.61 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.6 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.6 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.58 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.58 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.58 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.57 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.53 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.51 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.51 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.5 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.5 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.5 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.49 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.48 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.48 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.47 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.46 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.46 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.45 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.45 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.44 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.44 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.44 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.43 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.42 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.42 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.42 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.41 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.41 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.41 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.4 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.4 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.38 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.37 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.37 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.37 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.36 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.36 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.35 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.34 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.34 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.34 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.31 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.31 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.3 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.3 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.3 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.3 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.29 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.29 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.29 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.25 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.24 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.23 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.22 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.22 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.21 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.2 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.19 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.19 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.19 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.18 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.18 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.18 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.16 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.14 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.14 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.13 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.13 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.13 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.09 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.08 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.03 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.03 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 98.97 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 98.95 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 98.94 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 98.92 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 98.91 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 98.85 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 98.84 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 98.72 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 98.7 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 98.62 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 98.58 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 98.58 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 98.51 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 98.38 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 98.26 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.1 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.09 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 97.93 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.74 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.65 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.51 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.46 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.43 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.43 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.4 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.37 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.35 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.33 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.31 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.29 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.26 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.25 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.2 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.19 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.18 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.09 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.06 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.04 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.02 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.98 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.97 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.93 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.93 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.92 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.88 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.85 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.82 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.76 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.72 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.71 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.7 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.49 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.48 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.41 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 96.24 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.24 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.22 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.05 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.03 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.97 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.94 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.83 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.81 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.8 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.78 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.72 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.72 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.6 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 95.52 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.5 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.49 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.46 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.42 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.4 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.19 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.17 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.17 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.08 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.06 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.05 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.92 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.91 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.89 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.89 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.81 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.8 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.73 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.72 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.71 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.7 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 94.7 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.64 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.58 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.55 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.44 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.42 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.4 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.37 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.28 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 94.26 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.23 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.21 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.18 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.1 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.03 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 93.99 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 93.91 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.84 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.81 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 93.77 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 93.64 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 93.57 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 93.52 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.51 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.51 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 93.44 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.36 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.19 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.04 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 93.02 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.96 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 92.92 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 92.85 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.81 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 92.73 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.62 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 92.56 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 92.47 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 92.46 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 92.32 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.21 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 92.19 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 92.1 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 92.08 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 91.97 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 91.97 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 91.94 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 91.81 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.66 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 91.65 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.48 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 91.43 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 91.39 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 91.35 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 91.29 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 91.24 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 91.21 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.04 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 91.02 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 91.02 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 91.01 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.9 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.87 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.83 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 90.8 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 90.6 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.55 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.49 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 90.13 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 90.11 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 90.08 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 90.08 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 89.99 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 89.91 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 89.91 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 89.84 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 89.8 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 89.8 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 89.68 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 89.57 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.52 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.41 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 89.33 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 89.29 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 89.18 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 88.92 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 88.72 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 88.67 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.67 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 88.58 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 88.39 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 88.04 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.82 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 87.8 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 87.66 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 87.64 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 87.61 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 87.33 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 87.29 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 87.16 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 86.97 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 86.43 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 86.36 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 85.99 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 85.96 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.79 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 85.67 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 85.61 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 85.57 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 85.38 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=313.08 Aligned_cols=184 Identities=22% Similarity=0.218 Sum_probs=162.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+||+||++|||||++|||+++|++|+++ |++|++++|++++++++.++++..
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999 999999999999999988888653
Q ss_pred -----------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 -----------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 -----------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+ ..+.+.++|++++++|+.|+|+++|+++|+|++ +|+|||+||.++. +.+..
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~------- 154 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAG------- 154 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSC-------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCC-------
Confidence 1 112345899999999999999999999999965 5899999999984 33332
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
.+|++||+|+.+|||+||.||+++ |||||+|+||+|+|+|.....
T Consensus 155 ------------------------------~~Y~asKaal~~ltr~lA~ela~~----gIrVN~V~PG~i~T~~~~~~~~ 200 (254)
T 4fn4_A 155 ------------------------------APYTVAKHGLIGLTRSIAAHYGDQ----GIRAVAVLPGTVKTNIGLGSSK 200 (254)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSSCTTSCSS
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEEeCCCCCcccccccC
Confidence 789999999999999999999998 999999999999999865432
Q ss_pred ------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 ------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.++|||+|+.++||+|+.++|+||+.| .+||+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~R~g~pediA~~v~fLaSd~a~~iTG~~i--~VDGG~t~ 253 (254)
T 4fn4_A 201 PSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAV--VVDGGLTV 253 (254)
T ss_dssp CCHHHHHHHHHHHTTCCCCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred CcHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEE--EeCCCccc
Confidence 168999999999999999999999999 88999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=312.51 Aligned_cols=185 Identities=21% Similarity=0.231 Sum_probs=162.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++|+||++|||||++|||+++|++|+++ |++|++++|++++++++.+++.+.
T Consensus 4 ~f~L~gKvalVTGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 4 LFDLTGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999 999999999999998888887653
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
...+.+.++|++++++|+.|+|+++|+++|+|.+ +|+|||+||.++. +.+..
T Consensus 83 ~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~------ 156 (255)
T 4g81_D 83 EGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTV------ 156 (255)
T ss_dssp TTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTC------
T ss_pred HCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCc------
Confidence 1123356999999999999999999999999942 4899999999984 33332
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
..|++||+|+.+|||+||.||+++ |||||+|+||+|+|+|.....
T Consensus 157 -------------------------------~~Y~asKaal~~ltr~lA~ela~~----gIrVN~V~PG~i~T~~~~~~~ 201 (255)
T 4g81_D 157 -------------------------------APYTAAKGGIKMLTCSMAAEWAQF----NIQTNAIGPGYILTDMNTALI 201 (255)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCGGGHHHH
T ss_pred -------------------------------hhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCCCCchhhccc
Confidence 789999999999999999999998 999999999999999875421
Q ss_pred -----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.++|+|+|+.++||+|+.++|+||++| .+||+|+.
T Consensus 202 ~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~iTG~~i--~VDGG~~A 253 (255)
T 4g81_D 202 EDKQFDSWVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQII--YVDGGWLA 253 (255)
T ss_dssp TCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred CCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCCEE--EECCCeEe
Confidence 279999999999999999999999999 88999864
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=310.01 Aligned_cols=185 Identities=21% Similarity=0.253 Sum_probs=156.7
Q ss_pred CCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
.+.++|+||++|||||++|||+++|++|+++ |++|++++|+.+ ++..+++.+.
T Consensus 2 ~n~f~L~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g 78 (247)
T 4hp8_A 2 KNPFSLEGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDA 78 (247)
T ss_dssp -CTTCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTT
T ss_pred cCCcCCCCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhC
Confidence 3457899999999999999999999999999 999999999864 2334444332
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
...+.+.++|++++++|+.|+|+++|+++|+|.+ +|+|||+||..+. +.+..
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~--------- 149 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRV--------- 149 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSC---------
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCC---------
Confidence 1123346899999999999999999999999843 4899999999984 33332
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
.+|++||+|+.+|||+||.||+++ |||||+|+||+|+|+|.+...
T Consensus 150 ----------------------------~~Y~asKaav~~ltr~lA~Ela~~----gIrVNaV~PG~i~T~~~~~~~~~~ 197 (247)
T 4hp8_A 150 ----------------------------PSYTAAKHGVAGLTKLLANEWAAK----GINVNAIAPGYIETNNTEALRADA 197 (247)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSGGGHHHHTSH
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEeeCCCCCcchhhcccCH
Confidence 789999999999999999999998 999999999999999875321
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.++|||+|+.++||+|+.++|+||+.| .+||+|+.
T Consensus 198 ~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~i--~VDGG~~A 246 (247)
T 4hp8_A 198 ARNKAILERIPAGRWGHSEDIAGAAVFLSSAAADYVHGAIL--NVDGGWLA 246 (247)
T ss_dssp HHHHHHHTTCTTSSCBCTHHHHHHHHHHTSGGGTTCCSCEE--EESTTGGG
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeE--EECccccc
Confidence 279999999999999999999999999 88999864
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=313.58 Aligned_cols=186 Identities=22% Similarity=0.239 Sum_probs=158.9
Q ss_pred CCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
+|+.+|+||+||||||++|||+++|++|+++ |++|++++|++++++++++++...
T Consensus 22 ~Ms~rL~gKvalVTGas~GIG~aiA~~la~~-Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 22 SMTQRLNAKIAVITGATSGIGLAAAKRFVAE-GARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp ---CTTTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcchhCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 3455689999999999999999999999999 999999999999988888877543
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
...+.+.++|+.++++|+.|+|+++|+++|+|+++|+|||++|.++. +.+..
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~---------- 170 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAF---------- 170 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTC----------
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCc----------
Confidence 22344679999999999999999999999999999999999999884 33332
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
.+|++||+|+.+|||+||.||+++ |||||+|+||+|+|++.....
T Consensus 171 ---------------------------~~Y~asKaav~~ltr~lA~Ela~~----gIrVN~V~PG~i~T~~~~~~~~~~~ 219 (273)
T 4fgs_A 171 ---------------------------SVYAASKAALRSFARNWILDLKDR----GIRINTLSPGPTETTGLVELAGKDP 219 (273)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHTTTS----CEEEEEEEECSBCC---------CH
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCCCChhHHHhhccCc
Confidence 789999999999999999999988 999999999999999865432
Q ss_pred ------------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.++|||+|+.++||+|+.++|+||++| .+||+++
T Consensus 220 ~~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLaSd~a~~iTG~~i--~VDGG~s 271 (273)
T 4fgs_A 220 VQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAEL--FVDGGSA 271 (273)
T ss_dssp HHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeE--eECcChh
Confidence 268999999999999999999999999 7888874
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=304.99 Aligned_cols=185 Identities=22% Similarity=0.193 Sum_probs=157.1
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|+++|+||++|||||++|||+++|++|+++ |++|++++|+.++.+.. +++.+.
T Consensus 1 M~~~L~gKvalVTGas~GIG~aia~~la~~-Ga~Vv~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 1 MDLNLQDKVVIVTGGASGIGGAISMRLAEE-RAIPVVFARHAPDGAFL-DALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCCHHHH-HHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCcccHHHH-HHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 568899999999999999999999999999 99999999987764432 222221
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCc-cccccchHHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAG-HLSQITNLELKKRL 294 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag-~~~~~~~~~~~~~~ 294 (484)
...+.+.++|+..+++|+.|+|+++|+++|+|++ +|+|||+||.++ .+.+..
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~-------- 150 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGNT-------- 150 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSSC--------
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCCc--------
Confidence 1223456899999999999999999999999965 699999999998 333332
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
.+|++||+|+.+|||++|.||+++ |||||+|+||+|+|+|.+..
T Consensus 151 -----------------------------~~Y~asKaav~~ltr~lA~ela~~----gIrVN~V~PG~i~T~~~~~~~~~ 197 (258)
T 4gkb_A 151 -----------------------------SGYCASKGAQLALTREWAVALREH----GVRVNAVIPAEVMTPLYRNWIAT 197 (258)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCCSCC------
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCCCCChhHhhhhhc
Confidence 789999999999999999999998 99999999999999987542
Q ss_pred -------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+.++|||+|+.++||+|+.++|+||++| .+||+|+.
T Consensus 198 ~~~~~~~~~~~~~~~plg~R~g~peeiA~~v~fLaS~~a~~iTG~~i--~VDGG~T~ 252 (258)
T 4gkb_A 198 FEDPEAKLAEIAAKVPLGRRFTTPDEIADTAVFLLSPRASHTTGEWL--FVDGGYTH 252 (258)
T ss_dssp -----CHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTT
T ss_pred ccChHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCCeE--EECCCcch
Confidence 1268999999999999999999999999 88999864
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=296.24 Aligned_cols=182 Identities=19% Similarity=0.195 Sum_probs=150.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH-----------------HHHHHHhc------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE-----------------AVQVLKDR------------ 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~-----------------~~~~l~~~------------ 234 (484)
++||++|||||++|||+++|++|+++ |++|++++|+++.+++ .++++-+.
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~-Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG 87 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAEL-GAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG 87 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 58999999999999999999999999 9999999997654321 11221111
Q ss_pred ---CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccc
Q psy8786 235 ---ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 ---~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
.....+.++|++++++|+.|+|+++|+++|+|++ +|+|||+||.++. +.+..
T Consensus 88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~----------------------- 144 (242)
T 4b79_A 88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADR----------------------- 144 (242)
T ss_dssp CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSSC-----------------------
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCCC-----------------------
Confidence 1122345899999999999999999999999965 6999999999984 33332
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC----------------
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN---------------- 373 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~---------------- 373 (484)
.+|++||+|+.+|||+||.||+++ |||||+|+||+|+|||......
T Consensus 145 --------------~~Y~asKaav~~ltr~lA~Ela~~----gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR 206 (242)
T 4b79_A 145 --------------PAYSASKGAIVQLTRSLACEYAAE----RIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLAR 206 (242)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCS
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCC
Confidence 789999999999999999999998 9999999999999999765422
Q ss_pred -CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 -VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 -~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
++|+|+|+.++||+|+.++|+||++| .+||+|..
T Consensus 207 ~g~peeiA~~v~fLaSd~a~~iTG~~l--~VDGG~la 241 (242)
T 4b79_A 207 WGEAPEVASAAAFLCGPGASFVTGAVL--AVDGGYLC 241 (242)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTGGG
T ss_pred CcCHHHHHHHHHHHhCchhcCccCceE--EECccHhh
Confidence 68999999999999999999999999 88999853
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=293.90 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=160.9
Q ss_pred CCCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 182 VDPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
++|+||++|||||++ |||+++|++|+++ |++|++++|+++.++++.+++++.
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~-Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQL-GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 678999999999765 9999999999999 999999999998888777766542
Q ss_pred --------------CC----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHH
Q psy8786 235 --------------AS----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLE 289 (484)
Q Consensus 235 --------------~~----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~ 289 (484)
+. .+...++|+..+++|+.+++.+++++.++++++|+|||+||.++. +.+..
T Consensus 81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~--- 157 (256)
T 4fs3_A 81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNY--- 157 (256)
T ss_dssp HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTT---
T ss_pred HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccc---
Confidence 00 122347899999999999999999999999989999999999884 33332
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
..|++||+|+++|||+||.||+++ |||||+|+||+|+|++.+
T Consensus 158 ----------------------------------~~Y~asKaal~~ltr~lA~Ela~~----gIrVN~V~PG~i~T~~~~ 199 (256)
T 4fs3_A 158 ----------------------------------NVMGVAKASLEANVKYLALDLGPD----NIRVNAISAGPIRTLSAK 199 (256)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCSGGGT
T ss_pred ----------------------------------hhhHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecCCCCChhhh
Confidence 789999999999999999999998 999999999999999987
Q ss_pred CCC-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 370 FMG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 370 ~~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
... .++|||+|+.++||+|+.++|+||++| .+||+|++
T Consensus 200 ~~~~~~~~~~~~~~~~Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i--~VDGG~~a 254 (256)
T 4fs3_A 200 GVGGFNTILKEIKERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENI--HVDSGFHA 254 (256)
T ss_dssp TCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCEE--EECcCHHh
Confidence 543 279999999999999999999999999 88999864
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=292.76 Aligned_cols=188 Identities=17% Similarity=0.150 Sum_probs=154.9
Q ss_pred CCCC-CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----------------HHHHHHHHHhc-----
Q psy8786 178 VNGS-VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----------------GAEAVQVLKDR----- 234 (484)
Q Consensus 178 ~~~~-~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----------------~~~~~~~l~~~----- 234 (484)
|.|+ ++|+||++|||||++|||+++|++|+++ |++|++++|+.++ .+++++++.+.
T Consensus 2 Mm~dl~~L~GK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 80 (261)
T 4h15_A 2 MMIEFLNLRGKRALITAGTKGAGAATVSLFLEL-GAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVD 80 (261)
T ss_dssp CCCCCCCCTTCEEEESCCSSHHHHHHHHHHHHT-TCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCS
T ss_pred cchhccCCCCCEEEEeccCcHHHHHHHHHHHHc-CCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3444 5899999999999999999999999999 9999999996432 23334443332
Q ss_pred ------C--------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 ------A--------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ------~--------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+ ....+.++|+..+++|+.|+++++|+++|+|++ +|+|||++|..+. +.+..
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~----------- 149 (261)
T 4h15_A 81 VIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPES----------- 149 (261)
T ss_dssp EEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTT-----------
T ss_pred EEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCc-----------
Confidence 1 012245899999999999999999999999965 5899999999883 33321
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|+.+|+|+||.||+++ |||||+|+||+|+|++....
T Consensus 150 -------------------------~~~Y~asKaal~~lt~~lA~Ela~~----gIrVN~V~PG~i~T~~~~~~~~~~~~ 200 (261)
T 4h15_A 150 -------------------------TTAYAAAKAALSTYSKAMSKEVSPK----GVRVVRVSPGWIETEASVRLAERLAK 200 (261)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCHHHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEeCCCcCCcchhhhhHHHHH
Confidence 2789999999999999999999998 99999999999999975321
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+.++|||+|+.++||+|+.++|+||+.| .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i--~VDGG~v 258 (261)
T 4h15_A 201 QAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEY--TIDGGTV 258 (261)
T ss_dssp HTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTCS
T ss_pred hhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEE--EECCcCc
Confidence 1268999999999999999999999999 7888873
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=281.57 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=147.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+||||||++|||+++|++|+++ |++|++++|+++.+++..++....
T Consensus 3 K~vlVTGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN 81 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEA-GDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN 81 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999999999 999999999987766554432211
Q ss_pred --------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccc
Q psy8786 235 --------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 --------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
...+.+.++|+.++++|+.|+|+++|++.|+|++ +|+|||++|.++. +.+..
T Consensus 82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~~~------------------ 143 (247)
T 3ged_A 82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDS------------------ 143 (247)
T ss_dssp CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCTTC------------------
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCCCC------------------
Confidence 1123356899999999999999999999999965 5999999999884 33332
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----------C
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-----------N 373 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-----------~ 373 (484)
.+|++||+|+.+|||+||.||++ |||||+|+||+|+|++..... .
T Consensus 144 -------------------~~Y~asKaal~~ltk~lA~ela~-----~IrVN~I~PG~i~t~~~~~~~~~~~~~~Pl~R~ 199 (247)
T 3ged_A 144 -------------------EAYASAKGGIVALTHALAMSLGP-----DVLVNCIAPGWINVTEQQEFTQEDCAAIPAGKV 199 (247)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHTT-----TSEEEEEEECSBCCCC---CCHHHHHTSTTSSC
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEecCcCCCCCcHHHHHHHHhcCCCCCC
Confidence 78999999999999999999873 799999999999999876543 2
Q ss_pred CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 ~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
++|+|+|++++||+| ++|+||++| .+||+++.
T Consensus 200 g~pediA~~v~fL~s--~~~iTG~~i--~VDGG~s~ 231 (247)
T 3ged_A 200 GTPKDISNMVLFLCQ--QDFITGETI--IVDGGMSK 231 (247)
T ss_dssp BCHHHHHHHHHHHHH--CSSCCSCEE--EESTTGGG
T ss_pred cCHHHHHHHHHHHHh--CCCCCCCeE--EECcCHHH
Confidence 799999999999998 479999999 88999865
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-32 Score=262.68 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=157.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 4 FMNLEGKVALVTGASRGIGKAIAELLAER-GAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp TTCCTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999 999999999988777666655432
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
+ ....+.++|+..+++|+.|+++++++++|+|++ .|+||++||.++. +.+.
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 151 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAG----------- 151 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCC-----------
Confidence 1 012256899999999999999999999999854 5899999998873 3222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.+...
T Consensus 152 --------------------------~~~Y~asK~a~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~ 201 (248)
T 3op4_A 152 --------------------------QANYAAAKAGVIGFTKSMAREVASR----GVTVNTVAPGFIETDMTKALNDEQR 201 (248)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBSSTTTTTSCHHHH
T ss_pred --------------------------ChHHHHHHHHHHHHHHHHHHHHHHh----CeEEEEEeeCCCCCchhhhcCHHHH
Confidence 2789999999999999999999988 999999999999999976532
Q ss_pred -----------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+.++||+.+ .+||++.
T Consensus 202 ~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i--~vdgG~~ 246 (248)
T 3op4_A 202 TATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETL--HVNGGMY 246 (248)
T ss_dssp HHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSS
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEE--EECCCee
Confidence 268999999999999999999999999 6787764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=261.07 Aligned_cols=183 Identities=20% Similarity=0.228 Sum_probs=156.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEG-GAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 689999999999999999999999999 899999999988877766655322
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhcccc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~ 300 (484)
+ ....+.++|+..+++|+.|+++++++++|+|+++|+||++||.++.. .+.
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------------- 148 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPG--------------- 148 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTT---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCC---------------
Confidence 1 11225689999999999999999999999998889999999998843 222
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------- 372 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------- 372 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.....
T Consensus 149 ----------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~~~~~ 202 (255)
T 4eso_A 149 ----------------------MSVYSASKAALVSFASVLAAELLPR----GIRVNSVSPGFIDTPTKGVAGITEAERAE 202 (255)
T ss_dssp ----------------------BHHHHHHHHHHHHHHHHHHHHTGGG----TCEEEEEEECSBCCSSTTCTTSCHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEecCcccCcccccccCChhhHHH
Confidence 2789999999999999999999988 999999999999999864311
Q ss_pred -------------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
..+|+|+|+.++||+++ ++|+||+.+ .+||++...
T Consensus 203 ~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~itG~~i--~vdGG~~~~ 250 (255)
T 4eso_A 203 FKTLGDNITPMKRNGTADEVARAVLFLAFE-ATFTTGAKL--AVDGGLGQK 250 (255)
T ss_dssp HHHHHHHHSTTSSCBCHHHHHHHHHHHHHT-CTTCCSCEE--EESTTTTTT
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHcCc-CcCccCCEE--EECCCcccc
Confidence 15899999999999998 999999999 788887543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=262.58 Aligned_cols=186 Identities=22% Similarity=0.174 Sum_probs=154.0
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC----------------chhHHHHHHHHHhc---------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD----------------KKKGAEAVQVLKDR--------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~----------------~~~~~~~~~~l~~~--------- 234 (484)
|..+++||++|||||++|||+++|++|+++ |++|++++|+ .+++++..+++...
T Consensus 5 m~~~l~~k~~lVTGas~gIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (286)
T 3uve_A 5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQE-GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEV 83 (286)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCcccCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEc
Confidence 346789999999999999999999999999 8999999887 44555544444321
Q ss_pred -----------------------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEE
Q psy8786 235 -----------------------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNL 275 (484)
Q Consensus 235 -----------------------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~i 275 (484)
+ ....+.++|+.++++|+.|+++++++++|+|++ +|+||++
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~i 163 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILT 163 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 111246899999999999999999999999965 4799999
Q ss_pred eCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeE
Q psy8786 276 SSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 354 (484)
Q Consensus 276 SS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIr 354 (484)
||..+. ..+. ...|++||+|+++|+++++.|++++ |||
T Consensus 164 sS~~~~~~~~~-------------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gI~ 202 (286)
T 3uve_A 164 SSVGGLKAYPH-------------------------------------TGHYVAAKHGVVGLMRAFGVELGQH----MIR 202 (286)
T ss_dssp CCGGGTSCCTT-------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEE
T ss_pred CchhhccCCCC-------------------------------------ccHHHHHHHHHHHHHHHHHHHhccc----CeE
Confidence 999884 3222 2789999999999999999999988 999
Q ss_pred EEEEeCCcccCCCccC------------------------------CCCCCHHhHHHHHHHHHhhhcccccccccccccc
Q psy8786 355 INAVHPGYVATNMSSF------------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIP 404 (484)
Q Consensus 355 VNaV~PG~V~T~m~~~------------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~ 404 (484)
||+|+||+|+|+|... .+..+|+|+|++++||+++.++|+||+.| .+|
T Consensus 203 vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~p~dvA~~v~fL~s~~a~~itG~~i--~vd 280 (286)
T 3uve_A 203 VNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPWVEPIDISNAVLFFASDEARYITGVTL--PID 280 (286)
T ss_dssp EEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EES
T ss_pred EEEEecCcccCCcccccchhhhccccccccchhhHHHHHHhhhccCCCcCCHHHHHHHHHHHcCccccCCcCCEE--eEC
Confidence 9999999999998742 11258999999999999999999999999 788
Q ss_pred ceeec
Q psy8786 405 AIYTV 409 (484)
Q Consensus 405 g~~~~ 409 (484)
|++..
T Consensus 281 GG~~l 285 (286)
T 3uve_A 281 AGSCL 285 (286)
T ss_dssp TTGGG
T ss_pred Ccccc
Confidence 88743
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=263.57 Aligned_cols=184 Identities=21% Similarity=0.127 Sum_probs=153.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC------------chhHHHHHHHHHhc--------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD------------KKKGAEAVQVLKDR-------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~------------~~~~~~~~~~l~~~-------------- 234 (484)
..+++||++|||||++|||+++|++|+++ |++|++++|+ .+++++..+++...
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLARE-GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDF 101 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 45689999999999999999999999999 9999999987 45555554444321
Q ss_pred ------------------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCc
Q psy8786 235 ------------------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAG 280 (484)
Q Consensus 235 ------------------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag 280 (484)
+ ....+.++|+.++++|+.|++.++++++|.|.+ .|+||++||.++
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~ 181 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhh
Confidence 1 122356899999999999999999999999853 479999999988
Q ss_pred c-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEe
Q psy8786 281 H-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH 359 (484)
Q Consensus 281 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~ 359 (484)
. +.+. ...|++||+|+++|+++++.|++++ ||+||+|+
T Consensus 182 ~~~~~~-------------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~ 220 (299)
T 3t7c_A 182 LRGAEN-------------------------------------IGNYIASKHGLHGLMRTMALELGPR----NIRVNIVC 220 (299)
T ss_dssp TSCCTT-------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEE
T ss_pred ccCCCC-------------------------------------cchHHHHHHHHHHHHHHHHHHhccc----CcEEEEEe
Confidence 4 3222 2789999999999999999999988 99999999
Q ss_pred CCcccCCCccC------------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 360 PGYVATNMSSF------------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 360 PG~V~T~m~~~------------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
||+|+|++... .+..+|+|+|+.++||+++.++|+||+.| .+||++.
T Consensus 221 PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~fL~s~~a~~itG~~i--~vdGG~~ 297 (299)
T 3t7c_A 221 PSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYVEPADISNAILFLVSDDARYITGVSL--PVDGGAL 297 (299)
T ss_dssp ESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred cCCccCccccccchhhhhhhhhccchhhHHHHHhhhhcccCcCCCCHHHHHHHHHHHhCcccccCcCCEE--eeCCCcc
Confidence 99999998642 11258999999999999999999999999 7888874
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=259.47 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=157.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEA-GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999999 899999999988887777666441
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
.....+.++|+..+++|+.|++.++++++|+|++ .|+||++||..+. +.+.
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 155 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPH------- 155 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTT-------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCC-------
Confidence 1123456899999999999999999999999975 4899999999884 3222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-- 370 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-- 370 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++...
T Consensus 156 ------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~ 201 (265)
T 3lf2_A 156 ------------------------------MVATSAARAGVKNLVRSMAFEFAPK----GVRVNGILIGLVESGQWRRRF 201 (265)
T ss_dssp ------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHH
T ss_pred ------------------------------chhhHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeCcCcCchhhhhh
Confidence 2789999999999999999999988 9999999999999987432
Q ss_pred ----------------------C---CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 ----------------------M---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 ----------------------~---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. +..+|+|+|+.++||+++.++|+||+.| .+||++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i--~vdGG~~~ 263 (265)
T 3lf2_A 202 EAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHI--DVSGGLSR 263 (265)
T ss_dssp TC------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEE--EESSSCCC
T ss_pred hhhhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEE--EECCCCcC
Confidence 1 1258999999999999999999999999 78888753
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=260.79 Aligned_cols=187 Identities=22% Similarity=0.132 Sum_probs=153.7
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-------------CchhHHHHHHHHHhc------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-------------DKKKGAEAVQVLKDR------------ 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-------------~~~~~~~~~~~l~~~------------ 234 (484)
|..+++||++|||||++|||+++|++|+++ |++|++++| +.+++++..+++...
T Consensus 5 m~~~l~~k~~lVTGas~GIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 83 (277)
T 3tsc_A 5 MAGKLEGRVAFITGAARGQGRAHAVRMAAE-GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTR 83 (277)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 345789999999999999999999999999 899999998 455555554444321
Q ss_pred --------------------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCC
Q psy8786 235 --------------------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSA 279 (484)
Q Consensus 235 --------------------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~a 279 (484)
+ ....+.++|+.++++|+.|++.++++++|.|++ +|+||++||.+
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~ 163 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA 163 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHh
Confidence 1 012356899999999999999999999999865 47999999998
Q ss_pred ccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEe
Q psy8786 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH 359 (484)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~ 359 (484)
+...... ...|++||+|+++|+++++.|++++ |||||+|+
T Consensus 164 ~~~~~~~------------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~ 203 (277)
T 3tsc_A 164 GMKMQPF------------------------------------MIHYTASKHAVTGLARAFAAELGKH----SIRVNSVH 203 (277)
T ss_dssp GTSCCSS------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEE
T ss_pred hCCCCCC------------------------------------chhhHHHHHHHHHHHHHHHHHhCcc----CeEEEEEE
Confidence 8432211 2789999999999999999999988 99999999
Q ss_pred CCcccCCCccC-------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 360 PGYVATNMSSF-------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 360 PG~V~T~m~~~-------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
||+|+|++... ....+|+|+|+.++||+++.++++||+.| .+||++..
T Consensus 204 PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 276 (277)
T 3tsc_A 204 PGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQI--PVDQGSTQ 276 (277)
T ss_dssp ESSBSSGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred eCCCcCCcccchhhhhhhhcccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEE--eeCCCccc
Confidence 99999998542 01268999999999999999999999999 78888753
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=259.03 Aligned_cols=186 Identities=19% Similarity=0.213 Sum_probs=158.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKA-GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALD 85 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 899999999988877766665431
Q ss_pred ------------C-----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ------------A-----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ------------~-----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++|+.++++|+.|++.++++++|+|++ .|+||++||.++.....
T Consensus 86 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 155 (256)
T 3gaf_A 86 QFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNV---------- 155 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCT----------
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCC----------
Confidence 1 013456899999999999999999999999965 47999999998843221
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 156 --------------------------~~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~ 205 (256)
T 3gaf_A 156 --------------------------RMASYGSSKAAVNHLTRNIAFDVGPM----GIRVNAIAPGAIKTDALATVLTPE 205 (256)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCHHHHHHCCHH
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEEEccccCchhhhccCHH
Confidence 12789999999999999999999988 99999999999999975421
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 206 ~~~~~~~~~p~~r~~~~~dva~~~~~L~s~~~~~itG~~i--~vdgG~~~ 253 (256)
T 3gaf_A 206 IERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVL--TVSGGGVQ 253 (256)
T ss_dssp HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSCC
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcccCccCCEE--EECCCccc
Confidence 1268999999999999999999999999 77887754
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=258.30 Aligned_cols=186 Identities=21% Similarity=0.156 Sum_probs=158.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARA-GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVE 84 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 899999999988887776666431
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
.....+.++|+.++++|+.|+++++++++|.|++ .++||++||..+. ....
T Consensus 85 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 156 (262)
T 3pk0_A 85 EFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYP-------- 156 (262)
T ss_dssp HHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCT--------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCC--------
Confidence 1123356899999999999999999999999964 4899999998873 2211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|.|++.....
T Consensus 157 ----------------------------~~~~Y~asK~a~~~l~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~ 204 (262)
T 3pk0_A 157 ----------------------------GWSHYGATKAAQLGFMRTAAIELAPH----KITVNAIMPGNIMTEGLLENGE 204 (262)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCCHHHHTTCH
T ss_pred ----------------------------CChhhHHHHHHHHHHHHHHHHHHHhh----CcEEEEEEeCcCcCccccccCH
Confidence 12789999999999999999999988 999999999999999754321
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
..+|+|+|+.+.||+++.++++||+.+ .+||++..+
T Consensus 205 ~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i--~vdGG~~~~ 254 (262)
T 3pk0_A 205 EYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAI--AVDGGQVLP 254 (262)
T ss_dssp HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTCC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEE--EECCCeecC
Confidence 268999999999999999999999999 788888654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=260.99 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=157.3
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (267)
T 3t4x_A 4 MHMQLKGKTALVTGSTAGIGKAIATSLVAE-GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK 82 (267)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh
Confidence 457789999999999999999999999999 899999999998887776665431
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .|+||++||.++.....
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 152 (267)
T 3t4x_A 83 YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQ---------- 152 (267)
T ss_dssp CCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCC----------
Confidence 1 012245899999999999999999999999964 48999999998843221
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----- 370 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----- 370 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++...
T Consensus 153 --------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~~ 202 (267)
T 3t4x_A 153 --------------------------EMAHYSATKTMQLSLSRSLAELTTGT----NVTVNTIMPGSTLTEGVETMLNSL 202 (267)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHTTTS----EEEEEEEEECCBCCHHHHHHHHHS
T ss_pred --------------------------cchHHHHHHHHHHHHHHHHHHHhCCC----CeEEEEEeCCeecCccHHHHHhhc
Confidence 12789999999999999999999877 9999999999999985321
Q ss_pred -------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 -------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 -------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+..+|+|+|+.++||+++.++++||+.+ .+||++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i--~vdGG~~~ 264 (267)
T 3t4x_A 203 YPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSAL--RIDGGLVR 264 (267)
T ss_dssp STTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEE--EESTTCSC
T ss_pred CcccCCCHHHHHHHHhhccCCcccccCccCHHHHHHHHHHHcCccccCccCCeE--EECCCccc
Confidence 12368999999999999999999999999 78888754
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=260.17 Aligned_cols=186 Identities=19% Similarity=0.206 Sum_probs=154.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAAD-GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999 899999999988887777666431
Q ss_pred ------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcccc-ccchHHHHH
Q psy8786 235 ------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS-QITNLELKK 292 (484)
Q Consensus 235 ------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~-~~~~~~~~~ 292 (484)
+ ....+.++|+..+++|+.|++.++++++|.|++ .|+||++||.++... +..
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~------ 175 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTP------ 175 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCST------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCC------
Confidence 1 113346899999999999999999999999965 489999999987421 111
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 176 -----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~ 222 (283)
T 3v8b_A 176 -----------------------------GATAYTATKAAQVAIVQQLALELGKH----HIRVNAVCPGAIETNISDNTK 222 (283)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHHHHTTTT----TEEEEEEEECSBSSCTTCCTT
T ss_pred -----------------------------CchHHHHHHHHHHHHHHHHHHHhCcc----CcEEEEEEeCCCcCCcccccc
Confidence 12789999999999999999999887 99999999999999986532
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.++++||+.| .+||++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i--~vdGG~~ 280 (283)
T 3v8b_A 223 LRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPV--WIDGGQG 280 (283)
T ss_dssp BCCHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTHH
T ss_pred cccchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEE--EECcCcc
Confidence 1258999999999999999999999999 7788764
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=258.73 Aligned_cols=185 Identities=16% Similarity=0.121 Sum_probs=151.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc--hhHHHHHHHHHhc------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK--KKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~--~~~~~~~~~l~~~------------------------ 234 (484)
.++|+||++|||||++|||+++|++|+++ |++|++++|+. +..++..+.++..
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYARE-GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999 89999998873 2333333332211
Q ss_pred --------------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 --------------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 --------------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. ...+.++|+..+++|+.|+++++++++|.|+++|+||++||.++......
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~------- 195 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPH------- 195 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTT-------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCC-------
Confidence 11 11245899999999999999999999999988899999999988432211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 196 -----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~~ 242 (294)
T 3r3s_A 196 -----------------------------LLDYAATKAAILNYSRGLAKQVAEK----GIRVNIVAPGPIWTALQISGGQ 242 (294)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSHHHHTTTS
T ss_pred -----------------------------chHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCcCccccccccCC
Confidence 2789999999999999999999988 99999999999999872110
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.++++||+++ .+||++.
T Consensus 243 ~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~~ 292 (294)
T 3r3s_A 243 TQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVH--GVCGGEH 292 (294)
T ss_dssp CGGGSTTTTTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESTTCC
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE--EECCCcc
Confidence 1268999999999999999999999999 7788764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-31 Score=258.32 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=155.1
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~------------------------ 234 (484)
..++++||++|||||++|||+++|++|+++ |++|++++++ .+..++..+++...
T Consensus 25 ~~~~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (271)
T 3v2g_A 25 TSISLAGKTAFVTGGSRGIGAAIAKRLALE-GAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRET 103 (271)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 346789999999999999999999999999 8999988665 45555555554321
Q ss_pred --------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 --------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 --------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ....+.++|+..+++|+.|++.++++++|.|+++|+||++||..+...+..
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~-------- 175 (271)
T 3v2g_A 104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWP-------- 175 (271)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCST--------
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCC--------
Confidence 1 112356899999999999999999999999988899999999776322111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.....
T Consensus 176 ---------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gIrvn~v~PG~v~T~~~~~~~~~ 224 (271)
T 3v2g_A 176 ---------------------------GISLYSASKAALAGLTKGLARDLGPR----GITVNIVHPGSTDTDMNPADGDH 224 (271)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSSSSCSSCSS
T ss_pred ---------------------------CchHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEecCCCcCCcccccchh
Confidence 12789999999999999999999988 999999999999999975432
Q ss_pred ------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+.++||+.| .+||++.
T Consensus 225 ~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i--~vdGG~~ 270 (271)
T 3v2g_A 225 AEAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASL--TIDGGAN 270 (271)
T ss_dssp HHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCccCCEE--EeCcCcc
Confidence 268999999999999999999999999 7788764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=261.29 Aligned_cols=185 Identities=20% Similarity=0.242 Sum_probs=156.4
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|..+++||++|||||++|||+++|++|+++ |++|++++|+++.+++..+++...
T Consensus 22 m~~~l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (270)
T 3ftp_A 22 MDKTLDKQVAIVTGASRGIGRAIALELARR-GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTL 100 (270)
T ss_dssp -CCTTTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 345689999999999999999999999999 899999999988777666555321
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
.......++|+..+++|+.|++.++++++|.|++ +|+||++||.++. ..+.
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 173 (270)
T 3ftp_A 101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPG------- 173 (270)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT-------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCC-------
Confidence 1123356899999999999999999999999854 5899999998873 3222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 174 ------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~ 219 (270)
T 3ftp_A 174 ------------------------------QVNYAAAKAGVAGMTRALAREIGSR----GITVNCVAPGFIDTDMTKGLP 219 (270)
T ss_dssp ------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSHHHHHSC
T ss_pred ------------------------------chhHHHHHHHHHHHHHHHHHHHhhh----CeEEEEEEeCCCcCcchhhcC
Confidence 2789999999999999999999988 999999999999999864321
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 220 ~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~ 268 (270)
T 3ftp_A 220 QEQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTL--HVNGGMF 268 (270)
T ss_dssp HHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSS
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCCcCCccCcEE--EECCCcc
Confidence 258999999999999999999999999 6788764
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=260.24 Aligned_cols=185 Identities=19% Similarity=0.201 Sum_probs=157.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAA-GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 899999999988887776666431
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +|+||++||.++.....
T Consensus 95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 166 (266)
T 4egf_A 95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLP-------- 166 (266)
T ss_dssp HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT--------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCC--------
Confidence 1 112345889999999999999999999999965 47999999998743211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 167 ----------------------------~~~~Y~asK~a~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~ 214 (266)
T 4egf_A 167 ----------------------------DHYAYCTSKAGLVMATKVLARELGPH----GIRANSVCPTVVLTEMGQRVWG 214 (266)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCBCSHHHHHHTC
T ss_pred ----------------------------CChHHHHHHHHHHHHHHHHHHHHhhh----CeEEEEEEeCCCcCchhhhhcc
Confidence 12789999999999999999999988 99999999999999975422
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.++++||+.| .+||++..
T Consensus 215 ~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i--~vdGG~~~ 265 (266)
T 4egf_A 215 DEAKSAPMIARIPLGRFAVPHEVSDAVVWLASDAASMINGVDI--PVDGGYTM 265 (266)
T ss_dssp SHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred ChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCcEE--EECCCccC
Confidence 1268999999999999999999999999 78888753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=257.75 Aligned_cols=183 Identities=23% Similarity=0.175 Sum_probs=153.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-------------CchhHHHHHHHHHhc--------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-------------DKKKGAEAVQVLKDR-------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-------------~~~~~~~~~~~l~~~-------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++| +.+++++..+++...
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAE-GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 5689999999999999999999999999 899999998 555555555544321
Q ss_pred ------------------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc
Q psy8786 235 ------------------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH 281 (484)
Q Consensus 235 ------------------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~ 281 (484)
+ ......++|+.++++|+.|++.++++++|+|++ +|+||++||.++.
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 169 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL 169 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence 1 112356899999999999999999999999864 5899999999884
Q ss_pred -ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeC
Q psy8786 282 -LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHP 360 (484)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~P 360 (484)
..+. ...|++||+|+++|+++++.|++++ ||+||+|+|
T Consensus 170 ~~~~~-------------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~P 208 (280)
T 3pgx_A 170 KATPG-------------------------------------NGHYSASKHGLTALTNTLAIELGEY----GIRVNSIHP 208 (280)
T ss_dssp SCCTT-------------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEE
T ss_pred cCCCC-------------------------------------chhHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEee
Confidence 3222 2789999999999999999999988 999999999
Q ss_pred CcccCCCccC------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 361 GYVATNMSSF------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 361 G~V~T~m~~~------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
|+|+|++... .+..+|+|+|+.++||+++.++++||+.+ .+||++.
T Consensus 209 G~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~~ 278 (280)
T 3pgx_A 209 YSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQI--PVDKGAL 278 (280)
T ss_dssp CSBCSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEE--EESTTGG
T ss_pred CcccCcccchhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEE--EECCCcc
Confidence 9999998642 01258999999999999999999999999 7788764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=260.07 Aligned_cols=187 Identities=20% Similarity=0.229 Sum_probs=158.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 28 ~~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 28 FDLSGKRALITGASTGIGKKVALAYAEA-GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp GCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 899999999988877766665431
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +++||++||..+......
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~-------- 178 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP-------- 178 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCS--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCC--------
Confidence 1 112246899999999999999999999999865 389999999887432110
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
.+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.+..
T Consensus 179 --------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~----gIrvn~v~PG~v~T~~~~~~~~~ 228 (276)
T 3r1i_A 179 --------------------------QQVSHYCTSKAAVVHLTKAMAVELAPH----QIRVNSVSPGYIRTELVEPLADY 228 (276)
T ss_dssp --------------------------SCCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCSTTTGGGGGG
T ss_pred --------------------------CCcchHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEeeCCCcCCccccchHH
Confidence 012789999999999999999999988 99999999999999987542
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.++++||+.+ .+||++..
T Consensus 229 ~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i--~vdGG~~~ 275 (276)
T 3r1i_A 229 HALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDI--VIDGGYTC 275 (276)
T ss_dssp HHHHGGGSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE--EESTTTTC
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEE--EECcCccC
Confidence 1268999999999999999999999999 78888754
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=256.34 Aligned_cols=182 Identities=19% Similarity=0.166 Sum_probs=154.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAAD-GATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGI 81 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999999 899999999988777665554221
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+ ....+.++|+..+++|+.|++.++++++|+|++ .++||++||..+. +.+.
T Consensus 82 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------ 149 (247)
T 3rwb_A 82 DILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPN------------ 149 (247)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTT------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCC------------
Confidence 1 112345899999999999999999999999965 4799999998873 3222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 150 -------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~~~~ 200 (247)
T 3rwb_A 150 -------------------------MAAYVAAKGGVIGFTRALATELGKY----NITANAVTPGLIESDGVKASPHNEAF 200 (247)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHTSGGGGGH
T ss_pred -------------------------chhhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCcCcCccccccChhHHH
Confidence 2789999999999999999999988 99999999999999875432
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+..+|+|+|+.+.||+++.++|+||+.+ .+||++.
T Consensus 201 ~~~~~~~~~~r~~~pedva~~v~~L~s~~~~~itG~~i--~vdGG~~ 245 (247)
T 3rwb_A 201 GFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQTL--NVDAGMV 245 (247)
T ss_dssp HHHHHHSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSS
T ss_pred HHHhcccccCCCcCHHHHHHHHHHHhCccccCCCCCEE--EECCCcc
Confidence 1268999999999999999999999999 7788764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=255.97 Aligned_cols=185 Identities=22% Similarity=0.239 Sum_probs=154.0
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|..+++||++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (271)
T 3tzq_B 5 MTAELENKVAIITGACGGIGLETSRVLARA-GARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTF 83 (271)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356789999999999999999999999999 899999999987776655544211
Q ss_pred ----------CCC--------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ----------AST--------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ----------~~~--------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+.. ..+.++|+..+++|+.|+++++++++|+|++ .++||++||..+......
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 155 (271)
T 3tzq_B 84 GRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDM-------- 155 (271)
T ss_dssp SCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSS--------
T ss_pred CCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCC--------
Confidence 111 2245899999999999999999999999965 479999999987432211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 156 ----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~ 203 (271)
T 3tzq_B 156 ----------------------------STAYACTKAAIETLTRYVATQYGRH----GVRCNAIAPGLVRTPRLEVGLPQ 203 (271)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCTTTC---CH
T ss_pred ----------------------------ChHHHHHHHHHHHHHHHHHHHHhhc----CEEEEEEEeCCCcCccccccCCH
Confidence 2789999999999999999999988 99999999999999987621
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++
T Consensus 204 ~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~ 250 (271)
T 3tzq_B 204 PIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVI--AADSGL 250 (271)
T ss_dssp HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTT
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCcCCCEE--EECCCc
Confidence 1258999999999999999999999999 677774
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=257.67 Aligned_cols=185 Identities=18% Similarity=0.198 Sum_probs=153.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH-HHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG-AEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~-~~~~~~l~~~------------------------- 234 (484)
..+|+||++|||||++|||+++|++|+++ |++|++++|+.+.. ++..+.++..
T Consensus 42 ~~~l~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKE-GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999 89999999986533 2222222211
Q ss_pred -------------CC--C-----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 -------------AS--T-----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 -------------~~--~-----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+. . ....++|+..+++|+.|++.++++++|+|+++++||++||..+. ..+.
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 192 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNET-------- 192 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTT--------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCC--------
Confidence 11 1 12468999999999999999999999999888999999999874 2222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 193 -----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~ 239 (291)
T 3ijr_A 193 -----------------------------LIDYSATKGAIVAFTRSLSQSLVQK----GIRVNGVAPGPIWTPLIPSSFD 239 (291)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSTHHHHHSC
T ss_pred -----------------------------ChhHHHHHHHHHHHHHHHHHHHhhc----CEEEEEEeeCCCcCCcccccCC
Confidence 2789999999999999999999988 99999999999999985321
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.+
T Consensus 240 ~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 289 (291)
T 3ijr_A 240 EKKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMI--HVNGGVIV 289 (291)
T ss_dssp HHHHHHTTTTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEE--EESSSCCC
T ss_pred HHHHHHHHccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEE--EECCCccc
Confidence 1268999999999999999999999999 78888754
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=257.16 Aligned_cols=183 Identities=17% Similarity=0.197 Sum_probs=151.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQ-GAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999 899999999988777665544221
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
.......++|+..+++|+.|++.++++++|.|++ .|+||++||.++. +.+.
T Consensus 102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~------------ 169 (266)
T 3grp_A 102 IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPG------------ 169 (266)
T ss_dssp CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------C------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCC------------
Confidence 1123345899999999999999999999999854 4899999999884 3222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.....
T Consensus 170 -------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~~~~~~ 220 (266)
T 3grp_A 170 -------------------------QTNYCAAKAGLIGFSKALAQEIASR----NITVNCIAPGFIKSAMTDKLNEKQKE 220 (266)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSHHHHTCCHHHHH
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEeeCcCCCchhhccCHHHHH
Confidence 2789999999999999999999988 999999999999999865432
Q ss_pred ----------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.++++||+.+ .+||++.
T Consensus 221 ~~~~~~p~~r~~~~edvA~~v~~L~s~~~~~itG~~i--~vdGG~~ 264 (266)
T 3grp_A 221 AIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTL--HINGGMA 264 (266)
T ss_dssp HHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC-
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE--EECCCee
Confidence 268999999999999999999999999 7788764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=258.23 Aligned_cols=182 Identities=23% Similarity=0.222 Sum_probs=144.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
+.++||++|||||++|||+++|++|+++ |++|+++ .|+.+..++..+++...
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 8999887 45555555555444321
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+ ......++|+..+++|+.|++.++++++|.|+++|+||++||..+. ..+.
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 171 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPS---------- 171 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTT----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCC----------
Confidence 1 1123458899999999999999999999999888999999998773 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 172 ---------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~~ 220 (267)
T 3u5t_A 172 ---------------------------YGIYAAAKAGVEAMTHVLSKELRGR----DITVNAVAPGPTATDLFLEGKSDE 220 (267)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHTTTS----CCEEEEEEECCBC-----------
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHhhhh----CCEEEEEEECCCcCccccccCCHH
Confidence 2789999999999999999999877 99999999999999986431
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++
T Consensus 221 ~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~ 266 (267)
T 3u5t_A 221 VRDRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVL--RANGGI 266 (267)
T ss_dssp CHHHHHTSSTTCSCBCHHHHHHHHHHHHSTTTTTCCSEEE--EESSSC
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE--EeCCCc
Confidence 1268999999999999999999999999 677775
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=260.53 Aligned_cols=185 Identities=22% Similarity=0.260 Sum_probs=157.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVA-GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQ 100 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999 899999999988887777766432
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .|+||++||.++.....
T Consensus 101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~---------- 170 (271)
T 4ibo_A 101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARA---------- 170 (271)
T ss_dssp TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT----------
T ss_pred CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCC----------
Confidence 1 012356899999999999999999999999865 47999999988742221
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 171 --------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~~ 220 (271)
T 4ibo_A 171 --------------------------TVAPYTVAKGGIKMLTRAMAAEWAQY----GIQANAIGPGYMLTDMNQALIDNP 220 (271)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSGGGHHHHHCH
T ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHHHhhh----CeEEEEEEeccEeCcchhhcccCH
Confidence 12789999999999999999999988 99999999999999986432
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 221 ~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i--~vdGG~~~ 269 (271)
T 4ibo_A 221 EFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYVNGQII--YVDGGMLS 269 (271)
T ss_dssp HHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEE--EECCCeec
Confidence 1268999999999999999999999999 77887643
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=259.22 Aligned_cols=184 Identities=19% Similarity=0.211 Sum_probs=155.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 28 IFGLRGRTALVTGSSRGIGAAIAEGLAGA-GAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp HHCCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 899999999988777666655321
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ....+.++|+.++++|+.|++.++++++|.|++ .|+||++||.++.....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~---------- 176 (275)
T 4imr_A 107 IAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKS---------- 176 (275)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC----------
Confidence 0 012245899999999999999999999999854 58999999988743211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 177 --------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~~ 226 (275)
T 4imr_A 177 --------------------------VVTAYAATKAAQHNLIQSQARDFAGD----NVLLNTLAPGLVDTDRNADRRAQD 226 (275)
T ss_dssp --------------------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESSBCSHHHHHHHHHC
T ss_pred --------------------------CchhhHHHHHHHHHHHHHHHHHhccc----CcEEEEEEeccccCcccccccccC
Confidence 12679999999999999999999988 99999999999999975321
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.++|+||+.| .+||+|
T Consensus 227 ~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i--~vdGG~ 275 (275)
T 4imr_A 227 PEGWDEYVRTLNWMGRAGRPEEMVGAALFLASEACSFMTGETI--FLTGGY 275 (275)
T ss_dssp HHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESSCC
T ss_pred hHHHHHHHhhcCccCCCcCHHHHHHHHHHHcCcccCCCCCCEE--EeCCCC
Confidence 1268999999999999999999999999 677775
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=255.91 Aligned_cols=196 Identities=19% Similarity=0.180 Sum_probs=153.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC------------chhHHHHHHHHHhc---------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD------------KKKGAEAVQVLKDR--------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~------------~~~~~~~~~~l~~~--------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+ .+++++..+++...
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEE-GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHC-CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 4689999999999999999999999999 8999999987 44444433333211
Q ss_pred -----------------------C----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccch
Q psy8786 235 -----------------------A----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN 287 (484)
Q Consensus 235 -----------------------~----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~ 287 (484)
+ ....+.++|+..+++|+.|++.++++++|+|+++++||++||.++.......
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 1 1113468999999999999999999999999888999999998874221100
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...+. ....+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|+|
T Consensus 165 ~~~~~-------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~T~~ 215 (287)
T 3pxx_A 165 PGAGG-------------------------PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQ----SIRANVIHPTNVNTDM 215 (287)
T ss_dssp C------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEESSBSSTT
T ss_pred ccccc-------------------------cCCCccchHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEecCcccccc
Confidence 00000 000012689999999999999999999988 9999999999999998
Q ss_pred ccC------------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 368 SSF------------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 368 ~~~------------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
... .+..+|+|+|++++||+|+.++|+||+.| .+||++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i--~vdGG~~~ 285 (287)
T 3pxx_A 216 LNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQF--KVDAGAML 285 (287)
T ss_dssp TSSHHHHHHHCTTSSSCCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred ccccchhhhhccccccchhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceE--eECchhhh
Confidence 642 11267899999999999999999999999 78888754
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=255.81 Aligned_cols=186 Identities=18% Similarity=0.251 Sum_probs=156.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
+++++||++|||||++|||+++|++|+++ |++|++++|+.+.+++..+++...
T Consensus 22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 22 SMDLNQRVCIVTGGGSGIGRATAELFAKN-GAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999 899999999988776665554221
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.......++|+..+++|+.|++.++++++|.|++ .|+||++||.++.....
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 168 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIA------------ 168 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCT------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCC------------
Confidence 1123456899999999999999999999999976 37999999988743211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------- 370 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------- 370 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 169 ------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~~ 220 (277)
T 4dqx_A 169 ------------------------DRTAYVASKGAISSLTRAMAMDHAKE----GIRVNAVAPGTIDSPYFTKIFAEAKD 220 (277)
T ss_dssp ------------------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHHHTCSC
T ss_pred ------------------------CChhHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCcCcCchhhhhcccccc
Confidence 12789999999999999999999988 9999999999999998211
Q ss_pred --------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 --------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 --------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
....+|+|+|+.++||+++.+++++|+.+ .+||++..
T Consensus 221 ~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 271 (277)
T 4dqx_A 221 PAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSIL--TVDGGSSI 271 (277)
T ss_dssp HHHHHHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESSSSSS
T ss_pred hhHHHHHHHhcCcccCCcCHHHHHHHHHHHhCCccCCCcCCEE--EECCchhh
Confidence 01268999999999999999999999999 78888754
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=254.17 Aligned_cols=185 Identities=24% Similarity=0.239 Sum_probs=152.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC------------chhHHHHHHHHHhc---------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD------------KKKGAEAVQVLKDR--------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~------------~~~~~~~~~~l~~~--------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+ .+.+++..+++...
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 84 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEA-GADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRA 84 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 4689999999999999999999999999 8999999997 33344433333221
Q ss_pred -----------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcccc
Q psy8786 235 -----------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS 283 (484)
Q Consensus 235 -----------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~ 283 (484)
.......++|+.++++|+.|++.++++++|.|++ .|+||++||..+...
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 164 (281)
T 3s55_A 85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSA 164 (281)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCC
Confidence 1123456899999999999999999999999854 489999999987432
Q ss_pred ccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 284 QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
.. +...|++||+|+++|+++++.|++++ |||||+|+||+|
T Consensus 165 ~~------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v 204 (281)
T 3s55_A 165 NF------------------------------------AQASYVSSKWGVIGLTKCAAHDLVGY----GITVNAVAPGNI 204 (281)
T ss_dssp CT------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEECSB
T ss_pred CC------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEecCcc
Confidence 21 12789999999999999999999988 999999999999
Q ss_pred cCCCccC------------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 364 ATNMSSF------------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 364 ~T~m~~~------------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+|++... .+..+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 205 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdgG~~~ 278 (281)
T 3s55_A 205 ETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVL--PIDAGATA 278 (281)
T ss_dssp CSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred cCccccchhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEE--EECCCccc
Confidence 9998642 01258999999999999999999999999 77888754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=256.70 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=157.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~l~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (280)
T 3tox_A 4 SRLEGKIAIVTGASSGIGRAAALLFARE-GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR 82 (280)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999 899999999988887777666321
Q ss_pred -----------CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+.. ..+.++|+.++++|+.|++.++++++|.|++ +|+||++||..+......
T Consensus 83 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 154 (280)
T 3tox_A 83 FGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFA-------- 154 (280)
T ss_dssp HSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCT--------
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCC--------
Confidence 111 2245899999999999999999999999976 479999999887521111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-C--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-M-- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-~-- 371 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++... .
T Consensus 155 ---------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gIrvn~v~PG~v~T~~~~~~~~~ 203 (280)
T 3tox_A 155 ---------------------------GVAPYAASKAGLIGLVQALAVELGAR----GIRVNALLPGGTDTPANFANLPG 203 (280)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBSSTTSGGGSTT
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEECCCCCchhhhhccc
Confidence 12789999999999999999999987 9999999999999998643 1
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
...+|+|+|+.++||+++.++++||+.| .+||++...
T Consensus 204 ~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i--~vdGG~~~~ 256 (280)
T 3tox_A 204 AAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAAL--LADGGASVT 256 (280)
T ss_dssp CCTHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGGC
T ss_pred cCHHHHHHHhccCccCCCcCHHHHHHHHHHHhCccccCCcCcEE--EECCCcccc
Confidence 1268999999999999999999999999 788887653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=257.45 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=156.0
Q ss_pred CCCCCCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------
Q psy8786 179 NGSVDPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------- 234 (484)
Q Consensus 179 ~~~~~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------- 234 (484)
...++|+||++|||||++ |||+++|++|+++ |++|++++|+++..+...+.....
T Consensus 23 ~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 23 RTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred cchhccCCCEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 335678999999999996 9999999999999 899999999875433322221110
Q ss_pred ---------------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchH
Q psy8786 235 ---------------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 ---------------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~ 288 (484)
+.. ..+.++|+..+++|+.|++.++++++|.|+++|+||++||.++. ..+.
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~--- 178 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPH--- 178 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTT---
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCC---
Confidence 111 23458999999999999999999999999888999999999874 2222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.
T Consensus 179 ----------------------------------~~~Y~asKaal~~l~~~la~e~~~~----gIrvn~v~PG~v~T~~~ 220 (296)
T 3k31_A 179 ----------------------------------YNVMGVCKAALEASVKYLAVDLGKQ----QIRVNAISAGPVRTLAS 220 (296)
T ss_dssp ----------------------------------TTHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECCCCCSSC
T ss_pred ----------------------------------chhhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEEECCCcCchh
Confidence 2789999999999999999999987 99999999999999987
Q ss_pred cCCC-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 369 SFMG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 369 ~~~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
.... ..+|+|+|+.++||+++.++++||+.+ .+||++...
T Consensus 221 ~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i--~vdGG~~~~ 277 (296)
T 3k31_A 221 SGISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETV--HVDCGYHVV 277 (296)
T ss_dssp CSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGGC
T ss_pred hcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEE--EECCCcccc
Confidence 5431 269999999999999999999999999 788888653
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=254.31 Aligned_cols=182 Identities=20% Similarity=0.178 Sum_probs=151.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~-------------------------- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++++ .+.+++..+++...
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRL-GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 8999987664 45555555554321
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-c-ccccchHHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-H-LSQITNLELKKRL 294 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~-~~~~~~~~~~~~~ 294 (484)
+ ....+.++|+.++++|+.|+++++++++|.|+++|+||++||..+ . ..+.
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 163 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPK--------- 163 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTT---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCC---------
Confidence 1 012256899999999999999999999999988999999999874 2 2222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC----
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF---- 370 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~---- 370 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++...
T Consensus 164 ----------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~ 211 (270)
T 3is3_A 164 ----------------------------HSLYSGSKGAVDSFVRIFSKDCGDK----KITVNAVAPGGTVTDMFHEVSHH 211 (270)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSTTHHHHGGG
T ss_pred ----------------------------CchhHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeCCccChhhhhhhhh
Confidence 2789999999999999999999988 9999999999999998641
Q ss_pred -------C----------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 -------M----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 -------~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
. +..+|+|+|+.++||+++.++|+||+.| .+||++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~ 269 (270)
T 3is3_A 212 YIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVL--TLDGGA 269 (270)
T ss_dssp GSTTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTC
T ss_pred ccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEE--EeCCCC
Confidence 0 1267999999999999999999999999 678775
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=253.31 Aligned_cols=183 Identities=22% Similarity=0.214 Sum_probs=155.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc-----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+||++|||||++|||+++|++|+++ |++|+++ +|+.+.+++..+++...
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~-G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAEN-GYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999 8998886 88887777666665431
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .|+||++||.++.....
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------ 149 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLE------------ 149 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCT------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCC------------
Confidence 0 112345889999999999999999999999976 47999999988742211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.....
T Consensus 150 ------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~~ 201 (258)
T 3oid_A 150 ------------------------NYTTVGVSKAALEALTRYLAVELSPK----QIIVNAVSGGAIDTDALKHFPNREDL 201 (258)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEECCBCSGGGGGCTTHHHH
T ss_pred ------------------------CcHHHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEeeCCCcChhhhhcccCHHH
Confidence 12789999999999999999999988 999999999999999876542
Q ss_pred ------------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
..+|+|+|+.++||+++.++++||+.+ .+||++...
T Consensus 202 ~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i--~vdGG~~~~ 249 (258)
T 3oid_A 202 LEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTI--IVDGGRSLL 249 (258)
T ss_dssp HHHHHHHCTTSSCBCHHHHHHHHHHHTSSTTTTCCSCEE--EESTTGGGB
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCccCCEE--EECCCccCC
Confidence 268999999999999999999999999 788888654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=259.48 Aligned_cols=187 Identities=22% Similarity=0.195 Sum_probs=158.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARA-GANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD 115 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 899999999988877776665321
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
.....+.++|+..+++|+.|+++++++++|.|++ .++||++||..+. ....
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~-------- 187 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYP-------- 187 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCT--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCC--------
Confidence 1123356899999999999999999999999865 4899999998873 2211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|.|++.....
T Consensus 188 ----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~~ 235 (293)
T 3rih_A 188 ----------------------------GWSHYGASKAAQLGFMRTAAIELAPR----GVTVNAILPGNILTEGLVDMGE 235 (293)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCCHHHHHTCH
T ss_pred ----------------------------CCHHHHHHHHHHHHHHHHHHHHHhhh----CeEEEEEecCCCcCcchhhccH
Confidence 12789999999999999999999988 999999999999998754321
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccccccccceeeccc
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPF 411 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~~ 411 (484)
..+|+|+|+.++||+++.++++||+.| .+||++..+.
T Consensus 236 ~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~a~~itG~~i--~vdGG~~~~~ 286 (293)
T 3rih_A 236 EYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAI--VVDGGQVLPE 286 (293)
T ss_dssp HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTCBS
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEE--EECCCccCCC
Confidence 268999999999999999999999999 7888886543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=258.80 Aligned_cols=187 Identities=18% Similarity=0.119 Sum_probs=149.6
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC---chhHHHHHHHHHhc----------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD---KKKGAEAVQVLKDR---------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~---~~~~~~~~~~l~~~---------------------- 234 (484)
..++++||++|||||++|||+++|++|+++ |++|++++|+ .+.+++..+++...
T Consensus 5 ~~~~l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 83 (262)
T 3ksu_A 5 KYHDLKNKVIVIAGGIKNLGALTAKTFALE-SVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFD 83 (262)
T ss_dssp CCSCCTTCEEEEETCSSHHHHHHHHHHTTS-SCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 346789999999999999999999999999 8999998764 34455555555331
Q ss_pred ----------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHH
Q psy8786 235 ----------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 ----------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
+ ....+.++|+..+++|+.|++.++++++|.|+++|+||++||.++......
T Consensus 84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~------ 157 (262)
T 3ksu_A 84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGF------ 157 (262)
T ss_dssp HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCC------
Confidence 1 112346899999999999999999999999988899999999887322111
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 158 ------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~ 203 (262)
T 3ksu_A 158 ------------------------------YSTYAGNKAPVEHYTRAASKELMKQ----QISVNAIAPGPMDTSFFYGQE 203 (262)
T ss_dssp ------------------------------CCC-----CHHHHHHHHHHHHTTTT----TCEEEEEEECCCCTHHHHTCC
T ss_pred ------------------------------CchhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEeeCCCcCccccccC
Confidence 2689999999999999999999887 99999999999999986432
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
...+|+|+|+.++||+++ +.++||+.| .+||++..+
T Consensus 204 ~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i--~vdGg~~~~ 254 (262)
T 3ksu_A 204 TKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTD-GWWINGQTI--FANGGYTTR 254 (262)
T ss_dssp ------------CCCCSCCGGGTHHHHHHHHTT-TTTCCSCEE--EESTTCCCC
T ss_pred chHHHHHHHhcCcccCCCCHHHHHHHHHHHcCC-CCCccCCEE--EECCCccCC
Confidence 126899999999999999 999999999 788888653
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=255.80 Aligned_cols=185 Identities=18% Similarity=0.189 Sum_probs=147.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~------------------------- 234 (484)
..+++||++|||||++|||+++|++|+++ |++|++++| +.+.+++..+++...
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAAS-GFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999 899999985 666666665555431
Q ss_pred -------------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccch
Q psy8786 235 -------------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITN 287 (484)
Q Consensus 235 -------------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~ 287 (484)
+. .....++|+.++++|+.|++.++++++|.|++ .|+||++||.++. +.+.
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~-- 180 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPE-- 180 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------C--
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCC--
Confidence 11 01245899999999999999999999999965 5799999999884 3222
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++
T Consensus 181 -----------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~ 221 (280)
T 4da9_A 181 -----------------------------------RLDYCMSKAGLAAFSQGLALRLAET----GIAVFEVRPGIIRSDM 221 (280)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCBCC--
T ss_pred -----------------------------------ccHHHHHHHHHHHHHHHHHHHHHHh----CcEEEEEeecCCcCCc
Confidence 2789999999999999999999887 9999999999999998
Q ss_pred ccCCC----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 368 SSFMG----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 368 ~~~~~----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..... ..+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 222 ~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 277 (280)
T 4da9_A 222 TAAVSGKYDGLIESGLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVI--QADGGLSI 277 (280)
T ss_dssp --------------------CCBCHHHHHHHHHHHHTSTTGGGTTCEE--EESTTCC-
T ss_pred hhhcchhHHHHHhhcCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEE--EECCCccc
Confidence 65421 158999999999999999999999999 78888754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=253.54 Aligned_cols=184 Identities=16% Similarity=0.129 Sum_probs=154.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
..+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 3 MKRLEGKSALITGSARGIGRAFAEAYVRE-GATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp -CTTTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999999 899999999988777666554321
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+ ....+.++|+..+++|+.|+++++++++|.|.+ +|+||++||.++. +.+.
T Consensus 82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 151 (259)
T 4e6p_A 82 GLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEAL---------- 151 (259)
T ss_dssp SCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCC----------
Confidence 1 012245899999999999999999999999865 5799999999884 3222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 152 ---------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~~ 200 (259)
T 4e6p_A 152 ---------------------------VAIYCATKAAVISLTQSAGLDLIKH----RINVNAIAPGVVDGEHWDGVDALF 200 (259)
T ss_dssp ---------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCSTTHHHHHHHH
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHHHHHhhhc----CCEEEEEEECCCccchhhhhhhhh
Confidence 2789999999999999999999988 99999999999999975422
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|++++||+++.++++||+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i--~vdgG~~ 257 (259)
T 4e6p_A 201 ARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTY--NVDGGNW 257 (259)
T ss_dssp HHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEE--EESTTSS
T ss_pred hhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEE--EECcChh
Confidence 1269999999999999999999999999 6777764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=254.49 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=155.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
...|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 6 GGLLTDKVVVISGVGPALGTTLARRCAEQ-GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp -CTTTTCEEEEESCCTTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCcCCcEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999999999999 899999999988887776666432
Q ss_pred -----------C-C-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------A-S-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~-~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
. . ...+.++|+..+++|+.|++.++++++|.|++ +|+||++||..+......
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 156 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAK-------- 156 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCTT--------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCCc--------
Confidence 1 1 12245899999999999999999999999865 689999999987432211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 157 ----------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~ 204 (264)
T 3ucx_A 157 ----------------------------YGAYKMAKSALLAMSQTLATELGEK----GIRVNSVLPGYIWGGTLKSYFEH 204 (264)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEESSCBSHHHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecCccccccHHHHHHh
Confidence 2789999999999999999999987 99999999999999875321
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.++++||+.+ .+||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~ 261 (264)
T 3ucx_A 205 QAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQAL--DVNCGE 261 (264)
T ss_dssp HHHHTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEE--EESTTS
T ss_pred hhhhcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCccccCCCCCEE--EECCCc
Confidence 1268999999999999999999999999 677765
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=257.26 Aligned_cols=186 Identities=21% Similarity=0.224 Sum_probs=156.3
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|+++++||++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 83 (281)
T 3svt_A 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAA-GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVD 83 (281)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHH
T ss_pred CccCcCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 467789999999999999999999999999 899999999988877776665421
Q ss_pred ----------------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchH
Q psy8786 235 ----------------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 ----------------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~ 288 (484)
+. ...+.++|+..+++|+.|+++++++++|.|++ +|+||++||.++. ..+.
T Consensus 84 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--- 160 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRW--- 160 (281)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTT---
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCC---
Confidence 11 12345889999999999999999999999965 4799999998874 2222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.
T Consensus 161 ----------------------------------~~~Y~asK~a~~~l~~~la~e~~~~----gi~vn~v~PG~v~t~~~ 202 (281)
T 3svt_A 161 ----------------------------------FGAYGVTKSAVDHLMQLAADELGAS----WVRVNSIRPGLIRTDLV 202 (281)
T ss_dssp ----------------------------------CTHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSGGG
T ss_pred ----------------------------------ChhHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCcCcCcch
Confidence 2789999999999999999999988 99999999999999987
Q ss_pred cCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 369 SFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 369 ~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
... ...+|+|+|+.++||+++.+++++|+.+ .+||++..
T Consensus 203 ~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~itG~~~--~vdgG~~~ 258 (281)
T 3svt_A 203 AAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVI--NVDGGQML 258 (281)
T ss_dssp HHHHTCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCCCCCEE--EeCCChhc
Confidence 532 1268999999999999999999999999 67888754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=251.48 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=153.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKE-GARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999 899999999988877776665321
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhh-hc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLL-RR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l-~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ....+.++|+..+++|+.|+++++++++|+| ++ .|+||++||..+.....
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 151 (257)
T 3imf_A 82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGP---------- 151 (257)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCC----------
Confidence 1 1123458999999999999999999999998 33 48999999988742211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh-hhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD-CELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela-~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
+...|++||+|+++|+++++.|++ ++ |||||+|+||+|+|++....
T Consensus 152 --------------------------~~~~Y~asKaa~~~l~~~la~e~~~~~----gIrvn~v~PG~v~t~~~~~~~~~ 201 (257)
T 3imf_A 152 --------------------------GVIHSAAAKAGVLAMTKTLAVEWGRKY----GIRVNAIAPGPIERTGGADKLWI 201 (257)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCBSSCCCC-----
T ss_pred --------------------------CcHHHHHHHHHHHHHHHHHHHHhcccc----CeEEEEEEECCCcCCcchhhccc
Confidence 127899999999999999999997 66 99999999999999964321
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 202 ~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 252 (257)
T 3imf_A 202 SEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAYINGTCM--TMDGGQHL 252 (257)
T ss_dssp --CCSHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTS
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEE--EECCCccc
Confidence 1158999999999999999999999999 78888754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=257.35 Aligned_cols=184 Identities=20% Similarity=0.209 Sum_probs=154.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADE-GCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999 899999999988776665554211
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHhhc
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~~ 297 (484)
.....+.++|+..+++|+.|++.++++++|.|++ .|+||++||.++.. .+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~------------ 171 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGG------------ 171 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCC------------
Confidence 1123456899999999999999999999999954 48999999988843 222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 172 -------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~~~~~~ 222 (277)
T 3gvc_A 172 -------------------------TGAYGMSKAGIIQLSRITAAELRSS----GIRSNTLLPAFVDTPMQQTAMAMFDG 222 (277)
T ss_dssp -------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHHTCC--
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCccCchHHHhhhcchh
Confidence 2789999999999999999999988 99999999999999974320
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 223 ~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i--~vdGG~~~ 274 (277)
T 3gvc_A 223 ALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQ--IADGGTIA 274 (277)
T ss_dssp ----CCHHHHHHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hHHHHhhhhhhhccccCCCCHHHHHHHHHHHcCCccCCccCcEE--EECCcchh
Confidence 1268999999999999999999999999 78888754
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=252.43 Aligned_cols=187 Identities=22% Similarity=0.206 Sum_probs=152.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC------------chhHHHHHHHHHhc---------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD------------KKKGAEAVQVLKDR--------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~------------~~~~~~~~~~l~~~--------------- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+ .+++++..+++...
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAAD-GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 5679999999999999999999999999 9999999987 44444444333221
Q ss_pred -------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccc-c
Q psy8786 235 -------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQ-I 285 (484)
Q Consensus 235 -------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~-~ 285 (484)
.......++|+.++++|+.|+++++++++|.|++ +|+||++||.++.... .
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 167 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS 167 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc
Confidence 1122256899999999999999999999999865 4799999999884321 1
Q ss_pred chHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
... +...|++||+|+++|+++++.|++++ ||+||+|+||+|+|
T Consensus 168 ~~~---------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~T 210 (278)
T 3sx2_A 168 ADP---------------------------------GSVGYVAAKHGVVGLMRVYANLLAGQ----MIRVNSIHPSGVET 210 (278)
T ss_dssp SSH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCBSS
T ss_pred CCC---------------------------------CchHhHHHHHHHHHHHHHHHHHHhcc----CcEEEEEecCCccC
Confidence 100 01689999999999999999999988 99999999999999
Q ss_pred CCccCC-------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 366 NMSSFM-------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 366 ~m~~~~-------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
++.... ...+|+|+|+.++||+++.++++||+.+ .+||++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i--~vdGG~~ 276 (278)
T 3sx2_A 211 PMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTL--PVDAGFL 276 (278)
T ss_dssp TTTSSHHHHHHHHHHHHHCC--CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTTT
T ss_pred ccchhhhHHHHHhhccchhhhhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEE--eECCCcc
Confidence 986521 1257999999999999999999999999 7788874
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=250.42 Aligned_cols=183 Identities=18% Similarity=0.155 Sum_probs=151.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
..|+||++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARY-GATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 4579999999999999999999999999 899999999988776665544210
Q ss_pred --------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHH
Q psy8786 235 --------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 --------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
+ ......++|+.++++|+.|++.++++++|+|++ .|+||++||.++......
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----- 161 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRAN----- 161 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTT-----
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCC-----
Confidence 1 112345889999999999999999999999965 489999999987432211
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|+++ +||||+|+||+|+|++....
T Consensus 162 -------------------------------~~~Y~asK~a~~~l~~~la~e~~~-----~irvn~v~PG~v~t~~~~~~ 205 (252)
T 3f1l_A 162 -------------------------------WGAYAASKFATEGMMQVLADEYQQ-----RLRVNCINPGGTRTAMRASA 205 (252)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHTTT-----TCEEEEEECCSBSSHHHHHH
T ss_pred -------------------------------CchhHHHHHHHHHHHHHHHHHhcC-----CcEEEEEecCcccCchhhhh
Confidence 278999999999999999999864 39999999999999985432
Q ss_pred -------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.++++||+.+ .+||++.
T Consensus 206 ~~~~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i--~vdgG~~ 247 (252)
T 3f1l_A 206 FPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTF--DAQPGRK 247 (252)
T ss_dssp CTTCCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEE--ESSCC--
T ss_pred CCccchhccCCHHHHHHHHHHHcCccccCCCCCEE--EeCCCcC
Confidence 1268999999999999999999999999 7788764
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=255.64 Aligned_cols=185 Identities=20% Similarity=0.181 Sum_probs=152.4
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
..++++||++|||||++|||+++|++|+++ |++|++++|++ ..++..+++...
T Consensus 25 ~~~~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 25 GPFSLAGRTAVVTGAGSGIGRAIAHGYARA-GAHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp CTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999 89999999764 333333333221
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+ ....+.++|+..+++|+.|++.++++++|.|++ .|+||++||.++......
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~-------- 174 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRN-------- 174 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS--------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCC--------
Confidence 1 112256899999999999999999999999864 489999999988422211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 175 ----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~ 222 (273)
T 3uf0_A 175 ----------------------------VAAYAASKHAVVGLTRALASEWAGR----GVGVNALAPGYVVTANTAALRAD 222 (273)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSGGGHHHHTS
T ss_pred ----------------------------ChhHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEEeCCCcCCchhhcccC
Confidence 2789999999999999999999988 99999999999999986432
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.++++||+.| .+||++.
T Consensus 223 ~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~a~~itG~~i--~vdGG~~ 271 (273)
T 3uf0_A 223 DERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVL--AVDGGWL 271 (273)
T ss_dssp HHHHHHHHHHSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCEE--EECcCcc
Confidence 1278999999999999999999999999 7788874
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=251.84 Aligned_cols=183 Identities=20% Similarity=0.195 Sum_probs=143.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 2 VMQLKSRVFIVTGASSGLGAAVTRMLAQE-GATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFG 80 (257)
T ss_dssp --CCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999 899999999876655444333211
Q ss_pred ---------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCcc-ccccc
Q psy8786 235 ---------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGH-LSQIT 286 (484)
Q Consensus 235 ---------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~-~~~~~ 286 (484)
+.. ....++|+..+++|+.|++.++++++|.|++ .|+||++||.++. +.+.
T Consensus 81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~- 159 (257)
T 3tpc_A 81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIG- 159 (257)
T ss_dssp CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTT-
T ss_pred CCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCC-
Confidence 110 2345899999999999999999999999975 4799999999874 2222
Q ss_pred hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|+
T Consensus 160 ------------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~ 199 (257)
T 3tpc_A 160 ------------------------------------QAAYAASKGGVAALTLPAARELARF----GIRVVTIAPGIFDTP 199 (257)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBSCC
T ss_pred ------------------------------------CcchHHHHHHHHHHHHHHHHHHHHc----CeEEEEEEeCCCCCh
Confidence 2789999999999999999999988 999999999999999
Q ss_pred CccCC----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 367 MSSFM----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 367 m~~~~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+.... ...+|+|+|+.++||+++ .+++|+.+ .+||++..
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~~r~~~~~dva~~v~~l~s~--~~itG~~i--~vdGG~~~ 254 (257)
T 3tpc_A 200 MMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICEN--TMLNGEVI--RLDGALRM 254 (257)
T ss_dssp --------------CCSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEE--EESTTCCC
T ss_pred hhccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccc--CCcCCcEE--EECCCccC
Confidence 86432 126899999999999975 79999999 77888754
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=255.15 Aligned_cols=184 Identities=21% Similarity=0.266 Sum_probs=153.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++| +.+..++..+++...
T Consensus 23 ~~~l~~k~vlVTGas~gIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~ 101 (269)
T 4dmm_A 23 ALPLTDRIALVTGASRGIGRAIALELAAA-GAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVI 101 (269)
T ss_dssp -CTTTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999 899999888 555555555544321
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+ ......++|+..+++|+.|+++++++++|.|++ .|+||++||.++. +.+.
T Consensus 102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 174 (269)
T 4dmm_A 102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPG------- 174 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTT-------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCC-------
Confidence 1 112345899999999999999999999999864 5899999998873 3222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 175 ------------------------------~~~Y~asK~a~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~ 220 (269)
T 4dmm_A 175 ------------------------------QANYSAAKAGVIGLTKTVAKELASR----GITVNAVAPGFIATDMTSELA 220 (269)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBTTSCSCHHH
T ss_pred ------------------------------chhHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEEECCCcCccccccc
Confidence 2789999999999999999999988 99999999999999986532
Q ss_pred -----------CCCCHHhHHHHHHHHHhh-hccccccccccccccceee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERV-ISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~-~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++ .+.++||+.+ .+||++.
T Consensus 221 ~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i--~vdGG~~ 267 (269)
T 4dmm_A 221 AEKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVI--NIDGGLV 267 (269)
T ss_dssp HHHHGGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEE--EESTTSC
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCCEE--EECCCee
Confidence 237899999999999997 8899999999 6788764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=250.68 Aligned_cols=185 Identities=21% Similarity=0.169 Sum_probs=149.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|+++ +|+.+..++..+++...
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQE-GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 8999988 55666555555554321
Q ss_pred ------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 ------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 ------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ......++|+..+++|+.|++.++++++|.|+++|+||++||.++. ....
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 153 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGP--------- 153 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCST---------
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCC---------
Confidence 1 1133568999999999999999999999999888999999998874 2111
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
+...|++||+|+++|+++++.|+++ +||||+|+||+|+|++.....
T Consensus 154 ---------------------------~~~~Y~asKaa~~~l~~~la~e~~~-----~I~vn~v~PG~v~T~~~~~~~~~ 201 (259)
T 3edm_A 154 ---------------------------GALAYATSKGAVMTFTRGLAKEVGP-----KIRVNAVCPGMISTTFHDTFTKP 201 (259)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECCBCC---------
T ss_pred ---------------------------CcHHHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEEECCCcCcccccccCh
Confidence 1278999999999999999999864 399999999999999875432
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
..+|+|+|+.++||+++.+.++||+.+ .+||++...
T Consensus 202 ~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i--~vdGg~~~~ 251 (259)
T 3edm_A 202 EVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACY--DINGGVLFS 251 (259)
T ss_dssp -------------CCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESBCSSBC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEE--EECCCcCCC
Confidence 158999999999999999999999999 788888653
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=252.92 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=154.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRH-GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999999999 899999999988777666655321
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+ ....+.++|+.++++|+.|+++++++++|.|++ +|+||++||.++. ..+.
T Consensus 102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 173 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQAL-------- 173 (277)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTT--------
T ss_pred HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCC--------
Confidence 1 112345899999999999999999999998854 5899999999873 3222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--- 370 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--- 370 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++...
T Consensus 174 -----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~ 220 (277)
T 4fc7_A 174 -----------------------------QVHAGSAKAAVDAMTRHLAVEWGPQ----NIRVNSLAPGPISGTEGLRRLG 220 (277)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBSSSHHHHHHS
T ss_pred -----------------------------cHHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEECCEecchhhhhcc
Confidence 2789999999999999999999988 9999999999999985211
Q ss_pred ---------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 ---------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 ---------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+..+|+|+|+.++||+++.++|+||+.+ .+||++..
T Consensus 221 ~~~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~~~~itG~~i--~vdGG~~~ 272 (277)
T 4fc7_A 221 GPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVL--VADGGAWL 272 (277)
T ss_dssp CCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTHHH
T ss_pred CCHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCCccCCcCCCEE--EECCCccc
Confidence 01268999999999999999999999999 77887644
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-30 Score=253.08 Aligned_cols=183 Identities=20% Similarity=0.232 Sum_probs=149.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+|.+|++|||||++|||+++|++|+++ |++|++++| +.+.+++..+++...
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 99 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKA-GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA 99 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999999999 899999999 555555555554321
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+ ....+.++|+..+++|+.|++.++++++|.|++ .|+||++||.++. +.+.
T Consensus 100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 172 (281)
T 3v2h_A 100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPF------- 172 (281)
T ss_dssp HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCC-------
Confidence 0 012256899999999999999999999999865 3899999999874 3222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 173 ------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~ 218 (281)
T 3v2h_A 173 ------------------------------KSAYVAAKHGIMGLTKTVALEVAES----GVTVNSICPGYVLTPLVEKQI 218 (281)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCC-------
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEECCCCcCcchhhhc
Confidence 2789999999999999999999988 99999999999999985421
Q ss_pred --------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i--~vdGG~~ 279 (281)
T 3v2h_A 219 PDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHV--SMDGGWT 279 (281)
T ss_dssp ---------------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEE--EESTTGG
T ss_pred chhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEE--EECCCcc
Confidence 1158999999999999999999999999 7788874
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=246.57 Aligned_cols=181 Identities=23% Similarity=0.291 Sum_probs=150.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~---------------------------- 234 (484)
+.+|++|||||++|||+++|++|+++ |++|++++| +.+++++..+++...
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEE-GYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999 899988877 445555555544321
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
.......++|+..+++|+.|+++++++++|+|++ .|+||++||.++. +.+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (246)
T 3osu_A 81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPG---------- 150 (246)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCC----------
Confidence 1123356899999999999999999999999854 5899999998873 3222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 151 ---------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~~ 199 (246)
T 3osu_A 151 ---------------------------QANYVATKAGVIGLTKSAARELASR----GITVNAVAPGFIVSDMTDALSDEL 199 (246)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBGGGCCSCSCHHH
T ss_pred ---------------------------ChHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEECCCcCCcccccCHHH
Confidence 2789999999999999999999988 999999999999999876532
Q ss_pred ------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+.++||+.+ .+||++.
T Consensus 200 ~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i--~vdgG~~ 245 (246)
T 3osu_A 200 KEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTI--HVNGGMY 245 (246)
T ss_dssp HHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTSC
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE--EeCCCcc
Confidence 168999999999999999999999999 6777763
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=247.01 Aligned_cols=185 Identities=16% Similarity=0.156 Sum_probs=147.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
+++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKG-GAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999 899999999988777665554321
Q ss_pred ---------CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc------CCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 ---------AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR------HARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 ---------~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~------~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
+.. ....++++..+++|+.|++.++++++|.|++ .++||++||..+. ..+.
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 156 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPN------ 156 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTT------
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCC------
Confidence 111 1245899999999999999999999999965 4689999999874 2222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 157 -------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~ 201 (261)
T 3n74_A 157 -------------------------------LAWYNATKGWVVSVTKALAIELAPA----KIRVVALNPVAGETPLLTTF 201 (261)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEC----------
T ss_pred -------------------------------ccHHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCcccChhhhhh
Confidence 2789999999999999999999987 99999999999999986532
Q ss_pred C-------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 G-------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ~-------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. ..+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i--~vdgG~~~ 256 (261)
T 3n74_A 202 MGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMITGVAL--DVDGGRSI 256 (261)
T ss_dssp ---------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTTTC
T ss_pred cccCcHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEE--EecCCccc
Confidence 1 168999999999999999999999999 77887754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=246.07 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=155.8
Q ss_pred CCCCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh----c-------------------
Q psy8786 180 GSVDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----R------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~----~------------------- 234 (484)
|+++++||++|||||+ +|||+++|++|+++ |++|++++|+++..+...+.... .
T Consensus 1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFA 79 (266)
T ss_dssp CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHH
T ss_pred CccccCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHH
Confidence 3567899999999999 77999999999999 89999999986543332222211 0
Q ss_pred ----------------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccch
Q psy8786 235 ----------------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITN 287 (484)
Q Consensus 235 ----------------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~ 287 (484)
+.. ....++++..+++|+.+++.++++++|.|+++|+||++||.++. +.+.
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 157 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPN-- 157 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTT--
T ss_pred HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCC--
Confidence 111 12458899999999999999999999999988999999999884 3222
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++
T Consensus 158 -----------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~ 198 (266)
T 3oig_A 158 -----------------------------------YNVMGVAKASLDASVKYLAADLGKE----NIRVNSISAGPIRTLS 198 (266)
T ss_dssp -----------------------------------THHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCSGG
T ss_pred -----------------------------------cchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEecCcccccc
Confidence 2789999999999999999999988 9999999999999998
Q ss_pred ccCCC-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeeccc
Q psy8786 368 SSFMG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVPF 411 (484)
Q Consensus 368 ~~~~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~~ 411 (484)
..... ..+|+|+|+.++||+++.+.+++|+.+ .+||+|....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i--~vdGG~~~~~ 257 (266)
T 3oig_A 199 AKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENL--HVDSGFHITA 257 (266)
T ss_dssp GTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGGCC
T ss_pred cccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEE--EECCCeEEee
Confidence 76542 268999999999999999999999999 7888886543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=250.61 Aligned_cols=185 Identities=17% Similarity=0.144 Sum_probs=149.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAE-GARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKI 80 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999 899999999987766554432111
Q ss_pred -------CC-----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -------AS-----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -------~~-----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. .....++|+.++++|+.|++.++++++|.|++ +|+||++||..+......
T Consensus 81 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 151 (281)
T 3zv4_A 81 DTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGG--------- 151 (281)
T ss_dssp CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSSS---------
T ss_pred CEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCCC---------
Confidence 10 01224679999999999999999999999854 689999999987422111
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|+++|+++++.|+++ +||||+|+||+|+|+|....
T Consensus 152 ---------------------------~~~Y~asKaa~~~l~~~la~e~~~-----~Irvn~v~PG~v~T~~~~~~~~~~ 199 (281)
T 3zv4_A 152 ---------------------------GPLYTATKHAVVGLVRQMAFELAP-----HVRVNGVAPGGMNTDLRGPSSLGL 199 (281)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHTT-----TSEEEEEEECSSCC--CCCTTCC-
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHhcC-----CCEEEEEECCcCcCCccccccccc
Confidence 278999999999999999999865 39999999999999986421
Q ss_pred ---------------------CCCCHHhHHHHHHHHHh-hhccccccccccccccceeeccc
Q psy8786 372 ---------------------GNVNIFDDSSTFNAFER-VISHFLIGQQINTFIPAIYTVPF 411 (484)
Q Consensus 372 ---------------------~~~~peevA~~~~~L~s-~~a~~itG~~i~~~~~g~~~~~~ 411 (484)
+..+|+|+|+.++||++ +.+.|+||+.| .+||++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i--~vdGG~~~~~ 259 (281)
T 3zv4_A 200 SEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALL--NYDGGMGVRG 259 (281)
T ss_dssp -------CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEE--EESSSGGGCC
T ss_pred ccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccccccCcEE--EECCCCcccc
Confidence 12789999999999999 88999999999 7899886543
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=255.16 Aligned_cols=184 Identities=22% Similarity=0.221 Sum_probs=151.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC------------chhHHHHHHHHHhc---------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD------------KKKGAEAVQVLKDR--------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~------------~~~~~~~~~~l~~~--------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+ .+++++..+++...
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQD-GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHC-CCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 4579999999999999999999999999 8999999876 44444444333221
Q ss_pred -----------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-
Q psy8786 235 -----------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH- 281 (484)
Q Consensus 235 -----------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~- 281 (484)
.......++|+.++++|+.|++.++++++|.|++ +|+||++||.++.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 1123356899999999999999999999999954 4799999999884
Q ss_pred ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q psy8786 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361 (484)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG 361 (484)
+.+. ...|++||+|+++|+++++.|++++ ||+||+|+||
T Consensus 201 ~~~~-------------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG 239 (317)
T 3oec_A 201 GAPG-------------------------------------QSHYAASKHGVQGLMLSLANEVGRH----NIRVNSVNPG 239 (317)
T ss_dssp CCTT-------------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEC
T ss_pred CCCC-------------------------------------CcchHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecC
Confidence 3222 2789999999999999999999988 9999999999
Q ss_pred cccCCCccC------------------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 362 YVATNMSSF------------------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 362 ~V~T~m~~~------------------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+|+|++... ....+|+|+|++++||+++.++|+||+.| .+||++..
T Consensus 240 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i--~vdGG~~~ 315 (317)
T 3oec_A 240 AVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAI--PVDGGQLA 315 (317)
T ss_dssp SBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTGGG
T ss_pred cccCccccchhhhhhhhhhccccchhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEE--EECcchhh
Confidence 999987421 01248999999999999999999999999 78888743
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=250.63 Aligned_cols=185 Identities=14% Similarity=0.128 Sum_probs=148.3
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------------------------
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-------------------------- 233 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-------------------------- 233 (484)
.+++||++|||||+ +|||+++|++|+++ |++|++++|+++..+...+....
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 45799999999999 56999999999999 89999999985432221111110
Q ss_pred c-----------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHH
Q psy8786 234 R-----------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 234 ~-----------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
. +.. ..+.++|+..+++|+.+++.++++++|.|+++|+||++||.++......
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~------ 179 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPN------ 179 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTT------
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCc------
Confidence 0 111 2245899999999999999999999999988899999999987432111
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.....
T Consensus 180 ------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~ 225 (293)
T 3grk_A 180 ------------------------------YNVMGVAKAALEASVKYLAVDLGPQ----NIRVNAISAGPIKTLAASGIG 225 (293)
T ss_dssp ------------------------------TTHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCC------C
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHHhHh----CCEEEEEecCCCcchhhhccc
Confidence 2789999999999999999999988 999999999999999875432
Q ss_pred -----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 226 ~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 277 (293)
T 3grk_A 226 DFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVH--HADSGYHV 277 (293)
T ss_dssp CHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred chHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCcceEE--EECCCccc
Confidence 269999999999999999999999999 78888865
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=252.48 Aligned_cols=181 Identities=23% Similarity=0.259 Sum_probs=151.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAAR-GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 899999999988887777666432
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHH--hhhc--CCEEEEEeCCCccc-cccchHHHHHHH
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFP--LLRR--HARVVNLSSSAGHL-SQITNLELKKRL 294 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp--~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~ 294 (484)
+ ......++|+..+++|+.|++.++++++| .|++ .|+||++||.++.. .+.
T Consensus 101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~--------- 171 (279)
T 3sju_A 101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMY--------- 171 (279)
T ss_dssp SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCC---------
Confidence 1 11234588999999999999999999999 4543 48999999998842 222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 172 ----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~ 219 (279)
T 3sju_A 172 ----------------------------AAPYTASKHGVVGFTKSVGFELAKT----GITVNAVCPGYVETPMAERVREG 219 (279)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEESSBCSHHHHHHHHS
T ss_pred ----------------------------ChhHHHHHHHHHHHHHHHHHHHHhh----CcEEEEEeeCcccchHHHHHHhh
Confidence 2789999999999999999999988 99999999999999875321
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i--~vdGG~~ 277 (279)
T 3sju_A 220 YARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQAL--NVCGGLG 277 (279)
T ss_dssp CCSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEE--EESTTCC
T ss_pred hhhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEE--EECCCcc
Confidence 1268999999999999999999999999 7788874
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=249.07 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=150.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------------HHHHHHHHHhc----------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------------GAEAVQVLKDR---------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------------~~~~~~~l~~~---------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+. .+++.+++.+.
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnn 101 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAA-GARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNN 101 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 35789999999999999999999999999 8999999987432 22333333222
Q ss_pred -C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccc
Q psy8786 235 -A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 -~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .|+||++||.++. ..+.
T Consensus 102 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------------------- 162 (266)
T 3uxy_A 102 AGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPG------------------- 162 (266)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTT-------------------
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCC-------------------
Confidence 1 112356899999999999999999999999975 5899999999884 2222
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------- 371 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.+..
T Consensus 163 ------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 220 (266)
T 3uxy_A 163 ------------------HALYCLTKAALASLTQCMGMDHAPQ----GIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVA 220 (266)
T ss_dssp ------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHH
T ss_pred ------------------ChHHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEeeCCCcchHhhhhhhcccccchHHHH
Confidence 2789999999999999999999988 99999999999999975321
Q ss_pred ---------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 221 ~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~ 264 (266)
T 3uxy_A 221 ELGRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLV--EVNGGKA 264 (266)
T ss_dssp HHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTCC
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEE--EECcCEe
Confidence 1258999999999999999999999999 7788764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=244.21 Aligned_cols=178 Identities=23% Similarity=0.221 Sum_probs=149.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAH-GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 4679999999999999999999999999 899999999988777766655321
Q ss_pred --------------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHH
Q psy8786 235 --------------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 --------------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
+. .....++|+..+++|+.|++.++++++|+|++ .++||++||..+......
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----- 163 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRAN----- 163 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTT-----
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCC-----
Confidence 11 01245899999999999999999999999965 379999999887432211
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhh-hcCCCCeEEEEEeCCcccCCCccC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDC-ELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|+++|+++++.|++. . |||||+|+||+|+|+|...
T Consensus 164 -------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~----~i~v~~v~PG~v~t~~~~~ 208 (247)
T 3i1j_A 164 -------------------------------WGAYGVSKFATEGLMQTLADELEGVT----AVRANSINPGATRTGMRAQ 208 (247)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHTTTS----SEEEEEEECCCCSSHHHHH
T ss_pred -------------------------------cchhHHHHHHHHHHHHHHHHHhcCCC----CeEEEEEecCcccCccchh
Confidence 278999999999999999999975 4 8999999999999998543
Q ss_pred C-------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 371 M-------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 371 ~-------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
. ...+|+|+|+.++||+++.+.++||+.|.
T Consensus 209 ~~~~~~~~~~~~p~dva~~~~~l~s~~~~~itG~~i~ 245 (247)
T 3i1j_A 209 AYPDENPLNNPAPEDIMPVYLYLMGPDSTGINGQALN 245 (247)
T ss_dssp HSTTSCGGGSCCGGGGTHHHHHHHSGGGTTCCSCEEE
T ss_pred cccccCccCCCCHHHHHHHHHHHhCchhccccCeeec
Confidence 2 12689999999999999999999999884
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=243.73 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=155.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASK-GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999 899999999988777666655321
Q ss_pred ----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+. .....++++..+++|+.|++.++++++|.|++ .++||++||..+. +.+.
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (247)
T 3lyl_A 81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPG---------- 150 (247)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT----------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCC----------
Confidence 10 12245899999999999999999999998854 4799999998873 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 151 ---------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~ 199 (247)
T 3lyl_A 151 ---------------------------QTNYCAAKAGVIGFSKSLAYEVASR----NITVNVVAPGFIATDMTDKLTDEQ 199 (247)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTTTTSCHHH
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHHHHc----CeEEEEEeeCcEecccchhccHHH
Confidence 2789999999999999999999987 999999999999999976542
Q ss_pred ------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+.+++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i--~vdgG~~ 245 (247)
T 3lyl_A 200 KSFIATKIPSGQIGEPKDIAAAVAFLASEEAKYITGQTL--HVNGGMY 245 (247)
T ss_dssp HHHHHTTSTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSS
T ss_pred HHHHhhcCCCCCCcCHHHHHHHHHHHhCCCcCCccCCEE--EECCCEe
Confidence 258999999999999999999999999 6777764
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=243.94 Aligned_cols=184 Identities=20% Similarity=0.191 Sum_probs=142.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH---------------------HHHHHHHhc-----
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA---------------------EAVQVLKDR----- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~---------------------~~~~~l~~~----- 234 (484)
+++++||++|||||++|||+++|++|+++ |++|++++|+.++.. ++.+.+.+.
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~ 82 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDA-GAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRI 82 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCHHHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCchHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCE
Confidence 46789999999999999999999999999 899999998644321 222222111
Q ss_pred -----C----------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----------CCEEEEEeCCCccccccchHH
Q psy8786 235 -----A----------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----------HARVVNLSSSAGHLSQITNLE 289 (484)
Q Consensus 235 -----~----------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----------~grIV~iSS~ag~~~~~~~~~ 289 (484)
+ ....+.++|+..+++|+.|++.++++++|.|++ .|+||++||.++......
T Consensus 83 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--- 159 (257)
T 3tl3_A 83 VVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIG--- 159 (257)
T ss_dssp EEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHH---
T ss_pred EEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCC---
Confidence 0 012456889999999999999999999999975 479999999988432211
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++..
T Consensus 160 ---------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gI~vn~v~PG~v~T~~~~ 202 (257)
T 3tl3_A 160 ---------------------------------QAAYSASKGGVVGMTLPIARDLASH----RIRVMTIAPGLFDTPLLA 202 (257)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTC-
T ss_pred ---------------------------------CccHHHHHHHHHHHHHHHHHHhccc----CcEEEEEEecCccChhhh
Confidence 1789999999999999999999988 999999999999999875
Q ss_pred CC----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 370 FM----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 370 ~~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.. ...+|+|+|+.++||+++ .++||+.| .+||++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~l~s~--~~itG~~i--~vdGG~~~ 254 (257)
T 3tl3_A 203 SLPEEARASLGKQVPHPSRLGNPDEYGALAVHIIEN--PMLNGEVI--RLDGAIRM 254 (257)
T ss_dssp --CHHHHHHHHHTSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEE--EESTTC--
T ss_pred hccHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhcC--CCCCCCEE--EECCCccC
Confidence 42 226899999999999976 79999999 78888754
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=247.01 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=142.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-------HHHHHHHHHhc--------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-------GAEAVQVLKDR-------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-------~~~~~~~l~~~-------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.++ +++..+++...
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARD-GANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 5789999999999999999999999999 8999999998642 33333322211
Q ss_pred ------------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchH
Q psy8786 235 ------------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNL 288 (484)
Q Consensus 235 ------------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~ 288 (484)
+ ......++|+.++++|+.|++.++++++|+|++ .|+||++||..+.......
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~- 159 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWG- 159 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHH-
T ss_pred HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCC-
Confidence 1 112345899999999999999999999999965 4899999999884331000
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC-cccCCC
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG-YVATNM 367 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG-~V~T~m 367 (484)
+...|++||+|+++|+++++.|++++ |||||+|+|| .++|++
T Consensus 160 ---------------------------------~~~~Y~asKaal~~l~~~la~e~~~~----gI~vn~v~PG~~v~T~~ 202 (274)
T 3e03_A 160 ---------------------------------AHTGYTLAKMGMSLVTLGLAAEFGPQ----GVAINALWPRTVIATDA 202 (274)
T ss_dssp ---------------------------------HCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEECSBCBCC--
T ss_pred ---------------------------------CCchHHHHHHHHHHHHHHHHHHhhhc----CEEEEEEECCcccccch
Confidence 01789999999999999999999988 9999999999 699998
Q ss_pred ccCCC------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 368 SSFMG------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 368 ~~~~~------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
..... ..+|+|+|+.++||+++.+.++||+.+
T Consensus 203 ~~~~~~~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i 240 (274)
T 3e03_A 203 INMLPGVDAAACRRPEIMADAAHAVLTREAAGFHGQFL 240 (274)
T ss_dssp -----CCCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEE
T ss_pred hhhcccccccccCCHHHHHHHHHHHhCccccccCCeEE
Confidence 75432 268999999999999999999999987
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=248.69 Aligned_cols=180 Identities=18% Similarity=0.166 Sum_probs=147.8
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh---------------------------
Q psy8786 183 DPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------------------------- 233 (484)
Q Consensus 183 ~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------------------------- 233 (484)
+|+||++|||||+ +|||+++|++|+++ |++|++++|+.+ .++..+++..
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 80 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 4689999999999 99999999999999 899999999875 2222222211
Q ss_pred c-----------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHH
Q psy8786 234 R-----------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELK 291 (484)
Q Consensus 234 ~-----------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~ 291 (484)
. +.. ..+.++|+..+++|+.|++.++++++|.|+++|+||++||.++.. .+.
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 154 (275)
T 2pd4_A 81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAH------ 154 (275)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT------
T ss_pred HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCC------
Confidence 0 111 224588999999999999999999999998779999999987742 222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 155 -------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~ 199 (275)
T 2pd4_A 155 -------------------------------YNVMGLAKAALESAVRYLAVDLGKH----HIRVNALSAGPIRTLASSGI 199 (275)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCTTGGGS
T ss_pred -------------------------------chhhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCccccchhhhc
Confidence 2789999999999999999999887 99999999999999986532
Q ss_pred C-----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 G-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
. ..+|+|+|+.++||+++.+.+++|+.+ .++|++
T Consensus 200 ~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~--~vdgg~ 250 (275)
T 2pd4_A 200 ADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVH--FVDAGY 250 (275)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTG
T ss_pred cccHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCccccCCCCCEE--EECCCc
Confidence 1 268999999999999999999999988 566665
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=244.47 Aligned_cols=178 Identities=12% Similarity=0.016 Sum_probs=139.7
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|+++++||++|||||++|||+++|++|+++ |++|++++|+.++++++.+++...
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAE-GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAAD 79 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999 899999999988877776665431
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+ ....+.++|+.++++|+.|++.++++++|.|++ .|+||++||.++. +.+.
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 151 (252)
T 3h7a_A 80 AHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSG-------- 151 (252)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTT--------
T ss_pred hhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCC--------
Confidence 0 012345899999999999999999999999965 4899999999884 3222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEE-EEEeCCcccCCCccCCC
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI-NAVHPGYVATNMSSFMG 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrV-NaV~PG~V~T~m~~~~~ 372 (484)
...|++||+|+++|+++++.|++++ |||| |+|+||+|+|++.....
T Consensus 152 -----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~v~n~v~PG~v~T~~~~~~~ 198 (252)
T 3h7a_A 152 -----------------------------FAAFASAKFGLRAVAQSMARELMPK----NIHVAHLIIDSGVDTAWVRERR 198 (252)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEC------------
T ss_pred -----------------------------CccHHHHHHHHHHHHHHHHHHhhhc----CCEEEEEecCCccCChhhhccc
Confidence 2789999999999999999999988 9999 99999999999875431
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
..+|+|+|+.++||+++...+++|+..
T Consensus 199 ~~~~~~~~~~~~~~~~~pedvA~~~~~l~s~~~~~~~~~i~ 239 (252)
T 3h7a_A 199 EQMFGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFEME 239 (252)
T ss_dssp ---------------CCHHHHHHHHHHHHHCCGGGBCSEEE
T ss_pred hhhhhhhhhcCCccCCCHHHHHHHHHHHHhCchhcceeeEE
Confidence 278999999999999988888888865
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=243.55 Aligned_cols=185 Identities=22% Similarity=0.303 Sum_probs=150.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 16 RWSLKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999 899999999987766655544221
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
.......++|+..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------- 166 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP-------- 166 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT--------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCC--------
Confidence 0012245889999999999999999999999964 48999999998743211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 167 ----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~ 214 (273)
T 1ae1_A 167 ----------------------------SVSLYSASKGAINQMTKSLACEWAKD----NIRVNSVAPGVILTPLVETAIK 214 (273)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC---------
T ss_pred ----------------------------CcchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEEeCCCcCchhhhhhh
Confidence 12789999999999999999999987 99999999999999985421
Q ss_pred -------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 215 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~~ 268 (273)
T 1ae1_A 215 KNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQII--WADGGFT 268 (273)
T ss_dssp ----CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred cccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCCEE--EECCCcc
Confidence 1258999999999999999999999998 6788764
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-30 Score=253.29 Aligned_cols=185 Identities=20% Similarity=0.239 Sum_probs=155.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC---eEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG---YIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga---~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
.+|+||++|||||++|||+++|++|+++ |+ +|++++|+.++++++.+++...
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~-G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 107 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEA-SNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIE 107 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHH
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHc-CCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence 4578999999999999999999999998 66 9999999999888877766431
Q ss_pred ----------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchH
Q psy8786 235 ----------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 ----------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~ 288 (484)
+ ......++|+.++++|+.|++.++++++|.|++ .|+||++||.++. ..+.
T Consensus 108 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~--- 184 (287)
T 3rku_A 108 NLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPT--- 184 (287)
T ss_dssp TSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT---
T ss_pred HHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCC---
Confidence 1 112256899999999999999999999999964 5899999999884 3222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.
T Consensus 185 ----------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gIrvn~v~PG~v~T~~~ 226 (287)
T 3rku_A 185 ----------------------------------GSIYCASKFAVGAFTDSLRKELINT----KIRVILIAPGLVETEFS 226 (287)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHHHTTTS----SCEEEEEEESCEESSHH
T ss_pred ----------------------------------CchHHHHHHHHHHHHHHHHHHhhhc----CCEEEEEeCCcCcCccc
Confidence 2789999999999999999999877 99999999999999984
Q ss_pred cC---------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 369 SF---------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 369 ~~---------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
.. ..+.+|+|+|+.++||+++.+.+++|+.+ .++++...|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~pedvA~~v~~l~s~~~~~i~g~~i--~v~~g~~~p 281 (287)
T 3rku_A 227 LVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTL--IFPTNQASP 281 (287)
T ss_dssp HHHTTTCHHHHHHHHTTSCCEEHHHHHHHHHHHHTSCTTEEEEEEE--EEETTEEET
T ss_pred cccccCcHHHHHHhhcccCCCCHHHHHHHHHHHhCCCCCeEecceE--EeeCCCCCC
Confidence 21 12357899999999999999999999998 667666544
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=249.68 Aligned_cols=185 Identities=13% Similarity=0.131 Sum_probs=149.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-------hHHHHHHHHHhc-------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-------KGAEAVQVLKDR------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-------~~~~~~~~l~~~------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+ .+++..+++...
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 82 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAAD-GANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAA 82 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTT-TCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence 46789999999999999999999999999 899999999865 233333333221
Q ss_pred -------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccch
Q psy8786 235 -------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITN 287 (484)
Q Consensus 235 -------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~ 287 (484)
.......++|+.++++|+.|++.++++++|.|++ .++||++||..+......
T Consensus 83 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~- 161 (285)
T 3sc4_A 83 AVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWL- 161 (285)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGS-
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCC-
Confidence 1123456899999999999999999999999975 489999999887432211
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC-cccCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG-YVATN 366 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG-~V~T~ 366 (484)
+...|++||+|+++|+++++.|++++ |||||+|+|| .+.|+
T Consensus 162 ----------------------------------~~~~Y~asKaal~~~~~~la~e~~~~----gI~vn~v~PG~~v~t~ 203 (285)
T 3sc4_A 162 ----------------------------------RPTPYMMAKYGMTLCALGIAEELRDA----GIASNTLWPRTTVATA 203 (285)
T ss_dssp ----------------------------------CSHHHHHHHHHHHHHHHHHHHHTGGG----TCEEEEEECSSCBCCH
T ss_pred ----------------------------------CCchHHHHHHHHHHHHHHHHHHhccc----CcEEEEEeCCCccccH
Confidence 12789999999999999999999988 9999999999 68998
Q ss_pred CccCC--------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 367 MSSFM--------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 367 m~~~~--------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+.+.. ...+|+|+|+.++||+++.+ +++|+.+ .+++++.
T Consensus 204 ~~~~~~~~~~~~~r~~~pedvA~~~~~l~s~~~-~~tG~~i--~~dgg~~ 250 (285)
T 3sc4_A 204 AVQNLLGGDEAMARSRKPEVYADAAYVVLNKPS-SYTGNTL--LCEDVLL 250 (285)
T ss_dssp HHHHHHTSCCCCTTCBCTHHHHHHHHHHHTSCT-TCCSCEE--EHHHHHH
T ss_pred HHHhhccccccccCCCCHHHHHHHHHHHhCCcc-cccceEE--EEcCchh
Confidence 75432 23689999999999999988 9999998 5666653
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=245.90 Aligned_cols=184 Identities=17% Similarity=0.231 Sum_probs=148.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+ ++..++..++++..
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASM-GLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999 8999999995 44444433333221
Q ss_pred -------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+. .....++++..+++|+.|++.++++++|.|++ .++||++||..+. +.+.
T Consensus 103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 175 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMG------- 175 (271)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT-------
T ss_pred HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCC-------
Confidence 00 12245899999999999999999999999965 3899999998873 2222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|+|++.....
T Consensus 176 ------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~ 221 (271)
T 4iin_A 176 ------------------------------QTNYSASKGGMIAMSKSFAYEGALR----NIRFNSVTPGFIETDMNANLK 221 (271)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBCCC------
T ss_pred ------------------------------chHhHHHHHHHHHHHHHHHHHHHHh----CcEEEEEEeCcccCCchhhhc
Confidence 2789999999999999999999887 999999999999999865432
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+.+++|+.+ .+||++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i--~vdGG~~ 270 (271)
T 4iin_A 222 DELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETL--KVNGGLY 270 (271)
T ss_dssp ------CGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSC
T ss_pred HHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEE--EeCCCee
Confidence 158999999999999999999999999 6787763
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=241.46 Aligned_cols=183 Identities=18% Similarity=0.171 Sum_probs=150.9
Q ss_pred CCCCCCEEEEEcCC-chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGAN-KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGas-sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
++++||++|||||+ +|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLE-GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 56799999999997 69999999999999 899999999988877777766321
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +++||++||..+.....
T Consensus 97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------- 169 (266)
T 3o38_A 97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQH------- 169 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCT-------
T ss_pred HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCC-------
Confidence 1 012345899999999999999999999999974 47999999988742211
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.+...
T Consensus 170 -----------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~ 216 (266)
T 3o38_A 170 -----------------------------SQSHYAAAKAGVMALTRCSAIEAVEF----GVRINAVSPSIARHKFLEKTS 216 (266)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCC-------
T ss_pred -----------------------------CCchHHHHHHHHHHHHHHHHHHHHHc----CcEEEEEeCCcccchhhhccC
Confidence 12789999999999999999999988 999999999999999865431
Q ss_pred ----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.++||+++.+.+++|+.+ .++|++
T Consensus 217 ~~~~~~~~~~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i--~vdgG~ 265 (266)
T 3o38_A 217 SSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVV--SVSSQR 265 (266)
T ss_dssp ----------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESSCC
T ss_pred cHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCccccCccCCEE--EEcCCc
Confidence 168999999999999999999999999 677775
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-29 Score=240.55 Aligned_cols=180 Identities=23% Similarity=0.271 Sum_probs=150.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++||++|||||++|||+++|++|+++ |++|+++ +|+.++.++..+++...
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLAND-GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999 8888875 66666555544443321
Q ss_pred ----------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 ----------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 ----------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
+ ......++++.++++|+.|++.++++++|.|+++++||++||.++. +.+.
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 157 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPD------ 157 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTT------
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCC------
Confidence 0 0122458899999999999999999999999888999999999874 3222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 158 -------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~ 202 (255)
T 3icc_A 158 -------------------------------FIAYSMTKGAINTMTFTLAKQLGAR----GITVNAILPGFVKTDMNAEL 202 (255)
T ss_dssp -------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCCSSSTTT
T ss_pred -------------------------------cchhHHhHHHHHHHHHHHHHHHHhc----CeEEEEEEEeeecccchhhh
Confidence 2789999999999999999999987 99999999999999997654
Q ss_pred CC-----------------CCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 GN-----------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ~~-----------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
.. .+|+|+|+.+.||+++.+.+++|+.+ .+||++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i--~vdgG~ 253 (255)
T 3icc_A 203 LSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLI--DVSGGS 253 (255)
T ss_dssp TTSHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESSST
T ss_pred cccHHHHHhhhccCCcCCCCCHHHHHHHHHHHhCcccCCccCCEE--EecCCe
Confidence 21 58999999999999999999999999 677776
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-29 Score=240.03 Aligned_cols=180 Identities=25% Similarity=0.346 Sum_probs=150.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~---------------------------- 234 (484)
|+||++|||||++|||+++|++|+++ |++|++++| +++++++..+++...
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQ-GANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF 80 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999 899999999 776666555554321
Q ss_pred ----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||.++. +.+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (246)
T 2uvd_A 81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPG---------- 150 (246)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCC----------
Confidence 10 12245889999999999999999999999964 4899999998873 3222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|+|++.....
T Consensus 151 ---------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~ 199 (246)
T 2uvd_A 151 ---------------------------QANYVAAKAGVIGLTKTSAKELASR----NITVNAIAPGFIATDMTDVLDENI 199 (246)
T ss_dssp ---------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBGGGCSSCCCTTH
T ss_pred ---------------------------CchHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeccccCcchhhcCHHH
Confidence 2789999999999999999999987 999999999999999865321
Q ss_pred ------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.++||+++.+.+++|+.+ .++|++
T Consensus 200 ~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~--~vdgG~ 244 (246)
T 2uvd_A 200 KAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTL--NVDGGM 244 (246)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTS
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEE--EECcCc
Confidence 268999999999999999999999998 677775
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=242.88 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=144.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
++++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~~~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 2 SLEKQKGLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp ---CCCCEEEEESTTSHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHH
Confidence 46789999999999999999999999999 899999999988877766655320
Q ss_pred --------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHH
Q psy8786 235 --------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELK 291 (484)
Q Consensus 235 --------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~ 291 (484)
.......++|+..+++|+.|++.++++++|.|++ .|+||++||.++.. .+.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 154 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFAD------ 154 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CC------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCC------
Confidence 1113345889999999999999999999999864 58999999998843 222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++....
T Consensus 155 -------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~ 199 (250)
T 3nyw_A 155 -------------------------------GGIYGSTKFALLGLAESLYRELAPL----GIRVTTLCPGWVNTDMAKKA 199 (250)
T ss_dssp -------------------------------TTHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESSBCSHHHHHT
T ss_pred -------------------------------CcchHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCcccCchhhhc
Confidence 2789999999999999999999988 99999999999999986533
Q ss_pred C-------CCCHHhHHHHHHHHHhhhccc-ccccccccccccee
Q psy8786 372 G-------NVNIFDDSSTFNAFERVISHF-LIGQQINTFIPAIY 407 (484)
Q Consensus 372 ~-------~~~peevA~~~~~L~s~~a~~-itG~~i~~~~~g~~ 407 (484)
. ..+|+|+|+.++||+++.... +++..| .+||+-
T Consensus 200 ~~~~~~~~~~~p~dva~~v~~l~s~~~~~~~~~~~i--~vd~~~ 241 (250)
T 3nyw_A 200 GTPFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVF--EMKKSI 241 (250)
T ss_dssp TCCSCGGGSBCHHHHHHHHHHHHTSCTTEECCEEEE--EEHHHH
T ss_pred CCCcccccCCCHHHHHHHHHHHHcCCCceEeeEEEE--Eeeccc
Confidence 2 268999999999999976554 455555 455543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=239.70 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=144.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHH------------------------hc--
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLK------------------------DR-- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~------------------------~~-- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+. +++++..++.. +.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVE-GADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999 89999999987 55443211110 00
Q ss_pred ---------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 149 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIE------------ 149 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCS------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC------------
Confidence 10 11245889999999999999999999999865 48999999988743211
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-CCC----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS-FMG---- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~-~~~---- 372 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.. ...
T Consensus 150 ------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~ 201 (249)
T 2ew8_A 150 ------------------------AYTHYISTKAANIGFTRALASDLGKD----GITVNAIAPSLVRTATTEASALSAMF 201 (249)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCC--------------
T ss_pred ------------------------CchhHHHHHHHHHHHHHHHHHHHHhc----CcEEEEEecCcCcCccchhccccchh
Confidence 12789999999999999999999987 999999999999999865 210
Q ss_pred ------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+++++|+.+ .++|++.
T Consensus 202 ~~~~~~~~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~--~vdGG~~ 247 (249)
T 2ew8_A 202 DVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTL--AVDGGMV 247 (249)
T ss_dssp ----CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEE--EESSSCC
T ss_pred hHHHHhhCccCCCCCHHHHHHHHHHHcCcccCCCCCcEE--EECCCcc
Confidence 258999999999999999999999998 6777764
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=242.62 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=141.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH----------------------HHhc----
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV----------------------LKDR---- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~----------------------l~~~---- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.++..+..++ +.+.
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 100 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEH-GHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSL 100 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 36789999999999999999999999999 89999999987654332222 1111
Q ss_pred ------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 ------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 ------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
.......++|+..+++|+.|++.++++++|.|++. |+||++||.++.....
T Consensus 101 D~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~--------------- 165 (260)
T 3gem_A 101 RAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS--------------- 165 (260)
T ss_dssp SEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCS---------------
T ss_pred CEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC---------------
Confidence 11223458899999999999999999999999764 8999999988742211
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------- 372 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------- 372 (484)
+...|++||+|+++|+++++.|+++ +||||+|+||+|.|++.....
T Consensus 166 ---------------------~~~~Y~asKaa~~~l~~~la~e~~~-----~Irvn~v~PG~v~t~~~~~~~~~~~~~~~ 219 (260)
T 3gem_A 166 ---------------------KHIAYCATKAGLESLTLSFAARFAP-----LVKVNGIAPALLMFQPKDDAAYRANALAK 219 (260)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECTTCC---------------
T ss_pred ---------------------CcHhHHHHHHHHHHHHHHHHHHHCC-----CCEEEEEeecccccCCCCCHHHHHHHHhc
Confidence 1278999999999999999999864 599999999999998743211
Q ss_pred -----CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -----NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -----~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+ .+.+++|+.+ .+||++..
T Consensus 220 ~p~~r~~~~edva~~v~~L~--~~~~itG~~i--~vdGG~~~ 257 (260)
T 3gem_A 220 SALGIEPGAEVIYQSLRYLL--DSTYVTGTTL--TVNGGRHV 257 (260)
T ss_dssp CCSCCCCCTHHHHHHHHHHH--HCSSCCSCEE--EESTTTTT
T ss_pred CCCCCCCCHHHHHHHHHHHh--hCCCCCCCEE--EECCCccc
Confidence 158999999999998 5789999999 67888754
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=241.44 Aligned_cols=183 Identities=28% Similarity=0.365 Sum_probs=152.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH-Hh---c-----------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-KD---R----------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l-~~---~----------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++ .. .
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999 899999999987776665554 11 0
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCC-cc-ccccchHHHHH
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSA-GH-LSQITNLELKK 292 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~a-g~-~~~~~~~~~~~ 292 (484)
+. .....++|+.++++|+.|++.++++++|.|++ .++||++||.+ +. ..+.
T Consensus 96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------- 168 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN------- 168 (267)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS-------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCC-------
Confidence 10 11245889999999999999999999999965 37999999987 53 2222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 169 ------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~ 214 (267)
T 1vl8_A 169 ------------------------------ISAYAASKGGVASLTKALAKEWGRY----GIRVNVIAPGWYRTKMTEAVF 214 (267)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCSTTTHHHH
T ss_pred ------------------------------ChhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeccCccccccccc
Confidence 2789999999999999999999988 99999999999999985421
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 215 ~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~itG~~i--~vdGG~~ 265 (267)
T 1vl8_A 215 SDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQII--FVDGGWT 265 (267)
T ss_dssp TCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred cChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCcCCeE--EECCCCC
Confidence 1268999999999999999999999998 6788764
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=242.88 Aligned_cols=184 Identities=20% Similarity=0.170 Sum_probs=151.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----c---------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----R--------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----~--------------------- 234 (484)
..+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 8 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 86 (267)
T 1iy8_A 8 TTRFTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT 86 (267)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 35679999999999999999999999999 89999999998776665554421 0
Q ss_pred --------------CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHH
Q psy8786 235 --------------AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLEL 290 (484)
Q Consensus 235 --------------~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~ 290 (484)
+.. ....++|+..+++|+.|++.++++++|.|++ .++||++||.++.. .+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 161 (267)
T 1iy8_A 87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGN----- 161 (267)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSS-----
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCC-----
Confidence 111 1235889999999999999999999999964 48999999998742 222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 162 --------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~ 205 (267)
T 1iy8_A 162 --------------------------------QSGYAAAKHGVVGLTRNSAVEYGRY----GIRINAIAPGAIWTPMVEN 205 (267)
T ss_dssp --------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSHHHHH
T ss_pred --------------------------------CccHHHHHHHHHHHHHHHHHHHHhc----CeEEEEEEeCCCcCcchhc
Confidence 2789999999999999999999987 9999999999999987421
Q ss_pred C-----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 M-----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ~-----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~~ 264 (267)
T 1iy8_A 206 SMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVV--PIDGGQS 264 (267)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTTT
T ss_pred cccccChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCCCCCEE--EECCCcc
Confidence 0 1258999999999999999999999998 6787764
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=241.09 Aligned_cols=186 Identities=20% Similarity=0.295 Sum_probs=153.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~~l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 4 RWNLEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999 899999999987766655544321
Q ss_pred -------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 154 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVP-------- 154 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCT--------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC--------
Confidence 00 01235789999999999999999999999865 37999999988742211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+++|++....
T Consensus 155 ----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~ 202 (260)
T 2ae2_A 155 ----------------------------YEAVYGATKGAMDQLTRCLAFEWAKD----NIRVNGVGPGVIATSLVEMTIQ 202 (260)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEECSBCSHHHHHHTT
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEecCCCCCcchhhhcc
Confidence 12789999999999999999999987 99999999999999874210
Q ss_pred ------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~--~vdgG~~~ 256 (260)
T 2ae2_A 203 DPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQII--YVDGGLMA 256 (260)
T ss_dssp SHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred ChhhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCCCCEE--EECCCccc
Confidence 1268999999999999999999999998 67877643
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=242.33 Aligned_cols=183 Identities=25% Similarity=0.326 Sum_probs=151.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 25 ~~l~~k~vlVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 25 FSLAGRIALVTGGSRGIGQMIAQGLLEA-GARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS 103 (276)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999 899999999987766655544210
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--C----CEEEEEeCCCccccccchHHHHH
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--H----ARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~----grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
+ ......++|+..+++|+.|++.++++++|.|++ . ++||++||.++......
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~------ 177 (276)
T 2b4q_A 104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGE------ 177 (276)
T ss_dssp SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCC------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCC------
Confidence 0 112345889999999999999999999999864 2 79999999887422111
Q ss_pred HHhhccccccccccccccCCCcccccCCCCCh-hhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDS-AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF- 370 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~- 370 (484)
.. .|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 178 ------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~ 223 (276)
T 2b4q_A 178 ------------------------------QAYAYGPSKAALHQLSRMLAKELVGE----HINVNVIAPGRFPSRMTRHI 223 (276)
T ss_dssp ------------------------------SCTTHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCSTTTHHH
T ss_pred ------------------------------CccccHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeccCcCcchhhc
Confidence 14 89999999999999999999987 9999999999999998532
Q ss_pred -------------C---CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 -------------M---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 -------------~---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
. ...+|+|+|+.++||+++.+.+++|+.+ .+||++
T Consensus 224 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~ 274 (276)
T 2b4q_A 224 ANDPQALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVI--PIDGGF 274 (276)
T ss_dssp HHCHHHHHHHHHTSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTT
T ss_pred chhHHHHHHhhcCCCCCCcCCHHHHHHHHHHHhCccccCCCCCEE--EeCCCc
Confidence 1 1268999999999999999999999998 677765
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=237.93 Aligned_cols=176 Identities=17% Similarity=0.118 Sum_probs=144.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 80 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVER-GHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcE
Confidence 5799999999999999999999999 899999999988777665554221
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhccccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~ 301 (484)
.....+.++|+.++++|+.|++.++++++|.|++ +++||++||.++. +.+..
T Consensus 81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~--------------- 145 (235)
T 3l6e_A 81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKANE--------------- 145 (235)
T ss_dssp EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCSSH---------------
T ss_pred EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCCCC---------------
Confidence 1113356899999999999999999999999965 4699999998884 32222
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------CCC
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------NVN 375 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------~~~ 375 (484)
..|++||+|+++|+++++.|++++ |||||+|+||+|+|++..... ..+
T Consensus 146 ----------------------~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 199 (235)
T 3l6e_A 146 ----------------------SLYCASKWGMRGFLESLRAELKDS----PLRLVNLYPSGIRSEFWDNTDHVDPSGFMT 199 (235)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHTTTS----SEEEEEEEEEEECCCC-----------CBC
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHHHhhcc----CCEEEEEeCCCccCcchhccCCCCCcCCCC
Confidence 789999999999999999999877 999999999999999976432 379
Q ss_pred HHhHHHHHHHHHh-hhcccccccccccc
Q psy8786 376 IFDDSSTFNAFER-VISHFLIGQQINTF 402 (484)
Q Consensus 376 peevA~~~~~L~s-~~a~~itG~~i~~~ 402 (484)
|+|+|+.++|+++ +.+.+++|-.+.+.
T Consensus 200 pedvA~~v~~l~~~~~~~~i~~i~~~~~ 227 (235)
T 3l6e_A 200 PEDAAAYMLDALEARSSCHVTDLFIGRN 227 (235)
T ss_dssp HHHHHHHHHHHTCCCSSEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCcceeeEEEecC
Confidence 9999999999998 67778888776543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=238.25 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=149.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH----------------------Hhc------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL----------------------KDR------ 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l----------------------~~~------ 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++ .+.
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 80 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG 80 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999999 899999999877655433221 110
Q ss_pred -----CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -----AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||.+..+.+.
T Consensus 81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------------- 144 (245)
T 1uls_A 81 VVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNLG---------------- 144 (245)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCTT----------------
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCCCC----------------
Confidence 10 11245889999999999999999999999965 37999999987222111
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--------- 372 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--------- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 145 ---------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 199 (245)
T 1uls_A 145 ---------------------QANYAASMAGVVGLTRTLALELGRW----GIRVNTLAPGFIETRMTAKVPEKVREKAIA 199 (245)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTTSSSCHHHHHHHHH
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHhHh----CeEEEEEEeCcCcCcchhhcCHHHHHHHHh
Confidence 2789999999999999999999987 999999999999999865321
Q ss_pred ------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 200 ~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~--~vdgG~~ 239 (245)
T 1uls_A 200 ATPLGRAGKPLEVAYAALFLLSDESSFITGQVL--FVDGGRT 239 (245)
T ss_dssp TCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred hCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEE--EECCCcc
Confidence 268999999999999999999999998 6788764
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=248.84 Aligned_cols=183 Identities=17% Similarity=0.146 Sum_probs=152.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC----------chhHHHHHHHHHhc-----------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD----------KKKGAEAVQVLKDR----------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~----------~~~~~~~~~~l~~~----------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+ .+.+++..+++...
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 3579999999999999999999999999 8999999987 55555555554321
Q ss_pred ---------------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCC
Q psy8786 235 ---------------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSA 279 (484)
Q Consensus 235 ---------------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~a 279 (484)
+. ...+.++|+..+++|+.|++.+++++.+.|++ +|+||++||.+
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 10 12345899999999999999999999998864 27999999988
Q ss_pred cc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEE
Q psy8786 280 GH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAV 358 (484)
Q Consensus 280 g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV 358 (484)
+. +.+. ...|++||+|+++|+++++.|++++ ||+||+|
T Consensus 182 ~~~~~~~-------------------------------------~~~Y~asKaal~~l~~~la~e~~~~----gI~vn~v 220 (322)
T 3qlj_A 182 GLQGSVG-------------------------------------QGNYSAAKAGIATLTLVGAAEMGRY----GVTVNAI 220 (322)
T ss_dssp HHHCBTT-------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEE
T ss_pred HccCCCC-------------------------------------CccHHHHHHHHHHHHHHHHHHhccc----CcEEEEe
Confidence 73 3222 2789999999999999999999988 9999999
Q ss_pred eCCcccCCCccCCC------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 359 HPGYVATNMSSFMG------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 359 ~PG~V~T~m~~~~~------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+|| +.|++..... ..+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 221 ~PG-~~t~~~~~~~~~~~~~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i--~vdGG~~~ 280 (322)
T 3qlj_A 221 APS-ARTRMTETVFAEMMATQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVF--EVEGGKIR 280 (322)
T ss_dssp EEC-TTSCCSCCSCCC--------CCTTCGGGTHHHHHHHTSGGGGGCCSCEE--EEETTEEE
T ss_pred cCC-CCCccchhhhhhhhhccccccCCCCHHHHHHHHHHHhCccccCCCCCEE--EECCCccc
Confidence 999 9999875432 258999999999999999999999999 67887754
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=248.80 Aligned_cols=193 Identities=26% Similarity=0.255 Sum_probs=146.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~ 89 (291)
T 3rd5_A 11 LPSFAQRTVVITGANSGLGAVTARELARR-GATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADV 89 (291)
T ss_dssp CCCCTTCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 35789999999999999999999999999 899999999988776654433111
Q ss_pred -----C----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -----A----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -----~----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+ ....+.++++.++++|+.|++.++++++|.|++ +||++||.++........+.
T Consensus 90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--riv~isS~~~~~~~~~~~~~--------------- 152 (291)
T 3rd5_A 90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD--RVVTVSSMAHWPGRINLEDL--------------- 152 (291)
T ss_dssp EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE--EEEEECCGGGTTCCCCSSCT---------------
T ss_pred EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--heeEeechhhccCCCCcccc---------------
Confidence 1 112345788999999999999999999999974 99999998874322110000
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCC--eEEEEEeCCcccCCCccCCCC----------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQD--KVINAVHPGYVATNMSSFMGN---------- 373 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~g--IrVNaV~PG~V~T~m~~~~~~---------- 373 (484)
.... ....+...|++||+|+++|++.+++|++++ | |+||+|+||+|+|++.+....
T Consensus 153 ------~~~~--~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~----g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 220 (291)
T 3rd5_A 153 ------NWRS--RRYSPWLAYSQSKLANLLFTSELQRRLTAA----GSPLRALAAHPGYSHTNLQGASGRKLGDALMSAA 220 (291)
T ss_dssp ------TCSS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCEEEEECCSGGGSCC----------------
T ss_pred ------cccc--cCCCCcchHHHHHHHHHHHHHHHHHHHhhC----CCCEEEEEeeCCCCccccccccchHHHHHHHHHH
Confidence 0000 001123789999999999999999999987 6 999999999999999875421
Q ss_pred -----CCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 374 -----VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 374 -----~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
.+|+|+|+.++|++++ .+++|+.+ .+||++
T Consensus 221 ~~~~~~~~~~~A~~~~~l~~~--~~~~G~~~--~vdgG~ 255 (291)
T 3rd5_A 221 TRVVATDADFGARQTLYAASQ--DLPGDSFV--GPRFGY 255 (291)
T ss_dssp ----CHHHHHHHHHHHHHHHS--CCCTTCEE--EETTSS
T ss_pred HHHHhCCHHHHHHHHHHHHcC--CCCCCcee--CCcccc
Confidence 2499999999999988 48999988 566665
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=240.90 Aligned_cols=181 Identities=19% Similarity=0.115 Sum_probs=149.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-----------------hHHHHHHHHHhc-------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-----------------KGAEAVQVLKDR------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-----------------~~~~~~~~l~~~------------- 234 (484)
++|++|||||++|||+++|++|++++|++|++++|+++ ..+++.+.++..
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nAg~~~ 82 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAGILI 82 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccceEEecCcCCHHHHHHHHHHHHhCCCCEEEECCccCC
Confidence 67999999999999999999999944888999888654 122333222210
Q ss_pred --CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 --ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 --~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
.....+.++|+.++++|+.|++.++++++|.|+++++||++||..+. ..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-------------------------- 136 (244)
T 4e4y_A 83 KGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPN-------------------------- 136 (244)
T ss_dssp CBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTT--------------------------
T ss_pred CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCC--------------------------
Confidence 11234568999999999999999999999999888999999999874 3222
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------------
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------------- 371 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------------- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 137 -----------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (244)
T 4e4y_A 137 -----------SFAYTLSKGAIAQMTKSLALDLAKY----QIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEE 201 (244)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred -----------CchhHHHHHHHHHHHHHHHHHHHHc----CeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHh
Confidence 2789999999999999999999988 99999999999999975321
Q ss_pred ------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 202 ~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i--~vdGG~~ 242 (244)
T 4e4y_A 202 KEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLI--PIDGGYT 242 (244)
T ss_dssp TTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred hcCCCCCCcCHHHHHHHHHHHhcCccccccCCeE--eECCCcc
Confidence 1268999999999999999999999999 7788874
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=242.71 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=149.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHH----------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLK---------------------------- 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~---------------------------- 232 (484)
++|+||++|||||++|||+++|++|+++ |++|++++ |+.++++++.+++.
T Consensus 5 ~~l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (291)
T 1e7w_A 5 TAPTVPVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS 83 (291)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccc
Confidence 4678999999999999999999999999 89999999 98776655544432
Q ss_pred -----------------hc-----------C------CCCcc--------------HHHHHHHHHhhhHHHHHHHHHHHH
Q psy8786 233 -----------------DR-----------A------STVPF--------------AIQAEKTILTNYLGLVRTCVFLFP 264 (484)
Q Consensus 233 -----------------~~-----------~------~~~~~--------------~~~~~~~~~vN~~g~~~l~~allp 264 (484)
+. + ..... .++|+..+++|+.|++.++++++|
T Consensus 84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 163 (291)
T 1e7w_A 84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 163 (291)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 00 0 01123 678999999999999999999999
Q ss_pred hhhc--------CCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHH
Q psy8786 265 LLRR--------HARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNL 335 (484)
Q Consensus 265 ~l~~--------~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~ 335 (484)
.|++ .++||++||..+.. .+. ...|++||+|+++
T Consensus 164 ~m~~~~~~~~~~~g~Iv~isS~~~~~~~~~-------------------------------------~~~Y~asKaa~~~ 206 (291)
T 1e7w_A 164 RVAGTPAKHRGTNYSIINMVDAMTNQPLLG-------------------------------------YTIYTMAKGALEG 206 (291)
T ss_dssp HHHTSCGGGSCSCEEEEEECCTTTTSCCTT-------------------------------------CHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCcEEEEEechhhcCCCCC-------------------------------------CchhHHHHHHHHH
Confidence 9964 47999999998843 222 2789999999999
Q ss_pred HHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-------------C--CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 336 LTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-------------M--GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 336 lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-------------~--~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
|+++++.|++++ ||+||+|+||+|+|+| .. . ...+|+|+|+.++||+++.+.+++|+.+
T Consensus 207 l~~~la~e~~~~----gI~vn~v~PG~v~T~~-~~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i- 280 (291)
T 1e7w_A 207 LTRSAALELAPL----QIRVNGVGPGLSVLVD-DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV- 280 (291)
T ss_dssp HHHHHHHHHGGG----TEEEEEEEESSBCCGG-GSCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE-
T ss_pred HHHHHHHHHHhc----CeEEEEEeeCCccCCc-cCCHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEE-
Confidence 999999999987 9999999999999998 30 1 2358999999999999999999999998
Q ss_pred ccccceeec
Q psy8786 401 TFIPAIYTV 409 (484)
Q Consensus 401 ~~~~g~~~~ 409 (484)
.+||++..
T Consensus 281 -~vdGG~~~ 288 (291)
T 1e7w_A 281 -KVDGGYSL 288 (291)
T ss_dssp -EESTTGGG
T ss_pred -EECCCccc
Confidence 77888753
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=239.33 Aligned_cols=183 Identities=18% Similarity=0.205 Sum_probs=134.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
+++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALARE-GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 899999999988877776665432
Q ss_pred ------------CC---------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHH
Q psy8786 235 ------------AS---------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 ------------~~---------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
+. .....++++..+++|+.|++.++++++|.|++ .++||++||.+++..
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 154 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLY-------- 154 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccCC--------
Confidence 11 12356899999999999999999999999964 489999999887521
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 155 -------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~ 199 (253)
T 3qiv_A 155 -------------------------------SNYYGLAKVGINGLTQQLSRELGGR----NIRINAIAPGPIDTEANRTT 199 (253)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHTTTT----TEEEEEEEC-----------
T ss_pred -------------------------------CchhHHHHHHHHHHHHHHHHHHhhc----CeEEEEEEecCCcccchhhc
Confidence 1679999999999999999999877 99999999999999986543
Q ss_pred C----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 G----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ~----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. ..+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~--~vdgG~~~ 251 (253)
T 3qiv_A 200 TPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIF--NVDGGQII 251 (253)
T ss_dssp --------------------CCHHHHHHHHHHSGGGTTCCSCEE--EC------
T ss_pred CcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCccccCCCCCEE--EECCCeec
Confidence 1 157999999999999999999999999 67777643
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=241.21 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=150.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999987776665555321
Q ss_pred -----------CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 -----------AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 -----------~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+.. ....++|+..+++|+.|++.++++++|.|++ .++||++||..+. ..+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 153 (262)
T 1zem_A 82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPN-------- 153 (262)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTT--------
T ss_pred hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCC--------
Confidence 111 1245889999999999999999999999865 4899999998773 2222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--- 370 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--- 370 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++...
T Consensus 154 -----------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~ 200 (262)
T 1zem_A 154 -----------------------------MAAYGTSKGAIIALTETAALDLAPY----NIRVNAISPGYMGPGFMWERQV 200 (262)
T ss_dssp -----------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSSHHHHHHH
T ss_pred -----------------------------CchHHHHHHHHHHHHHHHHHHHHhh----CeEEEEEecCCcCcchhhhhcc
Confidence 2789999999999999999999987 9999999999999997422
Q ss_pred ----------C------------------CCCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 371 ----------M------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 371 ----------~------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
. +..+|+|+|+.++||+++.+++++|+.+ .+||+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i--~vdGG 262 (262)
T 1zem_A 201 ELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNL--PIAGG 262 (262)
T ss_dssp HHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE--EESCC
T ss_pred chhhhccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCcEE--ecCCC
Confidence 0 1258999999999999999999999998 55553
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=237.91 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=146.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l 88 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKL-GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDIL 88 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 4568999999999999999999999999 899999999988877766655321
Q ss_pred ----C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 ----A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ----~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+ ......++++..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 89 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------- 151 (249)
T 3f9i_A 89 VCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP----------------- 151 (249)
T ss_dssp EECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS-----------------
T ss_pred EECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC-----------------
Confidence 0 012234778999999999999999999999854 48999999998843221
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----------
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---------- 372 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---------- 372 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 152 -------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 208 (249)
T 3f9i_A 152 -------------------GQANYCASKAGLIGMTKSLSYEVATR----GITVNAVAPGFIKSDMTDKLNEKQREAIVQK 208 (249)
T ss_dssp -------------------CSHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBC------CCHHHHHHHHHH
T ss_pred -------------------CCchhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEecCccccCcccccCHHHHHHHHhc
Confidence 12789999999999999999999987 999999999999999876542
Q ss_pred -----CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -----NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -----~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+.+++|+.+ .++|++.
T Consensus 209 ~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~--~vdgG~~ 247 (249)
T 3f9i_A 209 IPLGTYGIPEDVAYAVAFLASNNASYITGQTL--HVNGGML 247 (249)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSS
T ss_pred CCCCCCcCHHHHHHHHHHHcCCccCCccCcEE--EECCCEe
Confidence 157999999999999999999999999 6777763
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=240.92 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=149.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~~~~~~l~~~-------------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.++ .++..+++...
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 8999999998653 33333333210
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+. .....++|+..+++|+.|++++++++++.|++.++||++||..+......
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 173 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP---------- 173 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCC----------
Confidence 11 11246899999999999999999999999976799999999887422110
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC------
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------ 370 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------ 370 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 174 -------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~ 224 (283)
T 1g0o_A 174 -------------------------KHAVYSGSKGAIETFARCMAIDMADK----KITVNVVAPGGIKTDMYHAVCREYI 224 (283)
T ss_dssp -------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBSSHHHHHHGGGGS
T ss_pred -------------------------CCcchHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCcccchhhhhhhhhcc
Confidence 12789999999999999999999987 9999999999999986321
Q ss_pred ------------------C----CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 ------------------M----GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 ------------------~----~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
. ...+|+|+|+.++||+++.+++++|+.+ .+||++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i--~vdgG~ 281 (283)
T 1g0o_A 225 PNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVI--GIDGGA 281 (283)
T ss_dssp TTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC
T ss_pred ccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEE--EeCCCc
Confidence 1 1258999999999999999999999998 677776
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=250.58 Aligned_cols=181 Identities=14% Similarity=0.241 Sum_probs=149.9
Q ss_pred CCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCc-----------------------------------------
Q psy8786 185 SERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDK----------------------------------------- 221 (484)
Q Consensus 185 ~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~----------------------------------------- 221 (484)
++|++|||||++ |||+++|++|+++ |++|++++|++
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~-G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 79 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKR-NVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHC-CCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccch
Confidence 369999999986 9999999999999 89999776432
Q ss_pred h------------------hHHHHHHHHHhc-----------CC----C----CccHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8786 222 K------------------KGAEAVQVLKDR-----------AS----T----VPFAIQAEKTILTNYLGLVRTCVFLFP 264 (484)
Q Consensus 222 ~------------------~~~~~~~~l~~~-----------~~----~----~~~~~~~~~~~~vN~~g~~~l~~allp 264 (484)
+ ..+++++++.+. +. . ....++|+.++++|+.|++.++++++|
T Consensus 80 ~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p 159 (329)
T 3lt0_A 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 334455554432 11 1 124589999999999999999999999
Q ss_pred hhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh-hhHHhHHHHHHHHHHHHH
Q psy8786 265 LLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS-AYAVSKIGVNLLTRIYQK 342 (484)
Q Consensus 265 ~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~aSKaAl~~lt~~LA~ 342 (484)
+|+++|+||++||.++. ..+.. . .|++||+|+.+|+++|+.
T Consensus 160 ~m~~~g~Iv~isS~~~~~~~~~~-------------------------------------~~~Y~asKaal~~~~~~la~ 202 (329)
T 3lt0_A 160 IMKPQSSIISLTYHASQKVVPGY-------------------------------------GGGMSSAKAALESDTRVLAY 202 (329)
T ss_dssp GEEEEEEEEEEECGGGTSCCTTC-------------------------------------TTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCeEEEEeCccccCCCCcc-------------------------------------hHHHHHHHHHHHHHHHHHHH
Confidence 99888999999999884 32221 3 899999999999999999
Q ss_pred Hhhh-hcCCCCeEEEEEeCCcccCCCccCC--------------------------------------------------
Q psy8786 343 KFDC-ELGNQDKVINAVHPGYVATNMSSFM-------------------------------------------------- 371 (484)
Q Consensus 343 ela~-~~~~~gIrVNaV~PG~V~T~m~~~~-------------------------------------------------- 371 (484)
|+++ + ||+||+|+||+|+|+|....
T Consensus 203 el~~~~----gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (329)
T 3lt0_A 203 HLGRNY----NIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAI 278 (329)
T ss_dssp HHHHHH----CCEEEEEEECCCCCHHHHTCC------------------------------------------CHHHHHH
T ss_pred HhCCcc----CeEEEEEecceeechhHhhhhhhcccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHH
Confidence 9998 8 99999999999999986542
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+|+.+.++||+.| .+||++..
T Consensus 279 ~~~~~~~p~~r~~~peevA~~v~fL~s~~a~~itG~~i--~vdGG~~~ 324 (329)
T 3lt0_A 279 EYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTI--YVDNGLNI 324 (329)
T ss_dssp HHHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred HHHhhcCcccCcCCHHHHHHHHHHHhCchhccccCcEE--EEcCCeeE
Confidence 1268999999999999999999999999 78888865
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=241.00 Aligned_cols=180 Identities=18% Similarity=0.181 Sum_probs=146.1
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh---------------------------
Q psy8786 183 DPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------------------------- 233 (484)
Q Consensus 183 ~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------------------------- 233 (484)
+++||++|||||+ +|||+++|++|+++ |++|++++|+.+ .++..+++..
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHRE-GAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 3789999999999 99999999999999 899999999874 2222222211
Q ss_pred c-----------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhh-cCCEEEEEeCCCccc-cccchHHH
Q psy8786 234 R-----------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHL-SQITNLEL 290 (484)
Q Consensus 234 ~-----------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~-~~grIV~iSS~ag~~-~~~~~~~~ 290 (484)
. +.. ....++++..+++|+.|++.++++++|.|+ ++++||++||.++.. .+.
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 170 (285)
T 2p91_A 96 NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPH----- 170 (285)
T ss_dssp HTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTT-----
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCC-----
Confidence 0 111 224588999999999999999999999997 458999999987742 222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|+|++...
T Consensus 171 --------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~ 214 (285)
T 2p91_A 171 --------------------------------YNVMGIAKAALESTVRYLAYDIAKH----GHRINAISAGPVKTLAAYS 214 (285)
T ss_dssp --------------------------------TTHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCSCC--
T ss_pred --------------------------------ccHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEEeCcccCchhhc
Confidence 2689999999999999999999887 9999999999999998643
Q ss_pred CC-----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 MG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 ~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
.. ..+|+|+|+.++||+++.+.+++|+.+ .++|++
T Consensus 215 ~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~--~vdgg~ 266 (285)
T 2p91_A 215 ITGFHLLMEHTTKVNPFGKPITIEDVGDTAVFLCSDWARAITGEVV--HVDNGY 266 (285)
T ss_dssp CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTG
T ss_pred ccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCCCCEE--EECCCc
Confidence 21 268999999999999999999999988 567665
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=240.85 Aligned_cols=184 Identities=16% Similarity=0.112 Sum_probs=148.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHH----------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLK---------------------------- 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~---------------------------- 232 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+. ++++++.+++.
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 97 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQT-GYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEII 97 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHH-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHH
Confidence 5678999999999999999999999999 89999999997 65554444332
Q ss_pred ----hc-----------C------C-----CC-----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEE
Q psy8786 233 ----DR-----------A------S-----TV-----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVV 273 (484)
Q Consensus 233 ----~~-----------~------~-----~~-----~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV 273 (484)
+. + . .. ...++|+..+++|+.|++.++++++|.|++ .++||
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv 177 (288)
T 2x9g_A 98 NSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIV 177 (288)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEE
Confidence 00 1 0 12 445789999999999999999999999965 47999
Q ss_pred EEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCe
Q psy8786 274 NLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353 (484)
Q Consensus 274 ~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gI 353 (484)
++||.++..... +...|++||+|+++|+++++.|++++ ||
T Consensus 178 ~isS~~~~~~~~------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gI 217 (288)
T 2x9g_A 178 NLCDAMVDQPCM------------------------------------AFSLYNMGKHALVGLTQSAALELAPY----GI 217 (288)
T ss_dssp EECCTTTTSCCT------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TE
T ss_pred EEecccccCCCC------------------------------------CCchHHHHHHHHHHHHHHHHHHhhcc----Ce
Confidence 999998743211 12789999999999999999999987 99
Q ss_pred EEEEEeCCcccCCCccC--------------CCC-CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 354 VINAVHPGYVATNMSSF--------------MGN-VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 354 rVNaV~PG~V~T~m~~~--------------~~~-~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+||+|+||+|.|++ .. ... .+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 218 ~vn~v~PG~v~t~~-~~~~~~~~~~~~~~p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i--~vdGG~~~ 285 (288)
T 2x9g_A 218 RVNGVAPGVSLLPV-AMGEEEKDKWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSII--KVDGGLSL 285 (288)
T ss_dssp EEEEEEESSCSCCT-TSCHHHHHHHHHTCTTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred EEEEEEeccccCcc-ccChHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCCEE--EECcchhh
Confidence 99999999999998 21 112 68999999999999999999999998 67888754
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=242.25 Aligned_cols=183 Identities=21% Similarity=0.190 Sum_probs=151.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc----
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR---- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~---- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+++++++..+++. +.
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999 8999999999876655433221 00
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
.......++|+..+++|+.|++.++++++|.|++.++||++||..+.+.+..
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~--------------- 146 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGL--------------- 146 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHH---------------
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCCCCc---------------
Confidence 0112345889999999999999999999999944689999999988722211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
..|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 147 ----------------------~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 200 (263)
T 2a4k_A 147 ----------------------AHYAAGKLGVVGLARTLALELARK----GVRVNVLLPGLIQTPMTAGLPPWAWEQEVG 200 (263)
T ss_dssp ----------------------HHHHHCSSHHHHHHHHHHHHHTTT----TCEEEEEEECSBCCGGGTTSCHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEEeCcCcCchhhhcCHHHHHHHHh
Confidence 689999999999999999999877 99999999999999986532
Q ss_pred -----CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 201 ~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdgG~~~ 241 (263)
T 2a4k_A 201 ASPLGRAGRPEEVAQAALFLLSEESAYITGQAL--YVDGGRSI 241 (263)
T ss_dssp TSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhCccccCCcCCEE--EECCCccc
Confidence 1268999999999999999999999998 67887643
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=236.63 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=153.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 81 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGG 81 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999 899999999987666554443211
Q ss_pred --------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 235 --------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 --------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 148 (260)
T 1nff_A 82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV------------- 148 (260)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCC-------------
Confidence 1 112346899999999999999999999999965 48999999998742211
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-------- 370 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-------- 370 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|.|++...
T Consensus 149 -----------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~ 201 (260)
T 1nff_A 149 -----------------------ACHGYTATKFAVRGLTKSTALELGPS----GIRVNSIHPGLVKTPMTDWVPEDIFQT 201 (260)
T ss_dssp -----------------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCSGGGTTSCTTCSCC
T ss_pred -----------------------CchhHHHHHHHHHHHHHHHHHHhCcc----CcEEEEEEeCCCCCCccccchhhHHhC
Confidence 12789999999999999999999887 9999999999999998541
Q ss_pred --CCCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 --MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 --~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
....+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 202 ~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~--~v~gG~~~ 240 (260)
T 1nff_A 202 ALGRAAEPVEVSNLVVYLASDESSYSTGAEF--VVDGGTVA 240 (260)
T ss_dssp SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred ccCCCCCHHHHHHHHHHHhCccccCCcCCEE--EECCCeec
Confidence 01268999999999999999999999998 67777644
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=241.93 Aligned_cols=186 Identities=19% Similarity=0.151 Sum_probs=154.0
Q ss_pred CCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
.+.++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 23 ~~~~~l~~k~vlVTGas~GIG~aia~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 23 VTIKQFEGASAIVSGGAGGLGEATVRRLHAD-GLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp -CCGGGTTEEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred hhhhccCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3346789999999999999999999999999 899999999988777665554221
Q ss_pred --------C-C-------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCccccc
Q psy8786 235 --------A-S-------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGHLSQ 284 (484)
Q Consensus 235 --------~-~-------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~~~~ 284 (484)
. . .....++|+..+++|+.+++++++++++.+.+ .|+||++||.++....
T Consensus 102 ~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 181 (281)
T 3ppi_A 102 GRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQ 181 (281)
T ss_dssp SEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCC
T ss_pred CCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCC
Confidence 0 1 12345789999999999999999999999854 4799999999884322
Q ss_pred cchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 285 ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
.. ...|++||+|+++|+++++.|++++ ||+||+|+||+|+
T Consensus 182 ~~------------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~ 221 (281)
T 3ppi_A 182 IG------------------------------------QTAYAAAKAGVIGLTIAAARDLSSA----GIRVNTIAPGTMK 221 (281)
T ss_dssp TT------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred CC------------------------------------CcccHHHHHHHHHHHHHHHHHHhhc----CeEEEEEecCcCC
Confidence 11 2789999999999999999999988 9999999999999
Q ss_pred CCCccCC----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 365 TNMSSFM----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 365 T~m~~~~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
|++.... ...+|+|+|+.++||+++ .+++|+.+ .+||++..
T Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~--~~~tG~~i--~vdGG~~~ 278 (281)
T 3ppi_A 222 TPIMESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLLTN--GYINGEVM--RLDGAQRF 278 (281)
T ss_dssp CHHHHTTCHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHC--SSCCSCEE--EESTTCCC
T ss_pred chhhhcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHcC--CCcCCcEE--EECCCccc
Confidence 9986542 236899999999999974 79999999 77887643
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=239.36 Aligned_cols=184 Identities=15% Similarity=0.084 Sum_probs=152.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH----h-c---------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK----D-R--------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~----~-~--------------------- 234 (484)
+++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++. . .
T Consensus 2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 2 DLGIQGKLAVVTAGSSGLGFASALELARN-GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999 8999999999877666555442 1 1
Q ss_pred -------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 81 ~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 152 (260)
T 2z1n_A 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQ-------- 152 (260)
T ss_dssp HHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred HHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC--------
Confidence 00 11245789999999999999999999999864 38999999988743211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc----
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS---- 369 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~---- 369 (484)
+...|++||+|++++++.++.|++++ ||+||+|+||+|.|++..
T Consensus 153 ----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~ 200 (260)
T 2z1n_A 153 ----------------------------DLALSNIMRLPVIGVVRTLALELAPH----GVTVNAVLPSLILTDRVRSLAE 200 (260)
T ss_dssp ----------------------------TBHHHHHHTHHHHHHHHHHHHHHGGG----TEEEEEEEECHHHHCCCC----
T ss_pred ----------------------------CCchhHHHHHHHHHHHHHHHHHHhhh----CeEEEEEEECCcccchhhhhhh
Confidence 12789999999999999999999987 999999999999999865
Q ss_pred ------CCC----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 370 ------FMG----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 370 ------~~~----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
... ..+|+|+|+.++||+++.+++++|+.+ .++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i--~vdGG~ 258 (260)
T 2z1n_A 201 ERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKASFITGAVI--PVDGGA 258 (260)
T ss_dssp -------------------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTT
T ss_pred hhhcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCccccCCCCCEE--EeCCCc
Confidence 110 148999999999999999999999998 677775
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=237.35 Aligned_cols=185 Identities=18% Similarity=0.211 Sum_probs=153.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh----c----------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----R---------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~----~---------------------- 234 (484)
+++|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 2 DMGISGKVAVITGSSSGIGLAIAEGFAKE-GAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999 89999999998776665554421 0
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------- 152 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLW-------- 152 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCC--------
Confidence 1 112356899999999999999999999999864 48999999998743211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--- 370 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--- 370 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|.|++...
T Consensus 153 ----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~ 200 (263)
T 3ai3_A 153 ----------------------------YEPIYNVTKAALMMFSKTLATEVIKD----NIRVNCINPGLILTPDWIKTAK 200 (263)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCHHHHHHHH
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCcccCcchhhhhH
Confidence 12789999999999999999999887 9999999999999986321
Q ss_pred ---------------------C---CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 ---------------------M---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ---------------------~---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~--~vdgG~~ 260 (263)
T 3ai3_A 201 ELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCSERATYSVGSAY--FVDGGML 260 (263)
T ss_dssp HHTTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEE--EESTTCC
T ss_pred hhhcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCCCCcEE--EECCCcc
Confidence 1 1268999999999999999999999998 6777764
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=235.63 Aligned_cols=178 Identities=22% Similarity=0.191 Sum_probs=145.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
||++|||||++|||+++|++|+++| ++.|++++|+++++++..+++...
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 81 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS 81 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence 6999999999999999999999984 368889999988777665554321
Q ss_pred -----CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -----AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -----~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
+. ...+.++|+..+++|+.|++.++++++|+|++ +|+||++||.++.....
T Consensus 82 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~~~~---------------- 145 (254)
T 3kzv_A 82 LVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYFS---------------- 145 (254)
T ss_dssp EEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCCSSC----------------
T ss_pred EEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhccCCC----------------
Confidence 11 12356899999999999999999999999965 58999999998843211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--------- 372 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--------- 372 (484)
+...|++||+|+++|+++++.|+ . |||||+|+||+|+|++.....
T Consensus 146 --------------------~~~~Y~asK~a~~~~~~~la~e~--~----~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~ 199 (254)
T 3kzv_A 146 --------------------SWGAYGSSKAALNHFAMTLANEE--R----QVKAIAVAPGIVDTDMQVNIRENVGPSSMS 199 (254)
T ss_dssp --------------------CSHHHHHHHHHHHHHHHHHHHHC--T----TSEEEEEECSSCCCCCSCCCCCCCCTTTSC
T ss_pred --------------------CcchHHHHHHHHHHHHHHHHhhc--c----CcEEEEEeCCcccchhHHHhhcccCccccC
Confidence 12789999999999999999997 4 899999999999999975431
Q ss_pred ---------------CCCHHhHHHHHHHHHhhhc-ccccccccccccccee
Q psy8786 373 ---------------NVNIFDDSSTFNAFERVIS-HFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ---------------~~~peevA~~~~~L~s~~a-~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.++||+++.+ +++||+.+ .+||+.
T Consensus 200 ~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i--~vdg~~ 248 (254)
T 3kzv_A 200 AEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYL--SYNDPA 248 (254)
T ss_dssp HHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEE--ETTCGG
T ss_pred HHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEE--EecCcc
Confidence 1589999999999999994 99999998 455543
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=238.65 Aligned_cols=184 Identities=20% Similarity=0.207 Sum_probs=149.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++++|++|||||++|||+++|++|+++ |++|++++ |+.+..++..+++...
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKD-GFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHT-TEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 3458899999999999999999999999 89998877 5555444443333221
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
.....+.++++..+++|+.|++.++++++|.|++. ++||++||.++.....
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 158 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQF--------- 158 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCS---------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCC---------
Confidence 11233568999999999999999999999998653 8999999998742221
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.+...
T Consensus 159 ---------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~ 207 (256)
T 3ezl_A 159 ---------------------------GQTNYSTAKAGIHGFTMSLAQEVATK----GVTVNTVSPGYIGTDMVKAIRPD 207 (256)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHTSCHH
T ss_pred ---------------------------CCcccHHHHHHHHHHHHHHHHHHHHh----CCEEEEEEECcccCccccccCHH
Confidence 12789999999999999999999987 999999999999999876542
Q ss_pred -------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i--~vdgG~~ 254 (256)
T 3ezl_A 208 VLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADF--SLNGGLH 254 (256)
T ss_dssp HHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSC
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCcCcEE--EECCCEe
Confidence 258999999999999999999999999 6787764
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=237.52 Aligned_cols=182 Identities=21% Similarity=0.247 Sum_probs=147.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HHHHHHHHHh----c------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GAEAVQVLKD----R------------------------ 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~~~~~~l~~----~------------------------ 234 (484)
|+||++|||||++|||+++|++|+++ |++|++++|+.++ +++..+++.. .
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999 8999999999876 6655554421 0
Q ss_pred -----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 150 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA---------- 150 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCC----------
Confidence 10 11245889999999999999999999999964 48999999998742211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 151 --------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~ 200 (260)
T 1x1t_A 151 --------------------------NKSAYVAAKHGVVGFTKVTALETAGQ----GITANAICPGWVRTPLVEKQISAL 200 (260)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCBCC----------
T ss_pred --------------------------CCchHHHHHHHHHHHHHHHHHHhccC----CEEEEEEeecCccCchHHHhhhhh
Confidence 12789999999999999999999877 99999999999999985321
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~--~vdgG~~ 258 (260)
T 1x1t_A 201 AEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTV--SVDGGWT 258 (260)
T ss_dssp --------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred ccccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEE--EECCCcc
Confidence 1158999999999999999999999998 6777764
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=238.77 Aligned_cols=185 Identities=21% Similarity=0.219 Sum_probs=149.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----------------HHHHHHHHHhc----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----------------GAEAVQVLKDR---------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----------------~~~~~~~l~~~---------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+. .+++++++.+.
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~n 88 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRY-GAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNN 88 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4578999999999999999999999999 8999999886532 23344443322
Q ss_pred -C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .|+||++||.++......
T Consensus 89 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------------- 149 (269)
T 3vtz_A 89 AGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKN------------------- 149 (269)
T ss_dssp CCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTT-------------------
T ss_pred CCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCC-------------------
Confidence 1 112345889999999999999999999999864 589999999988432211
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------- 371 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------- 371 (484)
...|++||+|+++|+++++.|+++ ||+||+|+||+|+|++....
T Consensus 150 -----------------~~~Y~asKaa~~~l~~~la~e~~~-----~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 207 (269)
T 3vtz_A 150 -----------------AAAYVTSKHALLGLTRSVAIDYAP-----KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVER 207 (269)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHTT-----TEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHH
T ss_pred -----------------ChhHHHHHHHHHHHHHHHHHHhcC-----CCEEEEEEECCCcCcchhhhhhccccccchhhHH
Confidence 278999999999999999999864 69999999999999975211
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
...+|+|+|+.++||+++.+.++||+.+ .+||++...
T Consensus 208 ~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i--~vdGG~~~~ 256 (269)
T 3vtz_A 208 KIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACL--TVDGGLLSK 256 (269)
T ss_dssp HHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGGB
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCccCCCcCcEE--EECCCcccc
Confidence 1258999999999999999999999999 788887643
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=236.65 Aligned_cols=184 Identities=18% Similarity=0.213 Sum_probs=152.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQD-GAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999987766655444321
Q ss_pred -----------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||.+++....
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 159 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFP--------- 159 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT---------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCC---------
Confidence 11 01235789999999999999999999999965 37999999988743211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|.|++....
T Consensus 160 ---------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 208 (260)
T 2zat_A 160 ---------------------------NLGPYNVSKTALLGLTKNLAVELAPR----NIRVNCLAPGLIKTNFSQVLWMD 208 (260)
T ss_dssp ---------------------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSSTTHHHHSS
T ss_pred ---------------------------CchhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEECcccCccchhcccC
Confidence 12789999999999999999999987 99999999999999985320
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+.||+++.+++++|+.+ .++|++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~--~vdgG~~ 257 (260)
T 2zat_A 209 KARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETV--VVGGGTA 257 (260)
T ss_dssp HHHHHHHHHHHTCSSCBCGGGGHHHHHHHTSGGGTTCCSCEE--EESTTCC
T ss_pred hHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCCEE--EECCCcc
Confidence 1268999999999999999999999998 6777764
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=239.79 Aligned_cols=178 Identities=17% Similarity=0.244 Sum_probs=142.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
+.+|++|||||++|||+++|++|+++ |++|++++|+.++++++.+++...
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVA-GAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 899999999988887777666432
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHhh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~ 296 (484)
+ ......++|+.++++|+.|++.++++++|.|++ .|+||++||.++.. .+.
T Consensus 81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~----------- 149 (264)
T 3tfo_A 81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPT----------- 149 (264)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTT-----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCC-----------
Confidence 1 012245899999999999999999999999964 58999999998843 222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|++||+|+++|+++++.|+ . |||||+|+||+|+|++.....
T Consensus 150 --------------------------~~~Y~asKaal~~l~~~la~e~--~----gIrvn~v~PG~v~T~~~~~~~~~~~ 197 (264)
T 3tfo_A 150 --------------------------AAVYCATKFAVRAISDGLRQES--T----NIRVTCVNPGVVESELAGTITHEET 197 (264)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHC--S----SEEEEEEEECCC-------------
T ss_pred --------------------------ChhHHHHHHHHHHHHHHHHHhC--C----CCEEEEEecCCCcCcccccccchhH
Confidence 2789999999999999999986 2 899999999999999865321
Q ss_pred ----------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 ----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.++||+++...+.+|+.+ ..++++
T Consensus 198 ~~~~~~~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~--i~p~~~ 240 (264)
T 3tfo_A 198 MAAMDTYRAIALQPADIARAVRQVIEAPQSVDTTEIT--IRPTAS 240 (264)
T ss_dssp ----------CCCHHHHHHHHHHHHHSCTTEEEEEEE--EEECC-
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHhcCCccCccceEE--EecCcc
Confidence 268999999999999999999999987 455544
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=242.88 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=149.4
Q ss_pred CCCCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecCchhH-HH------------------------HHHHHHh-
Q psy8786 182 VDPSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARDKKKG-AE------------------------AVQVLKD- 233 (484)
Q Consensus 182 ~~L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~~~~~-~~------------------------~~~~l~~- 233 (484)
.+|+||++||||| ++|||+++|++|+++ |++|++++|+.++. ++ +++++.+
T Consensus 3 ~~l~~k~vlVTGa~~s~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (269)
T 2h7i_A 3 GLLDGKRILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA 81 (269)
T ss_dssp CTTTTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCchHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHH
Confidence 3578999999999 999999999999999 89999999986442 22 1222211
Q ss_pred -----c--------CCC-----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHH
Q psy8786 234 -----R--------AST-----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLE 289 (484)
Q Consensus 234 -----~--------~~~-----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~ 289 (484)
. +.. ....++|+..+++|+.|++.++++++|.|+++|+||++||..+...+.
T Consensus 82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~---- 157 (269)
T 2h7i_A 82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPA---- 157 (269)
T ss_dssp HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTT----
T ss_pred hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccccCc----
Confidence 1 111 123588999999999999999999999998889999999977533222
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++..
T Consensus 158 ---------------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~vn~v~PG~v~T~~~~ 200 (269)
T 2h7i_A 158 ---------------------------------YNWMTVAKSALESVNRFVAREAGKY----GVRSNLVAAGPIRTLAMS 200 (269)
T ss_dssp ---------------------------------THHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCHHHH
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEecCcccchhhh
Confidence 2789999999999999999999887 999999999999998632
Q ss_pred C--------------------------C--CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 370 F--------------------------M--GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 370 ~--------------------------~--~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. . ...+|+|+|+.++||+++.++++||+.+ .+||++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdGG~~~ 266 (269)
T 2h7i_A 201 AIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDII--YADGGAHT 266 (269)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEE--EESTTGGG
T ss_pred ccccccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHHhCchhccCcceEE--EecCCeee
Confidence 1 1 2368999999999999999999999999 78888743
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=238.41 Aligned_cols=183 Identities=21% Similarity=0.299 Sum_probs=150.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 368899999999999999999999999 899999999977665544332110
Q ss_pred -------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHhhcc
Q psy8786 235 -------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~ 298 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||.++.. .+.
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 147 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLAL------------- 147 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCC-------------
Confidence 11 12245889999999999999999999999965 48999999988742 222
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 148 ------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~ 199 (254)
T 1hdc_A 148 ------------------------TSSYGASKWGVRGLSKLAAVELGTD----RIRVNSVHPGMTYTPMTAETGIRQGEG 199 (254)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHTCCCSTT
T ss_pred ------------------------chhHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecccCcCccccccchhHHHH
Confidence 2789999999999999999999887 99999999999999874310
Q ss_pred --------CCC-CHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 --------GNV-NIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 --------~~~-~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
... +|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 200 ~~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~--~vdgG~~~ 244 (254)
T 1hdc_A 200 NYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAEL--AVDGGWTT 244 (254)
T ss_dssp SCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTT
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEE--EECCCccc
Confidence 115 8999999999999999999999998 67877643
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=241.49 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=150.0
Q ss_pred CCCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCc-------------------------------------
Q psy8786 181 SVDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDK------------------------------------- 221 (484)
Q Consensus 181 ~~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~------------------------------------- 221 (484)
.++|+||++|||||+ +|||+++|++|+++ |++|++++|++
T Consensus 3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T 1d7o_A 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred ccccCCCEEEEECCCCCCChHHHHHHHHHHC-CCeEEEeeccccchhhhhhhhhhHhhhhhhhcccccccccccccccee
Confidence 467899999999999 99999999999999 89999987431
Q ss_pred ----------------------hhHHHHHHHHHhc-----------CC--------CCccHHHHHHHHHhhhHHHHHHHH
Q psy8786 222 ----------------------KKGAEAVQVLKDR-----------AS--------TVPFAIQAEKTILTNYLGLVRTCV 260 (484)
Q Consensus 222 ----------------------~~~~~~~~~l~~~-----------~~--------~~~~~~~~~~~~~vN~~g~~~l~~ 260 (484)
+..+++++++.+. +. ...+.++|+.++++|+.|++.+++
T Consensus 82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 161 (297)
T 1d7o_A 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Confidence 1122333333221 11 112458899999999999999999
Q ss_pred HHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHH
Q psy8786 261 FLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339 (484)
Q Consensus 261 allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~ 339 (484)
+++|+|+++|+||++||.++.. .+.. ...|++||+|+++|+++
T Consensus 162 ~~~~~m~~~g~iv~isS~~~~~~~~~~------------------------------------~~~Y~asKaa~~~~~~~ 205 (297)
T 1d7o_A 162 HFLPIMNPGGASISLTYIASERIIPGY------------------------------------GGGMSSAKAALESDTRV 205 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSCCTTC------------------------------------TTTHHHHHHHHHHHHHH
T ss_pred HHHHHhccCceEEEEeccccccCCCCc------------------------------------chHHHHHHHHHHHHHHH
Confidence 9999998789999999988742 2211 04799999999999999
Q ss_pred HHHHhhh-hcCCCCeEEEEEeCCcccCCCccCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccc
Q psy8786 340 YQKKFDC-ELGNQDKVINAVHPGYVATNMSSFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINT 401 (484)
Q Consensus 340 LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~ 401 (484)
++.|+++ + |||||+|+||+|+|++.... ...+|+|+|+.++||+++.+.+++|+.+
T Consensus 206 la~e~~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i-- 279 (297)
T 1d7o_A 206 LAFEAGRKQ----NIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATI-- 279 (297)
T ss_dssp HHHHHHHHH----CCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEE--
T ss_pred HHHHhCccc----CcEEEEEeccccccchhhhccccHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEE--
Confidence 9999985 7 99999999999999986542 1268999999999999999999999998
Q ss_pred cccceeec
Q psy8786 402 FIPAIYTV 409 (484)
Q Consensus 402 ~~~g~~~~ 409 (484)
.++|++..
T Consensus 280 ~vdgG~~~ 287 (297)
T 1d7o_A 280 YVDNGLNS 287 (297)
T ss_dssp EESTTGGG
T ss_pred EECCCcee
Confidence 67887753
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=238.06 Aligned_cols=181 Identities=19% Similarity=0.190 Sum_probs=148.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++|++|||||++|||+++|++|+++ |++|++++ |+.+..++..+++...
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDA-GMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999 89999988 5444444443333211
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
.......++++..+++|+.|++.++++++|.|++ .++||++||.++. ..+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 171 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFG---------- 171 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT----------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCC----------
Confidence 1123356899999999999999999999999854 4899999998773 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC--
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-- 373 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-- 373 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++......
T Consensus 172 ---------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~~~~ 220 (269)
T 3gk3_A 172 ---------------------------QANYASAKAGIHGFTKTLALETAKR----GITVNTVSPGYLATAMVEAVPQDV 220 (269)
T ss_dssp ---------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTTTC-----
T ss_pred ---------------------------cchHHHHHHHHHHHHHHHHHHhhhc----CCEEEEEecCcccchhhhhhchhH
Confidence 2789999999999999999999988 9999999999999998754321
Q ss_pred --------------CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 374 --------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 374 --------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 221 ~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i--~vdgG~~ 267 (269)
T 3gk3_A 221 LEAKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADL--AINGGMH 267 (269)
T ss_dssp --CCSGGGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEE--EESTTSC
T ss_pred HHHHhhhcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEE--EECCCEe
Confidence 48999999999999999999999999 6787764
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=241.71 Aligned_cols=186 Identities=20% Similarity=0.200 Sum_probs=153.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh------c---------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD------R--------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~------~--------------------- 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999 89999999998777665554421 1
Q ss_pred --------------C--------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHH
Q psy8786 235 --------------A--------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 --------------~--------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +|+||++||.++......
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~~~----- 175 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHS----- 175 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCT-----
T ss_pred HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCCCC-----
Confidence 1 112245889999999999999999999999864 489999999887432100
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 176 ------------------------------~~~~Y~asKaa~~~l~~~la~el~~~----gI~v~~v~PG~v~T~~~~~~ 221 (297)
T 1xhl_A 176 ------------------------------GYPYYACAKAALDQYTRCTAIDLIQH----GVRVNSVSPGAVATGFMGAM 221 (297)
T ss_dssp ------------------------------TSHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCSSHHHHT
T ss_pred ------------------------------CcchHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCCcCcccccc
Confidence 12789999999999999999999987 99999999999999974321
Q ss_pred ------------------------CCCCHHhHHHHHHHHHhhh-ccccccccccccccceeec
Q psy8786 372 ------------------------GNVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ------------------------~~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++. +.+++|+.+ .++|++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i--~vdGG~~~ 282 (297)
T 1xhl_A 222 GLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSI--VADGGSTL 282 (297)
T ss_dssp TCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE--EESTTGGG
T ss_pred ccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEE--EECCCccc
Confidence 1268999999999999998 999999998 77888754
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=236.45 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=148.5
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
.++++|++|||||+ +|||+++|++|+++ |++|++++|+....+.. +++...
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKRE-GAELAFTYVGDRFKDRI-TEFAAEFGSELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGHHHH-HHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHc-CCCEEEEecchhhHHHH-HHHHHHcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 45689999999999 99999999999999 89999999985433222 221110
Q ss_pred -------------CCC-----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHH
Q psy8786 235 -------------AST-----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLE 289 (484)
Q Consensus 235 -------------~~~-----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~ 289 (484)
+.. ....++++..+++|+.+++.++++++|.|+++++||++||.++.. .+.
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 163 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPN---- 163 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT----
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCC----
Confidence 111 145689999999999999999999999998889999999988743 222
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++..
T Consensus 164 ---------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~ 206 (271)
T 3ek2_A 164 ---------------------------------YNTMGLAKAALEASVRYLAVSLGAK----GVRVNAISAGPIKTLAAS 206 (271)
T ss_dssp ---------------------------------TTHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCC-----C
T ss_pred ---------------------------------ccchhHHHHHHHHHHHHHHHHHHhc----CcEEEEEecCcccchhhh
Confidence 2789999999999999999999887 999999999999999876
Q ss_pred CC-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 370 FM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 370 ~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
.. ...+|+|+|+.++||+++.+.+++|+.+ .+||++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i--~vdgG~~~~ 262 (271)
T 3ek2_A 207 GIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVM--HVDSGFNAV 262 (271)
T ss_dssp CCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEE--EESTTGGGB
T ss_pred cccchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEE--EECCCeeee
Confidence 43 1279999999999999999999999999 788888653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=240.81 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=150.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-----------------------c----
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-----------------------R---- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-----------------------~---- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+++++++..+++.. .
T Consensus 5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 83 (270)
T 1yde_A 5 TRYAGKVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRL 83 (270)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999999999999999999999999 89999999987765544333211 0
Q ss_pred -------CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 -------AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
+.. ....++|+..+++|+.|++.++++++|+|++ .++||++||..+. +.+.
T Consensus 84 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 150 (270)
T 1yde_A 84 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQ------------- 150 (270)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTT-------------
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCC-------------
Confidence 110 1235789999999999999999999999864 6999999998763 3222
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|.|++....
T Consensus 151 ------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~vn~v~Pg~v~t~~~~~~~~~~~~~ 202 (270)
T 1yde_A 151 ------------------------AVPYVATKGAVTAMTKALALDESPY----GVRVNCISPGNIWTPLWEELAALMPDP 202 (270)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCCHHHHHHHTTSSSH
T ss_pred ------------------------CcccHHHHHHHHHHHHHHHHHhhhh----CcEEEEEEeCccccchhhhhhhcccch
Confidence 2789999999999999999999987 99999999999999864210
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
...+|+|+|+.++||+++ ++++||+.+ .+||++...
T Consensus 203 ~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~itG~~i--~vdGG~~~~ 252 (270)
T 1yde_A 203 RASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIEL--LVTGGAELG 252 (270)
T ss_dssp HHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEE--EESTTTTSC
T ss_pred HHHHHHHhhcCCCCCCcCHHHHHHHHHHHccc-CCCcCCCEE--EECCCeecc
Confidence 126899999999999998 799999999 788887543
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=246.37 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=134.6
Q ss_pred CCCCCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecCc-----------h-------------------------
Q psy8786 181 SVDPSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARDK-----------K------------------------- 222 (484)
Q Consensus 181 ~~~L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~~-----------~------------------------- 222 (484)
.++|+||++||||| ++|||+++|++|+++ |++|++++|++ +
T Consensus 4 ~~~l~~k~~lVTGa~~s~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2ptg_A 4 PVDLRGKTAFVAGVADSNGYGWAICKLLRAA-GARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPV 82 (319)
T ss_dssp CCCCTTCEEEEECCCCTTSHHHHHHHHHHHT-TCEEEEEECHHHHHHHHC------------------------------
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHC-CCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccc
Confidence 46689999999999 899999999999999 89999987531 1
Q ss_pred ------------------------------------hHHHHHHHHHhc-----------CC--------CCccHHHHHHH
Q psy8786 223 ------------------------------------KGAEAVQVLKDR-----------AS--------TVPFAIQAEKT 247 (484)
Q Consensus 223 ------------------------------------~~~~~~~~l~~~-----------~~--------~~~~~~~~~~~ 247 (484)
..+++++++.+. +. .....++|+.+
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~ 162 (319)
T 2ptg_A 83 DLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAA 162 (319)
T ss_dssp --CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHH
T ss_pred cccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHH
Confidence 122222332221 11 11245889999
Q ss_pred HHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhh
Q psy8786 248 ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAY 326 (484)
Q Consensus 248 ~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (484)
+++|+.|++.++++++|+|+++|+||++||.++.. .+.. ...|
T Consensus 163 ~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~------------------------------------~~~Y 206 (319)
T 2ptg_A 163 VSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGY------------------------------------GGGM 206 (319)
T ss_dssp HHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------------------------
T ss_pred HhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccccCcc------------------------------------chhh
Confidence 99999999999999999998789999999998742 2211 0479
Q ss_pred HHhHHHHHHHHHHHHHHhhh-hcCCCCeEEEEEeCCcccCCCccCC-----------------------CCCCHHhHHHH
Q psy8786 327 AVSKIGVNLLTRIYQKKFDC-ELGNQDKVINAVHPGYVATNMSSFM-----------------------GNVNIFDDSST 382 (484)
Q Consensus 327 ~aSKaAl~~lt~~LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~~-----------------------~~~~peevA~~ 382 (484)
++||+|+++|+++|+.|+++ + |||||+|+||+|+|+|.... ...+|+|+|+.
T Consensus 207 ~asKaal~~l~~~la~el~~~~----gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~ 282 (319)
T 2ptg_A 207 SSAKAALESDCRTLAFEAGRAR----AVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRA 282 (319)
T ss_dssp ------THHHHHHHHHHHHHHH----CCEEEEEEECCCC-------------------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccc----CeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence 99999999999999999985 7 99999999999999985421 12589999999
Q ss_pred HHHHHhhhccccccccccccccceeec
Q psy8786 383 FNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 383 ~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
++||+++.+.++||+.+ .+||++..
T Consensus 283 v~~L~s~~~~~itG~~i--~vdGG~~~ 307 (319)
T 2ptg_A 283 ALFLLSPLARAVTGATL--YVDNGLHA 307 (319)
T ss_dssp HHHHTSGGGTTCCSCEE--EESTTCTT
T ss_pred HHHHhCcccCCccCCEE--EECCCcee
Confidence 99999999999999999 78888753
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=236.69 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=149.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------- 234 (484)
+|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 589999999999999999999999 899999999987766655554321
Q ss_pred -------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 -------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||..+. +.+.
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------ 148 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPE------------ 148 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC------------
Confidence 10 11245889999999999999999999999865 4799999998874 3222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 149 -------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~ 199 (256)
T 1geg_A 149 -------------------------LAVYSSSKFAVRGLTQTAARDLAPL----GITVNGYCPGIVKTPMWAEIDRQVSE 199 (256)
T ss_dssp -------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBSSHHHHHHHHHHHH
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHHHHc----CeEEEEEEECCCccchhhhhhhhccc
Confidence 2789999999999999999999987 99999999999999874211
Q ss_pred --------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~~ 254 (256)
T 1geg_A 200 AAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSL--LIDGGMV 254 (256)
T ss_dssp HHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESSSSS
T ss_pred cccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE--EeCCCcc
Confidence 1268999999999999999999999998 6788764
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=236.57 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=147.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-HHHHHHHh--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-EAVQVLKD-------------------------- 233 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-~~~~~l~~-------------------------- 233 (484)
++++.+|++|||||++|||+++|++|+++ |++|++++|+.+... ...+.+..
T Consensus 2 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 80 (264)
T 3i4f_A 2 SLGRFVRHALITAGTKGLGKQVTEKLLAK-GYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAM 80 (264)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcccccCEEEEeCCCchhHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45667899999999999999999999999 899999877654322 22222111
Q ss_pred -c---------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHH
Q psy8786 234 -R---------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 234 -~---------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
. ... ....++++..+++|+.|++.++++++|.|++ .++||++||.... ..+..
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~---- 156 (264)
T 3i4f_A 81 SHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWI---- 156 (264)
T ss_dssp HHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCT----
T ss_pred HHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCC----
Confidence 0 111 1245889999999999999999999999965 3899999988432 11111
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|.|++...
T Consensus 157 -------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~ 201 (264)
T 3i4f_A 157 -------------------------------YRSAFAAAKVGLVSLTKTVAYEEAEY----GITANMVCPGDIIGEMKEA 201 (264)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCCCGGGGSC
T ss_pred -------------------------------CCchhHHHHHHHHHHHHHHHHHhhhc----CcEEEEEccCCccCccchh
Confidence 12789999999999999999999987 9999999999999998764
Q ss_pred CC---------------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 371 MG---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 371 ~~---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
.. ..+|+|+|+.+.||+++.+.+++|+.+ .+||++...
T Consensus 202 ~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i--~vdGG~~~~ 254 (264)
T 3i4f_A 202 TIQEARQLKEHNTPIGRSGTGEDIARTISFLCEDDSDMITGTII--EVTGAVDVI 254 (264)
T ss_dssp CHHHHHHC--------CCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESCSCCCC
T ss_pred ccHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCCCCcEE--EEcCceeec
Confidence 31 268999999999999999999999999 788888653
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=232.37 Aligned_cols=174 Identities=21% Similarity=0.268 Sum_probs=146.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAE-GAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999 899999999988777666555321
Q ss_pred ----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccc-cccchHHHHHHHhh
Q psy8786 235 ----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHL-SQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~-~~~~~~~~~~~~~~ 296 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +|+||++||.++.. .+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 151 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRVNVRN----------- 151 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTCCCTT-----------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcCCCCC-----------
Confidence 0 112356899999999999999999999999853 48999999988742 222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 152 --------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~~~~~ 201 (247)
T 2jah_A 152 --------------------------AAVYQATKFGVNAFSETLRQEVTER----GVRVVVIEPGTTDTELRGHITHTAT 201 (247)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBSSSGGGGCCCHHH
T ss_pred --------------------------CcHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEECCCCCCcchhcccchhh
Confidence 2789999999999999999999988 999999999999999864321
Q ss_pred ----------C--CCHHhHHHHHHHHHhhhcccccccc
Q psy8786 373 ----------N--VNIFDDSSTFNAFERVISHFLIGQQ 398 (484)
Q Consensus 373 ----------~--~~peevA~~~~~L~s~~a~~itG~~ 398 (484)
. .+|+|+|+.++|++++.+.+++++.
T Consensus 202 ~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~~~~~~~i 239 (247)
T 2jah_A 202 KEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEI 239 (247)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHHHHHHSCTTEEEEEE
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhCCCccCccceE
Confidence 2 7899999999999998888887764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=236.41 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=143.9
Q ss_pred CCCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH---------------------HHHHHHhc--
Q psy8786 178 VNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE---------------------AVQVLKDR-- 234 (484)
Q Consensus 178 ~~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~---------------------~~~~l~~~-- 234 (484)
..|..++.+|++|||||++|||+++|++|+++ |++|++++|+.+++++ +++++.+.
T Consensus 8 ~~m~~~~~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 86 (266)
T 3p19_A 8 QQMGRGSMKKLVVITGASSGIGEAIARRFSEE-GHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYG 86 (266)
T ss_dssp -------CCCEEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCC
Confidence 34456788999999999999999999999999 8999999998654332 22222221
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHhh
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~ 296 (484)
.......++|+.++++|+.|++.++++++|.|++ .|+||++||.++.. .+.
T Consensus 87 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~----------- 155 (266)
T 3p19_A 87 PADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPD----------- 155 (266)
T ss_dssp SEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT-----------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCC-----------
Confidence 1123456899999999999999999999999964 48999999998843 222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|++||+|+++|+++++.|++++ |||||+|+||+|+|++.....
T Consensus 156 --------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~ 205 (266)
T 3p19_A 156 --------------------------HAAYCGTKFAVHAISENVREEVAAS----NVRVMTIAPSAVKTELLSHTTSQQI 205 (266)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBSSSGGGGCSCHHH
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHHHhccc----CcEEEEEeeCccccchhhcccchhh
Confidence 2789999999999999999999988 999999999999999876432
Q ss_pred -------------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
..+|+|+|+.++||++....+.+++.+
T Consensus 206 ~~~~~~~~~~~~r~~~pedvA~av~~l~~~~~~~~~~~i~ 245 (266)
T 3p19_A 206 KDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIREIA 245 (266)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCTTEEEEEEE
T ss_pred hHHHHhhcccccCCCCHHHHHHHHHHHHcCCCCccceeeE
Confidence 268999999999999998888888765
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=240.31 Aligned_cols=177 Identities=19% Similarity=0.207 Sum_probs=137.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAE-GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 899999999988777766655321
Q ss_pred ------------CC--C-----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEeCCCccccccchHHHH
Q psy8786 235 ------------AS--T-----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 ------------~~--~-----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
+. . ..+.++|+.++++|+.|++.++++++|.|++ +|+||++||.++.....
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~------ 181 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRP------ 181 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCT------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCC------
Confidence 11 1 1245899999999999999999999999975 47999999998743221
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|+|....
T Consensus 182 ------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~ 227 (281)
T 4dry_A 182 ------------------------------NSAPYTATKHAITGLTKSTALDGRMH----DIACGQIDIGNAATDMTARM 227 (281)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEECBCC------
T ss_pred ------------------------------CChhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEECcCcChhhhhh
Confidence 12789999999999999999999988 99999999999999987543
Q ss_pred C--------------CCCHHhHHHHHHHHHhhhcc-ccccccc
Q psy8786 372 G--------------NVNIFDDSSTFNAFERVISH-FLIGQQI 399 (484)
Q Consensus 372 ~--------------~~~peevA~~~~~L~s~~a~-~itG~~i 399 (484)
. ..+|+|+|+.++||++.... .+++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~~~~i 270 (281)
T 4dry_A 228 STGVLQANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTV 270 (281)
T ss_dssp -CEEECTTSCEEECCCBCHHHHHHHHHHHHHSCTTEEEEEEEE
T ss_pred cchhhhhhhcccccCCCCHHHHHHHHHHHhCCCccCccccEEE
Confidence 1 27899999999999985544 4444444
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-28 Score=237.33 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=148.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEE-EecCchhHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYL-TARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl-~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
..++.+|++|||||++|||+++|++|+++ |++|++ ..|+.+..++..+++...
T Consensus 21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~-G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 21 QSNAMSRSVLVTGASKGIGRAIARQLAAD-GFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999 888865 557766666555554321
Q ss_pred -------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhh---cCCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 -------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLR---RHARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 -------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~---~~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
+. .....++++..+++|+.|++.+++++++.|. +.++||++||.++. +.+.
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 173 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRG------ 173 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTT------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCC------
Confidence 00 1235589999999999999999999988774 34899999998873 3222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 174 -------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~ 218 (267)
T 4iiu_A 174 -------------------------------QVNYSAAKAGIIGATKALAIELAKR----KITVNCIAPGLIDTGMIEME 218 (267)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSTTCCCC
T ss_pred -------------------------------CchhHHHHHHHHHHHHHHHHHHhhc----CeEEEEEEEeeecCCccccc
Confidence 2789999999999999999999987 99999999999999987542
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++
T Consensus 219 ~~~~~~~~~~~p~~~~~~~edva~~~~~L~s~~~~~itG~~i--~vdGG~ 266 (267)
T 4iiu_A 219 ESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVI--SINGGM 266 (267)
T ss_dssp HHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCccCCEE--EeCCCc
Confidence 1268999999999999999999999999 677765
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=244.81 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=149.2
Q ss_pred CCCCCCCEEEEEcC--CchHHHHHHHHHHhcCCCeEEEEecCc-------------------------------------
Q psy8786 181 SVDPSERVAVVTGA--NKGLGFGIVKSLCEQFDGYIYLTARDK------------------------------------- 221 (484)
Q Consensus 181 ~~~L~gKvaLITGa--ssGIG~aiA~~La~~gga~Vvl~~R~~------------------------------------- 221 (484)
.++|+||++||||| ++|||+++|++|+++ |++|++++|++
T Consensus 4 ~~~l~gk~~lVTGa~~s~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (315)
T 2o2s_A 4 PIDLRGQTAFVAGVADSHGYGWAIAKHLASA-GARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAA 82 (315)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHTT-TCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTT
T ss_pred cccCCCCEEEEeCCCCCCChHHHHHHHHHHC-CCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 46689999999999 899999999999999 89999987642
Q ss_pred ----------------------hhHHHHHHHHHhc-----------CC--------CCccHHHHHHHHHhhhHHHHHHHH
Q psy8786 222 ----------------------KKGAEAVQVLKDR-----------AS--------TVPFAIQAEKTILTNYLGLVRTCV 260 (484)
Q Consensus 222 ----------------------~~~~~~~~~l~~~-----------~~--------~~~~~~~~~~~~~vN~~g~~~l~~ 260 (484)
+..+++++++.+. +. ...+.++|+..+++|+.|++.+++
T Consensus 83 ~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 162 (315)
T 2o2s_A 83 FDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQ 162 (315)
T ss_dssp CSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHH
Confidence 0122333333221 11 112358899999999999999999
Q ss_pred HHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHH
Q psy8786 261 FLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339 (484)
Q Consensus 261 allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~ 339 (484)
+++|+|+++|+||++||.++.. .+.. ...|++||+|+++|+++
T Consensus 163 ~~~~~m~~~g~Iv~isS~~~~~~~~~~------------------------------------~~~Y~asKaal~~l~~~ 206 (315)
T 2o2s_A 163 HFGPIMNEGGSAVTLSYLAAERVVPGY------------------------------------GGGMSSAKAALESDTRT 206 (315)
T ss_dssp HHSTTEEEEEEEEEEEEGGGTSCCTTC------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEecccccccCCCc------------------------------------cHHHHHHHHHHHHHHHH
Confidence 9999998789999999988742 2211 04799999999999999
Q ss_pred HHHHhhh-hcCCCCeEEEEEeCCcccCCCccCC-----------------------CCCCHHhHHHHHHHHHhhhccccc
Q psy8786 340 YQKKFDC-ELGNQDKVINAVHPGYVATNMSSFM-----------------------GNVNIFDDSSTFNAFERVISHFLI 395 (484)
Q Consensus 340 LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~~-----------------------~~~~peevA~~~~~L~s~~a~~it 395 (484)
++.|+++ + |||||+|+||+|+|+|.... ...+|+|+|+.++||+++.+.++|
T Consensus 207 la~el~~~~----gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~it 282 (315)
T 2o2s_A 207 LAWEAGQKY----GVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVS 282 (315)
T ss_dssp HHHHHHHHT----CCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCC
T ss_pred HHHHhCccc----CeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCc
Confidence 9999985 6 99999999999999874321 126899999999999999999999
Q ss_pred cccccccccceeec
Q psy8786 396 GQQINTFIPAIYTV 409 (484)
Q Consensus 396 G~~i~~~~~g~~~~ 409 (484)
|+.+ .+||++..
T Consensus 283 G~~i--~vdGG~~~ 294 (315)
T 2o2s_A 283 GVTL--YVDNGLHA 294 (315)
T ss_dssp SCEE--EESTTGGG
T ss_pred CCEE--EECCCeee
Confidence 9999 78888743
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=235.71 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=151.4
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCc--hhHHHH-----------------------HHHHHhc
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDK--KKGAEA-----------------------VQVLKDR 234 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~--~~~~~~-----------------------~~~l~~~ 234 (484)
.+++||++|||||+ +|||+++|++|+++ |++|++++|+. +.+++. .+++.+.
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHRE-GAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKV 100 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHT-TCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHc-CCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 45789999999988 88999999999999 89999999986 222222 1111111
Q ss_pred -----------CCC------C-----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHH
Q psy8786 235 -----------AST------V-----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 235 -----------~~~------~-----~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~ 290 (484)
+.. . ...++++..+++|+.+++.++++++|.|++ .++||++||.++. ..+.
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 175 (280)
T 3nrc_A 101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPS----- 175 (280)
T ss_dssp CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTT-----
T ss_pred cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCC-----
Confidence 111 1 455889999999999999999999999874 5899999998874 3222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 176 --------------------------------~~~Y~asKaal~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~ 219 (280)
T 3nrc_A 176 --------------------------------YNTMGVAKASLEATVRYTALALGED----GIKVNAVSAGPIKTLAASG 219 (280)
T ss_dssp --------------------------------THHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCCCCSGGGG
T ss_pred --------------------------------chhhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEeeccccchhhhc
Confidence 2789999999999999999999988 9999999999999999765
Q ss_pred CC-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 MG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 ~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.. ..+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i--~vdgG~~~ 273 (280)
T 3nrc_A 220 ISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVV--HVDAGYHC 273 (280)
T ss_dssp CTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEE--EESTTGGG
T ss_pred CcchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEE--EECCCccc
Confidence 43 268999999999999999999999999 77888754
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-28 Score=235.36 Aligned_cols=179 Identities=20% Similarity=0.212 Sum_probs=149.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh--HHHHHHHHHhc-----------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--GAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~--~~~~~~~l~~~----------------------------- 234 (484)
||++|||||++|||+++|++|+++ |++|++++|+.++ +++..+++...
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAAD-GFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999 8999999998776 66555544321
Q ss_pred ---------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--C-CEEEEEeCCCccc-cccchHHHHHHHh
Q psy8786 235 ---------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--H-ARVVNLSSSAGHL-SQITNLELKKRLR 295 (484)
Q Consensus 235 ---------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~-grIV~iSS~ag~~-~~~~~~~~~~~~~ 295 (484)
+. .....++|+..+++|+.|++.++++++|.|++ . ++||++||.++.. .+.
T Consensus 81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 150 (258)
T 3a28_C 81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPI---------- 150 (258)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCC----------
Confidence 10 11245899999999999999999999999864 3 8999999988742 222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----- 370 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----- 370 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 151 ---------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~t~~~~~~~~~~ 199 (258)
T 3a28_C 151 ---------------------------LSAYSTTKFAVRGLTQAAAQELAPK----GHTVNAYAPGIVGTGMWEQIDAEL 199 (258)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCSHHHHHHHHHH
T ss_pred ---------------------------chhHHHHHHHHHHHHHHHHHHHHhh----CeEEEEEECCccCChhhhhhhhhh
Confidence 2789999999999999999999987 9999999999999997431
Q ss_pred -----C----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 -----M----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 -----~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~~ 256 (258)
T 3a28_C 200 SKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASENSNYVTGQVM--LVDGGML 256 (258)
T ss_dssp HHHHCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESSSSC
T ss_pred ccccCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccCCCCCCEE--EECCCEe
Confidence 0 1268999999999999999999999998 6788764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=233.88 Aligned_cols=177 Identities=23% Similarity=0.240 Sum_probs=144.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 103 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSL-GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAA 103 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999 899999999988877766665421
Q ss_pred -----------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++++..+++|+.|++.++++++|.|++ .|+||++||.++......
T Consensus 104 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 175 (262)
T 3rkr_A 104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVAD-------- 175 (262)
T ss_dssp HSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTT--------
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCC--------
Confidence 11 11345889999999999999999999999864 489999999988432211
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
...|++||+|+++|+++++.|+++. ||+||+|+||+|+|++.....
T Consensus 176 ----------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~ 223 (262)
T 3rkr_A 176 ----------------------------GAAYTASKWGLNGLMTSAAEELRQH----QVRVSLVAPGSVRTEFGVGLSAK 223 (262)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCC-----------
T ss_pred ----------------------------CchHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCCCcCCcccccccc
Confidence 2789999999999999999999887 999999999999999875432
Q ss_pred -----CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 373 -----NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 373 -----~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
..+|+|+|+.+.||+++...+++|+.+
T Consensus 224 ~~~~~~~~p~dvA~~v~~l~s~~~~~~~g~~~ 255 (262)
T 3rkr_A 224 KSALGAIEPDDIADVVALLATQADQSFISEVL 255 (262)
T ss_dssp -----CCCHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred cccccCCCHHHHHHHHHHHhcCccccccCcEE
Confidence 279999999999999999999999876
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-28 Score=237.29 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=148.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch------------------hHHHHHHHHHhc---------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK------------------KGAEAVQVLKDR--------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~------------------~~~~~~~~l~~~--------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.+ ..+++++++.+.
T Consensus 24 ~~~~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~ 102 (260)
T 3un1_A 24 MRNQQKVVVITGASQGIGAGLVRAYRDR-NYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVN 102 (260)
T ss_dssp HHTTCCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred hCcCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence 5689999999999999999999999999 899999998643 223334433222
Q ss_pred --C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 --A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 --~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 103 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------------- 163 (260)
T 3un1_A 103 NAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMV------------------- 163 (260)
T ss_dssp CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBT-------------------
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCC-------------------
Confidence 1 112356899999999999999999999999865 47999999987632111
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------------C
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------G 372 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------~ 372 (484)
..+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.... .
T Consensus 164 ---------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~t~~~~~~~~~~~~~~~p~~r 224 (260)
T 3un1_A 164 ---------------GMPSALASLTKGGLNAVTRSLAMEFSRS----GVRVNAVSPGVIKTPMHPAETHSTLAGLHPVGR 224 (260)
T ss_dssp ---------------TCCCHHHHHHHHHHHHHHHHHHHHTTTT----TEEEEEEEECCBCCTTSCGGGHHHHHTTSTTSS
T ss_pred ---------------CCccHHHHHHHHHHHHHHHHHHHHhCcC----CeEEEEEeecCCCCCCCCHHHHHHHhccCCCCC
Confidence 1123789999999999999999999887 99999999999999986532 1
Q ss_pred CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|++++|| +.+.+++|+.+ .+||++..
T Consensus 225 ~~~~~dva~av~~L--~~~~~itG~~i--~vdGG~~~ 257 (260)
T 3un1_A 225 MGEIRDVVDAVLYL--EHAGFITGEIL--HVDGGQNA 257 (260)
T ss_dssp CBCHHHHHHHHHHH--HHCTTCCSCEE--EESTTGGG
T ss_pred CcCHHHHHHHHHHh--cccCCCCCcEE--EECCCeec
Confidence 26899999999999 67889999999 67887754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=265.19 Aligned_cols=180 Identities=18% Similarity=0.150 Sum_probs=149.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc---------hhHHHHHHHHHhc------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK---------KKGAEAVQVLKDR------------------ 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~---------~~~~~~~~~l~~~------------------ 234 (484)
++++||++|||||++|||+++|++|+++ |++|++++|+. +.++++.+++...
T Consensus 4 ~~l~gkvalVTGas~GIG~a~A~~la~~-Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v 82 (604)
T 2et6_A 4 VDFKDKVVIITGAGGGLGKYYSLEFAKL-GAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIV 82 (604)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 5689999999999999999999999999 99999998764 5555555555321
Q ss_pred -----------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchH
Q psy8786 235 -----------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 -----------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~ 288 (484)
.....+.++|+.++++|+.|+|.++++++|+|++ .|+|||+||.++. +.+.
T Consensus 83 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~--- 159 (604)
T 2et6_A 83 ETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFG--- 159 (604)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC---
Confidence 1123456899999999999999999999999965 4899999999883 3332
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
+..|++||+|+.+|+++||.|++++ |||||+|+|| +.|+|.
T Consensus 160 ----------------------------------~~~Y~asKaal~~lt~~la~El~~~----gIrVn~v~Pg-~~T~m~ 200 (604)
T 2et6_A 160 ----------------------------------QANYASAKSALLGFAETLAKEGAKY----NIKANAIAPL-ARSRMT 200 (604)
T ss_dssp ----------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEC-CCCHHH
T ss_pred ----------------------------------chHHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEccC-CcCccc
Confidence 2789999999999999999999988 9999999998 689886
Q ss_pred cCC------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 369 SFM------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 369 ~~~------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
... ...+|+|+|+.++||+++. .++||+.+ .++|++
T Consensus 201 ~~~~~~~~~~~~~pe~vA~~v~~L~s~~-~~itG~~~--~vdgG~ 242 (604)
T 2et6_A 201 ESIMPPPMLEKLGPEKVAPLVLYLSSAE-NELTGQFF--EVAAGF 242 (604)
T ss_dssp HTTSCHHHHTTCSHHHHHHHHHHHTSSS-CCCCSCEE--EEETTE
T ss_pred cccCChhhhccCCHHHHHHHHHHHhCCc-ccCCCCEE--EECCCe
Confidence 432 2368999999999999998 99999998 566654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=237.47 Aligned_cols=171 Identities=18% Similarity=0.169 Sum_probs=134.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.++.+|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 24 SKTGKKIAIVTGAGSGVGRAVAVALAGA-GYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGR 102 (272)
T ss_dssp ----CCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999 899999999988777666554321
Q ss_pred --------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 --------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 --------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. ...+.++|+..+++|+.|++.++++++|.|++ +|+||++||..+......
T Consensus 103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~--------- 173 (272)
T 4dyv_A 103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPY--------- 173 (272)
T ss_dssp CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTT---------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCC---------
Confidence 11 11245899999999999999999999999975 479999999988432211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--- 372 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.+...
T Consensus 174 ---------------------------~~~Y~asKaa~~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~~ 222 (272)
T 4dyv_A 174 ---------------------------SAPYTATKHAITGLTKSTSLDGRVH----DIACGQIDIGNADTPMAQKMKAGV 222 (272)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEEECC-----------
T ss_pred ---------------------------chHHHHHHHHHHHHHHHHHHHhCcc----CEEEEEEEECcccChhhhhhcccc
Confidence 2789999999999999999999988 999999999999999875431
Q ss_pred -----------CCCHHhHHHHHHHHHhhhccc
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHF 393 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~ 393 (484)
..+|+|+|+.++||++.....
T Consensus 223 ~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 223 PQADLSIKVEPVMDVAHVASAVVYMASLPLDA 254 (272)
T ss_dssp -------------CHHHHHHHHHHHHHSCTTS
T ss_pred hhhhhcccccCCCCHHHHHHHHHHHhCCCCcC
Confidence 278999999999999865544
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=230.17 Aligned_cols=184 Identities=21% Similarity=0.180 Sum_probs=144.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-----------------hHHHHHHHHHhc----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-----------------KGAEAVQVLKDR---------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-----------------~~~~~~~~l~~~---------- 234 (484)
++|+||++|||||++|||+++|++|+++ |++|++++|+.+ ..+++.+++.+.
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~ 81 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEA-GAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNA 81 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEEC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4678999999999999999999999999 899999988632 233344443322
Q ss_pred -C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 82 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------------- 141 (250)
T 2fwm_X 82 AGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRI-------------------- 141 (250)
T ss_dssp CCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT--------------------
T ss_pred CCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCC--------------------
Confidence 1 112356899999999999999999999999965 58999999988742211
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------- 371 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------- 371 (484)
+...|++||+++++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 142 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 201 (250)
T 2fwm_X 142 ----------------GMSAYGASKAALKSLALSVGLELAGS----GVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGF 201 (250)
T ss_dssp ----------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCC----------------------
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHhCcc----CCEEEEEECCcccCccccccccChhHHHHHHhhh
Confidence 12789999999999999999999987 99999999999999974320
Q ss_pred -------C----CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------G----NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------~----~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ..+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 202 ~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~~ 247 (250)
T 2fwm_X 202 GEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDI--VVDGGST 247 (250)
T ss_dssp --------------CHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred hhcccccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE--EECCCcc
Confidence 0 158999999999999999999999998 6777763
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=232.25 Aligned_cols=179 Identities=14% Similarity=0.052 Sum_probs=148.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-e--cCchhHHHHHHHH------------------Hhc----------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-A--RDKKKGAEAVQVL------------------KDR---------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~--R~~~~~~~~~~~l------------------~~~---------- 234 (484)
||++|||||++|||+++|++|+++ |++|+++ + |+.+++++..+++ .+.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lv~~ 79 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQD-GYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHGEAIDTIVSN 79 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHHHHHGGGSSCEEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 589999999999999999999999 8999999 6 9987776655443 110
Q ss_pred -CC--C-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 -AS--T-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 -~~--~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+. . ....++|+..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------------- 142 (244)
T 1zmo_A 80 DYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLA----------------- 142 (244)
T ss_dssp CCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT-----------------
T ss_pred CCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCC-----------------
Confidence 11 1 1245899999999999999999999999965 48999999988743211
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc---cC---------
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS---SF--------- 370 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~---~~--------- 370 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|+|. ..
T Consensus 143 -------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 199 (244)
T 1zmo_A 143 -------------------YNPLYGPARAATVALVESAAKTLSRD----GILLYAIGPNFFNNPTYFPTSDWENNPELRE 199 (244)
T ss_dssp -------------------TCTTHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESSBCBTTTBCHHHHHHCHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEeeCCCcCCcccccccccchHHHHH
Confidence 12789999999999999999999988 99999999999999997 21
Q ss_pred -----C---CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 371 -----M---GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 371 -----~---~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
. ...+|+|+|+.++||+++.+.+++|+.+ .+||++
T Consensus 200 ~~~~~~p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i--~vdgG~ 242 (244)
T 1zmo_A 200 RVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQFF--AFTGGY 242 (244)
T ss_dssp HHHHHCTTCSCBCHHHHHHHHHHHHTTTTGGGTTCEE--EESTTC
T ss_pred HHhcCCCCCCCcCHHHHHHHHHHHcCccccCccCCEE--EeCCCC
Confidence 1 1268999999999999999999999998 677775
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=233.40 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=149.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH----------------------Hhc------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL----------------------KDR------ 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l----------------------~~~------ 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.++ ++..+++ .+.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 80 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFARE-GALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDV 80 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 478999999999999999999999999 8999999998765 4333322 100
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~ 300 (484)
.......++|+..+++|+.|++.++++++|.|++ .++||++||.++. +.+.
T Consensus 81 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--------------- 145 (256)
T 2d1y_A 81 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQE--------------- 145 (256)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTT---------------
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCC---------------
Confidence 1112345889999999999999999999999965 3799999998874 2222
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------- 371 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 146 ----------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 199 (256)
T 2d1y_A 146 ----------------------NAAYNASKGGLVNLTRSLALDLAPL----RIRVNAVAPGAIATEAVLEAIALSPDPER 199 (256)
T ss_dssp ----------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHHC-------
T ss_pred ----------------------ChhHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEeeCCccCchhhhccccccCCHH
Confidence 2789999999999999999999987 99999999999999874210
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~--~v~gG~~~ 247 (256)
T 2d1y_A 200 TRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAIL--PVDGGMTA 247 (256)
T ss_dssp -CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCCEE--EECCCccc
Confidence 1258999999999999999999999998 67777654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=233.80 Aligned_cols=184 Identities=20% Similarity=0.186 Sum_probs=149.6
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------------------------
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-------------------------- 233 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-------------------------- 233 (484)
.+++||++|||||+ +|||+++|++|+++ |++|++++|+.+ .++..+++..
T Consensus 4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp ECCTTCEEEEESCCSSSSHHHHHHHHHHHH-TCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999 99999999999999 899999999864 1111111111
Q ss_pred -c-----------CCC----------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHH
Q psy8786 234 -R-----------AST----------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 234 -~-----------~~~----------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
. +.. ....++|+..+++|+.|++.++++++|.|+++|+||++||.++.....
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 155 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP------ 155 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCC------
Confidence 0 111 124588999999999999999999999998779999999987742211
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|+|++....
T Consensus 156 ------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~ 201 (261)
T 2wyu_A 156 ------------------------------KYNVMAIAKAALEASVRYLAYELGPK----GVRVNAISAGPVRTVAARSI 201 (261)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCCCCTGGGGC
T ss_pred ------------------------------CchHHHHHHHHHHHHHHHHHHHHhhh----CcEEEEEeeCCCcCchhhhc
Confidence 12789999999999999999999987 99999999999999986432
Q ss_pred C-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 G-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. ..+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 202 ~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~--~vdgG~~~ 254 (261)
T 2wyu_A 202 PGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVV--YVDAGYHI 254 (261)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred cccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEE--EECCCccc
Confidence 1 268999999999999999999999998 67777643
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=230.38 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=145.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-------hHHHHHHHHHhc-------C-------CCCcc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-------KGAEAVQVLKDR-------A-------STVPF 240 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-------~~~~~~~~l~~~-------~-------~~~~~ 240 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.+ ..+++.+++... + .....
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~ 80 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESE-HTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE 80 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCST-TEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence 4578999999999999999999999999 899999998642 334444443211 1 12345
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCC
Q psy8786 241 AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320 (484)
Q Consensus 241 ~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (484)
.++|+..+++|+.|++.++++++|.|+++|+||++||..+.....
T Consensus 81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------------------------------- 125 (223)
T 3uce_A 81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVA----------------------------------- 125 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCT-----------------------------------
T ss_pred HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCC-----------------------------------
Confidence 689999999999999999999999998889999999988743221
Q ss_pred CCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------------------CCCHHhHHH
Q psy8786 321 WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------------------NVNIFDDSS 381 (484)
Q Consensus 321 ~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------------------~~~peevA~ 381 (484)
+...|++||+|+++|+++++.|++ .||||+|+||+|+|++..... ..+|+|+|+
T Consensus 126 -~~~~Y~asK~a~~~~~~~la~e~~------~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~ 198 (223)
T 3uce_A 126 -NTYVKAAINAAIEATTKVLAKELA------PIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEASDIAM 198 (223)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHT------TSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHHHhhc------CcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHHHHHH
Confidence 127899999999999999999985 299999999999999876532 158999999
Q ss_pred HHHHHHhhhccccccccccccccceee
Q psy8786 382 TFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 382 ~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.++|+++ +.+++|+.+ .+||++.
T Consensus 199 ~~~~l~~--~~~~tG~~i--~vdgG~~ 221 (223)
T 3uce_A 199 AYLFAIQ--NSYMTGTVI--DVDGGAL 221 (223)
T ss_dssp HHHHHHH--CTTCCSCEE--EESTTGG
T ss_pred HHHHHcc--CCCCCCcEE--EecCCee
Confidence 9999997 589999999 6777764
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=243.89 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=148.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe---------cCchhHHHHHHHHHhc-----------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA---------RDKKKGAEAVQVLKDR----------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~---------R~~~~~~~~~~~l~~~----------------- 234 (484)
.++|+||++|||||++|||+++|++|+++ |++|++++ |+.+++++..+++...
T Consensus 4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~-Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~ 82 (319)
T 1gz6_A 4 PLRFDGRVVLVTGAGGGLGRAYALAFAER-GALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKL 82 (319)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHH
Confidence 46789999999999999999999999999 89999964 4556665555544321
Q ss_pred ------------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccch
Q psy8786 235 ------------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITN 287 (484)
Q Consensus 235 ------------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~ 287 (484)
+. ...+.++|+.++++|+.|++.++++++|.|++ .++||++||.++ .+.+.
T Consensus 83 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~~-- 160 (319)
T 1gz6_A 83 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFG-- 160 (319)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCC--
Confidence 10 12245899999999999999999999999965 489999999877 33222
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...|++||+|+++|++++++|++++ ||+||+|+||++ |++
T Consensus 161 -----------------------------------~~~Y~aSK~a~~~~~~~la~el~~~----gI~vn~v~PG~~-t~~ 200 (319)
T 1gz6_A 161 -----------------------------------QANYSAAKLGLLGLANTLVIEGRKN----NIHCNTIAPNAG-SRM 200 (319)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEEECC-STT
T ss_pred -----------------------------------CHHHHHHHHHHHHHHHHHHHHhccc----CEEEEEEeCCCc-ccc
Confidence 2789999999999999999999887 999999999998 888
Q ss_pred ccCCC------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 368 SSFMG------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 368 ~~~~~------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..... ..+|+|+|+.++||+++ ..+++|+.+ .++|+|..
T Consensus 201 ~~~~~~~~~~~~~~p~dvA~~~~~l~s~-~~~~tG~~~--~v~GG~~~ 245 (319)
T 1gz6_A 201 TETVMPEDLVEALKPEYVAPLVLWLCHE-SCEENGGLF--EVGAGWIG 245 (319)
T ss_dssp TGGGSCHHHHHHSCGGGTHHHHHHHTST-TCCCCSCEE--EEETTEEE
T ss_pred ccccCChhhhccCCHHHHHHHHHHHhCc-hhhcCCCEE--EECCCeEE
Confidence 65422 16899999999999987 458899988 67777754
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=237.33 Aligned_cols=185 Identities=19% Similarity=0.200 Sum_probs=152.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh------c----------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD------R---------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~------~---------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999 89999999998877666555421 1
Q ss_pred -------------C----------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHH
Q psy8786 235 -------------A----------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLEL 290 (484)
Q Consensus 235 -------------~----------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~ 290 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +++||++||.++......
T Consensus 82 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 157 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQP---- 157 (280)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCC----
T ss_pred HhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCCCC----
Confidence 1 112245789999999999999999999999853 489999999887432200
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
+...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++...
T Consensus 158 -------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~ 202 (280)
T 1xkq_A 158 -------------------------------DFLYYAIAKAALDQYTRSTAIDLAKF----GIRVNSVSPGMVETGFTNA 202 (280)
T ss_dssp -------------------------------SSHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCBCSSHHHH
T ss_pred -------------------------------cccHHHHHHHHHHHHHHHHHHHhccC----CeEEEEEeeCcCcCCcccc
Confidence 12789999999999999999999887 9999999999999997432
Q ss_pred C------------------------CCCCHHhHHHHHHHHHhhh-ccccccccccccccceeec
Q psy8786 371 M------------------------GNVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 ~------------------------~~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~ 409 (484)
. ...+|+|+|+.++||+++. +.+++|+.+ .++|++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i--~vdgG~~~ 264 (280)
T 1xkq_A 203 MGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSI--VADGGTSL 264 (280)
T ss_dssp TTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE--EESTTGGG
T ss_pred cccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeE--EECCCccc
Confidence 1 1268999999999999998 999999998 67887643
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=233.07 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=148.5
Q ss_pred CCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH---------------------------h
Q psy8786 183 DPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK---------------------------D 233 (484)
Q Consensus 183 ~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~---------------------------~ 233 (484)
+|+||++|||||+ +|||+++|++|+++ |++|++++|+. +.++..+++. +
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 83 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHH
Confidence 3789999999999 99999999999999 89999999986 2221111111 0
Q ss_pred c-----------CCCC-----------ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHH
Q psy8786 234 R-----------ASTV-----------PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 234 ~-----------~~~~-----------~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
. +... ...++|+..+++|+.|++.++++++|.|+++|+||++||.++.....
T Consensus 84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 157 (265)
T 1qsg_A 84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP------ 157 (265)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT------
T ss_pred HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCC------
Confidence 0 1111 34578999999999999999999999998779999999987742211
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|+|++....
T Consensus 158 ------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~ 203 (265)
T 1qsg_A 158 ------------------------------NYNVMGLAKASLEANVRYMANAMGPE----GVRVNAISAGPIRTLAASGI 203 (265)
T ss_dssp ------------------------------TTTHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCCCCTTGGGS
T ss_pred ------------------------------CchHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCCCccchhhcc
Confidence 12689999999999999999999877 99999999999999986432
Q ss_pred C-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 G-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. ..+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 204 ~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~--~vdgG~~~ 256 (265)
T 1qsg_A 204 KDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVV--HVDGGFSI 256 (265)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTGGG
T ss_pred cccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCccCCEE--EECCCcCC
Confidence 1 268999999999999999999999998 67877654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=232.14 Aligned_cols=183 Identities=21% Similarity=0.249 Sum_probs=148.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------------HHHHHHHHHhc-----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------------GAEAVQVLKDR----------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------------~~~~~~~l~~~----------- 234 (484)
++|++|++|||||++|||+++|++|+++ |++|++++|+.++ .+++.+++.+.
T Consensus 11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~A 89 (247)
T 1uzm_A 11 PPFVSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA 89 (247)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4578999999999999999999999999 8999999987432 23334433221
Q ss_pred C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccc
Q psy8786 235 A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 ~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+ ......++|+..+++|+.|++.++++++|.|++ .++||++||.++. +.+.
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------------- 149 (247)
T 1uzm_A 90 GLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGN-------------------- 149 (247)
T ss_dssp SCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----C--------------------
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCC--------------------
Confidence 1 123356899999999999999999999999965 3899999999874 2222
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------- 371 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------- 371 (484)
...|++||+|+++|++.++.|++++ ||+||+|+||+|+|++....
T Consensus 150 -----------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~ 208 (247)
T 1uzm_A 150 -----------------QANYAASKAGVIGMARSIARELSKA----NVTANVVAPGYIDTDMTRALDERIQQGALQFIPA 208 (247)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTT
T ss_pred -----------------ChhHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEEeCCCcccchhhcCHHHHHHHHhcCCC
Confidence 2789999999999999999999987 99999999999999975321
Q ss_pred -CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 209 ~~~~~~~dvA~~~~~l~s~~~~~~~G~~i--~vdgG~~ 244 (247)
T 1uzm_A 209 KRVGTPAEVAGVVSFLASEDASYISGAVI--PVDGGMG 244 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcCCEE--EECCCcc
Confidence 1268999999999999999999999998 6777753
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=244.53 Aligned_cols=185 Identities=15% Similarity=0.176 Sum_probs=149.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-------HHHHHHHHHhc-------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-------GAEAVQVLKDR------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-------~~~~~~~l~~~------------------- 234 (484)
..+|+||++|||||++|||+++|++|+++ |++|++++|+.++ +++..+++...
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~-Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 118 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKD-GANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISA 118 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHC-CCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 46789999999999999999999999999 8999999998653 33333333221
Q ss_pred -------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccch
Q psy8786 235 -------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITN 287 (484)
Q Consensus 235 -------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~ 287 (484)
.......++|+.++++|+.|++.++++++|+|++. ++||++||..+......
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~- 197 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWF- 197 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGT-
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCC-
Confidence 11234568999999999999999999999999764 89999999987432110
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc-ccCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY-VATN 366 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~-V~T~ 366 (484)
.+...|++||+|+++|++.++.|++ . ||+||+|+||+ |+|+
T Consensus 198 ---------------------------------~~~~~Y~aSKaal~~l~~~la~e~~-~----gIrvn~v~PG~~i~T~ 239 (346)
T 3kvo_A 198 ---------------------------------KQHCAYTIAKYGMSMYVLGMAEEFK-G----EIAVNALWPKTAIHTA 239 (346)
T ss_dssp ---------------------------------SSSHHHHHHHHHHHHHHHHHHHHTT-T----TCEEEEEECSBCBCCH
T ss_pred ---------------------------------CCchHHHHHHHHHHHHHHHHHHHhc-C----CcEEEEEeCCCccccH
Confidence 0127899999999999999999998 6 89999999995 9998
Q ss_pred CccCCC-------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 367 MSSFMG-------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 367 m~~~~~-------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+.+... ..+|+|+|+.++||+++ ++++||+.+ +|+++..
T Consensus 240 ~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i---vdgg~~~ 285 (346)
T 3kvo_A 240 AMDMLGGPGIESQCRKVDIIADAAYSIFQK-PKSFTGNFV---IDENILK 285 (346)
T ss_dssp HHHHHCC--CGGGCBCTHHHHHHHHHHHTS-CTTCCSCEE---EHHHHHH
T ss_pred HHHhhccccccccCCCHHHHHHHHHHHHhc-CCCCCceEE---ECCcEeh
Confidence 754322 37899999999999999 999999976 6776543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=239.34 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=149.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHH-----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLK----------------------------- 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~----------------------------- 232 (484)
+|+||++|||||++|||+++|++|+++ |++|++++ |+.++++++.+++.
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~-G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccc
Confidence 378999999999999999999999999 89999999 98776655444432
Q ss_pred ----------------hc-----------C------CCCcc--------------HHHHHHHHHhhhHHHHHHHHHHHHh
Q psy8786 233 ----------------DR-----------A------STVPF--------------AIQAEKTILTNYLGLVRTCVFLFPL 265 (484)
Q Consensus 233 ----------------~~-----------~------~~~~~--------------~~~~~~~~~vN~~g~~~l~~allp~ 265 (484)
+. + ..... .++|+..+++|+.|++.++++++|.
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~ 201 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 201 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 01122 6789999999999999999999999
Q ss_pred hhc--------CCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHH
Q psy8786 266 LRR--------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLT 337 (484)
Q Consensus 266 l~~--------~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt 337 (484)
|++ .++||++||..+..... +...|++||+|+++|+
T Consensus 202 m~~~~~~~~~~~g~IV~isS~~~~~~~~------------------------------------~~~~Y~asKaal~~l~ 245 (328)
T 2qhx_A 202 VAGTPAKHRGTNYSIINMVDAMTNQPLL------------------------------------GYTIYTMAKGALEGLT 245 (328)
T ss_dssp HHHSCGGGSCSCEEEEEECCTTTTSCCT------------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHhcCCcCCCCCcEEEEECchhhccCCC------------------------------------CcHHHHHHHHHHHHHH
Confidence 964 47999999998743211 1278999999999999
Q ss_pred HHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---------------CCCCHHhHHHHHHHHHhhhcccccccccccc
Q psy8786 338 RIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTF 402 (484)
Q Consensus 338 ~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~ 402 (484)
+.|+.|++++ ||+||+|+||+|+|++ ... ...+|+|+|+.++||+++.+.+++|+.+ .
T Consensus 246 ~~la~el~~~----gIrvn~v~PG~v~T~~-~~~~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i--~ 318 (328)
T 2qhx_A 246 RSAALELAPL----QIRVNGVGPGLSVLVD-DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV--K 318 (328)
T ss_dssp HHHHHHHGGG----TEEEEEEEESSBSCCC-CSCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE--E
T ss_pred HHHHHHHhhc----CcEEEEEecCcccCCc-cccHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEE--E
Confidence 9999999987 9999999999999998 321 2368999999999999999999999998 6
Q ss_pred ccceeec
Q psy8786 403 IPAIYTV 409 (484)
Q Consensus 403 ~~g~~~~ 409 (484)
+||++..
T Consensus 319 vdGG~~~ 325 (328)
T 2qhx_A 319 VDGGYSL 325 (328)
T ss_dssp ESTTGGG
T ss_pred ECCCccc
Confidence 7887743
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=236.05 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=151.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..++++..
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999 899999999987776655554321
Q ss_pred ----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHh--hhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPL--LRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~--l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+. .....++|+..+++|+.|++.++++++|. |++ .++||++||.++. +.+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~-------- 169 (277)
T 2rhc_B 98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVH-------- 169 (277)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTT--------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCC--------
Confidence 00 11245789999999999999999999998 754 3899999998874 2222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 170 -----------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~ 216 (277)
T 2rhc_B 170 -----------------------------AAPYSASKHGVVGFTKALGLELART----GITVNAVCPGFVETPMAASVRE 216 (277)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHTTT----EEEEEEEEECSBCSHHHHHHHH
T ss_pred -----------------------------CccHHHHHHHHHHHHHHHHHHHHHh----CcEEEEEecCcCcCchhhhhhh
Confidence 2789999999999999999999877 99999999999999974211
Q ss_pred ------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~--~vdGG~~ 275 (277)
T 2rhc_B 217 HYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQAL--NVCGGLG 275 (277)
T ss_dssp HHHHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTCC
T ss_pred hcccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEE--EECCCcc
Confidence 1268999999999999999999999998 6777763
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=232.03 Aligned_cols=184 Identities=21% Similarity=0.192 Sum_probs=150.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------------hc--
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------------DR-- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------------~~-- 234 (484)
.++|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++. +.
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g 85 (263)
T 3ak4_A 7 IFDLSGRKAIVTGGSKGIGAAIARALDKA-GATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALG 85 (263)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 46689999999999999999999999999 8999999998766554433221 00
Q ss_pred ---------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ---------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||..+. ..+.
T Consensus 86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 155 (263)
T 3ak4_A 86 GFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPL---------- 155 (263)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC----------
Confidence 10 11245789999999999999999999999864 4899999998874 2222
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----- 370 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----- 370 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|.|++...
T Consensus 156 ---------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~ 204 (263)
T 3ak4_A 156 ---------------------------LAHYSASKFAVFGWTQALAREMAPK----NIRVNCVCPGFVKTAMQEREIIWE 204 (263)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBTTHHHHHHHHHH
T ss_pred ---------------------------chhHHHHHHHHHHHHHHHHHHHhHc----CeEEEEEecccccChhhhhhcccc
Confidence 2789999999999999999999987 9999999999999987421
Q ss_pred ---------------------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 ---------------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ---------------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
....+|+|+|+.++||+++.+++++|+.+ .++|++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~--~vdgG~~ 261 (263)
T 3ak4_A 205 AELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGI--NVTGGVR 261 (263)
T ss_dssp HHHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESSSSS
T ss_pred ccccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE--EECcCEe
Confidence 01268999999999999999999999998 6777764
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=234.51 Aligned_cols=186 Identities=20% Similarity=0.309 Sum_probs=151.3
Q ss_pred CCCCCCEEEEEcCC--chHHHHHHHHHHhcCCCeEEEEecCchhH-HHHHHHHHhc------------------------
Q psy8786 182 VDPSERVAVVTGAN--KGLGFGIVKSLCEQFDGYIYLTARDKKKG-AEAVQVLKDR------------------------ 234 (484)
Q Consensus 182 ~~L~gKvaLITGas--sGIG~aiA~~La~~gga~Vvl~~R~~~~~-~~~~~~l~~~------------------------ 234 (484)
++++||++|||||+ +|||+++|++|+++ |++|++++|+.++. ++..+++...
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEM-GAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHT-SCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHC-CCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHH
Confidence 57899999999999 99999999999999 89999998875543 4444443321
Q ss_pred ---------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHH
Q psy8786 235 ---------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 ---------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
.......++|+..+++|+.|++.++++++|.|++ .++||++||.++......
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 169 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFP----- 169 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSS-----
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCC-----
Confidence 1123356899999999999999999999999965 489999999887422110
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
.+...|++||+|+++|+++++.|+++ .|+||+|+||+|+|++.+..
T Consensus 170 -----------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~-----~i~v~~v~PG~v~t~~~~~~ 215 (267)
T 3gdg_A 170 -----------------------------QEQTSYNVAKAGCIHMARSLANEWRD-----FARVNSISPGYIDTGLSDFV 215 (267)
T ss_dssp -----------------------------SCCHHHHHHHHHHHHHHHHHHHHTTT-----TCEEEEEEECCEECSCGGGS
T ss_pred -----------------------------CCCCcchHHHHHHHHHHHHHHHHhcc-----CcEEEEEECCccccchhhhC
Confidence 01278999999999999999999864 39999999999999997643
Q ss_pred CC---------------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 GN---------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ~~---------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.. .+|+|+|+.++||+++.+.++||+.+ .+||++..
T Consensus 216 ~~~~~~~~~~~~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i--~vdgG~~~ 266 (267)
T 3gdg_A 216 PKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADL--LIDGGYTT 266 (267)
T ss_dssp CHHHHHHHHTTSTTSSCEETHHHHHHHHHHHSTTCTTCCSCEE--EESTTGGG
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHhHhheeecCccccccCCEE--EECCceec
Confidence 21 56999999999999999999999999 78888753
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=232.87 Aligned_cols=183 Identities=22% Similarity=0.286 Sum_probs=143.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------------HHHHHHHHHhc-----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------------GAEAVQVLKDR----------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------------~~~~~~~l~~~----------- 234 (484)
.++++|++|||||++|||+++|++|+++ |++|++++|+.++ .+++.+++.+.
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nA 95 (253)
T 2nm0_A 17 RSHMSRSVLVTGGNRGIGLAIARAFADA-GDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANA 95 (253)
T ss_dssp ---CCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCTTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEEC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHhhccceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 5678999999999999999999999999 8999999986432 23334443321
Q ss_pred CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHhhccccccccc
Q psy8786 235 AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 ~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||.++.. .+..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------------------- 156 (253)
T 2nm0_A 96 GVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQ------------------- 156 (253)
T ss_dssp SCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHH-------------------
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCc-------------------
Confidence 11 12245789999999999999999999999864 48999999998743 2221
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------- 371 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------- 371 (484)
..|++||+|+++|++.++.|++++ ||+||+|+||+|+|++....
T Consensus 157 ------------------~~Y~asK~a~~~~~~~la~e~~~~----gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~ 214 (253)
T 2nm0_A 157 ------------------ANYAASKAGLVGFARSLARELGSR----NITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPL 214 (253)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHCSS----SEEEEEEEECSBCC---------CHHHHHTTCTT
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeCcCcCcchhhcCHHHHHHHHhcCCC
Confidence 689999999999999999999876 99999999999999986432
Q ss_pred -CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 215 ~~~~~p~dvA~~i~~l~s~~~~~~tG~~i--~vdGG~~ 250 (253)
T 2nm0_A 215 GRYARPEEIAATVRFLASDDASYITGAVI--PVDGGLG 250 (253)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCCcCcEE--EECCccc
Confidence 1268999999999999999999999998 6777753
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=232.17 Aligned_cols=184 Identities=20% Similarity=0.221 Sum_probs=150.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH---Hh---c----------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL---KD---R---------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l---~~---~---------------------- 234 (484)
+|++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++ .. .
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 468999999999999999999999999 899999999988777665555 10 0
Q ss_pred -------------CC------CCc----cHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCc-cccccchHH
Q psy8786 235 -------------AS------TVP----FAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAG-HLSQITNLE 289 (484)
Q Consensus 235 -------------~~------~~~----~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag-~~~~~~~~~ 289 (484)
+. ... ..++|+..+++|+.|++.++++++|.|++ +++||++||.++ .....
T Consensus 82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 157 (278)
T 1spx_A 82 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATP---- 157 (278)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCT----
T ss_pred HHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccccCCC----
Confidence 00 112 56789999999999999999999999864 599999999887 43211
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|.|++..
T Consensus 158 --------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~ 201 (278)
T 1spx_A 158 --------------------------------DFPYYSIAKAAIDQYTRNTAIDLIQH----GIRVNSISPGLVATGFGS 201 (278)
T ss_dssp --------------------------------TSHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCCCC--
T ss_pred --------------------------------CccHHHHHHHHHHHHHHHHHHHHHhc----CcEEEEEecCcccCcccc
Confidence 12789999999999999999999887 999999999999999853
Q ss_pred CC------------------------CCCCHHhHHHHHHHHHhhhccc-cccccccccccceeec
Q psy8786 370 FM------------------------GNVNIFDDSSTFNAFERVISHF-LIGQQINTFIPAIYTV 409 (484)
Q Consensus 370 ~~------------------------~~~~peevA~~~~~L~s~~a~~-itG~~i~~~~~g~~~~ 409 (484)
.. ...+|+|+|+.++||+++.+.+ ++|+.+ .++|++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~--~vdgG~~~ 264 (278)
T 1spx_A 202 AMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQL--VVDGGSSL 264 (278)
T ss_dssp ------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE--EESTTGGG
T ss_pred ccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHHcCccccCcccCcEE--EECCCccc
Confidence 21 1258999999999999988887 999998 67777644
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=233.25 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=142.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc-----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
++|++|||||++|||+++|++|+++ |++|+++ +|+.+..++..+++...
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 103 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQ-GWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG 103 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 6799999999999999999999999 8998776 77776666555544321
Q ss_pred ---------CCC---C----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 ---------AST---V----PFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 ---------~~~---~----~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+.. . ...++++.++++|+.|++.++++++|.|++ .++||++||.++. ..+..
T Consensus 104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------ 177 (272)
T 4e3z_A 104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQ------ 177 (272)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTT------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCC------
Confidence 111 1 245899999999999999999999999865 5799999998873 22211
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++.....
T Consensus 178 ------------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~ 223 (272)
T 4e3z_A 178 ------------------------------YVDYAASKAAIDTFTIGLAREVAAE----GIRVNAVRPGIIETDLHASGG 223 (272)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC--------
T ss_pred ------------------------------cchhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEecCCCcCCcccccC
Confidence 2679999999999999999999988 999999999999999864311
Q ss_pred ----------------CCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 373 ----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 373 ----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
..+|+|+|+.++||+++.+.+++|+.+ .++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i--~vdgG 271 (272)
T 4e3z_A 224 LPDRAREMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSIL--NVSGG 271 (272)
T ss_dssp ----------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTT
T ss_pred ChHHHHHHhhcCCcCCCcCHHHHHHHHHHHhCCccccccCCEE--eecCC
Confidence 156999999999999999999999998 55654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=224.65 Aligned_cols=177 Identities=19% Similarity=0.225 Sum_probs=147.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARD-GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999999 899999999998888777666421
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
.......++|+..+++|+.|++.++++++|.|++ ++++|+++|..+. ..+..
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~----------- 148 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPYG----------- 148 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTTC-----------
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCCc-----------
Confidence 1112356899999999999999999999999854 5899999988773 32222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN---- 373 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~---- 373 (484)
..|++||+|+++|+++++ +... |||||+|+||+|+|++......
T Consensus 149 --------------------------~~Y~~sKaa~~~~~~~l~--~~~~----~i~v~~v~PG~v~T~~~~~~~~~~~~ 196 (235)
T 3l77_A 149 --------------------------GGYVSTKWAARALVRTFQ--IENP----DVRFFELRPGAVDTYFGGSKPGKPKE 196 (235)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHH--HHCT----TSEEEEEEECSBSSSTTTCCSCCCGG
T ss_pred --------------------------chHHHHHHHHHHHHHHHh--hcCC----CeEEEEEeCCccccccccccCCcccc
Confidence 789999999999999994 3344 8999999999999999765432
Q ss_pred ---CCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 374 ---VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 374 ---~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
.+|+|+|+.+.||+++..++++|+.+ ..+++.
T Consensus 197 ~~~~~p~dva~~v~~l~~~~~~~~~~~~~--~~~~~~ 231 (235)
T 3l77_A 197 KGYLKPDEIAEAVRCLLKLPKDVRVEELM--LRSVYQ 231 (235)
T ss_dssp GTCBCHHHHHHHHHHHHTSCTTCCCCEEE--ECCTTS
T ss_pred cCCCCHHHHHHHHHHHHcCCCCCccceEE--Eeeccc
Confidence 68999999999999999999999987 556554
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=233.48 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=148.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH------------------HHHHhc----------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV------------------QVLKDR---------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~------------------~~l~~~---------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++.. +++.+.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~ 81 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNV 81 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEEC
Confidence 468999999999999999999999999 899999999876543221 111111
Q ss_pred -CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccc
Q psy8786 235 -AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 -~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+. .....++|+..+++|+.|++.++++++|.|++ .++||++||.++. ..+..
T Consensus 82 Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------------------ 143 (246)
T 2ag5_A 82 AGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVN------------------ 143 (246)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTT------------------
T ss_pred CccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCCC------------------
Confidence 11 11245889999999999999999999999854 4899999998874 22201
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--------------
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-------------- 370 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-------------- 370 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|.|++...
T Consensus 144 ------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~ 201 (246)
T 2ag5_A 144 ------------------RCVYSTTKAAVIGLTKSVAADFIQQ----GIRCNCVCPGTVDTPSLQERIQARGNPEEARND 201 (246)
T ss_dssp ------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCEECHHHHHHHHHSSSHHHHHHH
T ss_pred ------------------CccHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEeeCcCcCcchhhhhhcccCcHHHHHH
Confidence 2789999999999999999999987 9999999999999987432
Q ss_pred -------CCCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 -------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 -------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
....+|+|+|+.++||+++.+.+++|+.+ .+||++.
T Consensus 202 ~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i--~vdgG~~ 244 (246)
T 2ag5_A 202 FLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPV--IIDGGWS 244 (246)
T ss_dssp HHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEE--EECTTGG
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEE--EECCCcc
Confidence 01258999999999999999999999998 6787764
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=229.96 Aligned_cols=183 Identities=16% Similarity=0.111 Sum_probs=144.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHh----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKD---------------------------- 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~---------------------------- 233 (484)
+|+||++|||||++|||+++|++|+++ |++|++++| ++++++++.+++..
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 468999999999999999999999999 899999999 77665544433310
Q ss_pred ----c-----------C------CCCccH-----------HHHHHHHHhhhHHHHHHHHHHHHhhhc-C------CEEEE
Q psy8786 234 ----R-----------A------STVPFA-----------IQAEKTILTNYLGLVRTCVFLFPLLRR-H------ARVVN 274 (484)
Q Consensus 234 ----~-----------~------~~~~~~-----------~~~~~~~~vN~~g~~~l~~allp~l~~-~------grIV~ 274 (484)
. + ...... ++|+..+++|+.|++.++++++|.|++ . ++||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 0 0 011223 789999999999999999999999853 3 79999
Q ss_pred EeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeE
Q psy8786 275 LSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 354 (484)
Q Consensus 275 iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIr 354 (484)
+||..+..... +...|++||+|+++|+++++.|++++ ||+
T Consensus 167 isS~~~~~~~~------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~----gi~ 206 (276)
T 1mxh_A 167 LCDAMTDLPLP------------------------------------GFCVYTMAKHALGGLTRAAALELAPR----HIR 206 (276)
T ss_dssp ECCGGGGSCCT------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEE
T ss_pred ECchhhcCCCC------------------------------------CCeehHHHHHHHHHHHHHHHHHHhhc----CeE
Confidence 99988743211 12789999999999999999999988 999
Q ss_pred EEEEeCCcccCCCccC--------------CC-CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 355 INAVHPGYVATNMSSF--------------MG-NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 355 VNaV~PG~V~T~m~~~--------------~~-~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
||+|+||+|.|+ ... .. ..+|+|+|+.++||+++.+.+++|+.+ .++|++..
T Consensus 207 v~~v~PG~v~t~-~~~~~~~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~--~vdgG~~~ 273 (276)
T 1mxh_A 207 VNAVAPGLSLLP-PAMPQETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTL--KVDGGLIL 273 (276)
T ss_dssp EEEEEESSBSCC-SSSCHHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred EEEEecCcccCC-ccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCccccCccCcEE--EECCchhc
Confidence 999999999998 210 01 368999999999999999999999998 67777643
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=227.95 Aligned_cols=174 Identities=21% Similarity=0.209 Sum_probs=138.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|++|||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A 80 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAE-GKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA 80 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred CEEEEecCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence 68999999999999999999999 899999999988877665543211
Q ss_pred C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 235 A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 ~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +++||++||..+......
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------------------- 139 (230)
T 3guy_A 81 GSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQ--------------------- 139 (230)
T ss_dssp CCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTT---------------------
T ss_pred CcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCC---------------------
Confidence 0 012345899999999999999999999999976 469999999887432211
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------CCCHHhHH
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------NVNIFDDS 380 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------~~~peevA 380 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++..... ..+|+|+|
T Consensus 140 ---------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~dvA 200 (230)
T 3guy_A 140 ---------------ESTYCAVKWAVKGLIESVRLELKGK----PMKIIAVYPGGMATEFWETSGKSLDTSSFMSAEDAA 200 (230)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHTTTS----SCEEEEEEECCC----------------CCCHHHHH
T ss_pred ---------------CchhHHHHHHHHHHHHHHHHHHHhc----CeEEEEEECCcccChHHHhcCCCCCcccCCCHHHHH
Confidence 2789999999999999999999877 999999999999999976542 27899999
Q ss_pred HHHHHHHh-hhccccccccccc
Q psy8786 381 STFNAFER-VISHFLIGQQINT 401 (484)
Q Consensus 381 ~~~~~L~s-~~a~~itG~~i~~ 401 (484)
+.+.|+++ +.+.+++|+.+..
T Consensus 201 ~~i~~l~~~~~~~~itg~~~~~ 222 (230)
T 3guy_A 201 LMIHGALANIGNGYVSDITVNR 222 (230)
T ss_dssp HHHHHHCCEETTEEEEEEEEEC
T ss_pred HHHHHHHhCcCCCCccceeecC
Confidence 99999886 7888999998743
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=229.69 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=150.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999 899999999987666554443110
Q ss_pred -------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 -------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
+ ......++|+..+++|+.|++.++++++|.|++ +++||++||.++.....
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------- 146 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIE--------------- 146 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCT---------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcCCCC---------------
Confidence 1 112346899999999999999999999999965 38999999988743211
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC----------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF---------- 370 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~---------- 370 (484)
+...|++||+|+++|+++++.|++++ ..||+||+|+||+|.|++...
T Consensus 147 ---------------------~~~~Y~~sK~a~~~~~~~la~e~~~~--~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 203 (253)
T 1hxh_A 147 ---------------------QYAGYSASKAAVSALTRAAALSCRKQ--GYAIRVNSIHPDGIYTPMMQASLPKGVSKEM 203 (253)
T ss_dssp ---------------------TBHHHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEESEECCHHHHHHSCTTCCHHH
T ss_pred ---------------------CCccHHHHHHHHHHHHHHHHHHhhhc--CCCeEEEEEEeCCccCchhhhccchhhhHHH
Confidence 12789999999999999999999864 127999999999999987421
Q ss_pred ------C-C---CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 ------M-G---NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 ------~-~---~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. + ..+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 204 ~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~--~vdgG~~ 249 (253)
T 1hxh_A 204 VLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSEL--HADNSIL 249 (253)
T ss_dssp HBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEE--EESSSCT
T ss_pred HhhhhccCccCCCCCHHHHHHHHHHHcCccccCCCCcEE--EECCCcc
Confidence 0 0 158999999999999999999999998 6787764
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=257.35 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=145.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHH----------------------HHHHHHHhc----
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGA----------------------EAVQVLKDR---- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~----------------------~~~~~l~~~---- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+. +... ++++++.+.
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~-Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~i 396 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKY-GAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTI 396 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCC
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHC-CCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999 89999988632 1111 111111111
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
.....+.++|+.++++|+.|+++++++++|+|++ +|+|||+||.++. +.+.
T Consensus 397 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~------------- 463 (604)
T 2et6_A 397 DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFG------------- 463 (604)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTT-------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCC-------------
Confidence 1123456899999999999999999999999964 4899999999873 3322
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------C
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------G 372 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------~ 372 (484)
+..|++||+|+.+|+++|+.|++++ |||||+|+||. +|+|.... .
T Consensus 464 ------------------------~~~Y~asKaal~~lt~~la~El~~~----gIrVn~v~PG~-~T~m~~~~~~~~~~~ 514 (604)
T 2et6_A 464 ------------------------QANYSSSKAGILGLSKTMAIEGAKN----NIKVNIVAPHA-ETAMTLSIMREQDKN 514 (604)
T ss_dssp ------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECC-CCCC---------CC
T ss_pred ------------------------ChhHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEcCCC-CCccccccCchhhcc
Confidence 2789999999999999999999988 99999999995 99986532 2
Q ss_pred CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+++.+. +||+.+ .++|++..
T Consensus 515 ~~~pe~vA~~v~~L~s~~~~-itG~~~--~vdGG~~~ 548 (604)
T 2et6_A 515 LYHADQVAPLLVYLGTDDVP-VTGETF--EIGGGWIG 548 (604)
T ss_dssp SSCGGGTHHHHHHTTSTTCC-CCSCEE--EEETTEEE
T ss_pred CCCHHHHHHHHHHHhCCccC-CCCcEE--EECCCeeE
Confidence 26899999999999999999 999999 67887753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=227.47 Aligned_cols=179 Identities=21% Similarity=0.229 Sum_probs=145.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh---------------------------c--
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---------------------------R-- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~---------------------------~-- 234 (484)
|+||++|||||++|||+++|++|+++ |++|++++|+.+ ++..+++.. .
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARA-GANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999 899999999764 222222211 0
Q ss_pred ---------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccc-cccchHHHHHHHhh
Q psy8786 235 ---------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHL-SQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~-~~~~~~~~~~~~~~ 296 (484)
+. .....++|+..+++|+.|++.++++++|.|++. ++||++||.++.. .+.
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 147 (255)
T 2q2v_A 79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTG----------- 147 (255)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCC-----------
Confidence 11 112458899999999999999999999999653 7999999988743 222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC------
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------ 370 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------ 370 (484)
...|++||+|+++++++++.|++++ ||+||+|+||+|.|++...
T Consensus 148 --------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~ 197 (255)
T 2q2v_A 148 --------------------------KAAYVAAKHGVVGLTKVVGLETATS----NVTCNAICPGWVLTPLVQKQIDDRA 197 (255)
T ss_dssp --------------------------BHHHHHHHHHHHHHHHHHHHHTTTS----SEEEEEEEESSBCCHHHHHHHHHHH
T ss_pred --------------------------chhHHHHHHHHHHHHHHHHHHhccc----CcEEEEEeeCCCcCcchhhhccccc
Confidence 2789999999999999999999877 9999999999999986321
Q ss_pred --------------C------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 371 --------------M------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 371 --------------~------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
. ...+|+|+|+.++||+++.+++++|+.+ .++|++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~--~vdgG~~ 253 (255)
T 2q2v_A 198 ANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAW--NVDGGWL 253 (255)
T ss_dssp HHTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTGG
T ss_pred ccccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEE--EECCCcc
Confidence 0 1258999999999999999999999998 6777763
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=222.58 Aligned_cols=182 Identities=18% Similarity=0.191 Sum_probs=147.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH------------------HHHHHHHHhc-------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG------------------AEAVQVLKDR------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~------------------~~~~~~l~~~------------- 234 (484)
+|++|||||++|||+++|++|+++ |++|++++|+.++. +++.+++.+.
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 80 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVAR-GYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAAAV 80 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 589999999999999999999999 89999999986542 2222222211
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccccccccc
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
.....+.++|+..+++|+.|++.++++++|.|++ .++||++||..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------------------- 138 (239)
T 2ekp_A 81 NVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGP---------------------- 138 (239)
T ss_dssp CCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------------------
T ss_pred CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCC----------------------
Confidence 1122356899999999999999999999999865 489999999887432100
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------------
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----------------- 371 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----------------- 371 (484)
.+...|++||+|+++++++++.|++++ ||+||+|+||+|.|++....
T Consensus 139 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~ 202 (239)
T 2ekp_A 139 ------------VPIPAYTTAKTALLGLTRALAKEWARL----GIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMG 202 (239)
T ss_dssp ------------SCCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTS
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCC
Confidence 012789999999999999999999988 99999999999999985321
Q ss_pred CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+++++|+.+ .+||++.
T Consensus 203 ~~~~~~dvA~~~~~l~s~~~~~~tG~~~--~vdgG~~ 237 (239)
T 2ekp_A 203 RWARPEEIARVAAVLCGDEAEYLTGQAV--AVDGGFL 237 (239)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTTT
T ss_pred CCcCHHHHHHHHHHHcCchhcCCCCCEE--EECCCcc
Confidence 1268999999999999999999999998 6777763
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=226.90 Aligned_cols=175 Identities=19% Similarity=0.172 Sum_probs=142.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKA-GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999 899999999987665554443210
Q ss_pred --------CC---------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHH
Q psy8786 235 --------AS---------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLE 289 (484)
Q Consensus 235 --------~~---------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~ 289 (484)
.. .....++|+.++++|+.+++.++++++|.|++ .|+||++||.++.....
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 157 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMF---- 157 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCCS----
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCCC----
Confidence 11 01233679999999999999999999999864 48999999988743211
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|+|..
T Consensus 158 ---------------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~ 200 (260)
T 2qq5_A 158 ---------------------------------NVPYGVGKAACDKLAADCAHELRRH----GVSCVSLWPGIVQTELLK 200 (260)
T ss_dssp ---------------------------------SHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEECCCSCTTTC-
T ss_pred ---------------------------------CCchHHHHHHHHHHHHHHHHHhccC----CeEEEEEecCccccHHHH
Confidence 2689999999999999999999987 999999999999999854
Q ss_pred CCC----------------C----CCHHhHHHHHHHHHhhhc-ccccccccc
Q psy8786 370 FMG----------------N----VNIFDDSSTFNAFERVIS-HFLIGQQIN 400 (484)
Q Consensus 370 ~~~----------------~----~~peevA~~~~~L~s~~a-~~itG~~i~ 400 (484)
... + .+|+|+|+.++||+++.+ .++||+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~ 252 (260)
T 2qq5_A 201 EHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGKVLP 252 (260)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEE
T ss_pred HhhccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCcccccccceeec
Confidence 310 0 369999999999999886 599999873
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=225.94 Aligned_cols=185 Identities=13% Similarity=0.164 Sum_probs=148.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH----------------HHHHHHHhc-------CC-
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA----------------EAVQVLKDR-------AS- 236 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~----------------~~~~~l~~~-------~~- 236 (484)
..+++||++|||||++|||+++|++|+++ |++|++++|+.+..+ ++.+++... +.
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~~ 92 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQE-GAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP 92 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 35679999999999999999999999999 899999999864332 222222111 10
Q ss_pred -----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 237 -----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 237 -----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
.....++|+..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------ 148 (249)
T 1o5i_A 93 KAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIE------------------------ 148 (249)
T ss_dssp CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT------------------------
T ss_pred CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCC------------------------
Confidence 12245889999999999999999999999965 37999999988743211
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------------CC
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----------------GN 373 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----------------~~ 373 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|+|++.... ..
T Consensus 149 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~p~~~~ 212 (249)
T 1o5i_A 149 ------------NLYTSNSARMALTGFLKTLSFEVAPY----GITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRM 212 (249)
T ss_dssp ------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSC
T ss_pred ------------CCchHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCCCccCcccccchhhHHHHHHhcCCCCCC
Confidence 12789999999999999999999987 99999999999999975311 12
Q ss_pred CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 374 VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 374 ~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 213 ~~~~dvA~~i~~l~s~~~~~~tG~~~--~vdgG~~ 245 (249)
T 1o5i_A 213 AKPEEIASVVAFLCSEKASYLTGQTI--VVDGGLS 245 (249)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTCC
T ss_pred cCHHHHHHHHHHHcCccccCCCCCEE--EECCCcc
Confidence 58999999999999999999999998 6777764
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-27 Score=227.57 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=147.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH---------------------HHHhc-----------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ---------------------VLKDR----------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~---------------------~l~~~----------- 234 (484)
|++|||||++|||+++|++|+++ |++|++++|+.+++++..+ ++.+.
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nA 80 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSND 80 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred eEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 78999999999999999999999 8999999998776554332 11110
Q ss_pred CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHHHhhcccccccc
Q psy8786 235 AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+.. ....++|+..+++|+.|++.++++++|.|++ .++||++||..+.. .+.
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------------- 141 (254)
T 1zmt_A 81 IFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKE------------------- 141 (254)
T ss_dssp CCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTT-------------------
T ss_pred CcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCC-------------------
Confidence 111 1245889999999999999999999999965 48999999998843 222
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc---------cCCCccCC----
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV---------ATNMSSFM---- 371 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V---------~T~m~~~~---- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+| +|++....
T Consensus 142 ------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~ 199 (254)
T 1zmt_A 142 ------------------LSTYTSARAGACTLANALSKELGEY----NIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHV 199 (254)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHH
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecCccccccccccCCCcccccChHHH
Confidence 2789999999999999999999987 999999999999 88875431
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.++||+++.+.+++|+.+ .+||++..
T Consensus 200 ~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~--~vdgG~~~ 245 (254)
T 1zmt_A 200 AHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVF--WLAGGFPM 245 (254)
T ss_dssp HHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEE--EESTTCCC
T ss_pred HHHhccCCCCCCcCHHHHHHHHHHHhCcccCCccCCEE--EECCCchh
Confidence 1268999999999999999999999998 67887643
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=222.93 Aligned_cols=186 Identities=23% Similarity=0.240 Sum_probs=143.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 9 ~~~l~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 9 RWSLKAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999 899999999977666554443211
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+ ......++++..+++|+.|++.++++++|.|++ .++||++||..+......
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------- 160 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASV------- 160 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCC-------
Confidence 0 012245789999999999999999999999864 489999999887432111
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
...|++||++++.+++.++.+++++ ||+||+|+||+|.|++....
T Consensus 161 -----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~ 207 (266)
T 1xq1_A 161 -----------------------------GSIYSATKGALNQLARNLACEWASD----GIRANAVAPAVIATPLAEAVYD 207 (266)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEECCSCC---------
T ss_pred -----------------------------CchHHHHHHHHHHHHHHHHHHHhHh----CcEEEEEeeCCCccchhhhhcC
Confidence 2689999999999999999999887 99999999999999985431
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+.||+++.+.+++|+.+ .++|++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~~~ 257 (266)
T 1xq1_A 208 DEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTI--CVDGGLTV 257 (266)
T ss_dssp ----------------CCGGGGHHHHHHHTSGGGTTCCSCEE--ECCCCEEE
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEE--EEcCCccc
Confidence 1158999999999999999999999998 67877753
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-27 Score=227.34 Aligned_cols=176 Identities=13% Similarity=0.044 Sum_probs=145.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---------------hHHHHHHHHHhc-----------C--
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---------------KGAEAVQVLKDR-----------A-- 235 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---------------~~~~~~~~l~~~-----------~-- 235 (484)
..+|++|||||++|||+++|++|+++ |++|++++|+.+ ..+++.+++.+. +
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~ 98 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSK-SWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGW 98 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCC
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 35799999999999999999999999 899999998753 234455555432 1
Q ss_pred -----CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccc
Q psy8786 236 -----STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 236 -----~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
......++++..+++|+.|++.+++++++.|+++|+||++||..+. +.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------------------------ 154 (251)
T 3orf_A 99 SGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSG------------------------ 154 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT------------------------
T ss_pred CCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCC------------------------
Confidence 1233468999999999999999999999999888999999999874 2222
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh--hhcCCCCeEEEEEeCCcccCCCccCCC-------CCCHHhHH
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD--CELGNQDKVINAVHPGYVATNMSSFMG-------NVNIFDDS 380 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela--~~~~~~gIrVNaV~PG~V~T~m~~~~~-------~~~peevA 380 (484)
...|++||+|+++++++++.|++ ++ ||+||+|+||+|+|++..... ..+|+|+|
T Consensus 155 -------------~~~Y~~sKaa~~~~~~~la~e~~~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~dva 217 (251)
T 3orf_A 155 -------------MIAYGATKAATHHIIKDLASENGGLPA----GSTSLGILPVTLDTPTNRKYMSDANFDDWTPLSEVA 217 (251)
T ss_dssp -------------BHHHHHHHHHHHHHHHHHTSTTSSSCT----TCEEEEEEESCBCCHHHHHHCTTSCGGGSBCHHHHH
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHhcccCC----CcEEEEEecCcCcCcchhhhcccccccccCCHHHHH
Confidence 27899999999999999999976 55 999999999999999864322 26899999
Q ss_pred HHHHHHHhh-hccccccccccc
Q psy8786 381 STFNAFERV-ISHFLIGQQINT 401 (484)
Q Consensus 381 ~~~~~L~s~-~a~~itG~~i~~ 401 (484)
+.+++|+++ .+.+++|+.+..
T Consensus 218 ~~i~~l~~~~~~~~~tG~~i~v 239 (251)
T 3orf_A 218 EKLFEWSTNSDSRPTNGSLVKF 239 (251)
T ss_dssp HHHHHHHHCGGGCCCTTCEEEE
T ss_pred HHHHHHhcCccccCCcceEEEE
Confidence 999999999 899999998843
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=221.29 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=149.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
+++++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~l~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 3d3w_A 2 ELFLAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CCCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred ccccCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence 45789999999999999999999999999 899999999987766554432110
Q ss_pred ----CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 ----AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ----~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
+. .....++++..+++|+.+++.+++++.+.|++ .++||++||..+.....
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 144 (244)
T 3d3w_A 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT---------------- 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT----------------
T ss_pred EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCC----------------
Confidence 10 11235789999999999999999999999864 47999999988743211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
+...|++||++++++++.++.|++++ ||+||+|+||+|.|++....
T Consensus 145 --------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~ 200 (244)
T 3d3w_A 145 --------------------NHSVYCSTKGALDMLTKVMALELGPH----KIRVNAVNPTVVMTSMGQATWSDPHKAKTM 200 (244)
T ss_dssp --------------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBTTTTHHHHSCSTTHHHHH
T ss_pred --------------------CCchHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeccccccchhhhccChHHHHHH
Confidence 12789999999999999999999887 99999999999999975311
Q ss_pred -------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+++++++.+.+++|+.+ .+++++
T Consensus 201 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~ 241 (244)
T 3d3w_A 201 LNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL--PVEGGF 241 (244)
T ss_dssp HHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTG
T ss_pred HhhCCCCCCcCHHHHHHHHHHHcCccccCCCCCEE--EECCCc
Confidence 1258999999999999988899999988 566665
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=226.22 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=145.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----------------HHHHHHHHHh-----c------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----------------GAEAVQVLKD-----R------ 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----------------~~~~~~~l~~-----~------ 234 (484)
..++|++|||||++|||+++|++|+++ |++|++++|+.++ .+++.+++.+ .
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~ 82 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILC 82 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 457899999999999999999999999 8999999997532 2233333321 1
Q ss_pred --CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 --AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 --~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+. .....++++..+++|+.+++.++++++|.|+++++||++||.++.....
T Consensus 83 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------- 142 (241)
T 1dhr_A 83 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP-------------------- 142 (241)
T ss_dssp CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT--------------------
T ss_pred cccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCC--------------------
Confidence 10 2334588999999999999999999999998789999999988743211
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh--hhcCCCCeEEEEEeCCcccCCCccCC-------CCCCH
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD--CELGNQDKVINAVHPGYVATNMSSFM-------GNVNI 376 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela--~~~~~~gIrVNaV~PG~V~T~m~~~~-------~~~~p 376 (484)
+...|++||+|+++|+++++.|++ ++ ||+||+|+||+|+|++.... ...+|
T Consensus 143 ----------------~~~~Y~asK~a~~~~~~~la~e~~~~~~----gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 202 (241)
T 1dhr_A 143 ----------------GMIGYGMAKGAVHQLCQSLAGKNSGMPS----GAAAIAVLPVTLDTPMNRKSMPEADFSSWTPL 202 (241)
T ss_dssp ----------------TBHHHHHHHHHHHHHHHHHTSTTSSCCT----TCEEEEEEESCEECHHHHHHSTTSCGGGSEEH
T ss_pred ----------------CchHHHHHHHHHHHHHHHHHHHhccCCC----CeEEEEEecCcccCccccccCcchhhccCCCH
Confidence 127899999999999999999887 65 99999999999999986431 12578
Q ss_pred HhHHHHHHHHHhhhccccccccccccccce
Q psy8786 377 FDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 377 eevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
+|+|+.+++++++.+.+++|+.+ .++|+
T Consensus 203 ~~vA~~v~~l~~~~~~~~~G~~~--~v~g~ 230 (241)
T 1dhr_A 203 EFLVETFHDWITGNKRPNSGSLI--QVVTT 230 (241)
T ss_dssp HHHHHHHHHHHTTTTCCCTTCEE--EEEEE
T ss_pred HHHHHHHHHHhcCCCcCccceEE--EEeCC
Confidence 99999999999999999999988 45554
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=221.71 Aligned_cols=185 Identities=18% Similarity=0.188 Sum_probs=150.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++| +.++.++..+++...
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 899999999 766555544443210
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
+. .....++++..+++|+.+++.+++++++.|++ .++||++||..+.....
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------- 153 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWP-------- 153 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCC--------
Confidence 10 11245889999999999999999999999875 47999999987732211
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-- 371 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-- 371 (484)
+...|++||+|++.+++.++.|++++ ||+||+|+||+|.|++....
T Consensus 154 ----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~ 201 (261)
T 1gee_A 154 ----------------------------LFVHYAASKGGMKLMTETLALEYAPK----GIRVNNIGPGAINTPINAEKFA 201 (261)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSGGGHHHHH
T ss_pred ----------------------------CccHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCcCCchhhhccc
Confidence 12789999999999999999999887 99999999999999975321
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+++|+++.+.+++|+.+ .++|++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~~~ 252 (261)
T 1gee_A 202 DPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITL--FADGGMTL 252 (261)
T ss_dssp SHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred ChhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEE--EEcCCccc
Confidence 1268999999999999998999999988 67777643
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=223.39 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=141.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHh---cCCCeEEEEecCchhHHHHHHHHH--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCE---QFDGYIYLTARDKKKGAEAVQVLK-------------------------- 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~---~gga~Vvl~~R~~~~~~~~~~~l~-------------------------- 232 (484)
.+|+||++|||||++|||+++|++|++ + |++|++++|+.+++++..+++.
T Consensus 2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (259)
T 1oaa_A 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSP-GSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCT-TCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHhhcC-CCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHH
Confidence 357899999999999999999999998 7 8999999999776655444332
Q ss_pred ---h----------c-----CCC----C-----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC----CEEEEEeCCCcc
Q psy8786 233 ---D----------R-----AST----V-----PFAIQAEKTILTNYLGLVRTCVFLFPLLRRH----ARVVNLSSSAGH 281 (484)
Q Consensus 233 ---~----------~-----~~~----~-----~~~~~~~~~~~vN~~g~~~l~~allp~l~~~----grIV~iSS~ag~ 281 (484)
+ . +.. . ...++|+..+++|+.|++.++++++|.|++. |+||++||.++.
T Consensus 81 ~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~ 160 (259)
T 1oaa_A 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred HHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc
Confidence 1 0 000 1 2458899999999999999999999999653 799999999874
Q ss_pred ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q psy8786 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361 (484)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG 361 (484)
.... +...|++||+|+++|+++++.|++ +||||+|+||
T Consensus 161 ~~~~------------------------------------~~~~Y~asKaa~~~~~~~la~e~~------~i~vn~v~PG 198 (259)
T 1oaa_A 161 QPYK------------------------------------GWGLYCAGKAARDMLYQVLAAEEP------SVRVLSYAPG 198 (259)
T ss_dssp SCCT------------------------------------TCHHHHHHHHHHHHHHHHHHHHCT------TEEEEEEECC
T ss_pred CCCC------------------------------------CccHHHHHHHHHHHHHHHHHhhCC------CceEEEecCC
Confidence 2211 127899999999999999999874 4999999999
Q ss_pred cccCCCccC--------------------CCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 362 YVATNMSSF--------------------MGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 362 ~V~T~m~~~--------------------~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
+|+|+|... ....+|+|+|+.++||+++ ++++||+.+
T Consensus 199 ~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~-~~~itG~~i 255 (259)
T 1oaa_A 199 PLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK-DTFQSGAHV 255 (259)
T ss_dssp SBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH-CCSCTTEEE
T ss_pred CcCcchHHHHhhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhh-ccccCCcEE
Confidence 999998542 1237999999999999985 789999987
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=252.75 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=146.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec---------CchhHHHHHHHHHhc------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR---------DKKKGAEAVQVLKDR------------------ 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R---------~~~~~~~~~~~l~~~------------------ 234 (484)
++|+||+||||||++|||+++|++|+++ |++|++++| +.+.+++..+++...
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~-Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~ 93 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAER-GAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVI 93 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHH
Confidence 5789999999999999999999999999 899999987 666666666665432
Q ss_pred -----------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchH
Q psy8786 235 -----------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 -----------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~ 288 (484)
.....+.++|+.++++|+.|+++++++++|+|++. |+||++||.++. +.+.
T Consensus 94 ~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~--- 170 (613)
T 3oml_A 94 ETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFG--- 170 (613)
T ss_dssp C----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCTT---
T ss_pred HHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC---
Confidence 11233568999999999999999999999999764 799999998873 3222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+++|+++|+.|++++ ||+||+|+||.+ |+|.
T Consensus 171 ----------------------------------~~~Y~asKaal~~lt~~la~e~~~~----gI~vn~v~Pg~~-t~~~ 211 (613)
T 3oml_A 171 ----------------------------------QVNYTAAKMGLIGLANTVAIEGARN----NVLCNVIVPTAA-SRMT 211 (613)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEEC-------
T ss_pred ----------------------------------ChHHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEECCCC-Chhh
Confidence 2789999999999999999999988 999999999975 6665
Q ss_pred cCCC------CCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 369 SFMG------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 369 ~~~~------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
.... ..+|+|+|+.++||+++. .+++|+.+ .++|++...
T Consensus 212 ~~~~~~~~~~~~~pedvA~~v~~L~s~~-~~~tG~~i--~vdGG~~~~ 256 (613)
T 3oml_A 212 EGILPDILFNELKPKLIAPVVAYLCHES-CEDNGSYI--ESAAGWATK 256 (613)
T ss_dssp CCCCCHHHHTTCCGGGTHHHHHHTTSTT-CCCCSCEE--EEETTEEEE
T ss_pred hhccchhhhhcCCHHHHHHHHHHhcCCC-cCCCceEE--EECCCeEEE
Confidence 5432 278999999999999998 89999999 778887654
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=223.69 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=146.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----------------hHHHHHHHHHhc-----------C
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----------------KGAEAVQVLKDR-----------A 235 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----------------~~~~~~~~l~~~-----------~ 235 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|+.+ ..+++++++.+. +
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag 83 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDE-GSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG 83 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 478999999999999999999999999 899999988642 233344443321 1
Q ss_pred ------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccccccccc
Q psy8786 236 ------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 236 ------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
......++|+..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------- 141 (264)
T 2dtx_A 84 IESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITK---------------------- 141 (264)
T ss_dssp CCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCT----------------------
T ss_pred CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCC----------------------
Confidence 112356899999999999999999999999965 48999999988743211
Q ss_pred cccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------------
Q psy8786 308 ITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------------- 371 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------------- 371 (484)
+...|++||+|+++|+++++.|+++ . |+||+|+||+|+|++....
T Consensus 142 --------------~~~~Y~~sK~a~~~~~~~la~e~~~----~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~ 202 (264)
T 2dtx_A 142 --------------NASAYVTSKHAVIGLTKSIALDYAP----L-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKI 202 (264)
T ss_dssp --------------TBHHHHHHHHHHHHHHHHHHHHHTT----T-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHhcC----C-cEEEEEEeCCCcCcchhhhhhcccccCchhhHHHH
Confidence 1278999999999999999998864 3 9999999999999874211
Q ss_pred ----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 203 ~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i--~vdGG~~ 247 (264)
T 2dtx_A 203 SEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCL--YVDGGLS 247 (264)
T ss_dssp HHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEE--EECCCcc
Confidence 1268999999999999999999999998 6787764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=219.37 Aligned_cols=183 Identities=21% Similarity=0.287 Sum_probs=149.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------------------------c--
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------------------------R-- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------------------------~-- 234 (484)
++++|++|||||++|||+++|++|+++ |++|++++|+.+..++..+++.. .
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999 89999999997766554443321 0
Q ss_pred ---------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ---------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+ ......++++..+++|+.|++.+++++++.|++. ++||++||..+.....
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------- 150 (251)
T 1zk4_A 82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDP----------- 150 (251)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCC-----------
Confidence 1 1123468899999999999999999999998753 6999999988743211
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh--hhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD--CELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela--~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
+...|++||++++.++++++.|+. .. ||+||+|+||+|.|++.....
T Consensus 151 -------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~~----~i~v~~v~Pg~v~t~~~~~~~~~ 201 (251)
T 1zk4_A 151 -------------------------SLGAYNASKGAVRIMSKSAALDCALKDY----DVRVNTVHPGYIKTPLVDDLPGA 201 (251)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHHHHHHHHTTC----SEEEEEEEECCBCCHHHHTSTTH
T ss_pred -------------------------CCccchHHHHHHHHHHHHHHHHhcccCC----CeEEEEEeeCcCcchhhhhcCch
Confidence 127899999999999999999987 55 999999999999998754321
Q ss_pred --------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 --------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 --------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.+++++.+.+++|+.+ .++|++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~~ 249 (251)
T 1zk4_A 202 EEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEF--VVDGGYT 249 (251)
T ss_dssp HHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred hhhHHHhhcCCCCCCcCHHHHHHHHHHHcCcccccccCcEE--EECCCcc
Confidence 158999999999999999999999988 6777763
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=221.85 Aligned_cols=172 Identities=21% Similarity=0.235 Sum_probs=137.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 79 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV 79 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 68999999999999999999999 899999999988777665554211
Q ss_pred ---CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 ---AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ---~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+.. ..+.++|+..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 80 nnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------------- 142 (248)
T 3asu_A 80 NNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA----------------- 142 (248)
T ss_dssp ECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----------------
T ss_pred ECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCC-----------------
Confidence 111 1235889999999999999999999999954 48999999988742211
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc-CCCccCC----------
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA-TNMSSFM---------- 371 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~-T~m~~~~---------- 371 (484)
+...|++||+|+++|+++++.|++++ |||||+|+||+|+ |++....
T Consensus 143 -------------------~~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~ 199 (248)
T 3asu_A 143 -------------------GGNVYGATKAFVRQFSLNLRTDLHGT----AVRVTDIEPGLVGGTEFSNVRFKGDDGKAEK 199 (248)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHTTTS----CCEEEEEEECSBCC-----------------
T ss_pred -------------------CCchHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEeccccccCcchhhcccCchHHHHH
Confidence 12789999999999999999999877 9999999999999 9985310
Q ss_pred -----CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 -----GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 -----~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
.+.+|+|+|+.++||+++ ..+++|+.+.
T Consensus 200 ~~~~~~~~~p~dvA~~v~~l~s~-~~~~~g~~i~ 232 (248)
T 3asu_A 200 TYQNTVALTPEDVSEAVWWVSTL-PAHVNINTLE 232 (248)
T ss_dssp -----CCBCHHHHHHHHHHHHHS-CTTCCCCEEE
T ss_pred HHhccCCCCHHHHHHHHHHHhcC-CccceeeEEE
Confidence 136899999999999986 5788999873
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=224.48 Aligned_cols=182 Identities=21% Similarity=0.225 Sum_probs=147.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999998 899999999877766655544321
Q ss_pred -----------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+ ......++++..+++|+.|++.+++++++.|++ .++||++||.++. +.+.
T Consensus 119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 189 (285)
T 2c07_A 119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVG--------- 189 (285)
T ss_dssp CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT---------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCC---------
Confidence 0 112355889999999999999999999999864 3799999998773 2222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
...|++||+|++.++++++.|+++. ||+||+|+||+|+|++.....
T Consensus 190 ----------------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 237 (285)
T 2c07_A 190 ----------------------------QANYSSSKAGVIGFTKSLAKELASR----NITVNAIAPGFISSDMTDKISEQ 237 (285)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCC-----CCHH
T ss_pred ----------------------------CchHHHHHHHHHHHHHHHHHHHHHh----CcEEEEEEeCcEecCchhhcCHH
Confidence 2789999999999999999999887 999999999999999865321
Q ss_pred -------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.+++++++.+.+++|+.+ .++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i--~v~gG~ 283 (285)
T 2c07_A 238 IKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVF--VIDGGL 283 (285)
T ss_dssp HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTS
T ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCEE--EeCCCc
Confidence 258999999999999999999999988 567765
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=218.65 Aligned_cols=187 Identities=22% Similarity=0.236 Sum_probs=151.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 6 ~~~~~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (254)
T 2wsb_A 6 VFRLDGACAAVTGAGSGIGLEICRAFAAS-GARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVA 84 (254)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhC
Confidence 46789999999999999999999999999 899999999977665544433110
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.......++++..+++|+.|++.++++++|.|++ .++||++||..+......
T Consensus 85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------- 153 (254)
T 2wsb_A 85 PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRP----------- 153 (254)
T ss_dssp CCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS-----------
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCC-----------
Confidence 0112245789999999999999999999999865 489999999887422110
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
.+...|++||++++.+++.++.|++++ ||+||+|+||++.|++....
T Consensus 154 -----------------------~~~~~Y~~sK~a~~~~~~~~~~~~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~ 206 (254)
T 2wsb_A 154 -----------------------QFASSYMASKGAVHQLTRALAAEWAGR----GVRVNALAPGYVATEMTLKMRERPEL 206 (254)
T ss_dssp -----------------------SCBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCSHHHHHHHTCHHH
T ss_pred -----------------------CcchHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEEecccCchhhhccccChHH
Confidence 112689999999999999999999887 99999999999999975311
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+++++++.+.+++|+.+ .++|++.
T Consensus 207 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~~ 252 (254)
T 2wsb_A 207 FETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAIL--AVDGGYT 252 (254)
T ss_dssp HHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhCcccccccCCEE--EECCCEe
Confidence 1268999999999999998999999988 6677653
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=218.77 Aligned_cols=183 Identities=18% Similarity=0.205 Sum_probs=145.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 5689999999999999999999999999 899999999876655444332110
Q ss_pred --------CCC------------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCccccccc
Q psy8786 235 --------AST------------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGHLSQIT 286 (484)
Q Consensus 235 --------~~~------------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~~~~~~ 286 (484)
+.. ....++++..+++|+.+++.+++++.+.|++ .++||++||..+.....
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~- 165 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV- 165 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT-
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCC-
Confidence 100 1356889999999999999999999999864 37999999987732211
Q ss_pred hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
+...|++||+|++++++.++.|++++ ||+||+|+||+|+|+
T Consensus 166 -----------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~ 206 (265)
T 2o23_A 166 -----------------------------------GQAAYSASKGGIVGMTLPIARDLAPI----GIRVMTIAPGLFGTP 206 (265)
T ss_dssp -----------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCC
T ss_pred -----------------------------------CCchhHHHHHHHHHHHHHHHHHHhhc----CcEEEEEEeccccCc
Confidence 12789999999999999999999887 999999999999999
Q ss_pred CccCC----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 367 MSSFM----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 367 m~~~~----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+.... ...+|+|+|+.++|+++ +.+++|+.+ .++|++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~--~~~~~G~~i--~vdgG~~~ 261 (265)
T 2o23_A 207 LLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIE--NPFLNGEVI--RLDGAIRM 261 (265)
T ss_dssp ----------CHHHHTCSSSCSCBCHHHHHHHHHHHHH--CTTCCSCEE--EESTTCCC
T ss_pred cccccCHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhh--cCccCceEE--EECCCEec
Confidence 86431 12589999999999984 579999998 67887753
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=240.63 Aligned_cols=183 Identities=22% Similarity=0.203 Sum_probs=145.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch--hHHHHHH----------------------HHHhc---
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK--KGAEAVQ----------------------VLKDR--- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~--~~~~~~~----------------------~l~~~--- 234 (484)
..++||++|||||++|||+++|+.|+++ |++|++++|+.. .+++..+ ++.+.
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~-Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~ 287 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARD-GATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGG 287 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTT
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHC-CCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999 899999998642 2222222 11111
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
.....+.++|+.++++|+.|++++++++.+.|++ .++||++||.++. +.+.
T Consensus 288 ~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g----------- 356 (454)
T 3u0b_A 288 KVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRG----------- 356 (454)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTT-----------
T ss_pred CceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCC-----------
Confidence 0012345899999999999999999999998764 5899999998873 3222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
+..|++||+++++|+++++.|++++ ||+||+|+||+|+|+|.....
T Consensus 357 --------------------------~~~YaasKaal~~l~~~la~e~~~~----gI~vn~v~PG~v~T~~~~~~~~~~~ 406 (454)
T 3u0b_A 357 --------------------------QTNYATTKAGMIGLAEALAPVLADK----GITINAVAPGFIETKMTEAIPLATR 406 (454)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECSBCC----------C
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEEcCcccChhhhhcchhhH
Confidence 2789999999999999999999887 999999999999999976432
Q ss_pred -----------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+++.+.++||+.| .+||++.
T Consensus 407 ~~~~~~~~l~r~g~pedvA~~v~fL~s~~a~~itG~~i--~vdGG~~ 451 (454)
T 3u0b_A 407 EVGRRLNSLFQGGQPVDVAELIAYFASPASNAVTGNTI--RVCGQAM 451 (454)
T ss_dssp HHHHHSBTTSSCBCHHHHHHHHHHHHCGGGTTCCSCEE--EESSSBS
T ss_pred HHHHhhccccCCCCHHHHHHHHHHHhCCccCCCCCcEE--EECCccc
Confidence 158999999999999999999999999 6777763
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=221.56 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=149.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA 88 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999 899999999755444333332110
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcccc-ccchHHHHH
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLS-QITNLELKK 292 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~-~~~~~~~~~ 292 (484)
+. .....++++..+++|+.|++.+++++++.|++ .++||++||..+... +...
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~----- 163 (265)
T 1h5q_A 89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL----- 163 (265)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET-----
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccccc-----
Confidence 00 11245889999999999999999999998864 389999999877322 1100
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
....+...|++||++++.+++.++.|++++ ||+||+|+||+|.|++....
T Consensus 164 -------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~ 214 (265)
T 1h5q_A 164 -------------------------NGSLTQVFYNSSKAACSNLVKGLAAEWASA----GIRVNALSPGYVNTDQTAHMD 214 (265)
T ss_dssp -------------------------TEECSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCGGGGGSC
T ss_pred -------------------------cccccccccHHHHHHHHHHHHHHHHHHHhc----CcEEEEEecCccccccccccc
Confidence 000123789999999999999999999887 99999999999999986542
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~~ 263 (265)
T 1h5q_A 215 KKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEY--FIDGGQL 263 (265)
T ss_dssp HHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EECTTGG
T ss_pred hhHHHHHHhcCcccCCCCHHHHHHHHHhhccCchhcCcCcEE--EecCCEe
Confidence 1258999999999999999999999998 6777753
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=219.92 Aligned_cols=185 Identities=21% Similarity=0.210 Sum_probs=147.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH-----------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL----------------------------- 231 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l----------------------------- 231 (484)
..+|++|++|||||++|||+++|++|+++ |++|++++|+.++.++..+++
T Consensus 2 ~~~~~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 80 (264)
T 2pd6_A 2 QNRLRSALALVTGAGSGIGRAVSVRLAGE-GATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARC 80 (264)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHH
Confidence 34678999999999999999999999999 899999999876655433221
Q ss_pred -----Hh------c------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccc
Q psy8786 232 -----KD------R------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQ 284 (484)
Q Consensus 232 -----~~------~------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~ 284 (484)
.+ + +. .....++++..+++|+.|++.+++++.+.|++ .++||++||..+. ..+
T Consensus 81 ~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 160 (264)
T 2pd6_A 81 LLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNV 160 (264)
T ss_dssp HHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCT
T ss_pred HHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCC
Confidence 10 1 00 01245789999999999999999999999865 4799999998763 222
Q ss_pred cchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 285 ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
. ...|++||+|++++++.++.|++++ ||+||+|+||++.
T Consensus 161 ~-------------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~ 199 (264)
T 2pd6_A 161 G-------------------------------------QTNYAASKAGVIGLTQTAARELGRH----GIRCNSVLPGFIA 199 (264)
T ss_dssp T-------------------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC
T ss_pred C-------------------------------------ChhhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeeccc
Confidence 2 2789999999999999999999887 9999999999999
Q ss_pred CCCccCCC---------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 365 TNMSSFMG---------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 365 T~m~~~~~---------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
|++..... ..+|+|+|+.+.+++++.+.+++|+.+ .++|++..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~~~ 257 (264)
T 2pd6_A 200 TPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSV--EVTGGLFM 257 (264)
T ss_dssp SCC----------CTGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC--
T ss_pred ccchhhcCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCcccCCCCCEE--EECCCcee
Confidence 99854321 158999999999999998899999998 66777643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=225.84 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=139.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARR-GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999 899999999998887777666432
Q ss_pred ----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 ----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 ----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
+. ...+.++++..+++|+.|++.++++++|.|++ +++||++||.++. +.+.
T Consensus 107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 177 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAG--------- 177 (301)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCC---------
Confidence 10 12355889999999999999999999999865 4799999999884 3222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 178 ----------------------------~~~Y~asKaa~~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~~~~~~~~ 225 (301)
T 3tjr_A 178 ----------------------------LGTYGVAKYGVVGLAETLAREVKPN----GIGVSVLCPMVVETKLVSNSERI 225 (301)
T ss_dssp ----------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEECCSCCCSSHHHHHHHH
T ss_pred ----------------------------chHHHHHHHHHHHHHHHHHHHhccc----CcEEEEEECCccccccccccccc
Confidence 2789999999999999999999988 99999999999999986421
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhh
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~ 390 (484)
...+|+|+|+.++..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 226 RGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp C----------------------CCCHHHHHHHHHHHHHHT
T ss_pred cchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcC
Confidence 1258999999988776543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=218.79 Aligned_cols=183 Identities=17% Similarity=0.282 Sum_probs=149.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh----c----------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD----R---------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~----~---------------------- 234 (484)
++++++|+++||||++|||+++|++|+++ |++|++++|+.++.++..+++.. .
T Consensus 2 ~~~~~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (248)
T 2pnf_A 2 EIKLQGKVSLVTGSTRGIGRAIAEKLASA-GSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY 80 (248)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999 89999999998766655444322 0
Q ss_pred -------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+. .....++++..+++|+.|++.+++++++.|++ .++||++||..+. +.+.
T Consensus 81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------- 153 (248)
T 2pnf_A 81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVG------- 153 (248)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTT-------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCC-------
Confidence 10 11245789999999999999999999999864 3799999998763 2222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
...|++||++++++++.++.|+++. ||+||+|+||++.|++....
T Consensus 154 ------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----~i~v~~v~Pg~v~t~~~~~~~ 199 (248)
T 2pnf_A 154 ------------------------------QVNYSTTKAGLIGFTKSLAKELAPR----NVLVNAVAPGFIETDMTAVLS 199 (248)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCGGGGGSC
T ss_pred ------------------------------CchHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeceecCchhhhcc
Confidence 2789999999999999999999887 99999999999999986432
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.+++++.+.+++|+.+ .++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~ 247 (248)
T 2pnf_A 200 EEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVI--HVNGGM 247 (248)
T ss_dssp HHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC
T ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHHHhCchhhcCCCcEE--EeCCCc
Confidence 1258999999999999988899999988 556654
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=225.55 Aligned_cols=173 Identities=20% Similarity=0.176 Sum_probs=138.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--c--------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--R-------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--~-------------------------- 234 (484)
+|+ |++|||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 96 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEA-GWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFA 96 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 456 99999999999999999999999 89999999998887776665532 1
Q ss_pred ---------CCC-------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CC-EEEEEeCCCccc-cccchHHHHHHH
Q psy8786 235 ---------AST-------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HA-RVVNLSSSAGHL-SQITNLELKKRL 294 (484)
Q Consensus 235 ---------~~~-------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~g-rIV~iSS~ag~~-~~~~~~~~~~~~ 294 (484)
+.. ....++|+.++++|+.|++.++++++|.|++ .| +||++||..+.. .+.
T Consensus 97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~--------- 167 (272)
T 2nwq_A 97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPG--------- 167 (272)
T ss_dssp SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTT---------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCC---------
Confidence 111 1235889999999999999999999999965 37 999999988742 222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|++....
T Consensus 168 ----------------------------~~~Y~asKaa~~~l~~~la~el~~~----gIrvn~v~PG~v~T~~~~~~~~~ 215 (272)
T 2nwq_A 168 ----------------------------SHVYGGTKAFVEQFSLNLRCDLQGT----GVRVTNLEPGLCESEFSLVRFGG 215 (272)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHTTCTTS----CCEEEEEEECSBC----------
T ss_pred ----------------------------CchHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEEcCCCcCcchhccccc
Confidence 2789999999999999999998876 99999999999999985321
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+|+|+|+.++||+++ ..+++|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~pedvA~~v~~l~s~-~~~~~g~~i 254 (272)
T 2nwq_A 216 DQARYDKTYAGAHPIQPEDIAETIFWIMNQ-PAHLNINSL 254 (272)
T ss_dssp ----------CCCCBCHHHHHHHHHHHHTS-CTTEEEEEE
T ss_pred chHHHHHhhccCCCCCHHHHHHHHHHHhCC-CccCccceE
Confidence 136899999999999986 578899987
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=220.13 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=143.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----------------HHHHHHHHHh-----c-------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----------------GAEAVQVLKD-----R------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----------------~~~~~~~l~~-----~------- 234 (484)
|++|++|||||++|||+++|++|+++ |++|++++|++++ .+++.+++.+ .
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~ 79 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCV 79 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 36799999999999999999999999 8999999987532 2233333321 1
Q ss_pred -CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccc
Q psy8786 235 -AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
+. .....++++..+++|+.|++.++++++|.|+++++||++||.++.. .+.
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------------- 139 (236)
T 1ooe_A 80 AGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPS-------------------- 139 (236)
T ss_dssp CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT--------------------
T ss_pred CcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCC--------------------
Confidence 10 2334588999999999999999999999998789999999988742 222
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh--hhcCCCCeEEEEEeCCcccCCCccCC-------CCCCH
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD--CELGNQDKVINAVHPGYVATNMSSFM-------GNVNI 376 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela--~~~~~~gIrVNaV~PG~V~T~m~~~~-------~~~~p 376 (484)
...|++||+|+++|+++++.|++ ++ ||+||+|+||+|+|++.... ...+|
T Consensus 140 -----------------~~~Y~~sK~a~~~~~~~la~e~~~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 198 (236)
T 1ooe_A 140 -----------------MIGYGMAKAAVHHLTSSLAAKDSGLPD----NSAVLTIMPVTLDTPMNRKWMPNADHSSWTPL 198 (236)
T ss_dssp -----------------BHHHHHHHHHHHHHHHHHHSTTSSCCT----TCEEEEEEESCBCCHHHHHHSTTCCGGGCBCH
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHhcccCC----CeEEEEEecCcccCcchhhcCCCccccccCCH
Confidence 27899999999999999999987 65 99999999999999986431 12579
Q ss_pred HhHHHHHH-HHHhhhccccccccccccccce
Q psy8786 377 FDDSSTFN-AFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 377 eevA~~~~-~L~s~~a~~itG~~i~~~~~g~ 406 (484)
+|+|+.++ +++++.+.+++|+.+ .++|+
T Consensus 199 ~dvA~~i~~~l~s~~~~~~~G~~~--~v~gg 227 (236)
T 1ooe_A 199 SFISEHLLKWTTETSSRPSSGALL--KITTE 227 (236)
T ss_dssp HHHHHHHHHHHHCGGGCCCTTCEE--EEEEE
T ss_pred HHHHHHHHHHHcCCCcccccccEE--EEecC
Confidence 99999987 666999999999998 44544
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=219.48 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=149.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 30 ~~l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 30 FSLKGKVASVTGSSGGIGWAVAEAYAQA-GADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp GCCTTCEEEETTTTSSHHHHHHHHHHHH-TCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999 899999999876554433332110
Q ss_pred -------------CCC------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcccc--ccchHHHH
Q psy8786 235 -------------AST------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLS--QITNLELK 291 (484)
Q Consensus 235 -------------~~~------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~--~~~~~~~~ 291 (484)
... ....++++..+++|+.|++.+++.+++.|++ .++||++||..+... ..
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~------ 182 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQ------ 182 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---C------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCCC------
Confidence 111 3345789999999999999999999999864 489999999987432 11
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
+...|++||++++.++++++.|++++ | +||+|+||+|+|++....
T Consensus 183 ------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----~-~v~~v~Pg~v~t~~~~~~ 227 (279)
T 3ctm_A 183 ------------------------------LQAPYNTAKAACTHLAKSLAIEWAPF----A-RVNTISPGYIDTDITDFA 227 (279)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHTTTT----C-EEEEEEECSBSSTTTSSC
T ss_pred ------------------------------CcccHHHHHHHHHHHHHHHHHHhccc----C-CEEEEeccCCcccccccc
Confidence 12789999999999999999999876 8 999999999999986432
Q ss_pred ---------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ---------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ---------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 228 ~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i--~vdgG~~ 277 (279)
T 3ctm_A 228 SKDMKAKWWQLTPLGREGLTQELVGGYLYLASNASTFTTGSDV--VIDGGYT 277 (279)
T ss_dssp CHHHHHHHHHHSTTCSCBCGGGTHHHHHHHHSGGGTTCCSCEE--EESTTCC
T ss_pred ChHHHHHHHHhCCccCCcCHHHHHHHHHHHhCccccCccCCEE--EECCCee
Confidence 1268999999999999999999999998 6777764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=216.05 Aligned_cols=186 Identities=22% Similarity=0.274 Sum_probs=151.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.++.++..++++..
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEA-GARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 899999999977665544443210
Q ss_pred -----------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 -----------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++++..+++|+.|++.+++++.+.|++ .++||++||..+......
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 159 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRP-------- 159 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS--------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCC--------
Confidence 11 12245789999999999999999999998864 589999999877422110
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-CC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS-FM-- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~-~~-- 371 (484)
.+...|++||++++.+++.++.|++++ ||+||+|+||+|.|++.. ..
T Consensus 160 --------------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~----gi~v~~v~pg~v~t~~~~~~~~~ 209 (260)
T 3awd_A 160 --------------------------QQQAAYNASKAGVHQYIRSLAAEWAPH----GIRANAVAPTYIETTLTRFGMEK 209 (260)
T ss_dssp --------------------------SCCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCTTTHHHHTC
T ss_pred --------------------------CCccccHHHHHHHHHHHHHHHHHhhhc----CeEEEEEEeeeeccchhhcccCC
Confidence 112689999999999999999999887 999999999999999865 11
Q ss_pred --------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 --------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 --------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+.+++++.+.+++|+.+ .++|++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~~ 258 (260)
T 3awd_A 210 PELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIV--NVDAGFT 258 (260)
T ss_dssp HHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTT
T ss_pred hHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCchhccCCCcEE--EECCcee
Confidence 1268999999999999998899999988 5676653
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=216.61 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=151.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------------------------c-
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------------------------R- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------------------------~- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.+..++..+++.. .
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999 89999999987665544433311 0
Q ss_pred ----------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHH
Q psy8786 235 ----------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRL 294 (484)
Q Consensus 235 ----------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~ 294 (484)
+. .....++++..+++|+.+++.+++++++.|++ .++||++||..+......
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 162 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG-------- 162 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT--------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCC--------
Confidence 10 12234889999999999999999999999865 479999999887432110
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
+...|++||++++++++.++.|++++ ||+||+|+||+|.|++....
T Consensus 163 ---------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 211 (278)
T 2bgk_A 163 ---------------------------VSHVYTATKHAVLGLTTSLCTELGEY----GIRVNCVSPYIVASPLLTDVFGV 211 (278)
T ss_dssp ---------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCCSCCCCTTSSSC
T ss_pred ---------------------------CCcchHHHHHHHHHHHHHHHHHHhhc----CcEEEEEEeceecchhhhhhccc
Confidence 12689999999999999999999887 99999999999999986432
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+++++++.+.+++|+.+ .++|++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~~~ 264 (278)
T 2bgk_A 212 DSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNL--VIDGGYTR 264 (278)
T ss_dssp CHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred chhHHHHhhhcccccccccCCHHHHHHHHHHHcCcccccCCCCEE--EECCcccc
Confidence 1268999999999999998999999998 56776643
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=217.92 Aligned_cols=181 Identities=21% Similarity=0.226 Sum_probs=139.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|+++ +|+.+..++..+++...
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~-G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNM-GANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999 8999988 66666555444433210
Q ss_pred -----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHH
Q psy8786 235 -----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRL 294 (484)
Q Consensus 235 -----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~ 294 (484)
+. .....++++..+++|+.|++.+++++++.|++ .++||++||..+ .+.+.
T Consensus 81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~--------- 151 (247)
T 2hq1_A 81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAG--------- 151 (247)
T ss_dssp HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCC---------
Confidence 00 11234678899999999999999999999864 479999999876 33222
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
...|++||++++.+++.++.|++++ ||+||+|+||++.|++....
T Consensus 152 ----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~ 199 (247)
T 2hq1_A 152 ----------------------------QANYAASKAGLIGFTKSIAKEFAAK----GIYCNAVAPGIIKTDMTDVLPDK 199 (247)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHTSCHH
T ss_pred ----------------------------CcHhHHHHHHHHHHHHHHHHHHHHc----CcEEEEEEEEEEeccchhhcchH
Confidence 2789999999999999999999887 99999999999999875431
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.+++++.+.+++|+.+ .++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~ 245 (247)
T 2hq1_A 200 VKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVI--NIDGGL 245 (247)
T ss_dssp HHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC
T ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHcCcccccccCcEE--EeCCCc
Confidence 1268999999999999998899999988 556654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=215.39 Aligned_cols=185 Identities=19% Similarity=0.172 Sum_probs=149.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh-------------------c-------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD-------------------R------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~-------------------~------- 234 (484)
..++++|++|||||++|||+++|++|+++ |++|++++|+.++.++..+++.. .
T Consensus 2 ~~~~~~~~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 2 KLNFSGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLL 80 (244)
T ss_dssp -CCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence 45689999999999999999999999999 89999999998766554332110 0
Q ss_pred ----CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 ----AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ----~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
+. .....++++..+++|+.|++.+++++.+.|++ .++||++||..+.....
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 144 (244)
T 1cyd_A 81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP---------------- 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT----------------
T ss_pred EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC----------------
Confidence 00 11235789999999999999999999998854 47999999988743211
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
+...|++||++++.+++.++.+++.. ||+||+|+||++.|++....
T Consensus 145 --------------------~~~~Y~~sK~a~~~~~~~~a~~~~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~ 200 (244)
T 1cyd_A 145 --------------------NLITYSSTKGAMTMLTKAMAMELGPH----KIRVNSVNPTVVLTDMGKKVSADPEFARKL 200 (244)
T ss_dssp --------------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBTTHHHHHHTCCHHHHHHH
T ss_pred --------------------CcchhHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCcccCccccccccCHHHHHHH
Confidence 12789999999999999999999887 99999999999999874311
Q ss_pred -------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+++|+|+.+++++++.+.+++|+.+ .++|++.
T Consensus 201 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~~ 242 (244)
T 1cyd_A 201 KERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGI--LVDAGYL 242 (244)
T ss_dssp HHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEE--EESTTGG
T ss_pred HhcCCccCCCCHHHHHHHHHHHhCchhhcccCCEE--EECCCcc
Confidence 1268999999999999999999999988 5677653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=219.26 Aligned_cols=174 Identities=21% Similarity=0.273 Sum_probs=140.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
++||++|||||++|||+++|++|+++ |++|++++|+.++.++..+++...
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 899999999987766555544220
Q ss_pred ---------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 ---------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 ---------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
.......++|+..+++|+.|++.+++++++.|++ .++||++||..+.....
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------- 148 (267)
T 2gdz_A 84 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA--------------- 148 (267)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT---------------
T ss_pred cCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCC---------------
Confidence 1111123568899999999999999999999964 47999999998743211
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHH--HHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIY--QKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~L--A~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
+...|++||+|++++++++ +.|+++. |||||+|+||+|+|++....
T Consensus 149 ---------------------~~~~Y~~sK~a~~~~~~~~ala~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~ 203 (267)
T 2gdz_A 149 ---------------------QQPVYCASKHGIVGFTRSAALAANLMNS----GVRLNAICPGFVNTAILESIEKEENMG 203 (267)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHHHHTC----CEEEEEEEESCBSSHHHHGGGCHHHHG
T ss_pred ---------------------CCchHHHHHHHHHHHHHHHHHHHHhccC----CcEEEEEecCcCcchhhhccccccccc
Confidence 1278999999999999995 5788776 99999999999999974321
Q ss_pred ----------------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 ----------------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 ----------------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
...+|+|+|+.++||+++. +++|+.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~--~~~G~~~~ 246 (267)
T 2gdz_A 204 QYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD--ALNGAIMK 246 (267)
T ss_dssp GGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT--TCSSCEEE
T ss_pred hhhhHHHHHHHHhccccCCCHHHHHHHHHHHhcCc--CCCCcEEE
Confidence 1248999999999999875 48999883
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=216.13 Aligned_cols=167 Identities=22% Similarity=0.250 Sum_probs=121.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH---------HHh----c---------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV---------LKD----R--------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~---------l~~----~--------------- 234 (484)
+++||++|||||++|||+++|++|++ |++|++++|+.+++++..+. +.. .
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l 79 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR--DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTL 79 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEE
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEE
Confidence 57899999999999999999999987 78999999998776654320 000 0
Q ss_pred ----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 235 ----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 235 ----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
.......++++..+++|+.|++.++++++|.|++ +|+||++||.++......
T Consensus 80 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------------- 142 (245)
T 3e9n_A 80 VHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHPG----------------- 142 (245)
T ss_dssp EECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC---------------------------
T ss_pred EECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCCC-----------------
Confidence 0112245789999999999999999999999865 689999999988432211
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----------
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----------- 372 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----------- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|.|++.....
T Consensus 143 -------------------~~~Y~asK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~ 199 (245)
T 3e9n_A 143 -------------------NTIYAASKHALRGLADAFRKEEANN----GIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEI 199 (245)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCC----------------CCGG
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEecCCccCchhhhhhhhhhccccccc
Confidence 2789999999999999999999988 999999999999999876432
Q ss_pred CCCHHhHHHHHHHHHhhhc
Q psy8786 373 NVNIFDDSSTFNAFERVIS 391 (484)
Q Consensus 373 ~~~peevA~~~~~L~s~~a 391 (484)
..+|+|+|+.++|+++...
T Consensus 200 ~~~p~dvA~~i~~l~~~~~ 218 (245)
T 3e9n_A 200 YIEPKEIANAIRFVIDAGE 218 (245)
T ss_dssp GSCHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHHcCCC
Confidence 1689999999999996543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=211.68 Aligned_cols=174 Identities=21% Similarity=0.179 Sum_probs=135.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH-----------------------hc-------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK-----------------------DR------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~-----------------------~~------- 234 (484)
.+|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++. +.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 82 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAK-GYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSAL 82 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999999999999999999999 8999999998776554433221 00
Q ss_pred ----CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 ----AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ----~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+. .....++++..+++|+.|++.+++.+++.|++ .++||++||..+.....
T Consensus 83 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------------- 145 (234)
T 2ehd_A 83 VNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFK----------------- 145 (234)
T ss_dssp EECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCT-----------------
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCC-----------------
Confidence 10 11245889999999999999999999999975 37999999988743211
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----CCCHHh
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----NVNIFD 378 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----~~~pee 378 (484)
+...|++||++++++++.++.|++++ ||+||+|+||+|+|++..... ..+|+|
T Consensus 146 -------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~d 202 (234)
T 2ehd_A 146 -------------------GGAAYNASKFGLLGLAGAAMLDLREA----NVRVVNVLPGSVDTGFAGNTPGQAWKLKPED 202 (234)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEECC----------------CCHHH
T ss_pred -------------------CCchhhHHHHHHHHHHHHHHHHHhhc----CcEEEEEEeCCCcCCcccccccccCCCCHHH
Confidence 12789999999999999999999887 999999999999999865432 479999
Q ss_pred HHHHHHHHHhhhccccccccc
Q psy8786 379 DSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 379 vA~~~~~L~s~~a~~itG~~i 399 (484)
+|+.+++++++.+.+++|+.+
T Consensus 203 vA~~~~~l~~~~~~~~~g~~~ 223 (234)
T 2ehd_A 203 VAQAVLFALEMPGHAMVSEIE 223 (234)
T ss_dssp HHHHHHHHHHSCCSSCCCEEE
T ss_pred HHHHHHHHhCCCcccccceEE
Confidence 999999999999999999875
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=217.91 Aligned_cols=208 Identities=17% Similarity=0.174 Sum_probs=138.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH--------H--HHHHHHHhc----------CCCCcc-HHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG--------A--EAVQVLKDR----------ASTVPF-AIQAE 245 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~--------~--~~~~~l~~~----------~~~~~~-~~~~~ 245 (484)
|++|||||++|||+++|++|+++ |++|++++|+.+++ . +.++++.+. ...... .+.++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~ 80 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLG 80 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHH
Confidence 68999999999999999999999 89999999986421 1 112222111 111111 24589
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCC
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD 323 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
..+++|+.|++.++++++|.|++. ++||++||.++...+....+........ ........ .... ....+.
T Consensus 81 ~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~------~~~~~~ 152 (257)
T 1fjh_A 81 NVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAG-EEAKARAI-VEHA------GEQGGN 152 (257)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHT-CHHHHHHH-HHTC------CTTHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhccc-chhhhhhh-hhcc------cCCCCc
Confidence 999999999999999999999764 8999999998852211100000000000 00000000 0000 000012
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------------------CCCCHHhHHHHHHH
Q psy8786 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------------GNVNIFDDSSTFNA 385 (484)
Q Consensus 324 ~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------------~~~~peevA~~~~~ 385 (484)
..|++||+|++.+++.++.|++++ ||+||+|+||+|+|++.... ...+|+|+|+.++|
T Consensus 153 ~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~ 228 (257)
T 1fjh_A 153 LAYAGSKNALTVAVRKRAAAWGEA----GVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAF 228 (257)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHT----TCEEEEEEECC---------------------CCCSTTSCCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhc----CeEEEEEeeCCCCCccchhhccchhHHHHHHhcccccCCCCCHHHHHHHHHH
Confidence 689999999999999999999887 99999999999999986532 12689999999999
Q ss_pred HHhhhccccccccccccccceeec
Q psy8786 386 FERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 386 L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
++++.+.+++|+.+ .++|++..
T Consensus 229 l~~~~~~~~tG~~~--~vdgG~~~ 250 (257)
T 1fjh_A 229 LMSPAASYVHGAQI--VIDGGIDA 250 (257)
T ss_dssp HTSGGGTTCCSCEE--EESTTHHH
T ss_pred HhCchhcCCcCCEE--EECCCccc
Confidence 99999999999998 67777643
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=213.82 Aligned_cols=180 Identities=22% Similarity=0.262 Sum_probs=147.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH-Hh---c---------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL-KD---R--------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l-~~---~--------------------------- 234 (484)
+|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++ .. .
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLAR-GDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999 899999999987766555444 10 0
Q ss_pred --------C---------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 --------A---------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 --------~---------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+ ......++++..+++|+.|++.+++++++.|++ .++||++||..+.....
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 150 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFP---------- 150 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC----------
Confidence 1 011235789999999999999999999999865 48999999988742211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-C---
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-M--- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-~--- 371 (484)
+...|++||++++.+++.++.|++++ ||+||+|+||+|.|++... .
T Consensus 151 --------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~ 200 (250)
T 2cfc_A 151 --------------------------GRSAYTTSKGAVLQLTKSVAVDYAGS----GIRCNAVCPGMIETPMTQWRLDQP 200 (250)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSTTTHHHHTSH
T ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHHhccc----CeEEEEEEeCcCccCccccccCCH
Confidence 12789999999999999999999887 9999999999999998543 1
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+++++++.+.+++|+.+ .++|++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gG~~ 248 (250)
T 2cfc_A 201 ELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAAL--VMDGAYT 248 (250)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSTTCTTCCSCEE--EESTTGG
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhhcccCCEE--EECCcee
Confidence 1158999999999999999999999998 5677653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=214.18 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=149.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999 899999999987665554443210
Q ss_pred -----------CC-----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 -----------AS-----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------~~-----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
+. .....++++..+++|+.+++.++++++|.|++ .++||++||..+.....
T Consensus 86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------- 154 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI----------- 154 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT-----------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC-----------
Confidence 00 12346889999999999999999999999864 47999999987743211
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
+...|++||++++.+++.++.+++.. ||+||+|+||++.|++....
T Consensus 155 -------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~----~i~v~~v~Pg~v~t~~~~~~~~~~~ 205 (255)
T 1fmc_A 155 -------------------------NMTSYASSKAAASHLVRNMAFDLGEK----NIRVNGIAPGAILTDALKSVITPEI 205 (255)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBCSHHHHTTCCHHH
T ss_pred -------------------------CCcccHHHHHHHHHHHHHHHHHhhhc----CcEEEEEecccCcchhhhhccChHH
Confidence 12789999999999999999999877 99999999999999865321
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.+.+++++.+.+++|+.+ .++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~ 250 (255)
T 1fmc_A 206 EQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQIL--TVSGGG 250 (255)
T ss_dssp HHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTS
T ss_pred HHHHHhcCCcccCCCHHHHHHHHHHHhCCccccCCCcEE--EECCce
Confidence 1268999999999999998899999988 455554
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-25 Score=217.39 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=147.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
..+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 21 ~~~l~~k~vlITGasggiG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 21 PNSFQGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999999999 899999999987766555544210
Q ss_pred ------------CC---C----CccHHHHHHHHHhhhHHHHHHHHHHHHhhh-c--CCEEEEEeCCCccccccchHHHHH
Q psy8786 235 ------------AS---T----VPFAIQAEKTILTNYLGLVRTCVFLFPLLR-R--HARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 ------------~~---~----~~~~~~~~~~~~vN~~g~~~l~~allp~l~-~--~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
.. . ....++++..+++|+.|++.+++++++.|+ + .++||++||..+.....
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 172 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG------- 172 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT-------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCC-------
Confidence 00 1 234578999999999999999999999986 2 47999999987632211
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC-CccCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN-MSSFM 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~-m~~~~ 371 (484)
+...|++||+|++.+++.++.+++++ ||+||+|+||+|.|+ +....
T Consensus 173 -----------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~----gi~v~~v~Pg~v~t~~~~~~~ 219 (302)
T 1w6u_A 173 -----------------------------FVVPSASAKAGVEAMSKSLAAEWGKY----GMRFNVIQPGPIKTKGAFSRL 219 (302)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCC------C
T ss_pred -----------------------------CcchhHHHHHHHHHHHHHHHHHhhhc----CcEEEEEeeccCCCcchhhhc
Confidence 12789999999999999999999887 999999999999997 43221
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
...+|+|+|+.+++++++.+.+++|+.+ .++|++.
T Consensus 220 ~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~~ 271 (302)
T 1w6u_A 220 DPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVI--KFDGGEE 271 (302)
T ss_dssp CTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTHH
T ss_pred ccchhhHHHHHhcCCcCCCCCHHHHHHHHHHHcCCcccccCCCEE--EECCCee
Confidence 1158999999999999998999999988 5666653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=220.96 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=132.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||+||||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~-G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQ-GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999 899999999998887776665421
Q ss_pred -------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCccccccch
Q psy8786 235 -------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGHLSQITN 287 (484)
Q Consensus 235 -------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~~~~~~~ 287 (484)
+ ......++++..+++|+.|+++++++++|.|.+ .|+||++||.++......
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~- 161 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGS- 161 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSS-
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCC-
Confidence 0 011245889999999999999999999999853 689999999988432211
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...|++||+|+++|+++++.|+.++ ||+||+|+||+|+|++
T Consensus 162 -----------------------------------~~~Y~aSKaal~~~~~~la~e~~~~----gi~v~~v~PG~v~T~~ 202 (319)
T 3ioy_A 162 -----------------------------------PGIYNTTKFAVRGLSESLHYSLLKY----EIGVSVLCPGLVKSYI 202 (319)
T ss_dssp -----------------------------------SHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEECCCCBC---
T ss_pred -----------------------------------CHHHHHHHHHHHHHHHHHHHHhhhc----CCEEEEEEcCeEccCc
Confidence 2789999999999999999999987 9999999999999998
Q ss_pred ccCCC---------------------------CCCHHhHHHHHHHHHhh
Q psy8786 368 SSFMG---------------------------NVNIFDDSSTFNAFERV 389 (484)
Q Consensus 368 ~~~~~---------------------------~~~peevA~~~~~L~s~ 389 (484)
..... ..+|+++|+.++..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~ 251 (319)
T 3ioy_A 203 YASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKA 251 (319)
T ss_dssp --------------------------CCGGGSSBCHHHHHHHHHHHHHT
T ss_pred ccccccCchhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHc
Confidence 65321 05788898888776644
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=214.87 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=148.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~-------------------------- 234 (484)
.+++||++|||||++|||+++|++|+++ |++|++++|+ .+++++..+++...
T Consensus 3 ~~l~~k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 3 PDLKGKRVLITGSSQGIGLATARLFARA-GAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 8999999998 66655544443210
Q ss_pred ------------CC-C------CccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----C---CEEEEEeCCCccc-cccch
Q psy8786 235 ------------AS-T------VPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----H---ARVVNLSSSAGHL-SQITN 287 (484)
Q Consensus 235 ------------~~-~------~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~---grIV~iSS~ag~~-~~~~~ 287 (484)
+. . ....++++..+++|+.|++.++++++|.|++ . ++||++||..+.. ...
T Consensus 82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-- 159 (258)
T 3afn_B 82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGP-- 159 (258)
T ss_dssp HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCT--
T ss_pred HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCC--
Confidence 11 0 1234789999999999999999999998853 2 7999999987642 111
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
+...|++||++++.+++.++.|++++ ||+||+|+||++.|++
T Consensus 160 ----------------------------------~~~~Y~~sK~a~~~~~~~~~~e~~~~----gi~v~~v~Pg~v~t~~ 201 (258)
T 3afn_B 160 ----------------------------------GAGLYGAAKAFLHNVHKNWVDFHTKD----GVRFNIVSPGTVDTAF 201 (258)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBSSGG
T ss_pred ----------------------------------CchHHHHHHHHHHHHHHHHHHhhccc----CeEEEEEeCCCccccc
Confidence 12789999999999999999999887 9999999999999998
Q ss_pred ccCC---------------CCCCHHhHHHHHHHHHhhhcc-cccccccccccccee
Q psy8786 368 SSFM---------------GNVNIFDDSSTFNAFERVISH-FLIGQQINTFIPAIY 407 (484)
Q Consensus 368 ~~~~---------------~~~~peevA~~~~~L~s~~a~-~itG~~i~~~~~g~~ 407 (484)
.... ...+|+|+|+.+++++++.+. +++|+.+ .++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~--~v~gg~ 255 (258)
T 3afn_B 202 HADKTQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVL--DINGGQ 255 (258)
T ss_dssp GTTCCHHHHHHHHTTCTTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEE--EESTTS
T ss_pred ccccCHHHHHHHhccCCCCcCCCHHHHHHHHHHHhCcchhccccCCEE--eECCCc
Confidence 6532 126899999999999998877 9999988 566665
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=214.65 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=139.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCch--hHHHHHH--------------------------HHHh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKK--KGAEAVQ--------------------------VLKD 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~--~~~~~~~--------------------------~l~~ 233 (484)
+|+||++|||||++|||+++|++|+++ |++ |++++|+.+ ..++..+ ++.+
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~-G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999 785 999999752 2222111 1111
Q ss_pred c---------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 234 R---------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 234 ~---------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
. .......++++..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 81 ~~g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------- 146 (254)
T 1sby_A 81 QLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH-------------- 146 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT--------------
T ss_pred hcCCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCC--------------
Confidence 0 1111234678899999999999999999999854 47999999988743211
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
+...|++||+|+++++++++.++.++ ||+||+|+||+|+|++....
T Consensus 147 ----------------------~~~~Y~~sK~a~~~~~~~la~~~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 200 (254)
T 1sby_A 147 ----------------------QVPVYSASKAAVVSFTNSLAKLAPIT----GVTAYSINPGITRTPLVHTFNSWLDVEP 200 (254)
T ss_dssp ----------------------TSHHHHHHHHHHHHHHHHHHHHHHHH----SEEEEEEEECSEESHHHHSCCCGGGSCT
T ss_pred ----------------------CchHHHHHHHHHHHHHHHHHHHhccC----CeEEEEEecCCccCccccccchhhhhhH
Confidence 12789999999999999999999877 99999999999999985432
Q ss_pred ---------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ---------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
...+|+|+|+.++++++ .+.+|+.+ .++|++
T Consensus 201 ~~~~~~~~~~~~~~~dvA~~i~~~~~---~~~~G~~~--~v~gG~ 240 (254)
T 1sby_A 201 RVAELLLSHPTQTSEQCGQNFVKAIE---ANKNGAIW--KLDLGT 240 (254)
T ss_dssp THHHHHTTSCCEEHHHHHHHHHHHHH---HCCTTCEE--EEETTE
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH---cCCCCCEE--EEeCCc
Confidence 11479999999999885 57899988 567765
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=213.13 Aligned_cols=178 Identities=21% Similarity=0.271 Sum_probs=144.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEE-EecCchhHHHHHHHHHhc------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYL-TARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl-~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
||++|||||++|||+++|++|+++ |++|++ .+|+.++.++..++++..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~-G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKA-GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999 899988 588876665544443210
Q ss_pred --------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 --------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
+. .....++++..+++|+.|++.+++++.+.|++ .++||++||..+. +.+.
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 147 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIG------------ 147 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT------------
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCC------------
Confidence 10 11245789999999999999999999999864 4899999998763 2222
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
...|++||++++++++.++.|+++. ||+||+|+||+|.|++.....
T Consensus 148 -------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~ 198 (244)
T 1edo_A 148 -------------------------QANYAAAKAGVIGFSKTAAREGASR----NINVNVVCPGFIASDMTAKLGEDMEK 198 (244)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBCSHHHHTTCHHHHH
T ss_pred -------------------------CccchhhHHHHHHHHHHHHHHhhhc----CCEEEEEeeCccccchhhhcChHHHH
Confidence 2789999999999999999999877 999999999999999754321
Q ss_pred ----------CCCHHhHHHHHHHHH-hhhcccccccccccccccee
Q psy8786 373 ----------NVNIFDDSSTFNAFE-RVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 ----------~~~peevA~~~~~L~-s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.++|++ ++.+.+++|+.+ .++|++
T Consensus 199 ~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~--~v~gG~ 242 (244)
T 1edo_A 199 KILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAF--TIDGGI 242 (244)
T ss_dssp HHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEE--EESTTT
T ss_pred HHhhcCCCCCCCCHHHHHHHHHHHhCCCccCCcCCCEE--EeCCCc
Confidence 258999999999998 778889999988 566665
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-25 Score=210.72 Aligned_cols=173 Identities=20% Similarity=0.158 Sum_probs=144.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC-------eEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG-------YIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga-------~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
+|++|||||++|||+++|++|+++ |+ +|++++|+.+++++..+++...
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHh-cCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 689999999999999999999999 78 8999999987766655544321
Q ss_pred --------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHH
Q psy8786 235 --------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 235 --------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
+. .....++++..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------- 153 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR------- 153 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCC-------
Confidence 00 01245789999999999999999999999854 48999999988743211
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
+...|++||+++++++++++.|++++ ||+||+|+||+|.|++....
T Consensus 154 -----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~ 200 (244)
T 2bd0_A 154 -----------------------------HSSIYCMSKFGQRGLVETMRLYARKC----NVRITDVQPGAVYTPMWGKVD 200 (244)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCBCSTTTCCCC
T ss_pred -----------------------------CCchhHHHHHHHHHHHHHHHHHhhcc----CcEEEEEECCCccchhhhhcc
Confidence 12789999999999999999999876 99999999999999987643
Q ss_pred -----CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 -----GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 -----~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
...+|+|+|+.+++++++...+++|+.+
T Consensus 201 ~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~ 233 (244)
T 2bd0_A 201 DEMQALMMMPEDIAAPVVQAYLQPSRTVVEEII 233 (244)
T ss_dssp STTGGGSBCHHHHHHHHHHHHTSCTTEEEEEEE
T ss_pred ccccccCCCHHHHHHHHHHHHhCCccccchheE
Confidence 2368999999999999999999999987
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=214.94 Aligned_cols=183 Identities=23% Similarity=0.180 Sum_probs=148.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-CchhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~~~~~~~~l~~~-------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++| +.+..++..+++...
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 899999999 666555544444211
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
+. .....++++..+++|+.|++.+++++++.|+++++||++||..+. ....
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 165 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIP---------- 165 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCC----------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCCC----------
Confidence 00 123457889999999999999999999998766899999998775 2211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc------
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS------ 369 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~------ 369 (484)
+...|++||++++.+++.++.|++.. ||+||+|+||++.|++..
T Consensus 166 --------------------------~~~~Y~~sK~a~~~~~~~~~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~ 215 (274)
T 1ja9_A 166 --------------------------NHALYAGSKAAVEGFCRAFAVDCGAK----GVTVNCIAPGGVKTDMFDENSWHY 215 (274)
T ss_dssp --------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBSSHHHHHHGGGT
T ss_pred --------------------------CCchHHHHHHHHHHHHHHHHHHhhhc----CeEEEEEeeCcccccchhcccccc
Confidence 12789999999999999999999887 999999999999998754
Q ss_pred ------CCC----------------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 370 ------FMG----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 370 ------~~~----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
... ..+|+|+|+.+.+++++.+.+++|+.+ .++|++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~--~v~gG~ 273 (274)
T 1ja9_A 216 APGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVI--KLTGGG 273 (274)
T ss_dssp STTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC
T ss_pred cccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccccccCcEE--EecCCc
Confidence 111 258999999999999988899999988 556654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=213.91 Aligned_cols=215 Identities=34% Similarity=0.511 Sum_probs=149.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHh-cCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCE-QFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~-~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
++|++|||||++|||+++|++|++ + |++|++++|+.++.++..+++...
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhc-CCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999 8 899999999977666555544321
Q ss_pred ---------CC-----CC-ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcccc-ccchHHHHHHHhhc-
Q psy8786 235 ---------AS-----TV-PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLS-QITNLELKKRLRQL- 297 (484)
Q Consensus 235 ---------~~-----~~-~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~-~~~~~~~~~~~~~~- 297 (484)
+. .. ...++++..+++|+.|++.+++++++.|++.++||++||..+... ..............
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~ 161 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 161 (276)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccccc
Confidence 00 01 115789999999999999999999999987789999999877421 11000000000000
Q ss_pred cccccc---cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCC
Q psy8786 298 REPVSL---RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNV 374 (484)
Q Consensus 298 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~ 374 (484)
...... ................+++...|++||++++.+++.++++++++....||+||+|+||+|.|++.......
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~~~~~ 241 (276)
T 1wma_A 162 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATK 241 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTTCSB
T ss_pred cchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCccccC
Confidence 000000 00000000000001123344789999999999999999999872111289999999999999998766668
Q ss_pred CHHhHHHHHHHHHhhh--cccccccccc
Q psy8786 375 NIFDDSSTFNAFERVI--SHFLIGQQIN 400 (484)
Q Consensus 375 ~peevA~~~~~L~s~~--a~~itG~~i~ 400 (484)
+|+|+|+.++|+++.. +.+++|+.+.
T Consensus 242 ~~~~~a~~~~~l~~~~~~~~~~~G~~~~ 269 (276)
T 1wma_A 242 SPEEGAETPVYLALLPPDAEGPHGQFVS 269 (276)
T ss_dssp CHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred ChhHhhhhHhhhhcCcccccccCceEec
Confidence 9999999999999744 4689999773
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=215.56 Aligned_cols=203 Identities=31% Similarity=0.395 Sum_probs=140.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.+++|+||||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSN-GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999999999 899999999988777766665431
Q ss_pred ------------CCC------------------------------------CccHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy8786 235 ------------AST------------------------------------VPFAIQAEKTILTNYLGLVRTCVFLFPLL 266 (484)
Q Consensus 235 ------------~~~------------------------------------~~~~~~~~~~~~vN~~g~~~l~~allp~l 266 (484)
+.. ....++++.++++|+.|++.++++++|.|
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 111 11346788899999999999999999999
Q ss_pred hc--CCEEEEEeCCCccccccchHHHHHHHhhcccccc-----ccccccccCCCcccccCCC--CChhhHHhHHHHHHHH
Q psy8786 267 RR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS-----LRSLNITKEHPRAHVAKGW--PDSAYAVSKIGVNLLT 337 (484)
Q Consensus 267 ~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~Y~aSKaAl~~lt 337 (484)
++ .++||++||.++...........+.......... .................+| +...|++||+|+++|+
T Consensus 168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~ 247 (311)
T 3o26_A 168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT 247 (311)
T ss_dssp TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHH
Confidence 75 4899999999884332111111111100000000 0000000000000011122 2378999999999999
Q ss_pred HHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCCCHHhHHHHHHHHHhhhcc
Q psy8786 338 RIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISH 392 (484)
Q Consensus 338 ~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~peevA~~~~~L~s~~a~ 392 (484)
+.+++++. +|+||+|+||+|+|+|.......+++++++.+++++.....
T Consensus 248 ~~la~e~~------~i~v~~v~PG~v~T~~~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (311)
T 3o26_A 248 RVLANKIP------KFQVNCVCPGLVKTEMNYGIGNYTAEEGAEHVVRIALFPDD 296 (311)
T ss_dssp HHHHHHCT------TSEEEEECCCSBCSGGGTTCCSBCHHHHHHHHHHHHTCCSS
T ss_pred HHHHhhcC------CceEEEecCCceecCCcCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 99999873 59999999999999999888888999999999988754333
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=214.29 Aligned_cols=183 Identities=20% Similarity=0.228 Sum_probs=148.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh--------c-------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD--------R------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~--------~------------------- 234 (484)
.+|+||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++.. .
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 92 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 92 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence 4578999999999999999999999999 89999999998776665555432 0
Q ss_pred ----------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhh-hc-CCEEEEEeCCCccccccchHHH
Q psy8786 235 ----------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLL-RR-HARVVNLSSSAGHLSQITNLEL 290 (484)
Q Consensus 235 ----------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l-~~-~grIV~iSS~ag~~~~~~~~~~ 290 (484)
+. .....++++..+++|+.|++.+++++++.+ ++ +++||++||.+....+.
T Consensus 93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----- 167 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPL----- 167 (303)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCCTT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecccCCCc-----
Confidence 10 112457899999999999999999999954 33 58999999987222111
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC--c
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM--S 368 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m--~ 368 (484)
...|++||+++.++++.++.|++++ ||+||+|+||+|.|++ .
T Consensus 168 --------------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~ 211 (303)
T 1yxm_A 168 --------------------------------AVHSGAARAGVYNLTKSLALEWACS----GIRINCVAPGVIYSQTAVE 211 (303)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEECSBCCTGGGT
T ss_pred --------------------------------chhhHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCCcccchhhh
Confidence 2789999999999999999999887 9999999999999994 2
Q ss_pred cCC-----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 369 SFM-----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 369 ~~~-----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
... ...+|+|+|+.++||+++.+.+++|+.+ .++|++.
T Consensus 212 ~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~--~v~gG~~ 266 (303)
T 1yxm_A 212 NYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSV--DVDGGRS 266 (303)
T ss_dssp TSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEE--EESTTGG
T ss_pred hccccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccCCCcEE--EECCCee
Confidence 110 1268999999999999999999999998 6777764
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=214.76 Aligned_cols=167 Identities=23% Similarity=0.211 Sum_probs=134.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAA-GDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 357899999999999999999999999 899999999877665544332111
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~ 299 (484)
.......++++..+++|+.|++.++++++|.|++ .++||++||..+.....
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------- 146 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFA-------------- 146 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT--------------
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCC--------------
Confidence 1123456899999999999999999999999965 48999999988743211
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------- 372 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------- 372 (484)
+...|++||+|+++++++++.|++++ ||+||+|+||+|+|++.....
T Consensus 147 ----------------------~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 200 (281)
T 3m1a_A 147 ----------------------GFSAYSATKAALEQLSEGLADEVAPF----GIKVLIVEPGAFRTNLFGKGAAYFSEEN 200 (281)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCTTTCCCCEEECCBC
T ss_pred ----------------------CchHHHHHHHHHHHHHHHHHHHhhcc----CcEEEEEecCccccccccccccccCCcc
Confidence 12789999999999999999999987 999999999999999854311
Q ss_pred ---------------------CCCHHhHHHHHHHHHhhh
Q psy8786 373 ---------------------NVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 373 ---------------------~~~peevA~~~~~L~s~~ 390 (484)
..+|+|+|++++++++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~ 239 (281)
T 3m1a_A 201 PAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTE 239 (281)
T ss_dssp TTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHSS
T ss_pred hhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCC
Confidence 157888888888887543
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=225.20 Aligned_cols=172 Identities=17% Similarity=-0.012 Sum_probs=134.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHh-cCCCeEEEEecCchhHH------------HHHHHHHhc-----------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCE-QFDGYIYLTARDKKKGA------------EAVQVLKDR----------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~-~gga~Vvl~~R~~~~~~------------~~~~~l~~~----------------- 234 (484)
.||+||||||++|||+++|+.|++ + |++|++++|+.+..+ .+.++++..
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~-GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGF-GADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 589999999999999999999999 9 899999998754321 111122110
Q ss_pred ----------------------CC----------------------------------------CCccHHHHHHHHHhhh
Q psy8786 235 ----------------------AS----------------------------------------TVPFAIQAEKTILTNY 252 (484)
Q Consensus 235 ----------------------~~----------------------------------------~~~~~~~~~~~~~vN~ 252 (484)
+. ...+.++|+.++++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 11 0135689999999999
Q ss_pred HHHH-HHHHHHHH-hh-hcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHH
Q psy8786 253 LGLV-RTCVFLFP-LL-RRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAV 328 (484)
Q Consensus 253 ~g~~-~l~~allp-~l-~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~a 328 (484)
.+.| .+++++.+ .| +++|+|||+||.++. ..+.. ...+|++
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~~-----------------------------------~~~aY~A 263 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIY-----------------------------------WHGALGK 263 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHHH-----------------------------------TSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCCc-----------------------------------cchHHHH
Confidence 9987 78888765 34 346899999999884 32221 1168999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---------------CCCHHhHHHHHHHHHhhhccc
Q psy8786 329 SKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---------------NVNIFDDSSTFNAFERVISHF 393 (484)
Q Consensus 329 SKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---------------~~~peevA~~~~~L~s~~a~~ 393 (484)
||+|+.+|+|+||.||+++ |||||+|+||+|.|++....+ .++|||+++.+.||+|+.- |
T Consensus 264 SKaAl~~lTrsLA~Ela~~----GIRVNaVaPG~i~T~~~~~ip~~~~~~~~~~~~m~r~G~pEdva~~v~~L~sd~l-y 338 (422)
T 3s8m_A 264 AKVDLDRTAQRLNARLAKH----GGGANVAVLKSVVTQASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRERL-Y 338 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCTTGGGSTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHHHhCcc----CEEEEEEEcCCCcChhhhcCCCChHHHHHHHhhhcCCcChHHHHHHHHHHhcchh-h
Confidence 9999999999999999988 999999999999999987652 2889999999999998854 6
Q ss_pred cc-cc
Q psy8786 394 LI-GQ 397 (484)
Q Consensus 394 it-G~ 397 (484)
.+ |+
T Consensus 339 ~~~~~ 343 (422)
T 3s8m_A 339 RQDGQ 343 (422)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 55 44
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=208.12 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=144.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHhc------------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
+|++|||||++|||+++|++|+++ |++|+++ +|+.++.++..+++...
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~-G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAED-GFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999 8999887 88877665544433210
Q ss_pred ---------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 ---------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
+. .....++++..+++|+.|++.+++++++.|++ .++||++||..+. +.+.
T Consensus 80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 148 (245)
T 2ph3_A 80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPG----------- 148 (245)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSS-----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCC-----------
Confidence 10 11245789999999999999999999999865 3799999998763 2222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG---- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~---- 372 (484)
...|++||++++++++.++.|++++ ||+||+|+||++.|++.....
T Consensus 149 --------------------------~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~ 198 (245)
T 2ph3_A 149 --------------------------QANYVASKAGLIGFTRAVAKEYAQR----GITVNAVAPGFIETEMTERLPQEVK 198 (245)
T ss_dssp --------------------------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHTSCHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHHHHHHHHHHc----CeEEEEEEEEeecCcchhhcCHHHH
Confidence 2789999999999999999999887 999999999999999754321
Q ss_pred -----------CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 -----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 -----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|+|+|+.+.+++++.+.+++|+.+ .++|++
T Consensus 199 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~--~v~gg~ 242 (245)
T 2ph3_A 199 EAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTL--CVDGGL 242 (245)
T ss_dssp HHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTC
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEE--EECCCC
Confidence 258999999999999988889999988 566654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=202.70 Aligned_cols=187 Identities=25% Similarity=0.339 Sum_probs=135.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCchhHH------------------------HHHHHHHh----
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKKKGA------------------------EAVQVLKD---- 233 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~~~~------------------------~~~~~l~~---- 233 (484)
|++|++|||||++|||+++|++|+++ | ++|++++|+.++.+ ++.+++.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~-g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKD-KNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhc-CCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 36799999999999999999999999 7 89999999865322 22222211
Q ss_pred -c--------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------------CCEEEEEeCCCccccc
Q psy8786 234 -R--------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-------------HARVVNLSSSAGHLSQ 284 (484)
Q Consensus 234 -~--------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-------------~grIV~iSS~ag~~~~ 284 (484)
. +. .....++++..+++|+.+++.+++++++.|++ .++||++||..+....
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 159 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC
Confidence 1 11 12245889999999999999999999998853 5899999998874321
Q ss_pred cchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 285 ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
... .....+...|++||++++++++.++.+++++ ||+||+|+||+|+
T Consensus 160 ~~~-----------------------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~Pg~v~ 206 (250)
T 1yo6_A 160 NTS-----------------------------GSAQFPVLAYRMSKAAINMFGRTLAVDLKDD----NVLVVNFCPGWVQ 206 (250)
T ss_dssp CCS-----------------------------TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGG----TCEEEEEECCCC-
T ss_pred ccc-----------------------------ccccCCccHHHHHHHHHHHHHHHHHHHhccC----CeEEEEEcCCcee
Confidence 100 0000123789999999999999999999887 9999999999999
Q ss_pred CCCccCCCCCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 365 TNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 365 T~m~~~~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
|++.......+|+|+|+.++++++....+++|+.+ .++|+
T Consensus 207 t~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~G~~~--~~~g~ 246 (250)
T 1yo6_A 207 TNLGGKNAALTVEQSTAELISSFNKLDNSHNGRFF--MRNLK 246 (250)
T ss_dssp ------------HHHHHHHHHHHTTCCGGGTTCEE--ETTEE
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcccccCCCeEE--EECCc
Confidence 99987666789999999999999988888999987 44544
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-24 Score=208.09 Aligned_cols=177 Identities=20% Similarity=0.205 Sum_probs=142.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
++++|++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999 899999999977666554443210
Q ss_pred ------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC----CEEEEEeCCCcccc-ccchHHHH
Q psy8786 235 ------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH----ARVVNLSSSAGHLS-QITNLELK 291 (484)
Q Consensus 235 ------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~----grIV~iSS~ag~~~-~~~~~~~~ 291 (484)
+ ......++|+..+++|+.+++.+++.+++.|++. ++||++||..+... +..
T Consensus 108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~----- 182 (279)
T 1xg5_A 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLS----- 182 (279)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCG-----
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCC-----
Confidence 1 1122458899999999999999999999999652 79999999887421 111
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh--hhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD--CELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela--~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
+...|++||++++.|++.++.|++ .. ||+||+|+||+|.|++..
T Consensus 183 ------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~~----~i~v~~v~Pg~v~t~~~~ 228 (279)
T 1xg5_A 183 ------------------------------VTHFYSATKYAVTALTEGLRQELREAQT----HIRATCISPGVVETQFAF 228 (279)
T ss_dssp ------------------------------GGHHHHHHHHHHHHHHHHHHHHHHHTTC----CCEEEEEEESCBCSSHHH
T ss_pred ------------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCC----CeEEEEEecCcccchhhh
Confidence 126899999999999999999997 54 899999999999999832
Q ss_pred C---------------CCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 370 F---------------MGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 370 ~---------------~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ....+|+|+|+.+++++++...+.+|+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~l~~~~~~~~~g~i~ 273 (279)
T 1xg5_A 229 KLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGDIQ 273 (279)
T ss_dssp HHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHSCTTEEEEEEE
T ss_pred hhcccChhHHhhhcccccCCCHHHHHHHHHHHhcCCcceEeeeEE
Confidence 1 12368999999999999988888777643
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-24 Score=206.02 Aligned_cols=180 Identities=22% Similarity=0.291 Sum_probs=143.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCC---CeEEEEecCchhHHH--------------------------HHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFD---GYIYLTARDKKKGAE--------------------------AVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gg---a~Vvl~~R~~~~~~~--------------------------~~~~l~ 232 (484)
.++++|++|||||++|||+++|++|+++ | ++|++++|+.++.++ +.+++.
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~-G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 95 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNL-PQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIE 95 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTS-SSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhc-CCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHH
Confidence 4578899999999999999999999999 7 899999998653222 122111
Q ss_pred h-----c--------CC-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------------CCEEEEEeCCC
Q psy8786 233 D-----R--------AS-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-------------HARVVNLSSSA 279 (484)
Q Consensus 233 ~-----~--------~~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-------------~grIV~iSS~a 279 (484)
+ . +. .....++++..+++|+.+++.+++++++.|++ .++||++||..
T Consensus 96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 175 (267)
T 1sny_A 96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 175 (267)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence 1 1 10 11235889999999999999999999999864 48999999988
Q ss_pred ccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEe
Q psy8786 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH 359 (484)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~ 359 (484)
+...... ..+...|++||+++++|++.++.|++++ ||+||+|+
T Consensus 176 ~~~~~~~---------------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~----gi~v~~v~ 218 (267)
T 1sny_A 176 GSIQGNT---------------------------------DGGMYAYRTSKSALNAATKSLSVDLYPQ----RIMCVSLH 218 (267)
T ss_dssp GCSTTCC---------------------------------SCCCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEC
T ss_pred ccccCCC---------------------------------CCCchHHHHHHHHHHHHHHHHHHHhhcC----CcEEEEeC
Confidence 7432110 0012689999999999999999999887 99999999
Q ss_pred CCcccCCCccCCCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 360 PGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 360 PG~V~T~m~~~~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
||+|+|+|.......+|+++|+.++++++.....++|+.+
T Consensus 219 Pg~v~t~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~G~~~ 258 (267)
T 1sny_A 219 PGWVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFV 258 (267)
T ss_dssp CCSBCSTTTCTTCSBCHHHHHHHHHHHHHHCCGGGTTCEE
T ss_pred CcceecCCCCCCCCCCHHHHHHHHHHHHHhcCcCCCCcEE
Confidence 9999999987767789999999999999888888999977
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=203.38 Aligned_cols=179 Identities=21% Similarity=0.155 Sum_probs=142.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---------------hHHHHHHHHHhc----------CC--C-
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---------------KGAEAVQVLKDR----------AS--T- 237 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---------------~~~~~~~~l~~~----------~~--~- 237 (484)
+|++|||||++|||+++|++|+++ |++|++++|+.+ ..+++.+++... +. .
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~ 80 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAE 80 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCCCCC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccccCcc
Confidence 589999999999999999999999 899999988642 334444444111 00 0
Q ss_pred ---C----ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCC--------EEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 238 ---V----PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHA--------RVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 238 ---~----~~~~~~~~~~~vN~~g~~~l~~allp~l~~~g--------rIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
. ...++++..+++|+.+++.+++++.+.|++.+ +||++||..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------------- 143 (242)
T 1uay_A 81 KILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI----------------- 143 (242)
T ss_dssp CSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT-----------------
T ss_pred cccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC-----------------
Confidence 0 12348999999999999999999999987633 999999987742211
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----------- 371 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----------- 371 (484)
+...|++||++++.+++.++.|++++ ||+||+|+||+|.|++....
T Consensus 144 -------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~----gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 200 (242)
T 1uay_A 144 -------------------GQAAYAASKGGVVALTLPAARELAGW----GIRVVTVAPGLFDTPLLQGLPEKAKASLAAQ 200 (242)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSCSSHHHHTSCHHHHHHHHTT
T ss_pred -------------------CCchhhHHHHHHHHHHHHHHHHHhhc----CcEEEEEEeccCcchhhhccchhHHHHHHhh
Confidence 12789999999999999999999887 99999999999999875421
Q ss_pred -----CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -----GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -----~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
...+|+|+|+.+++++++ .+++|+.+ .++|++..
T Consensus 201 ~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~~--~v~gG~~~ 239 (242)
T 1uay_A 201 VPFPPRLGRPEEYAALVLHILEN--PMLNGEVV--RLDGALRM 239 (242)
T ss_dssp CCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEE--EESTTCCC
T ss_pred CCCcccCCCHHHHHHHHHHHhcC--CCCCCcEE--EEcCCeec
Confidence 125899999999999977 78999998 67777754
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=218.06 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=132.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH---HHHHHHHH------hc---------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG---AEAVQVLK------DR--------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~---~~~~~~l~------~~--------------------- 234 (484)
+||+||||||++|||+++|++|+++ |++|++++|+.++. .+..+.+. ..
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~-G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASD-PSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTC-TTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 3689999999999999999999999 88888877654322 22222111 00
Q ss_pred ------------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccc-cccchHHHHHH
Q psy8786 235 ------------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHL-SQITNLELKKR 293 (484)
Q Consensus 235 ------------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~-~~~~~~~~~~~ 293 (484)
+. .....++|+.++++|+.|++.++++++|+|++ .++||++||.++.. .+.
T Consensus 80 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~-------- 151 (327)
T 1jtv_A 80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF-------- 151 (327)
T ss_dssp TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTT--------
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCC--------
Confidence 00 01245789999999999999999999999964 48999999998743 222
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
...|++||+|+++|+++++.|++++ ||+||+|+||+|+|+|.....
T Consensus 152 -----------------------------~~~Y~aSK~a~~~~~~~la~el~~~----gI~v~~v~PG~v~T~~~~~~~~ 198 (327)
T 1jtv_A 152 -----------------------------NDVYCASKFALEGLCESLAVLLLPF----GVHLSLIECGPVHTAFMEKVLG 198 (327)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCC-------C
T ss_pred -----------------------------ChHHHHHHHHHHHHHHHHHHHhhhc----CcEEEEEEeCcccChHHhhhhh
Confidence 2789999999999999999999987 999999999999999865321
Q ss_pred -------------------------------CCCHHhHHHHHHHHHhh---hcccccccccc
Q psy8786 373 -------------------------------NVNIFDDSSTFNAFERV---ISHFLIGQQIN 400 (484)
Q Consensus 373 -------------------------------~~~peevA~~~~~L~s~---~a~~itG~~i~ 400 (484)
..+|+|+|+.++++++. ..+|++|+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~l~~~~~~~~~~~tg~~~~ 260 (327)
T 1jtv_A 199 SPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFL 260 (327)
T ss_dssp CHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESCSTTH
T ss_pred cchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHcCCCCCeEEEeCchHH
Confidence 14899999999999874 46788998763
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=203.88 Aligned_cols=171 Identities=18% Similarity=0.151 Sum_probs=136.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+++++|++|||||++|||+++|++|+++ |++|++++|+.++.++..++++..
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 105 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999 899999999987766655544321
Q ss_pred -----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHh
Q psy8786 235 -----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLR 295 (484)
Q Consensus 235 -----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~ 295 (484)
+. .....++++..+++|+.|++.+++++++.|++ .++||++||..+......
T Consensus 106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 176 (272)
T 1yb1_A 106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF--------- 176 (272)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH---------
T ss_pred CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCC---------
Confidence 00 11234788999999999999999999999865 379999999988432211
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
...|++||+|++++++.++.|++.. ++.||+||+|+||+|+|++....
T Consensus 177 ---------------------------~~~Y~~sK~a~~~l~~~la~e~~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 228 (272)
T 1yb1_A 177 ---------------------------LLAYCSSKFAAVGFHKTLTDELAAL-QITGVKTTCLCPNFVNTGFIKNPSTSL 228 (272)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHT-TCTTEEEEEEEETHHHHCSTTCTHHHH
T ss_pred ---------------------------chhHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCcccCCccccccccc
Confidence 1689999999999999999999731 12389999999999999986531
Q ss_pred -CCCCHHhHHHHHHHHHhhh
Q psy8786 372 -GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 372 -~~~~peevA~~~~~L~s~~ 390 (484)
...+|+|+|+.+++++...
T Consensus 229 ~~~~~~~dva~~i~~~~~~~ 248 (272)
T 1yb1_A 229 GPTLEPEEVVNRLMHGILTE 248 (272)
T ss_dssp CCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHcC
Confidence 3478999999999888554
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=213.79 Aligned_cols=174 Identities=10% Similarity=-0.039 Sum_probs=135.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHh-cCCCeEEEEecCchhHH------------HHHHHHHhc----------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCE-QFDGYIYLTARDKKKGA------------EAVQVLKDR---------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~-~gga~Vvl~~R~~~~~~------------~~~~~l~~~---------------- 234 (484)
-.||++|||||++|||+++|+.|++ + |++|++++|+.+..+ ...+++...
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~-GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGC-GADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhc-CCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 4689999999999999999999999 9 899999988754321 112122211
Q ss_pred ----------------------CC----------------------------------------CCccHHHHHHHHHhhh
Q psy8786 235 ----------------------AS----------------------------------------TVPFAIQAEKTILTNY 252 (484)
Q Consensus 235 ----------------------~~----------------------------------------~~~~~~~~~~~~~vN~ 252 (484)
+. ...+.++|+.++++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 11 1125689999999999
Q ss_pred HHHH-HHHHHHHH-hh-hcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHH
Q psy8786 253 LGLV-RTCVFLFP-LL-RRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAV 328 (484)
Q Consensus 253 ~g~~-~l~~allp-~l-~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~a 328 (484)
.+.| .+++++.+ .| +++|+|||+||+++. ..+.. ....|++
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~-----------------------------------~~~aY~A 248 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIY-----------------------------------WNGSIGA 248 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTT-----------------------------------TTSHHHH
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCc-----------------------------------cchHHHH
Confidence 9998 77887764 44 346899999999884 32221 1168999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC---------------CCHHhHHHHHHHHHhhhccc
Q psy8786 329 SKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN---------------VNIFDDSSTFNAFERVISHF 393 (484)
Q Consensus 329 SKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~---------------~~peevA~~~~~L~s~~a~~ 393 (484)
||+|+++++|+||.||+++ .|||||+|+||+|.|++...... ++||++++.+.||+|+ +
T Consensus 249 aKaal~~ltrsLA~Ela~~---~GIRVNaVaPG~i~T~~s~~ip~~p~y~~~l~~~mkr~G~~Ed~a~~i~~L~sd---~ 322 (405)
T 3zu3_A 249 AKKDLDQKVLAIRESLAAH---GGGDARVSVLKAVVSQASSAIPMMPLYLSLLFKVMKEKGTHEGCIEQVYSLYKD---S 322 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTT---TSCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHHHhCcc---cCeEEEEEEeCCCcCchhhcCCCCcHHHHHHHHHHhcCCCcHHHHHHHHHHHhc---c
Confidence 9999999999999998763 18999999999999998776542 8999999999999987 7
Q ss_pred cccccc
Q psy8786 394 LIGQQI 399 (484)
Q Consensus 394 itG~~i 399 (484)
++|+.+
T Consensus 323 l~~~~~ 328 (405)
T 3zu3_A 323 LCGDSP 328 (405)
T ss_dssp TSSSCC
T ss_pred ccCCCC
Confidence 778755
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=211.76 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=111.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-----chhHHHHHHHHHhc-----------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-----KKKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-----~~~~~~~~~~l~~~----------------------- 234 (484)
+|++|++|||||++|||+++|++|+++ |++|++++|+ .+++++..+.+...
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~-G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGA-GHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 467899999999999999999999999 8999988776 23333333222110
Q ss_pred ---------------C------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHH
Q psy8786 235 ---------------A------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 ---------------~------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
+ ....+.++++.++++|+.|++.++++++|.|++ .|+||++||.++......
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~----- 155 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPP----- 155 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCS-----
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCC-----
Confidence 1 112245899999999999999999999999964 489999999887522111
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
....|++||+|+++++++++.|++++ ||+||+|+||+|.|++.
T Consensus 156 ------------------------------~~~~Y~asKaa~~~~~~~la~el~~~----gI~v~~v~PG~v~t~~~ 198 (324)
T 3u9l_A 156 ------------------------------YLAPYFAAKAAMDAIAVQYARELSRW----GIETSIIVPGAFTSGTN 198 (324)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECCC-----
T ss_pred ------------------------------cchhHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEECCccccCch
Confidence 12789999999999999999999887 99999999999998764
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=200.66 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=133.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+++||++|||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999 899999999987766554443210
Q ss_pred ---------C-C-------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ---------A-S-------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ---------~-~-------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
. . .....++++..+++|+.|++.++++++|.|++ .++||++||.++.....
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 172 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP----------- 172 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT-----------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCC-----------
Confidence 1 1 11245889999999999999999999998864 58999999988742211
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC------
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------ 370 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------ 370 (484)
+...|++||+++++++++++.|+... ..||+|++|+||+|+|++...
T Consensus 173 -------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~--~~~i~v~~v~Pg~v~t~~~~~~~~~~~ 225 (286)
T 1xu9_A 173 -------------------------MVAAYSASKFALDGFFSSIRKEYSVS--RVNVSITLCVLGLIDTETAMKAVSGIV 225 (286)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHHHHHHHHH--TCCCEEEEEEECCBCCHHHHHHSCGGG
T ss_pred -------------------------CccHHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEeecCccCChhHHHhccccc
Confidence 12789999999999999999999421 138999999999999998532
Q ss_pred -CCCCCHHhHHHHHHHHHh
Q psy8786 371 -MGNVNIFDDSSTFNAFER 388 (484)
Q Consensus 371 -~~~~~peevA~~~~~L~s 388 (484)
....+|+++|+.++..+.
T Consensus 226 ~~~~~~~~~vA~~i~~~~~ 244 (286)
T 1xu9_A 226 HMQAAPKEECALEIIKGGA 244 (286)
T ss_dssp GGGCBCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 123689999999887664
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=208.73 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=135.4
Q ss_pred CCCCEEEEEcCCchHHHH--HHHHHHhcCCCeEEEEecCchh------------HHHHHHHHHhc---------------
Q psy8786 184 PSERVAVVTGANKGLGFG--IVKSLCEQFDGYIYLTARDKKK------------GAEAVQVLKDR--------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~a--iA~~La~~gga~Vvl~~R~~~~------------~~~~~~~l~~~--------------- 234 (484)
..||+||||||++|||++ +|++|+++ |++|++++|+.+. .+.+.+.+...
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~-Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGP-EAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSS-CCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhC-CCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 579999999999999999 99999998 8999999986432 12222222111
Q ss_pred -----------------------CCC----------------------------------------CccHHHHHHHHHhh
Q psy8786 235 -----------------------AST----------------------------------------VPFAIQAEKTILTN 251 (484)
Q Consensus 235 -----------------------~~~----------------------------------------~~~~~~~~~~~~vN 251 (484)
+.. ..+.++|+.++++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 111 12568999999999
Q ss_pred hHHHH-HHHHHHHHh-h-hcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhH
Q psy8786 252 YLGLV-RTCVFLFPL-L-RRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYA 327 (484)
Q Consensus 252 ~~g~~-~l~~allp~-l-~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 327 (484)
..+.+ .+++++.+. + +++|+||++||.++. ..+.. ....|+
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~-----------------------------------~~~aY~ 261 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIY-----------------------------------REGTIG 261 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTT-----------------------------------TTSHHH
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCcc-----------------------------------ccHHHH
Confidence 99888 777777653 3 346899999999873 32221 126899
Q ss_pred HhHHHHHHHHHHHHHHhhh-hcCCCCeEEEEEeCCcccCCCccCCCC---------------CCHHhHHHHHHHHHhhhc
Q psy8786 328 VSKIGVNLLTRIYQKKFDC-ELGNQDKVINAVHPGYVATNMSSFMGN---------------VNIFDDSSTFNAFERVIS 391 (484)
Q Consensus 328 aSKaAl~~lt~~LA~ela~-~~~~~gIrVNaV~PG~V~T~m~~~~~~---------------~~peevA~~~~~L~s~~a 391 (484)
+||+|+++|+++||.||++ + |||||+|+||+|.|++...... ++||++++.+.||+++
T Consensus 262 ASKaAL~~ltrsLA~ELa~~~----GIrVN~V~PG~v~T~~s~~ip~~p~y~~~~~~~mk~~G~~E~v~e~~~~L~sd-- 335 (418)
T 4eue_A 262 IAKKDLEDKAKLINEKLNRVI----GGRAFVSVNKALVTKASAYIPTFPLYAAILYKVMKEKNIHENCIMQIERMFSE-- 335 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----SCEEEEEECCCCCCHHHHTSTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhCCcc----CeEEEEEECCcCcChhhhcCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHhhc--
Confidence 9999999999999999999 8 9999999999999998765532 7899999999999987
Q ss_pred cccccccc
Q psy8786 392 HFLIGQQI 399 (484)
Q Consensus 392 ~~itG~~i 399 (484)
.+.+|+.+
T Consensus 336 ~~~~g~~~ 343 (418)
T 4eue_A 336 KIYSNEKI 343 (418)
T ss_dssp TTSSSSCC
T ss_pred cccCCCcc
Confidence 56678765
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=183.29 Aligned_cols=166 Identities=12% Similarity=0.056 Sum_probs=130.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc----------hhHHHHHHHHHhc-------C------CCCccHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK----------KKGAEAVQVLKDR-------A------STVPFAIQA 244 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~----------~~~~~~~~~l~~~-------~------~~~~~~~~~ 244 (484)
+++||||++|||++++++|+ + |++|++++|+. +..+++.+.+... + ......+++
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~-g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~ 82 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-K-KAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKN 82 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-T-TSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH-C-CCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 69999999999999999999 8 89999999873 2333444443111 1 011245889
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh
Q psy8786 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
+..+++|+.+++.+++++.+.|+++++||++||..+..... +..
T Consensus 83 ~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~------------------------------------~~~ 126 (202)
T 3d7l_A 83 AVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIV------------------------------------QGA 126 (202)
T ss_dssp HHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCT------------------------------------TCH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCCC------------------------------------ccH
Confidence 99999999999999999999987779999999987632211 127
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc------CCCCCCHHhHHHHHHHHHhhhcccccccc
Q psy8786 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS------FMGNVNIFDDSSTFNAFERVISHFLIGQQ 398 (484)
Q Consensus 325 ~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~------~~~~~~peevA~~~~~L~s~~a~~itG~~ 398 (484)
.|++||++++.+++.++.|+ +. ||+||+|+||++.|++.. .....+++|+|+.+++++ ..+++|+.
T Consensus 127 ~Y~~sK~~~~~~~~~~~~e~-~~----gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~dva~~~~~~~---~~~~~G~~ 198 (202)
T 3d7l_A 127 SAAMANGAVTAFAKSAAIEM-PR----GIRINTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSV---FGAQTGES 198 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-ST----TCEEEEEEECCBGGGHHHHGGGSTTCCCBCHHHHHHHHHHHH---HSCCCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHc-cC----CeEEEEEecCccCCchhhhhhhccccCCCCHHHHHHHHHHhh---hccccCce
Confidence 89999999999999999887 55 899999999999999642 123479999999988776 35788887
Q ss_pred c
Q psy8786 399 I 399 (484)
Q Consensus 399 i 399 (484)
+
T Consensus 199 ~ 199 (202)
T 3d7l_A 199 Y 199 (202)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=186.11 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=141.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh--------------HHHHHHHHHhc-------CCCCccHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--------------GAEAVQVLKDR-------ASTVPFAIQAE 245 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~--------------~~~~~~~l~~~-------~~~~~~~~~~~ 245 (484)
|++|||||++|||++++++|+++ |++|++++|+.++ .+++.+++... .......+.++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~ 80 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARA-GHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGVTAANSG 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCTTSSCHH
T ss_pred cEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCCCcchhHH
Confidence 68999999999999999999998 8999999997532 11222222011 11111134588
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCC
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD 323 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
..+++|+.|++.+++++.+.|++. ++||++||..++..........+......+..... ... ....+.
T Consensus 81 ~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~ 150 (255)
T 2dkn_A 81 LVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE---LAE-------QQGQTH 150 (255)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH---HHH-------HHCCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhh---hcc-------ccCCcc
Confidence 999999999999999999998764 89999999887533211111111100000000000 000 000012
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------------------CCCCHHhHHHHHHH
Q psy8786 324 SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------------GNVNIFDDSSTFNA 385 (484)
Q Consensus 324 ~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------------~~~~peevA~~~~~ 385 (484)
..|++||++++.+++.+++++++. ||++|+|+||.|.|++.... ...+++|+|+.+++
T Consensus 151 ~~Y~~sK~a~~~~~~~~~~~~~~~----gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 226 (255)
T 2dkn_A 151 LAYAGSKYAVTCLARRNVVDWAGR----GVRLNVVAPGAVETPLLQASKADPRYGESTRRFVAPLGRGSEPREVAEAIAF 226 (255)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHT----TCEEEEEEECCBCSHHHHHHHHCTTTHHHHHSCCCTTSSCBCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhc----CcEEEEEcCCcccchhhhhcccchhhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 689999999999999999999877 99999999999999864211 13689999999999
Q ss_pred HHhhhcccccccccccccccee
Q psy8786 386 FERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 386 L~s~~a~~itG~~i~~~~~g~~ 407 (484)
++++.+.+++|+.+ .+++++
T Consensus 227 l~~~~~~~~~G~~~--~v~gg~ 246 (255)
T 2dkn_A 227 LLGPQASFIHGSVL--FVDGGM 246 (255)
T ss_dssp HHSGGGTTCCSCEE--EESTTH
T ss_pred HhCCCcccceeeEE--EecCCe
Confidence 99988889999988 555554
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=221.44 Aligned_cols=186 Identities=16% Similarity=0.151 Sum_probs=142.8
Q ss_pred CCCCCCCCEEEEEcCCch-HHHHHHHHHHhcCCCeEEEE-ecCchhHHHHHHHHHh-------c----------------
Q psy8786 180 GSVDPSERVAVVTGANKG-LGFGIVKSLCEQFDGYIYLT-ARDKKKGAEAVQVLKD-------R---------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassG-IG~aiA~~La~~gga~Vvl~-~R~~~~~~~~~~~l~~-------~---------------- 234 (484)
+.++++||++|||||++| ||+++|+.|+++ |++|+++ +|+.++++++.+++.. .
T Consensus 669 ~~m~l~gKvaLVTGASsGgIG~aIA~~La~~-GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~a 747 (1887)
T 2uv8_A 669 NGVTFKDKYVLITGAGKGSIGAEVLQGLLQG-GAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEA 747 (1887)
T ss_dssp TCBCCTTCEEEEESCCSSSHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHH
T ss_pred ccCCCCCCEEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHH
Confidence 346789999999999998 999999999999 8999988 6776655444333310 0
Q ss_pred -------C-----CC---------------C-----cc--HHHHHHHHHhhhHHHHHHHHHH--HHhhhcC--CEEEEEe
Q psy8786 235 -------A-----ST---------------V-----PF--AIQAEKTILTNYLGLVRTCVFL--FPLLRRH--ARVVNLS 276 (484)
Q Consensus 235 -------~-----~~---------------~-----~~--~~~~~~~~~vN~~g~~~l~~al--lp~l~~~--grIV~iS 276 (484)
. .. . .. .++|+.++++|+.|++.+++++ ++.|++. |+||++|
T Consensus 748 lv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnIS 827 (1887)
T 2uv8_A 748 LIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMS 827 (1887)
T ss_dssp HHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEC
T ss_pred HHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEc
Confidence 1 00 0 12 5789999999999999999988 6777653 7999999
Q ss_pred CCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHH-HHHHHHHhhhhcCCCCeEE
Q psy8786 277 SSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLL-TRIYQKKFDCELGNQDKVI 355 (484)
Q Consensus 277 S~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~l-t~~LA~ela~~~~~~gIrV 355 (484)
|.++... . ...|++||+|+++| ++.++.++++ . |+|
T Consensus 828 S~ag~~g-g-------------------------------------~~aYaASKAAL~~Lttr~lA~ela~----~-IrV 864 (1887)
T 2uv8_A 828 PNHGTFG-G-------------------------------------DGMYSESKLSLETLFNRWHSESWAN----Q-LTV 864 (1887)
T ss_dssp SCTTCSS-C-------------------------------------BTTHHHHHHHGGGHHHHHHHSSCTT----T-EEE
T ss_pred ChHhccC-C-------------------------------------CchHHHHHHHHHHHHHHHHHHHhCC----C-eEE
Confidence 9987432 1 16899999999999 8888887654 3 999
Q ss_pred EEEeCCccc-CCCccCC------------CCCCHHhHHHHHHHHHhhh-ccccccccccccccceeec
Q psy8786 356 NAVHPGYVA-TNMSSFM------------GNVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 356 NaV~PG~V~-T~m~~~~------------~~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~ 409 (484)
|+|+||+|+ |+|.... ...+|+|+|..++||+++. +.+++|+.+...+||++..
T Consensus 865 NaV~PG~V~tT~m~~~~~~~~~~~~~~plr~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG~~~ 932 (1887)
T 2uv8_A 865 CGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQF 932 (1887)
T ss_dssp EEEEECCEECC-----CCTTHHHHHTTSCCCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCSTTT
T ss_pred EEEEecccccccccccchhHHHHHHhcCCCCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCCeec
Confidence 999999999 8886421 1258999999999999998 7899999986555677643
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=172.63 Aligned_cols=160 Identities=17% Similarity=0.069 Sum_probs=123.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------------h---c--------CC-
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------------D---R--------AS- 236 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------------~---~--------~~- 236 (484)
|++|||||++|||+++|++|+++ +|++++|+.++.++..+++. + . +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~ 77 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEEAGPLDLLVHAVGKA 77 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence 67999999999999999999985 99999999876655433221 1 1 10
Q ss_pred -----CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 237 -----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 237 -----~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
.....++++..+++|+.+++.+++++.. ...++||++||..+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~sS~~~~~~~~-------------------------- 129 (207)
T 2yut_A 78 GRASVREAGRDLVEEMLAAHLLTAAFVLKHARF--QKGARAVFFGAYPRYVQVP-------------------------- 129 (207)
T ss_dssp CCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE--EEEEEEEEECCCHHHHSST--------------------------
T ss_pred CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh--cCCcEEEEEcChhhccCCC--------------------------
Confidence 1224468999999999999999998821 2348999999987642211
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----CCCCHHhHHHHHHHH
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----GNVNIFDDSSTFNAF 386 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----~~~~peevA~~~~~L 386 (484)
+...|++||++++.+++.++.++++. ||++|+|+||++.|++.... ...+|+|+|+.++++
T Consensus 130 ----------~~~~Y~~sK~a~~~~~~~~~~~~~~~----gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~dva~~~~~~ 195 (207)
T 2yut_A 130 ----------GFAAYAAAKGALEAYLEAARKELLRE----GVHLVLVRLPAVATGLWAPLGGPPKGALSPEEAARKVLEG 195 (207)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEECCCCBCSGGGGGGTSCCTTCBCHHHHHHHHHHH
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHHHhhh----CCEEEEEecCcccCCCccccCCCCCCCCCHHHHHHHHHHH
Confidence 12789999999999999999999877 99999999999999985422 237999999999999
Q ss_pred Hhhhc
Q psy8786 387 ERVIS 391 (484)
Q Consensus 387 ~s~~a 391 (484)
++...
T Consensus 196 ~~~~~ 200 (207)
T 2yut_A 196 LFREP 200 (207)
T ss_dssp HC--C
T ss_pred HhCCC
Confidence 86543
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-21 Score=220.09 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=143.6
Q ss_pred CCCCCCCCCEEEEEcCCch-HHHHHHHHHHhcCCCeEEEE-ecCchhHHH------------------------------
Q psy8786 179 NGSVDPSERVAVVTGANKG-LGFGIVKSLCEQFDGYIYLT-ARDKKKGAE------------------------------ 226 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassG-IG~aiA~~La~~gga~Vvl~-~R~~~~~~~------------------------------ 226 (484)
.+.++++||+||||||++| ||+++|++|+++ |++|+++ +|+.+++++
T Consensus 469 ~~~msL~GKvALVTGASgGGIGrAIAr~LA~~-GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVe 547 (1688)
T 2pff_A 469 XXXVTFKDKYVLITGAGKGSIGAEVLQGLLQG-GAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVE 547 (1688)
T ss_dssp SSCCCCCSCCEEECSCSSSSTHHHHHHHHHHH-TCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHH
T ss_pred ccccccCCCEEEEECCChHHHHHHHHHHHHHC-cCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHH
Confidence 4456789999999999998 999999999999 8999887 565433222
Q ss_pred -HHHHHHh---------c--------CC-------CCcc--HHHHHHHHHhhhHHHHHHHHHH--HHhhhcC--CEEEEE
Q psy8786 227 -AVQVLKD---------R--------AS-------TVPF--AIQAEKTILTNYLGLVRTCVFL--FPLLRRH--ARVVNL 275 (484)
Q Consensus 227 -~~~~l~~---------~--------~~-------~~~~--~~~~~~~~~vN~~g~~~l~~al--lp~l~~~--grIV~i 275 (484)
+++++.+ . +. .... .++|+.++++|+.|++.+++++ .+.|++. |+||++
T Consensus 548 aLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnI 627 (1688)
T 2pff_A 548 ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPM 627 (1688)
T ss_dssp HHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCC
T ss_pred HHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEE
Confidence 2222211 1 00 0112 5789999999999999999998 7888654 799999
Q ss_pred eCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHH-HHHHHHHhhhhcCCCCeE
Q psy8786 276 SSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLL-TRIYQKKFDCELGNQDKV 354 (484)
Q Consensus 276 SS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~l-t~~LA~ela~~~~~~gIr 354 (484)
||.++... . ...|++||+|+++| ++.++.++++ . |+
T Consensus 628 SSiAG~~G-g-------------------------------------~saYaASKAAL~aLttrsLAeEla~----~-IR 664 (1688)
T 2pff_A 628 SPNHGTFG-G-------------------------------------DGMYSESKLSLETLFNRWHSESWAN----Q-LT 664 (1688)
T ss_dssp CSCTTTSS-C-------------------------------------BTTHHHHHHHHTHHHHHTTTSSCTT----T-EE
T ss_pred EChHhccC-C-------------------------------------chHHHHHHHHHHHHHHHHHHHHcCC----C-eE
Confidence 99987432 1 16899999999999 7777766543 3 99
Q ss_pred EEEEeCCccc-CCCccCC------------CCCCHHhHHHHHHHHHhhh-ccccccccccccccceeec
Q psy8786 355 INAVHPGYVA-TNMSSFM------------GNVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 355 VNaV~PG~V~-T~m~~~~------------~~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~ 409 (484)
||+|+||+|+ |+|.... ...+|+|+|+.++||+++. +.+++|+.+...+||++..
T Consensus 665 VNaVaPG~V~TT~M~~~~e~~~~~l~~iplR~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VDVDGG~~~ 733 (1688)
T 2pff_A 665 VCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQF 733 (1688)
T ss_dssp CCCCCCCCCCCCSSSCTTTTCSTTTSSSSCCCCCCCTTHHHHHHHTSTTHHHHHTTSCCCCCCSCSGGG
T ss_pred EEEEEECcCcCCcccCCchHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCccccccCcEEEEEcCCCeee
Confidence 9999999999 7875421 1258999999999999998 7899999986556687653
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=214.98 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=142.9
Q ss_pred CCCCCCCCEEEEEcCCch-HHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHHh-------c----------------
Q psy8786 180 GSVDPSERVAVVTGANKG-LGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLKD-------R---------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassG-IG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~~-------~---------------- 234 (484)
+.++++||+||||||++| ||+++|+.|+++ |++|++++ |+.+++++..+++.. .
T Consensus 646 ~~m~L~gKvaLVTGASgGgIG~aIAr~LA~~-GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~a 724 (1878)
T 2uv9_A 646 SGLTFQGKHALMTGAGAGSIGAEVLQGLLSG-GAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEA 724 (1878)
T ss_dssp HCBCCTTCEEEEESCCTTSHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHH
T ss_pred cCCCCCCCEEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHH
Confidence 346789999999999999 999999999999 89999884 655544333222200 0
Q ss_pred -------C---C--------------------CCcc--HHHHHHHHHhhhHHHHHHHHH--HHHhhhcC--CEEEEEeCC
Q psy8786 235 -------A---S--------------------TVPF--AIQAEKTILTNYLGLVRTCVF--LFPLLRRH--ARVVNLSSS 278 (484)
Q Consensus 235 -------~---~--------------------~~~~--~~~~~~~~~vN~~g~~~l~~a--llp~l~~~--grIV~iSS~ 278 (484)
. . .... .++|+.++++|+.|++.+++. +++.|++. |+||++||.
T Consensus 725 lv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ 804 (1878)
T 2uv9_A 725 LVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPN 804 (1878)
T ss_dssp HHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSC
T ss_pred HHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcch
Confidence 1 0 0112 478999999999999999987 67777553 799999999
Q ss_pred CccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHH-hhhhcCCCCeEEEE
Q psy8786 279 AGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK-FDCELGNQDKVINA 357 (484)
Q Consensus 279 ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~e-la~~~~~~gIrVNa 357 (484)
++.... ...|++||+|+++|++.++.+ ++ +. |+||+
T Consensus 805 ag~~gg--------------------------------------~~aYaASKAAL~aLt~~laAeEla----~~-IrVNa 841 (1878)
T 2uv9_A 805 HGTFGN--------------------------------------DGLYSESKLALETLFNRWYSESWG----NY-LTICG 841 (1878)
T ss_dssp SSSSSC--------------------------------------CSSHHHHHHHHTTHHHHHHHSTTT----TT-EEEEE
T ss_pred hhccCC--------------------------------------chHHHHHHHHHHHHHHHHHHHHcC----CC-eEEEE
Confidence 884321 168999999999999876654 43 33 99999
Q ss_pred EeCCccc-CCCccC------------CCCCCHHhHHHHHHHHHhhhc-cccccccccccccceeec
Q psy8786 358 VHPGYVA-TNMSSF------------MGNVNIFDDSSTFNAFERVIS-HFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 358 V~PG~V~-T~m~~~------------~~~~~peevA~~~~~L~s~~a-~~itG~~i~~~~~g~~~~ 409 (484)
|+||+|+ |+|... ....+|+|+|+.++||+++.+ .+++|+.+...+||++..
T Consensus 842 VaPG~V~gT~m~~~~~~~~~~~~~~plr~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~ 907 (1878)
T 2uv9_A 842 AVIGWTRGTGLMSANNLVAEGVEKLGVRTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQF 907 (1878)
T ss_dssp EEECCBCCTTSCSHHHHTHHHHHTTTCCCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGG
T ss_pred EEecceecCcccccchhhHHHHHhcCCCCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCccc
Confidence 9999999 998642 123689999999999999987 899999986556777654
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=182.06 Aligned_cols=163 Identities=13% Similarity=0.012 Sum_probs=125.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEE-ecCc-------------hhHHHHHHHHHhc---------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLT-ARDK-------------KKGAEAVQVLKDR--------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~-~R~~-------------~~~~~~~~~l~~~--------------- 234 (484)
.+|++|||||++|||+++|+.|+++ |++ |+++ +|+. +.+++..+++...
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~-G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARD-GAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHH-TCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHc-CCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 6799999999999999999999999 665 7788 8883 3444455544321
Q ss_pred ----------------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-c
Q psy8786 235 ----------------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-L 282 (484)
Q Consensus 235 ----------------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~ 282 (484)
.....+.++++.++++|+.|++++.+++.+.+++ .++||++||.++. +
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g 408 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG 408 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence 1123356899999999999999999999998865 4799999999984 3
Q ss_pred cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 283 SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
.+. +..|+++|+++++|+ .++..+ ||+||+|+||+
T Consensus 409 ~~g-------------------------------------~~~YaaaKa~l~~lA----~~~~~~----gi~v~sI~pG~ 443 (525)
T 3qp9_A 409 GAG-------------------------------------QGAYAAGTAFLDALA----GQHRAD----GPTVTSVAWSP 443 (525)
T ss_dssp CTT-------------------------------------CHHHHHHHHHHHHHH----TSCCSS----CCEEEEEEECC
T ss_pred CCC-------------------------------------CHHHHHHHHHHHHHH----HHHHhC----CCCEEEEECCc
Confidence 332 278999999999875 444444 99999999999
Q ss_pred ccCCCccCC-----------CCCCHHhHHHHHHHHHhhhccc
Q psy8786 363 VATNMSSFM-----------GNVNIFDDSSTFNAFERVISHF 393 (484)
Q Consensus 363 V~T~m~~~~-----------~~~~peevA~~~~~L~s~~a~~ 393 (484)
++|+|.... ...+|+++++.+.++++.....
T Consensus 444 ~~tgm~~~~~~~~~~~~~g~~~l~pee~a~~l~~~l~~~~~~ 485 (525)
T 3qp9_A 444 WEGSRVTEGATGERLRRLGLRPLAPATALTALDTALGHGDTA 485 (525)
T ss_dssp BTTSGGGSSHHHHHHHHTTBCCBCHHHHHHHHHHHHHHTCSE
T ss_pred cccccccchhhHHHHHhcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence 999997321 2379999999999888655443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=209.37 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=132.2
Q ss_pred CCCCCCEEEEEcCCch-HHHHHHHHHHhcCCCeEEEEecCchh-----HHHHHHHHHhc---------------------
Q psy8786 182 VDPSERVAVVTGANKG-LGFGIVKSLCEQFDGYIYLTARDKKK-----GAEAVQVLKDR--------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassG-IG~aiA~~La~~gga~Vvl~~R~~~~-----~~~~~~~l~~~--------------------- 234 (484)
..|+||+||||||++| ||+++|+.|+++ |++|++++|+.+. ++++.+++...
T Consensus 2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~-GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2132 XXXXDEVAVVTGASKGSIAASVVGQLLDG-GATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCCCEEEEESCCTTSHHHHHHHHHHHT-TCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHHC-CCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 3489999999999999 999999999999 9999999998765 44444444211
Q ss_pred ----C---------------CCC---------c----c----HHHHHHHHHhhhHHHHHHHHHHHHhhhcCC-----E-E
Q psy8786 235 ----A---------------STV---------P----F----AIQAEKTILTNYLGLVRTCVFLFPLLRRHA-----R-V 272 (484)
Q Consensus 235 ----~---------------~~~---------~----~----~~~~~~~~~vN~~g~~~l~~allp~l~~~g-----r-I 272 (484)
. ... . . ...++..+++|+.+++.+++++.+.|++.+ . |
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 1 000 0 1 123455599999999999999999986532 2 2
Q ss_pred EEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHH--hhhhcCC
Q psy8786 273 VNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK--FDCELGN 350 (484)
Q Consensus 273 V~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~e--la~~~~~ 350 (484)
++.++..+... . ..+|++||+|+++|+|++|.| +++
T Consensus 2291 ~~~ss~~g~~g-~-------------------------------------~~aYsASKaAl~~LtrslA~E~~~a~---- 2328 (3089)
T 3zen_D 2291 LPGSPNRGMFG-G-------------------------------------DGAYGEAKSALDALENRWSAEKSWAE---- 2328 (3089)
T ss_dssp EEECSSTTSCS-S-------------------------------------CSSHHHHGGGHHHHHHHHHHCSTTTT----
T ss_pred EECCcccccCC-C-------------------------------------chHHHHHHHHHHHHHHHHHhccccCC----
Confidence 22332222110 1 158999999999999999999 553
Q ss_pred CCeEEEEEeCCccc-CCCccCCC------------CCCHHhHHHHHHHHHhhhcccc-cccccccccccee
Q psy8786 351 QDKVINAVHPGYVA-TNMSSFMG------------NVNIFDDSSTFNAFERVISHFL-IGQQINTFIPAIY 407 (484)
Q Consensus 351 ~gIrVNaV~PG~V~-T~m~~~~~------------~~~peevA~~~~~L~s~~a~~i-tG~~i~~~~~g~~ 407 (484)
+|+||+|+||+|+ |++..... ..+|+|+|..++||+|+.+.++ +|+.+...++|++
T Consensus 2329 -~IrVn~v~PG~v~tT~l~~~~~~~~~~~~~~~~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~ 2398 (3089)
T 3zen_D 2329 -RVSLAHALIGWTKGTGLMGQNDAIVSAVEEAGVTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGL 2398 (3089)
T ss_dssp -TEEEEEEECCCEECSTTTTTTTTTHHHHGGGSCBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSC
T ss_pred -CeEEEEEeecccCCCcccccchhHHHHHHhcCCCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCc
Confidence 5999999999999 77654321 1479999999999999987765 4455644555665
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-17 Score=153.89 Aligned_cols=169 Identities=17% Similarity=0.095 Sum_probs=123.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH-H------------Hhc---------CCCCc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-L------------KDR---------ASTVP 239 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~-l------------~~~---------~~~~~ 239 (484)
.+++||+++||||+||||++++++|+++ |++|++++|+.++.++.... + .+. .....
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhC-CCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 4578999999999999999999999999 89999999998877654321 1 000 11111
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccC
Q psy8786 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319 (484)
Q Consensus 240 ~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (484)
..++++..+++|+.+++++++++... ..++||++||..+.......
T Consensus 96 ~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~~~~~~~~~~-------------------------------- 141 (236)
T 3e8x_A 96 PHTGADKTILIDLWGAIKTIQEAEKR--GIKRFIMVSSVGTVDPDQGP-------------------------------- 141 (236)
T ss_dssp TTSCHHHHHHTTTHHHHHHHHHHHHH--TCCEEEEECCTTCSCGGGSC--------------------------------
T ss_pred CCCCccccchhhHHHHHHHHHHHHHc--CCCEEEEEecCCCCCCCCCh--------------------------------
Confidence 22568889999999999999998553 34799999997653221100
Q ss_pred CCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-----------CCCCCHHhHHHHHHHHHh
Q psy8786 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-----------MGNVNIFDDSSTFNAFER 388 (484)
Q Consensus 320 ~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-----------~~~~~peevA~~~~~L~s 388 (484)
.+...|+.+|++++.+++ .. ||++++|+||++.|+.... .....++|+|+.++++++
T Consensus 142 -~~~~~Y~~sK~~~e~~~~-------~~----gi~~~~lrpg~v~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 209 (236)
T 3e8x_A 142 -MNMRHYLVAKRLADDELK-------RS----SLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAELVD 209 (236)
T ss_dssp -GGGHHHHHHHHHHHHHHH-------HS----SSEEEEEEECSEECSCCCSEEEEESSCSCCCCCEEHHHHHHHHHHHTT
T ss_pred -hhhhhHHHHHHHHHHHHH-------HC----CCCEEEEeCCcccCCCCCCeEEeccCCCcccCcEeHHHHHHHHHHHhc
Confidence 012789999999998875 23 8999999999999886432 123689999999999986
Q ss_pred hhccccccccc
Q psy8786 389 VISHFLIGQQI 399 (484)
Q Consensus 389 ~~a~~itG~~i 399 (484)
... ..|+.+
T Consensus 210 ~~~--~~g~~~ 218 (236)
T 3e8x_A 210 QQH--TIGKTF 218 (236)
T ss_dssp CGG--GTTEEE
T ss_pred Ccc--ccCCeE
Confidence 543 566665
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=153.85 Aligned_cols=171 Identities=19% Similarity=0.130 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh---------------HHHHHHHHHhc-----CCCCccHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK---------------GAEAVQVLKDR-----ASTVPFAIQA 244 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~---------------~~~~~~~l~~~-----~~~~~~~~~~ 244 (484)
++|+||||||+||||++++++|+++ |++|++++|++++ .+...+.+... .......+.+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~~~~~~ 80 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPM-AEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGISVEKPF 80 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGG-EEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCCSCCCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc-CCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCcCcCCH
Confidence 4689999999999999999999999 8999999997532 12222222211 1222344678
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh
Q psy8786 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
+..+++|+.|++++++++.+. ..++||++||..++....... .+.. .....+..
T Consensus 81 ~~~~~~N~~g~~~l~~a~~~~--~~~~iv~~SS~~~~g~~~~~~------------------~~~e------~~~~~~~~ 134 (267)
T 3rft_A 81 EQILQGNIIGLYNLYEAARAH--GQPRIVFASSNHTIGYYPQTE------------------RLGP------DVPARPDG 134 (267)
T ss_dssp HHHHHHHTHHHHHHHHHHHHT--TCCEEEEEEEGGGGTTSBTTS------------------CBCT------TSCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCEEEEEcchHHhCCCCCCC------------------CCCC------CCCCCCCC
Confidence 899999999999999998553 347999999988753221100 0000 00111337
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---CCCCHHhHHHHHHHHHhh
Q psy8786 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 325 ~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---~~~~peevA~~~~~L~s~ 389 (484)
.|+.||++++.+++.++.++ |+++++|+||.|.+++.... ....++++++.+..+...
T Consensus 135 ~Y~~sK~~~e~~~~~~a~~~-------g~~~~~vr~~~v~~~~~~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 135 LYGVSKCFGENLARMYFDKF-------GQETALVRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECBCSSSCCSTTHHHHBCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHh-------CCeEEEEEeecccCCCCCCCceeeEEcHHHHHHHHHHHHhC
Confidence 89999999999999988765 78999999999988765432 126789999988776643
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=166.01 Aligned_cols=157 Identities=17% Similarity=0.048 Sum_probs=118.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCc---hhHHHHHHHHHhc---------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDK---KKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~---~~~~~~~~~l~~~--------------------------- 234 (484)
+|++|||||++|||+++|+.|+++ |+ +|++++|+. +..++..+++...
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~-Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQ-GAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHT-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCEEEEECCCCchHHHHHHHHHHC-CCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999 66 899999963 3344444444321
Q ss_pred ----------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhh
Q psy8786 235 ----------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~ 296 (484)
+ ....+.++++.++++|+.|++++.+.+.+.. .++||++||.++ .+.+.
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~--~~~iV~~SS~a~~~g~~g----------- 384 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD--LDAFVLFSSGAAVWGSGG----------- 384 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC--CSEEEEEEEHHHHTTCTT-----------
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC--CCEEEEEeChHhcCCCCC-----------
Confidence 1 1123458999999999999999999887753 589999999988 33332
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-CC---
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-MG--- 372 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-~~--- 372 (484)
+..|++||+++++|++. +..+ ||++|+|+||++.|..+.. ..
T Consensus 385 --------------------------~~~YaAaKa~ldala~~----~~~~----Gi~v~sV~pG~w~~~gm~~~~~~~~ 430 (496)
T 3mje_A 385 --------------------------QPGYAAANAYLDALAEH----RRSL----GLTASSVAWGTWGEVGMATDPEVHD 430 (496)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHH----HHHT----TCCCEEEEECEESSSCC------CH
T ss_pred --------------------------cHHHHHHHHHHHHHHHH----HHhc----CCeEEEEECCcccCCccccChHHHH
Confidence 27899999999988864 4445 9999999999987654322 11
Q ss_pred --------CCCHHhHHHHHHHHHhhh
Q psy8786 373 --------NVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 373 --------~~~peevA~~~~~L~s~~ 390 (484)
..+|++++..+.++....
T Consensus 431 ~l~~~g~~~l~pe~~~~~l~~~l~~~ 456 (496)
T 3mje_A 431 RLVRQGVLAMEPEHALGALDQMLEND 456 (496)
T ss_dssp HHHHTTEEEECHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHcCC
Confidence 268899999888777543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=177.16 Aligned_cols=155 Identities=18% Similarity=0.133 Sum_probs=120.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHH-hcCCC-eEEEEecC---chhHHHHHHHHHhc-------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLC-EQFDG-YIYLTARD---KKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La-~~gga-~Vvl~~R~---~~~~~~~~~~l~~~------------------------- 234 (484)
.+|++|||||++|||+++|+.|+ ++ |+ +|++++|+ .+++++.+++++..
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~ 607 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIER-GVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP 607 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTS-SCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred cccceeeccCCCCcHHHHHHHHHHHc-CCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 68999999999999999999999 67 77 69999998 44566666666432
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHh
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLR 295 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~ 295 (484)
.....+.++|+..+++|+.|++++++++.+.| +||++||.++ .+.+.
T Consensus 608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l----~iV~~SS~ag~~g~~g---------- 673 (795)
T 3slk_A 608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV----ALVLFSSVSGVLGSGG---------- 673 (795)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS----EEEEEEETHHHHTCSS----------
T ss_pred HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC----EEEEEccHHhcCCCCC----------
Confidence 11123458999999999999999999998877 8999999998 33333
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----- 370 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----- 370 (484)
+..|++||+ |+++|+++++.+ ||++|+|+||++.|++...
T Consensus 674 ---------------------------~~~YaAaka----~~~alA~~~~~~----Gi~v~sI~pG~v~t~g~~~~~~~~ 718 (795)
T 3slk_A 674 ---------------------------QGNYAAANS----FLDALAQQRQSR----GLPTRSLAWGPWAEHGMASTLREA 718 (795)
T ss_dssp ---------------------------CHHHHHHHH----HHHHHHHHHHHT----TCCEEEEEECCCSCCCHHHHHHHH
T ss_pred ---------------------------CHHHHHHHH----HHHHHHHHHHHc----CCeEEEEECCeECcchhhccccHH
Confidence 289999995 666777777777 9999999999999875321
Q ss_pred ---------CCCCCHHhHHHHHHHHHhh
Q psy8786 371 ---------MGNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 371 ---------~~~~~peevA~~~~~L~s~ 389 (484)
....+++|+...+..++..
T Consensus 719 ~~~~~~~~g~~~l~~~e~~~~~~~~l~~ 746 (795)
T 3slk_A 719 EQDRLARSGLLPISTEEGLSQFDAACGG 746 (795)
T ss_dssp HHHHHHHTTBCCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhC
Confidence 1236777777776655533
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=145.67 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=111.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHH--------------HHHHhc----------CC
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAV--------------QVLKDR----------AS 236 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~--------------~~l~~~----------~~ 236 (484)
+|++|+++||||+||||++++++|+++ |+ +|++++|+.++.++.. +.+... ..
T Consensus 15 ~m~~~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag 93 (242)
T 2bka_A 15 RMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 93 (242)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred hhcCCeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence 357899999999999999999999999 88 9999999865332110 001110 11
Q ss_pred CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 237 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 237 ~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
.......++..+++|+.+++.+++++.+. ..++||++||..++..+
T Consensus 94 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~iv~~SS~~~~~~~-------------------------------- 139 (242)
T 2bka_A 94 TTRGKAGAEGFVRVDRDYVLKSAELAKAG--GCKHFNLLSSKGADKSS-------------------------------- 139 (242)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECCTTCCTTC--------------------------------
T ss_pred cccccCCcccceeeeHHHHHHHHHHHHHC--CCCEEEEEccCcCCCCC--------------------------------
Confidence 11123467788999999999998876542 24799999998775321
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCe-EEEEEeCCcccCCCccC-------------CC-------CCC
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK-VINAVHPGYVATNMSSF-------------MG-------NVN 375 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gI-rVNaV~PG~V~T~m~~~-------------~~-------~~~ 375 (484)
...|+++|++++.+++. + ++ ++|+|+||.+.|++... .. ..+
T Consensus 140 ------~~~Y~~sK~~~e~~~~~----~-------~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (242)
T 2bka_A 140 ------NFLYLQVKGEVEAKVEE----L-------KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVP 202 (242)
T ss_dssp ------SSHHHHHHHHHHHHHHT----T-------CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEE
T ss_pred ------cchHHHHHHHHHHHHHh----c-------CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCccccCCcccC
Confidence 15799999999998853 1 56 89999999999985321 01 146
Q ss_pred HHhHHHHHHHHHhhh
Q psy8786 376 IFDDSSTFNAFERVI 390 (484)
Q Consensus 376 peevA~~~~~L~s~~ 390 (484)
++|+|+.+++++++.
T Consensus 203 ~~dva~~~~~~~~~~ 217 (242)
T 2bka_A 203 VVTVVRAMLNNVVRP 217 (242)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCc
Confidence 777777777777544
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-14 Score=143.70 Aligned_cols=168 Identities=22% Similarity=0.157 Sum_probs=110.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH------------hc---------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK------------DR--------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~------------~~--------------- 234 (484)
..+++|+||||||+|+||++++++|+++ |++|++++|+.++.+...+.+. .+
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 85 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCC
Confidence 3468899999999999999999999998 8999999999776654443321 00
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccc-------hH-HHHHHHhhccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQIT-------NL-ELKKRLRQLREPV 301 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~-------~~-~~~~~~~~~~~~~ 301 (484)
.......++++..+++|+.|+.++++++.+. ...++||++||...+..+.. .+ ++......
T Consensus 86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~----- 159 (342)
T 1y1p_A 86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAAT-PSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID----- 159 (342)
T ss_dssp EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTC-TTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH-----
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhh-----
Confidence 0000111356778999999999999988752 12479999999876422110 00 00000000
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
.. ... . ......+...|+.||++.+.+++.++.+++. |+++++|+||.+.++...
T Consensus 160 ---~~-~~~--~--~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~-----~~~~~~~rp~~v~g~~~~ 214 (342)
T 1y1p_A 160 ---KA-KTL--P--ESDPQKSLWVYAASKTEAELAAWKFMDENKP-----HFTLNAVLPNYTIGTIFD 214 (342)
T ss_dssp ---HH-HHS--C--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----SSEEEEEEESEEECCCSC
T ss_pred ---hh-ccc--c--ccccccchHHHHHHHHHHHHHHHHHHHhcCC-----CceEEEEcCCceECCCCC
Confidence 00 000 0 0000001268999999999999999887642 799999999999888643
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-14 Score=141.11 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=101.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
.+|+||||||+||||++++++|+++ |++|++++|+.+..++..+.+...
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHC-CCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 4689999999999999999999999 899999999755433322222110
Q ss_pred ---CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccc
Q psy8786 235 ---ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 235 ---~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
..... ..+..+..+++|+.+++.+++++... ..++||++||.+.++.+... .+
T Consensus 83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~SS~~~~g~~~~~-------------------~~ 141 (341)
T 3enk_A 83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER--AVKRIVFSSSATVYGVPERS-------------------PI 141 (341)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGBCSCSSS-------------------SB
T ss_pred EECccccccCccccChHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEecceEecCCCCC-------------------CC
Confidence 00000 12344577889999999988876542 23799999997765332210 00
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.. . ....+...|+.||++.+.+++.++.++. |++++.++||.|..+
T Consensus 142 ~e----~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~~------~~~~~~lRp~~v~G~ 187 (341)
T 3enk_A 142 DE----T--FPLSATNPYGQTKLMAEQILRDVEAADP------SWRVATLRYFNPVGA 187 (341)
T ss_dssp CT----T--SCCBCSSHHHHHHHHHHHHHHHHHHHCT------TCEEEEEEECEEECC
T ss_pred CC----C--CCCCCCChhHHHHHHHHHHHHHHhhcCC------CceEEEEeeccccCC
Confidence 00 0 0011237899999999999999887652 599999999888655
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.3e-15 Score=156.31 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=120.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCch---hHHHHHHHHHhc--------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKK---KGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~---~~~~~~~~l~~~-------------------------- 234 (484)
.+|++|||||++|||+++|+.|+++ |+ +|++++|+.. ..++..+++...
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~-G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l 336 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAE-GAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP 336 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHT-TCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999999998 66 6999999863 334444444321
Q ss_pred -------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhcccc
Q psy8786 235 -------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 -------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~ 300 (484)
+. .....++++..+++|+.|++++.+++.+. +..++||++||.++ .+.+.
T Consensus 337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~~V~~SS~a~~~g~~g--------------- 400 (511)
T 2z5l_A 337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI-KGLDAFVLFSSVTGTWGNAG--------------- 400 (511)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC-TTCCCEEEEEEGGGTTCCTT---------------
T ss_pred cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCEEEEEeCHHhcCCCCC---------------
Confidence 00 11245789999999999999999876542 24589999999987 33322
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cCCCccC---------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-ATNMSSF--------- 370 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T~m~~~--------- 370 (484)
+..|+++|++++.|++.+ ..+ ||++++|+||++ .|+|...
T Consensus 401 ----------------------~~~YaaaKa~ld~la~~~----~~~----gi~v~sv~pG~~~~tgm~~~~~~~~~~~~ 450 (511)
T 2z5l_A 401 ----------------------QGAYAAANAALDALAERR----RAA----GLPATSVAWGLWGGGGMAAGAGEESLSRR 450 (511)
T ss_dssp ----------------------BHHHHHHHHHHHHHHHHH----HTT----TCCCEEEEECCBCSTTCCCCHHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHHHH----HHc----CCcEEEEECCcccCCcccccccHHHHHhc
Confidence 278999999999998754 334 899999999999 7888643
Q ss_pred -CCCCCHHhHHHHHHHHHhh
Q psy8786 371 -MGNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 371 -~~~~~peevA~~~~~L~s~ 389 (484)
....+++++++.+...+..
T Consensus 451 g~~~l~~e~~a~~l~~al~~ 470 (511)
T 2z5l_A 451 GLRAMDPDAAVDALLGAMGR 470 (511)
T ss_dssp TBCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhC
Confidence 2347899999998877644
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=136.37 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh--------------HHHHHHHHHh---c-----CCCCc---
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--------------GAEAVQVLKD---R-----ASTVP--- 239 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~--------------~~~~~~~l~~---~-----~~~~~--- 239 (484)
+-|+||||||+|+||++++++|+++ |++|++++|+.+. .+...+.+.. + .....
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~ 89 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQ-NVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKD 89 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHH
T ss_pred CcceEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccchhh
Confidence 5689999999999999999999998 8999999887421 1222222332 1 11111
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccc--cchHHHHHHHhhccccccccccccccCCCcccc
Q psy8786 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQ--ITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317 (484)
Q Consensus 240 ~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (484)
..++++..+++|+.|+.++++++ +.+...++||++||.+.++.. ... .+....
T Consensus 90 ~~~~~~~~~~~Nv~g~~~l~~a~-~~~~~~~~iv~~SS~~v~g~~~~~~~-------------------~~~E~~----- 144 (321)
T 2pk3_A 90 SWLNKKGTFSTNVFGTLHVLDAV-RDSNLDCRILTIGSSEEYGMILPEES-------------------PVSEEN----- 144 (321)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHH-HHHTCCCEEEEEEEGGGTBSCCGGGC-------------------SBCTTS-----
T ss_pred hhhcHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEEccHHhcCCCCCCCC-------------------CCCCCC-----
Confidence 11357889999999999999998 555446899999998764322 100 000000
Q ss_pred cCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 318 ~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...+...|+.||++.+.+++.++.++ |++++.|+||.|.++..
T Consensus 145 -~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilrp~~v~g~~~ 187 (321)
T 2pk3_A 145 -QLRPMSPYGVSKASVGMLARQYVKAY-------GMDIIHTRTFNHIGPGQ 187 (321)
T ss_dssp -CCBCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECTTC
T ss_pred -CCCCCCccHHHHHHHHHHHHHHHHHc-------CCCEEEEEeCcccCcCC
Confidence 01123789999999999999888763 89999999999877653
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=154.19 Aligned_cols=157 Identities=18% Similarity=0.085 Sum_probs=115.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCch---hHHHHHHHHHhc--------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKK---KGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~---~~~~~~~~l~~~-------------------------- 234 (484)
.+|++|||||++|||+++|+.|+++ |+ +|++++|+.. ..++..+++...
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~-G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~ 303 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 303 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999 66 5999999864 334444433321
Q ss_pred -----------CC------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhh
Q psy8786 235 -----------AS------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------~~------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~ 296 (484)
+. ...+.++++.++++|+.|++++.+++.+. +.++||++||.++ .+.+.
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~--~~~~~V~~SS~a~~~g~~g----------- 370 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFSSFASAFGAPG----------- 370 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEEEHHHHTCCTT-----------
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC--CCCEEEEEcChHhcCCCCC-----------
Confidence 00 02245889999999999999999987652 3589999999887 33222
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC-CccCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN-MSSFM---- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~-m~~~~---- 371 (484)
+..|+++|++++.|++. +..+ ||++++|+||++.|+ |....
T Consensus 371 --------------------------~~~Yaaaka~l~~la~~----~~~~----gi~v~~i~pG~~~~~gm~~~~~~~~ 416 (486)
T 2fr1_A 371 --------------------------LGGYAPGNAYLDGLAQQ----RRSD----GLPATAVAWGTWAGSGMAEGPVADR 416 (486)
T ss_dssp --------------------------CTTTHHHHHHHHHHHHH----HHHT----TCCCEEEEECCBC------------
T ss_pred --------------------------CHHHHHHHHHHHHHHHH----HHhc----CCeEEEEECCeeCCCcccchhHHHH
Confidence 27899999999988754 4445 899999999999876 43221
Q ss_pred ------CCCCHHhHHHHHHHHHhh
Q psy8786 372 ------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 ------~~~~peevA~~~~~L~s~ 389 (484)
...+++++++.+..++..
T Consensus 417 ~~~~g~~~i~~e~~a~~l~~~l~~ 440 (486)
T 2fr1_A 417 FRRHGVIEMPPETACRALQNALDR 440 (486)
T ss_dssp CTTTTEECBCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhC
Confidence 136899999998887754
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-13 Score=136.97 Aligned_cols=164 Identities=12% Similarity=-0.008 Sum_probs=103.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHH-----------------------HHHHHHh--c------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAE-----------------------AVQVLKD--R------ 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~-----------------------~~~~l~~--~------ 234 (484)
|+||||||+|+||++++++|+++ |++|++++|+. ...++ ..+.+.. .
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cEEEEeCCCchhHHHHHHHHHhC-CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 57999999999999999999998 89999998742 11111 1111111 1
Q ss_pred CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
..... ..++++..+++|+.|+.++++++.+... .++||++||.+.+....... ..+.. .........
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~~~iv~~SS~~v~g~~~~~~--------~~e~~-~~~~~~~~~ 150 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNS-NCNIIYSSTNKVYGDLEQYK--------YNETE-TRYTCVDKP 150 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEEEEGGGGTTCTTSC--------EEECS-SCEEETTCT
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEeccHHHhCCCCcCC--------ccccc-ccccccccc
Confidence 11111 1246778899999999999999988653 36999999987543211100 00000 000000000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
..........+...|+.||++.+.+++.++.++ ||++++|+||.|.++..
T Consensus 151 ~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilrp~~v~g~~~ 200 (347)
T 1orr_A 151 NGYDESTQLDFHSPYGCSKGAADQYMLDYARIF-------GLNTVVFRHSSMYGGRQ 200 (347)
T ss_dssp TCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEECTTC
T ss_pred cCccccCCCCCCCchHHHHHHHHHHHHHHHHHh-------CCcEEEEccCceeCcCC
Confidence 000000011134789999999999999988764 79999999999988753
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=136.12 Aligned_cols=170 Identities=11% Similarity=-0.020 Sum_probs=110.9
Q ss_pred CEEEEEcCCchHHHHHHHHHH-hcCCCeEEEEecCch-hHHHHHHHHHhc---CCCCccHHHHHHHHH-----hhhHH--
Q psy8786 187 RVAVVTGANKGLGFGIVKSLC-EQFDGYIYLTARDKK-KGAEAVQVLKDR---ASTVPFAIQAEKTIL-----TNYLG-- 254 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La-~~gga~Vvl~~R~~~-~~~~~~~~l~~~---~~~~~~~~~~~~~~~-----vN~~g-- 254 (484)
|+++||||+||||++++++|+ ++ |++|++++|+++ ++++..+.-... .......+.++..++ +|..|
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~ 84 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT-DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES 84 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence 789999999999999999999 77 899999999987 655432110000 011112233333332 11111
Q ss_pred HHHHHHHHHHhhhcC--CEEEEEeCCCcccc-ccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh-hhHHhH
Q psy8786 255 LVRTCVFLFPLLRRH--ARVVNLSSSAGHLS-QITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS-AYAVSK 330 (484)
Q Consensus 255 ~~~l~~allp~l~~~--grIV~iSS~ag~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~aSK 330 (484)
.+. ++.+++.+++. ++||++||..++.. +.....+... ... .|+.+|
T Consensus 85 n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~----------------------------~~~~~y~~~K 135 (221)
T 3r6d_A 85 GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFD----------------------------NLPISYVQGE 135 (221)
T ss_dssp HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHH----------------------------TSCHHHHHHH
T ss_pred Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCccccccccc----------------------------ccccHHHHHH
Confidence 112 77777777653 69999999887432 2111111000 003 799999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC-CccCC-----------CCCCHHhHHHHHHHHH--hhhcccccc
Q psy8786 331 IGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN-MSSFM-----------GNVNIFDDSSTFNAFE--RVISHFLIG 396 (484)
Q Consensus 331 aAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~-m~~~~-----------~~~~peevA~~~~~L~--s~~a~~itG 396 (484)
.+++.+++. . ||++++|+||++.++ ..... ...+++|+|+.+++++ ++.+.++.+
T Consensus 136 ~~~e~~~~~-------~----~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~ 204 (221)
T 3r6d_A 136 RQARNVLRE-------S----NLNYTILRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRT 204 (221)
T ss_dssp HHHHHHHHH-------S----CSEEEEEEECEEECCTTCCCCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGGTTE
T ss_pred HHHHHHHHh-------C----CCCEEEEechhhcCCCCCcceeeccCCccCCCceeeHHHHHHHHHHHHHhcChhhhhcc
Confidence 999987742 3 899999999999887 32211 0257899999999999 887777655
Q ss_pred c
Q psy8786 397 Q 397 (484)
Q Consensus 397 ~ 397 (484)
.
T Consensus 205 ~ 205 (221)
T 3r6d_A 205 S 205 (221)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=134.66 Aligned_cols=178 Identities=16% Similarity=-0.012 Sum_probs=119.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH--------H-----HHh----c------C--CCCccH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ--------V-----LKD----R------A--STVPFA 241 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~--------~-----l~~----~------~--~~~~~~ 241 (484)
|+||||||+|+||++++++|+++ |++|++++|+.+...+... + +.. + . ......
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~d~vih~A~~~~~~~~~ 79 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVEL-GYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKGDVVFHFAANPEVRLST 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCCSEEEECCSSCSSSGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCCCEEEECCCCCCchhhh
Confidence 46999999999999999999999 8999999987543221100 0 000 1 0 112234
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 242 ~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
++++..+++|+.++.++++++... ..++||++||...++..... .... . ....
T Consensus 80 ~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~~vyg~~~~~-------------------~~~e----~--~~~~ 132 (312)
T 3ko8_A 80 TEPIVHFNENVVATFNVLEWARQT--GVRTVVFASSSTVYGDADVI-------------------PTPE----E--EPYK 132 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCSCSSS-------------------SBCT----T--SCCC
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeCcHHHhCCCCCC-------------------CCCC----C--CCCC
Confidence 567888999999999999988653 24699999998765432210 0000 0 0111
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------------C-------CCC
Q psy8786 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------------G-------NVN 375 (484)
Q Consensus 322 ~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------------~-------~~~ 375 (484)
+...|+.||++.+.+++.++.++ |++++.|+||.|.++..... . ...
T Consensus 133 p~~~Y~~sK~~~e~~~~~~~~~~-------g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 205 (312)
T 3ko8_A 133 PISVYGAAKAAGEVMCATYARLF-------GVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLY 205 (312)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEE
T ss_pred CCChHHHHHHHHHHHHHHHHHHh-------CCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEE
Confidence 34789999999999999988765 79999999999988753321 0 034
Q ss_pred HHhHHHHHHHHHhh-hccccccccc
Q psy8786 376 IFDDSSTFNAFERV-ISHFLIGQQI 399 (484)
Q Consensus 376 peevA~~~~~L~s~-~a~~itG~~i 399 (484)
++|+|+++++++.. ......|+.+
T Consensus 206 v~Dva~a~~~~~~~~~~~~~~~~~~ 230 (312)
T 3ko8_A 206 VRDAVEATLAAWKKFEEMDAPFLAL 230 (312)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCCcEE
Confidence 78899988887754 2223344444
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=139.80 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=106.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHH---------------------Hh--
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVL---------------------KD-- 233 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l---------------------~~-- 233 (484)
.+++++|+||||||+|+||++++++|+++ |++|++++|+.. .+++..+++ ..
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 100 (352)
T 1sb8_A 22 ELPAQPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC 100 (352)
T ss_dssp HHHHSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH
T ss_pred hcCccCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh
Confidence 34567899999999999999999999998 899999999653 222221111 00
Q ss_pred -c-------CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 234 -R-------ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 234 -~-------~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
. ..... ..++++..+++|+.++..+++++.+. ..++||++||...+......
T Consensus 101 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~SS~~~~~~~~~~--------------- 163 (352)
T 1sb8_A 101 AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA--KVQSFTYAASSSTYGDHPGL--------------- 163 (352)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEEGGGGTTCCCS---------------
T ss_pred cCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccHHhcCCCCCC---------------
Confidence 0 11111 12467788999999999999998763 24799999998764322110
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
.+.. . ....+...|+.||++.+.+++.++.++ |++++.|+||.|.++..
T Consensus 164 ----~~~E----~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------g~~~~ilRp~~v~G~~~ 212 (352)
T 1sb8_A 164 ----PKVE----D--TIGKPLSPYAVTKYVNELYADVFSRCY-------GFSTIGLRYFNVFGRRQ 212 (352)
T ss_dssp ----SBCT----T--CCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCCEEEEECCEECTTC
T ss_pred ----CCCC----C--CCCCCCChhHHHHHHHHHHHHHHHHHc-------CCCEEEEEECceeCcCC
Confidence 0000 0 001133789999999999999888764 79999999999987753
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-14 Score=141.49 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=120.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhc-CCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~-gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++|+||||||+|+||++++++|+++ |..+|++++|++++.++..+++...
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 368899999999999999999999997 4348999999987766554443211
Q ss_pred -CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 235 -ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 235 -~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
..... .....+..+++|+.|+.++++++.+. ..++||++||..+..
T Consensus 98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~--~v~~~V~~SS~~~~~---------------------------- 147 (344)
T 2gn4_A 98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKN--AISQVIALSTDKAAN---------------------------- 147 (344)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT--TCSEEEEECCGGGSS----------------------------
T ss_pred CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCCccCC----------------------------
Confidence 11111 12345678999999999999999874 247999999965421
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-----------C---C----C
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS-----------F---M----G 372 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~-----------~---~----~ 372 (484)
|...|++||++++.+++.++++++.. |+++++|+||.|.++... . . +
T Consensus 148 -----------p~~~Y~~sK~~~E~~~~~~~~~~~~~----g~~~~~vRpg~v~g~~~~~i~~~~~~~~~g~~~~~i~~~ 212 (344)
T 2gn4_A 148 -----------PINLYGATKLCSDKLFVSANNFKGSS----QTQFSVVRYGNVVGSRGSVVPFFKKLVQNKASEIPITDI 212 (344)
T ss_dssp -----------CCSHHHHHHHHHHHHHHHGGGCCCSS----CCEEEEECCCEETTCTTSHHHHHHHHHHHTCCCEEESCT
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHhCCC----CcEEEEEEeccEECCCCCHHHHHHHHHHcCCCceEEeCC
Confidence 12689999999999998887766544 899999999998875210 0 0 0
Q ss_pred -----CCCHHhHHHHHHHHHhh
Q psy8786 373 -----NVNIFDDSSTFNAFERV 389 (484)
Q Consensus 373 -----~~~peevA~~~~~L~s~ 389 (484)
...++|+++.+++++..
T Consensus 213 ~~~r~~i~v~D~a~~v~~~l~~ 234 (344)
T 2gn4_A 213 RMTRFWITLDEGVSFVLKSLKR 234 (344)
T ss_dssp TCEEEEECHHHHHHHHHHHHHH
T ss_pred CeEEeeEEHHHHHHHHHHHHhh
Confidence 15789999999888754
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=136.00 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=118.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCch-----hH-------------------HHHHHHHHhc-----
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKK-----KG-------------------AEAVQVLKDR----- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~-----~~-------------------~~~~~~l~~~----- 234 (484)
++++||||||+|+||++++++|+++| +++|++++|+.. .+ +...+.+...
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH 81 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence 34679999999999999999999984 378999887531 10 1111111111
Q ss_pred -CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 235 -ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 235 -~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
..... ..++++..+++|+.|+.++++++.+. ...++||++||.+.++..... .+..
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~~~~-------------------~~~E 141 (336)
T 2hun_A 82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVSTDEVYGDILKG-------------------SFTE 141 (336)
T ss_dssp CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCCCSSS-------------------CBCT
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEeccHHHHCCCCCC-------------------CcCC
Confidence 11111 12456788999999999999999886 324799999997654321100 0000
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------------
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------------- 371 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------------- 371 (484)
.. ...+...|+.||++.+.+++.++.++ |++++.|+||.|.++.....
T Consensus 142 ----~~--~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (336)
T 2hun_A 142 ----ND--RLMPSSPYSATKAASDMLVLGWTRTY-------NLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIY 208 (336)
T ss_dssp ----TB--CCCCCSHHHHHHHHHHHHHHHHHHHT-------TCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEE
T ss_pred ----CC--CCCCCCccHHHHHHHHHHHHHHHHHh-------CCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEe
Confidence 00 01123689999999999999888754 79999999999988764210
Q ss_pred C-------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 G-------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ~-------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ...++|+|+++++++... .+|+.+
T Consensus 209 ~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~ 240 (336)
T 2hun_A 209 GTGKNVRDWLYVEDHVRAIELVLLKG---ESREIY 240 (336)
T ss_dssp TC---CEEEEEHHHHHHHHHHHHHHC---CTTCEE
T ss_pred CCCCceeeeEEHHHHHHHHHHHHhCC---CCCCEE
Confidence 0 035788898888877542 356655
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=137.53 Aligned_cols=172 Identities=14% Similarity=0.061 Sum_probs=111.4
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHh--cCCCeEEEEecCchh----------------------------H--HHH
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCE--QFDGYIYLTARDKKK----------------------------G--AEA 227 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~--~gga~Vvl~~R~~~~----------------------------~--~~~ 227 (484)
|.+++++|+||||||+|+||++++++|++ + |++|++++|+... + .+.
T Consensus 4 ~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 82 (362)
T 3sxp_A 4 IDDELENQTILITGGAGFVGSNLAFHFQENHP-KAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLD 82 (362)
T ss_dssp SSCCCTTCEEEEETTTSHHHHHHHHHHHHHCT-TSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHH
T ss_pred cchhcCCCEEEEECCCCHHHHHHHHHHHhhCC-CCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHH
Confidence 34678999999999999999999999999 7 8999999985430 0 112
Q ss_pred HHHH-Hhc--------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcc
Q psy8786 228 VQVL-KDR--------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLR 298 (484)
Q Consensus 228 ~~~l-~~~--------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~ 298 (484)
.+++ ... +......++++..+++|+.|+.++++++.. .+++||++||.+.++.....
T Consensus 83 ~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~---~~~~~V~~SS~~vyg~~~~~----------- 148 (362)
T 3sxp_A 83 LRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARS---KKAKVIYASSAGVYGNTKAP----------- 148 (362)
T ss_dssp HHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHH---TTCEEEEEEEGGGGCSCCSS-----------
T ss_pred HHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHH---cCCcEEEeCcHHHhCCCCCC-----------
Confidence 2222 111 111112367788999999999999998854 25679999996554322110
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
... . ....|...|+.||++.+.+++.++.+ +++..|.|+.|..+.....
T Consensus 149 ---------~~E----~--~~~~p~~~Y~~sK~~~E~~~~~~~~~---------~~~~~lR~~~v~Gp~~~~~~~~~~~~ 204 (362)
T 3sxp_A 149 ---------NVV----G--KNESPENVYGFSKLCMDEFVLSHSND---------NVQVGLRYFNVYGPREFYKEKTASMV 204 (362)
T ss_dssp ---------BCT----T--SCCCCSSHHHHHHHHHHHHHHHTTTT---------SCEEEEEECSEESTTCGGGGGGSCHH
T ss_pred ---------CCC----C--CCCCCCChhHHHHHHHHHHHHHHhcc---------CCEEEEEeCceeCcCCCCCCcchhHH
Confidence 000 0 01123478999999999999876653 4445555555543321100
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhh
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~ 390 (484)
....++|+|+++++++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~ 246 (362)
T 3sxp_A 205 LQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQ 246 (362)
T ss_dssp HHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcC
Confidence 0145889999988887543
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=130.91 Aligned_cols=184 Identities=17% Similarity=0.116 Sum_probs=113.9
Q ss_pred CCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCch------------------------hHHHHHHHHH
Q psy8786 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKK------------------------KGAEAVQVLK 232 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~------------------------~~~~~~~~l~ 232 (484)
|+.+++++|+||||||+|+||++++++|+++ | ..|++.+|... +.+...+.+.
T Consensus 17 n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 95 (346)
T 4egb_A 17 NLYFQSNAMNILVTGGAGFIGSNFVHYMLQS-YETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIK 95 (346)
T ss_dssp -------CEEEEEETTTSHHHHHHHHHHHHH-CTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred ccccccCCCeEEEECCccHHHHHHHHHHHhh-CCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHh
Confidence 3345678899999999999999999999998 6 56777665420 1122222222
Q ss_pred h---c-----CC---CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 233 D---R-----AS---TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 233 ~---~-----~~---~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
. + .. .....++.+..+++|+.|+..+++++... ...++|++||...++......
T Consensus 96 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~--~~~~~v~~SS~~vy~~~~~~~------------- 160 (346)
T 4egb_A 96 ERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY--PHIKLVQVSTDEVYGSLGKTG------------- 160 (346)
T ss_dssp HHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS--TTSEEEEEEEGGGGCCCCSSC-------------
T ss_pred hcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEeCchHHhCCCCcCC-------------
Confidence 2 1 11 11123567788999999999999988664 236899999986654321100
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
.+... ....+...|+.||.+.+.+++.++.+. |++++.++||.|..+.....
T Consensus 161 -----~~~E~------~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 222 (346)
T 4egb_A 161 -----RFTEE------TPLAPNSPYSSSKASADMIALAYYKTY-------QLPVIVTRCSNNYGPYQYPEKLIPLMVTNA 222 (346)
T ss_dssp -----CBCTT------SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEESTTCCTTSHHHHHHHHH
T ss_pred -----CcCCC------CCCCCCChhHHHHHHHHHHHHHHHHHh-------CCCEEEEeecceeCcCCCccchHHHHHHHH
Confidence 00000 001133789999999999999888754 79999999999877643210
Q ss_pred ---------CC-------CCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ---------GN-------VNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ---------~~-------~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
.. ..++|+|+++.+++.... .|+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~ 263 (346)
T 4egb_A 223 LEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR---VGEVY 263 (346)
T ss_dssp HTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC---TTCEE
T ss_pred HcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC---CCCEE
Confidence 00 347889998888775433 55555
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=131.23 Aligned_cols=150 Identities=17% Similarity=0.071 Sum_probs=100.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh------------HHHHHHHHHhc-------CCCCccHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK------------GAEAVQVLKDR-------ASTVPFAI 242 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~------------~~~~~~~l~~~-------~~~~~~~~ 242 (484)
.++++|+||||||+|+||++++++|+++ |++|++++|+.+. .+...+.+... ........
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~ 93 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWAPA 93 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSSGG
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcchh
Confidence 4568899999999999999999999999 8999999987532 22222222221 11222334
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCC
Q psy8786 243 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322 (484)
Q Consensus 243 ~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
.++..+++|+.++..+++++... ..++||++||...++..... ...+.. . ....+
T Consensus 94 ~~~~~~~~nv~~~~~ll~a~~~~--~~~~~V~~SS~~vyg~~~~~-----------------~~~~~E----~--~~~~~ 148 (347)
T 4id9_A 94 DRDRMFAVNVEGTRRLLDAASAA--GVRRFVFASSGEVYPENRPE-----------------FLPVTE----D--HPLCP 148 (347)
T ss_dssp GHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEEGGGTTTTSCS-----------------SSSBCT----T--SCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEECCHHHhCCCCCC-----------------CCCcCC----C--CCCCC
Confidence 55889999999999999988652 23699999997665431000 000000 0 01113
Q ss_pred ChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 323 ~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
...|+.||.+.+.+++.++.+. |++++.|+||.|.
T Consensus 149 ~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilRp~~v~ 183 (347)
T 4id9_A 149 NSPYGLTKLLGEELVRFHQRSG-------AMETVILRFSHTQ 183 (347)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHS-------SSEEEEEEECEEE
T ss_pred CChHHHHHHHHHHHHHHHHHhc-------CCceEEEccceEe
Confidence 3789999999999998887653 7999999999887
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=129.34 Aligned_cols=187 Identities=14% Similarity=0.076 Sum_probs=117.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCch-----h------------------HHHHHHHHHhc------CC
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKK-----K------------------GAEAVQVLKDR------AS 236 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~-----~------------------~~~~~~~l~~~------~~ 236 (484)
|+||||||+|+||++++++|++++ |++|++++|+.. . .+...+.+... ..
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 84 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA 84 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence 689999999999999999999984 578999988531 1 01111112111 11
Q ss_pred CCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCC
Q psy8786 237 TVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313 (484)
Q Consensus 237 ~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (484)
... ..++++..+++|+.|+.++++++.+. +++||++||...++........ ...... ....+..
T Consensus 85 ~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---~~~~v~~SS~~vyg~~~~~~~~----~~~~~~---~~~~~~E--- 151 (348)
T 1oc2_A 85 ESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY---DIRFHHVSTDEVYGDLPLREDL----PGHGEG---PGEKFTA--- 151 (348)
T ss_dssp CCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH---TCEEEEEEEGGGGCCBCCGGGS----TTTTCS---TTSSBCT---
T ss_pred ccCccchhhCHHHHHHHHHHHHHHHHHHHHHh---CCeEEEecccceeCCCcccccc----cccccc---cCCCcCC---
Confidence 111 12456788999999999999999875 3599999998654321100000 000000 0000000
Q ss_pred cccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------------------
Q psy8786 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------------------- 371 (484)
Q Consensus 314 ~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------------------- 371 (484)
. ....+...|+.||++.+.+++.++.++ |++++.|+||.|.++.....
T Consensus 152 -~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (348)
T 1oc2_A 152 -E--TNYNPSSPYSSTKAASDLIVKAWVRSF-------GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEG 221 (348)
T ss_dssp -T--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTS
T ss_pred -C--CCCCCCCccHHHHHHHHHHHHHHHHHh-------CCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCC
Confidence 0 001133789999999999999888764 79999999999987754210
Q ss_pred ----CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ----GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ----~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
....++|+|+++++++... .+|+.+
T Consensus 222 ~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~ 250 (348)
T 1oc2_A 222 KNVRDWIHTNDHSTGVWAILTKG---RMGETY 250 (348)
T ss_dssp CCEEECEEHHHHHHHHHHHHHHC---CTTCEE
T ss_pred CceEeeEEHHHHHHHHHHHhhCC---CCCCeE
Confidence 0145788999888877542 356655
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=134.58 Aligned_cols=178 Identities=17% Similarity=0.100 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH------------------------HHHHHHHh---c---
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA------------------------EAVQVLKD---R--- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~------------------------~~~~~l~~---~--- 234 (484)
++|+||||||+|+||++++++|+++ |++|++++|+.+..+ ...+.+.. +
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 5789999999999999999999998 899999999754321 11111111 1
Q ss_pred -CCCCcc----HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -ASTVPF----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -~~~~~~----~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
...... .++++..+++|+.|++++++++... ...++||++||.+.++..... .+.
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~~~~-------------------~~~ 140 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSEMFGKVQEI-------------------PQT 140 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGGGGCSCSSS-------------------SBC
T ss_pred ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechhhcCCCCCC-------------------CCC
Confidence 111111 2457788999999999999998853 223799999998754322110 000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-----------C------C-
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS-----------F------M- 371 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~-----------~------~- 371 (484)
. . ....+...|+.||++.+.+++.++.+++-.+ ..++.+|.+.||.+.|.+.. . .
T Consensus 141 e----~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~-~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (345)
T 2z1m_A 141 E----K--TPFYPRSPYAVAKLFGHWITVNYREAYNMFA-CSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLG 213 (345)
T ss_dssp T----T--SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCE-EEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEES
T ss_pred c----c--CCCCCCChhHHHHHHHHHHHHHHHHHhCCce-EeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeC
Confidence 0 0 0011237899999999999999998875110 11577889999988775411 0 0
Q ss_pred ------CCCCHHhHHHHHHHHHhhh
Q psy8786 372 ------GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 372 ------~~~~peevA~~~~~L~s~~ 390 (484)
....++|+|+++.++++..
T Consensus 214 ~~~~~~~~~~v~Dva~a~~~~~~~~ 238 (345)
T 2z1m_A 214 NLNAKRDWGYAPEYVEAMWLMMQQP 238 (345)
T ss_dssp CTTCEECCEEHHHHHHHHHHHHTSS
T ss_pred CCCceeeeEEHHHHHHHHHHHHhCC
Confidence 1257899999999888643
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-13 Score=135.81 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=120.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-----h-------------------HHHHHHHHHh-c-------C
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-----K-------------------GAEAVQVLKD-R-------A 235 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-----~-------------------~~~~~~~l~~-~-------~ 235 (484)
+||||||+|+||++++++|++++|++|++++|+.. . .+...+.+.. . .
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLA 81 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 49999999999999999999975679999887531 0 1111222221 1 1
Q ss_pred CCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------CCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 236 STVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRR-------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 236 ~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~-------~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
.... ..++++..+++|+.|++++++++.+.|+. +++||++||.+.++........ .......
T Consensus 82 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~-------~~~~~~~- 153 (361)
T 1kew_A 82 AESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEV-------ENSVTLP- 153 (361)
T ss_dssp SCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGS-------CTTSCCC-
T ss_pred CCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccc-------cccccCC-
Confidence 1111 22456788999999999999999998643 2599999997654321100000 0000000
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------- 371 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------- 371 (484)
.+... . ...+...|+.||++.+.+++.++.++ |+++++|+||.|.++.....
T Consensus 154 -~~~E~----~--~~~~~~~Y~~sK~~~e~~~~~~~~~~-------gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~ 219 (361)
T 1kew_A 154 -LFTET----T--AYAPSSPYSASKASSDHLVRAWRRTY-------GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGK 219 (361)
T ss_dssp -CBCTT----S--CCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTC
T ss_pred -CCCCC----C--CCCCCCccHHHHHHHHHHHHHHHHHh-------CCcEEEEeeceeECCCCCcccHHHHHHHHHHcCC
Confidence 00000 0 01123789999999999999988764 79999999999988864210
Q ss_pred -----C-------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 -----G-------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 -----~-------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ...++|+|++++++++.. .+|+.+
T Consensus 220 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~ 256 (361)
T 1kew_A 220 PLPIYGKGDQIRDWLYVEDHARALHMVVTEG---KAGETY 256 (361)
T ss_dssp CEEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEE
T ss_pred CceEcCCCceeEeeEEHHHHHHHHHHHHhCC---CCCCEE
Confidence 0 045889999998887543 367666
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.9e-13 Score=130.97 Aligned_cols=167 Identities=20% Similarity=0.099 Sum_probs=108.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH----------------HHHHHHHhc-------C--CCCccH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA----------------EAVQVLKDR-------A--STVPFA 241 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~----------------~~~~~l~~~-------~--~~~~~~ 241 (484)
|+||||||+|+||++++++|+++ |..|++..|+....+ ...+.+... . ......
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~~~~~~~ 80 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSES-NEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKDYLKGAEEVWHIAANPDVRIGA 80 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTT-SCEEEECCCSSCCGGGSCTTEEEECCCTTTSCCHHHHTTCSEEEECCCCCCCC-CC
T ss_pred CEEEEECCCchHHHHHHHHHHhC-CCEEEEEcCCCCChhhcCCCcEEEECcCChHHHHHHhcCCCEEEECCCCCChhhhh
Confidence 46999999999999999999998 654555444322111 111111111 1 112233
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 242 ~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
++++..+++|+.|++++++++... ..++||++||...++..... .... .....
T Consensus 81 ~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~vyg~~~~~-------------------~~~E------~~~~~ 133 (313)
T 3ehe_A 81 ENPDEIYRNNVLATYRLLEAMRKA--GVSRIVFTSTSTVYGEAKVI-------------------PTPE------DYPTH 133 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEECCGGGGCSCSSS-------------------SBCT------TSCCC
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEeCchHHhCcCCCC-------------------CCCC------CCCCC
Confidence 567889999999999999986542 24699999998765432110 0000 00111
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------------------CCCC
Q psy8786 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------------------------GNVN 375 (484)
Q Consensus 322 ~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------------------------~~~~ 375 (484)
+...|+.||++.+.+++.++.++ |++++.++||.|..+..... ....
T Consensus 134 ~~~~Y~~sK~~~e~~~~~~~~~~-------g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 206 (313)
T 3ehe_A 134 PISLYGASKLACEALIESYCHTF-------DMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIY 206 (313)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHT-------TCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc-------CCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEE
Confidence 34789999999999999888764 79999999999977632210 0145
Q ss_pred HHhHHHHHHHHHh
Q psy8786 376 IFDDSSTFNAFER 388 (484)
Q Consensus 376 peevA~~~~~L~s 388 (484)
.+|+|+++++++.
T Consensus 207 v~Dva~a~~~~~~ 219 (313)
T 3ehe_A 207 ISDCVDAMLFGLR 219 (313)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 6788888887775
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=130.42 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=99.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh---------c--------------CCCC
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---------R--------------ASTV 238 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~---------~--------------~~~~ 238 (484)
.++++|+||||||+|+||++++++|+++ |++|++++|+.....+..+.+.. + ....
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~ 101 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASP 101 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSC
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHC-CCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccc
Confidence 3467899999999999999999999998 89999999864321111111100 0 0000
Q ss_pred cc----HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCc
Q psy8786 239 PF----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314 (484)
Q Consensus 239 ~~----~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (484)
.. ..+.+..+++|+.++.++++++... +.++|++||...++..... . +......
T Consensus 102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~v~~SS~~v~g~~~~~------------~-------~~E~~~~ 159 (343)
T 2b69_A 102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV---GARLLLASTSEVYGDPEVH------------P-------QSEDYWG 159 (343)
T ss_dssp CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGGBSCSSS------------S-------BCTTCCC
T ss_pred cCchhhhhCHHHHHHHHHHHHHHHHHHHHHh---CCcEEEECcHHHhCCCCCC------------C-------Ccccccc
Confidence 11 1245678899999999999988753 3599999997654322100 0 0000000
Q ss_pred ccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 315 ~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
......+...|+.||++.+.+++.++.+. |++++.++||.|..+.
T Consensus 160 -~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilrp~~v~G~~ 204 (343)
T 2b69_A 160 -HVNPIGPRACYDEGKRVAETMCYAYMKQE-------GVEVRVARIFNTFGPR 204 (343)
T ss_dssp -BCCSSSTTHHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECCEECTT
T ss_pred -cCCCCCCCCchHHHHHHHHHHHHHHHHHh-------CCcEEEEEEcceeCcC
Confidence 00011123789999999999999887653 7999999999998764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-12 Score=125.54 Aligned_cols=145 Identities=15% Similarity=0.094 Sum_probs=98.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch------------------hHHHHHHHHHh---c-----CCCCc--
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK------------------KGAEAVQVLKD---R-----ASTVP-- 239 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~------------------~~~~~~~~l~~---~-----~~~~~-- 239 (484)
++|||||+|+||++++++|+++ |++|++++|..+ +.+...+.+.. + .....
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~ 80 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVK 80 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTT-TCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCch
Confidence 5999999999999999999998 899999888321 11112222221 1 11111
Q ss_pred -cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-ccc-ccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 240 -FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLS-QITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 240 -~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
..++++..+++|+.|++++++++... ..++||++||.++ ++. .... .... .
T Consensus 81 ~~~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iv~~SS~~~~~g~~~~~~-------------------~~~E----~- 134 (311)
T 2p5y_A 81 VSVEDPVLDFEVNLLGGLNLLEACRQY--GVEKLVFASTGGAIYGEVPEGE-------------------RAEE----T- 134 (311)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEEHHHHHCCCCTTC-------------------CBCT----T-
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEeCCChhhcCCCCCCC-------------------CcCC----C-
Confidence 22567788999999999999988642 2369999999732 322 1000 0000 0
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
....+...|+.||++++.+++.++.++ |++++.|+||.|.++.
T Consensus 135 -~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~lrp~~v~Gp~ 177 (311)
T 2p5y_A 135 -WPPRPKSPYAASKAAFEHYLSVYGQSY-------GLKWVSLRYGNVYGPR 177 (311)
T ss_dssp -SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEECTT
T ss_pred -CCCCCCChHHHHHHHHHHHHHHHHHHc-------CCCEEEEeeccccCcC
Confidence 001123689999999999999888764 7999999999998775
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=125.71 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=103.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH------------------HHHHHHHHhc------CCCCc
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG------------------AEAVQVLKDR------ASTVP 239 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~------------------~~~~~~l~~~------~~~~~ 239 (484)
.++|+||||||+|+||++++++|+++ |++|++++|+.+.. +...+.+... .....
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~ 105 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMG 105 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCC
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECceecC
Confidence 35689999999999999999999998 89999999874321 1122222211 11111
Q ss_pred c----HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcc
Q psy8786 240 F----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA 315 (484)
Q Consensus 240 ~----~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (484)
. .++++..+++|+.++.++++++... ..++||++||...+....... .... .+.. .
T Consensus 106 ~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~--~~~~~V~~SS~~v~~~~~~~~---------~~~~-----~~~E----~ 165 (379)
T 2c5a_A 106 GMGFIQSNHSVIMYNNTMISFNMIEAARIN--GIKRFFYASSACIYPEFKQLE---------TTNV-----SLKE----S 165 (379)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCSEEEEEEEGGGSCGGGSSS---------SSSC-----EECG----G
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEeehheeCCCCCCC---------ccCC-----CcCc----c
Confidence 1 3457788999999999999988653 236999999976543221000 0000 0000 0
Q ss_pred cccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 316 HVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 316 ~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
......+...|+.||++.+.+++.++.+. |++++.|+||.|.++.
T Consensus 166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilrp~~v~G~~ 210 (379)
T 2c5a_A 166 DAWPAEPQDAFGLEKLATEELCKHYNKDF-------GIECRIGRFHNIYGPF 210 (379)
T ss_dssp GGSSBCCSSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEECTT
T ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHH-------CCCEEEEEeCceeCcC
Confidence 00001123789999999999999887653 7999999999998774
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=137.24 Aligned_cols=154 Identities=16% Similarity=0.052 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-----------------------HHHHHHHh---c---
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-----------------------EAVQVLKD---R--- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-----------------------~~~~~l~~---~--- 234 (484)
+++|+||||||+|+||++++++|+++ |++|++++|+.++.+ ...+.+.. +
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 85 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 85 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhC-CCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998 899999998753211 11112221 1
Q ss_pred -CCCCc----cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -ASTVP----FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -~~~~~----~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
..... ..++++..+++|+.|+..+++++.+. ...++||++||...++...... ...
T Consensus 86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~vyg~~~~~~------------------~~~ 146 (357)
T 1rkx_A 86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNITSDKCYDNKEWIW------------------GYR 146 (357)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEECCGGGBCCCCSSS------------------CBC
T ss_pred ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEecCHHHhCCCCcCC------------------CCC
Confidence 11111 13556788999999999999998763 2247999999987643221000 000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhh------hhcCCCCeEEEEEeCCcccCCC
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD------CELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela------~~~~~~gIrVNaV~PG~V~T~m 367 (484)
... ...+...|+.||++.+.+++.++.++. .. |+++++|+||.|.++.
T Consensus 147 ----E~~--~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~----gi~~~~lrp~~v~G~~ 200 (357)
T 1rkx_A 147 ----ENE--AMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH----GTAVATVRAGNVIGGG 200 (357)
T ss_dssp ----TTS--CBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHH----CCEEEEEECCCEECTT
T ss_pred ----CCC--CCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccC----CceEEEEeeceeeCCC
Confidence 000 011237899999999999999998874 44 8999999999998874
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=131.71 Aligned_cols=169 Identities=20% Similarity=0.096 Sum_probs=114.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh---------------HHHHHHHHHhc-----CCCCccHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK---------------GAEAVQVLKDR-----ASTVPFAIQAEK 246 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~---------------~~~~~~~l~~~-----~~~~~~~~~~~~ 246 (484)
|++|||||+|+||++++++|+++ |++|++++|+.++ .+...+.+... .......+.++.
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~ 81 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTL-AHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVSVERPWND 81 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGT-EEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCCSCCCHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhC-CCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcCCCCCCHHH
Confidence 68999999999999999999998 7899999987531 11222222221 111112345678
Q ss_pred HHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhh
Q psy8786 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAY 326 (484)
Q Consensus 247 ~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (484)
.+++|+.++.++++++.+. ..++||++||...+....... .+... ....+...|
T Consensus 82 ~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~~~~~~~~~~~------------------~~~E~------~~~~~~~~Y 135 (267)
T 3ay3_A 82 ILQANIIGAYNLYEAARNL--GKPRIVFASSNHTIGYYPRTT------------------RIDTE------VPRRPDSLY 135 (267)
T ss_dssp HHHHTHHHHHHHHHHHHHT--TCCEEEEEEEGGGSTTSBTTS------------------CBCTT------SCCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCEEEEeCCHHHhCCCCCCC------------------CCCCC------CCCCCCChH
Confidence 8999999999999988752 247999999987643211000 00000 001123789
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cCCCccC--CCCCCHHhHHHHHHHHHhh
Q psy8786 327 AVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-ATNMSSF--MGNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 327 ~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T~m~~~--~~~~~peevA~~~~~L~s~ 389 (484)
+.||++++.+++.++.+ . ||++++|+||.+ .++.... .....++|+|+.+..++..
T Consensus 136 ~~sK~~~e~~~~~~~~~---~----gi~~~~lrp~~v~~~~~~~~~~~~~~~~~dva~~~~~~~~~ 194 (267)
T 3ay3_A 136 GLSKCFGEDLASLYYHK---F----DIETLNIRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVA 194 (267)
T ss_dssp HHHHHHHHHHHHHHHHT---T----CCCEEEEEECBCSSSCCSHHHHHHBCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH---c----CCCEEEEeceeecCCCCCCCeeeccccHHHHHHHHHHHHhC
Confidence 99999999999877542 3 899999999998 5553211 1237899999998887754
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=130.61 Aligned_cols=180 Identities=18% Similarity=0.052 Sum_probs=110.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH--HHH----h------c-----------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ--VLK----D------R----------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~--~l~----~------~----------------- 234 (484)
+++|+||||||+|+||++++++|+++ |++|++++|+.+..++... ++. . +
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 81 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV 81 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence 36799999999999999999999998 8999999998663321111 000 0 0
Q ss_pred ---CCCCc--cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccccccc
Q psy8786 235 ---ASTVP--FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 235 ---~~~~~--~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
..... ..+..+..+++|+.|+.++++++.+.. ..++||++||.++. ..+...... .+.
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~riV~~SS~~~~~~~~~~~~~~-------~E~-------- 145 (337)
T 2c29_D 82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAK-TVRRLVFTSSAGTVNIQEHQLPVY-------DES-------- 145 (337)
T ss_dssp EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHS-CCCEEEEECCGGGTSCSSSCCSEE-------CTT--------
T ss_pred EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CccEEEEeeeHhhcccCCCCCccc-------Ccc--------
Confidence 10001 112334678999999999999988753 14799999998753 211100000 000
Q ss_pred ccCCCccc-ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---------------
Q psy8786 309 TKEHPRAH-VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--------------- 372 (484)
Q Consensus 309 ~~~~~~~~-~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--------------- 372 (484)
....... .....+...|+.||++.+.+++.++++ . ||++++|+||.|.++......
T Consensus 146 -~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~----gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 217 (337)
T 2c29_D 146 -CWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE---N----NIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNE 217 (337)
T ss_dssp -CCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---H----TCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCG
T ss_pred -cCCchhhhcccCCccchHHHHHHHHHHHHHHHHHH---c----CCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCC
Confidence 0000000 000001257999999999888766543 3 899999999999888643210
Q ss_pred ----------CCCHHhHHHHHHHHHh
Q psy8786 373 ----------NVNIFDDSSTFNAFER 388 (484)
Q Consensus 373 ----------~~~peevA~~~~~L~s 388 (484)
...++|+|+++++++.
T Consensus 218 ~~~~~~~~~~~i~v~Dva~a~~~~~~ 243 (337)
T 2c29_D 218 AHYSIIRQGQFVHLDDLCNAHIYLFE 243 (337)
T ss_dssp GGHHHHTEEEEEEHHHHHHHHHHHHH
T ss_pred ccccccCCCCEEEHHHHHHHHHHHhc
Confidence 1467778888777764
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=130.13 Aligned_cols=149 Identities=16% Similarity=0.089 Sum_probs=99.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhH----------------HHHHHHHHh-----c------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKG----------------AEAVQVLKD-----R------ 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~----------------~~~~~~l~~-----~------ 234 (484)
++++|+||||||+|+||++++++|+++ | +.|++++|+.+.. .+..+.+.+ .
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih 121 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFH 121 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHT-TCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHC-CCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEE
Confidence 357789999999999999999999998 7 8899998864321 122222221 1
Q ss_pred --CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCC
Q psy8786 235 --ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEH 312 (484)
Q Consensus 235 --~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (484)
.......++++..+++|+.++.++++++.+. .. +||++||...+....... +.
T Consensus 122 ~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~--~~-r~V~~SS~~v~g~~~~~~-------------------~~--- 176 (357)
T 2x6t_A 122 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLER--EI-PFLYASSAATYGGRTSDF-------------------IE--- 176 (357)
T ss_dssp CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH--TC-CEEEEEEGGGGCSCSSCC-------------------CS---
T ss_pred CCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc--CC-eEEEEcchHHhCCCCCCC-------------------cC---
Confidence 1111123457788999999999999998873 23 999999987643221100 00
Q ss_pred CcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 313 PRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 313 ~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
... ...+...|+.||++.+.+++.++.+ . |++++.|+||.|.++.
T Consensus 177 -E~~--~~~p~~~Y~~sK~~~E~~~~~~~~~---~----g~~~~ilRp~~v~Gp~ 221 (357)
T 2x6t_A 177 -SRE--YEKPLNVFGYSKFLFDEYVRQILPE---A----NSQIVGFRYFNVYGPR 221 (357)
T ss_dssp -SGG--GCCCSSHHHHHHHHHHHHHHHHGGG---C----SSCEEEEEECEEESSS
T ss_pred -CcC--CCCCCChhHHHHHHHHHHHHHHHHH---c----CCCEEEEecCeEECCC
Confidence 000 0112368999999999999877653 2 7999999999997664
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=130.32 Aligned_cols=89 Identities=9% Similarity=-0.099 Sum_probs=71.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 243 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 243 ~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
.....+....+..+...+...+.|.++++++.+|+... ...|.+.
T Consensus 200 ~T~~vMg~s~~s~w~~al~~a~lla~G~siva~SYiGse~t~P~Y~---------------------------------- 245 (401)
T 4ggo_A 200 ATVKVMGGEDWERWIKQLSKEGLLEEGCITLAYSYIGPEATQALYR---------------------------------- 245 (401)
T ss_dssp HHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGHHHHT----------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcccCCceEEEEeccCcceeecCCC----------------------------------
Confidence 33445556677778888888889999999999999887 4444321
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 322 ~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
...++++|++|+..++.|+.+|+ ++++|++++|.+.|.-....+
T Consensus 246 -~G~mG~AKaaLEa~~r~La~eL~------~~~a~v~v~~a~vT~AssaIP 289 (401)
T 4ggo_A 246 -KGTIGKAKEHLEATAHRLNKENP------SIRAFVSVNKGLVTRASAVIP 289 (401)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHHCT------TEEEEEEECCCCCCTTGGGSS
T ss_pred -ccHHHHHHHHHHHHHHHHHHhcC------CCcEEEEEcCccccchhhcCC
Confidence 15789999999999999999985 589999999999999877665
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-12 Score=125.79 Aligned_cols=151 Identities=15% Similarity=0.061 Sum_probs=104.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh----------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD---------------------------- 233 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~---------------------------- 233 (484)
+.+++|+||||||+|+||++++++|+++ |++|++++|+.....+..+.+..
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKL-NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 3457899999999999999999999998 89999999965432222222110
Q ss_pred c-------CCCC---ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 234 R-------ASTV---PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 234 ~-------~~~~---~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
. .... ...++.+..+++|+.++..+++++... .-.++|++||...++.....
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~--~~~~~v~~SS~~vyg~~~~~---------------- 161 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA--QVQSFTYAASSSTYGDHPAL---------------- 161 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEEGGGGTTCCCS----------------
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEecHHhcCCCCCC----------------
Confidence 0 1110 112456678899999999999988653 23699999998765322110
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.+... ....+...|+.||.+.+.+++.++.+. |++++.++||.|..+.
T Consensus 162 ---~~~E~------~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------g~~~~ilRp~~v~G~~ 209 (351)
T 3ruf_A 162 ---PKVEE------NIGNPLSPYAVTKYVNEIYAQVYARTY-------GFKTIGLRYFNVFGRR 209 (351)
T ss_dssp ---SBCTT------CCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCCEEEEECSEESTT
T ss_pred ---CCccC------CCCCCCChhHHHHHHHHHHHHHHHHHh-------CCCEEEEeeCceeCcC
Confidence 00000 001133789999999999999888764 7999999999987664
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=133.46 Aligned_cols=185 Identities=15% Similarity=0.054 Sum_probs=119.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh---HHHHHHHHHh------------c-------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK---GAEAVQVLKD------------R------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~---~~~~~~~l~~------------~------------- 234 (484)
...+|+||||||+|+||++++++|+++ |++|++++|+.+. .+...+.+.. .
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGY-SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTT-EEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcC-CCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 456789999999999999999999887 8899999999772 2222222110 0
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
.........++..+++|+.|+.++++++.+ ...++|++||... +...... .
T Consensus 145 l~~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~---~~~~~v~~SS~~~-G~~~~~~------------~ 208 (427)
T 4f6c_A 145 VVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ---HHARLIYVSTISV-GTYFDID------------T 208 (427)
T ss_dssp CCCSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH---TTCEEEEEEEGGG-GSEECSS------------C
T ss_pred CCCcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh---cCCcEEEECchHh-CCCccCC------------C
Confidence 011112367788999999999999999887 4579999999876 2211000 0
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
....+..... .....+...|+.||++.+.+++.++. . |+++++|+||.|.++.....
T Consensus 209 --~~~~~~E~~~---~~~~~~~~~Y~~sK~~~E~~~~~~~~----~----g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~ 275 (427)
T 4f6c_A 209 --EDVTFSEADV---YKGQLLTSPYTRSKFYSELKVLEAVN----N----GLDGRIVRVGNLTSPYNGRWHMRNIKTNRF 275 (427)
T ss_dssp --SCCEECTTCS---CSSCCCCSHHHHHHHHHHHHHHHHHH----T----TCCEEEEEECCEESCSSSCCCCTTGGGCHH
T ss_pred --CCcccccccc---ccCCCCCCchHHHHHHHHHHHHHHHH----c----CCCEEEEeCCeeecCCCCCccccCcchHHH
Confidence 0000000000 00011347899999999999987553 4 89999999999987754321
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
.....+|+|+++++++.... .|+.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~---~g~~~~ 323 (427)
T 4f6c_A 276 SMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYH 323 (427)
T ss_dssp HHHHHHHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC---CCSEEE
T ss_pred HHHHHHHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC---CCCEEE
Confidence 01456889999988875543 556553
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=123.53 Aligned_cols=170 Identities=11% Similarity=-0.037 Sum_probs=113.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchhHHHH-----------------HHHHHhc-------CCCC
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKKGAEA-----------------VQVLKDR-------ASTV 238 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~~~~~-----------------~~~l~~~-------~~~~ 238 (484)
+++|+++||||+|+||++++++|++++ |++|++++|+.++.++. .+.+... +...
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~ 81 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVP 81 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCCC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccccc
Confidence 357899999999999999999999985 67999999986554321 1111111 1000
Q ss_pred ---------------ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 239 ---------------PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 239 ---------------~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
...+.++..+++|+.++..+++++... ..++||++||..+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~SS~~~~~~~~~~---------------- 143 (253)
T 1xq6_A 82 KMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA--GVKHIVVVGSMGGTNPDHPL---------------- 143 (253)
T ss_dssp EECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH--TCSEEEEEEETTTTCTTCGG----------------
T ss_pred cccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc--CCCEEEEEcCccCCCCCCcc----------------
Confidence 011233456789999999999887653 24799999998763211100
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------------
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------ 371 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------ 371 (484)
..+....|+.+|++++.+++. . ||++++|+||.+.++.....
T Consensus 144 ---------------~~~~~~~y~~sK~~~e~~~~~-------~----~i~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~ 197 (253)
T 1xq6_A 144 ---------------NKLGNGNILVWKRKAEQYLAD-------S----GTPYTIIRAGGLLDKEGGVRELLVGKDDELLQ 197 (253)
T ss_dssp ---------------GGGGGCCHHHHHHHHHHHHHT-------S----SSCEEEEEECEEECSCSSSSCEEEESTTGGGG
T ss_pred ---------------ccccchhHHHHHHHHHHHHHh-------C----CCceEEEecceeecCCcchhhhhccCCcCCcC
Confidence 000013588899999987742 3 89999999999988753211
Q ss_pred ---CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 ---GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ---~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
....++|+|+.+++++.... ..|+.+
T Consensus 198 ~~~~~~~~~Dva~~~~~~~~~~~--~~g~~~ 226 (253)
T 1xq6_A 198 TDTKTVPRADVAEVCIQALLFEE--AKNKAF 226 (253)
T ss_dssp SSCCEEEHHHHHHHHHHHTTCGG--GTTEEE
T ss_pred CCCcEEcHHHHHHHHHHHHcCcc--ccCCEE
Confidence 12578899999988875432 245554
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=129.48 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=101.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHH-HHhcCCCCccHHHHHHHHH-----hhh---HH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQV-LKDRASTVPFAIQAEKTIL-----TNY---LG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~-----vN~---~g 254 (484)
..|+||||||+||||++++++|+++ | ++|++++|+++++++.... +.-........+.++..++ +|. ..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~-G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~ 100 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADK-QTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED 100 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC-TTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhC-CCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence 3489999999999999999999999 7 7999999987654321100 0000001111222332222 111 11
Q ss_pred HHHHHHHHHHhhhcC--CEEEEEeCCCccccccc-hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHH
Q psy8786 255 LVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQIT-NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKI 331 (484)
Q Consensus 255 ~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKa 331 (484)
....++.+++.+++. ++||++||...+..... ...+.+.. ...+...|..+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~ 156 (236)
T 3qvo_A 101 LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAV------------------------IGEPLKPFRRAAD 156 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCCCC----------------------------------------CGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhc------------------------ccchHHHHHHHHH
Confidence 234566777777653 69999999887432211 00000000 0001134555443
Q ss_pred HHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------CCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 332 GVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----------GNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 332 Al~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
.+ ... ||++|+|+||++.|+..... ...+++|+|+.+++++++.+.++ |+.+
T Consensus 157 ~l-----------~~~----gi~~~~vrPg~i~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~~~-g~~~ 219 (236)
T 3qvo_A 157 AI-----------EAS----GLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHI-GENI 219 (236)
T ss_dssp HH-----------HTS----CSEEEEEEECEEECCSCCCCEEECTTSCCSCSEEEHHHHHHHHHHHHHSTTTTT-TEEE
T ss_pred HH-----------HHC----CCCEEEEeCCcccCCCCcceEEeccCCCCCCcEECHHHHHHHHHHHHcCccccc-CeeE
Confidence 22 233 89999999999988754321 11689999999999998877665 6665
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=129.57 Aligned_cols=177 Identities=16% Similarity=0.034 Sum_probs=106.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-Cchh---HHHHH-----------------------HHHHhc----
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-DKKK---GAEAV-----------------------QVLKDR---- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R-~~~~---~~~~~-----------------------~~l~~~---- 234 (484)
||+||||||+|+||++++++|+++ |++|++++| +.+. ..... +.+...
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLEN-GYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHC-CCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 588999999999999999999998 899999888 5421 11100 000000
Q ss_pred --CCCCc-cHHH-HHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccc
Q psy8786 235 --ASTVP-FAIQ-AEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 --~~~~~-~~~~-~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
..... ..++ ++..+++|+.|++++++++.+.. ..++||++||.++. ..+.... .+.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~-~~~~iV~~SS~~~~~~~~~~~~------------------~~~ 140 (322)
T 2p4h_X 80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSK-TVKRFIYTSSGSAVSFNGKDKD------------------VLD 140 (322)
T ss_dssp ECCCCC--------CHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEEEGGGTSCSSSCCS------------------EEC
T ss_pred EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeccHHHcccCCCCCe------------------ecC
Confidence 11111 1112 34588999999999999987652 24799999998753 2111000 000
Q ss_pred cCCCccccc--CCCCC-hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---------------
Q psy8786 310 KEHPRAHVA--KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------------- 371 (484)
Q Consensus 310 ~~~~~~~~~--~~~~~-~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------------- 371 (484)
........+ ...+. ..|+.||++.+.+++.++.+ . ||++++|+||.|.+++....
T Consensus 141 e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~----gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~ 213 (322)
T 2p4h_X 141 ESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ---N----GIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGK 213 (322)
T ss_dssp TTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---T----TCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSC
T ss_pred CccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh---c----CCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCC
Confidence 000000000 00001 26999999877766544432 3 89999999999988864210
Q ss_pred ---------CCCCHHhHHHHHHHHHhh
Q psy8786 372 ---------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~ 389 (484)
....++|+|+++++++..
T Consensus 214 ~~~~~~~~~~~i~v~Dva~a~~~~~~~ 240 (322)
T 2p4h_X 214 KEQIGVTRFHMVHVDDVARAHIYLLEN 240 (322)
T ss_dssp GGGCCEEEEEEEEHHHHHHHHHHHHHS
T ss_pred CccCcCCCcCEEEHHHHHHHHHHHhhC
Confidence 024678888888887743
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=131.43 Aligned_cols=177 Identities=13% Similarity=0.043 Sum_probs=115.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh--------------------HHHHHHHHH--hc-----
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--------------------GAEAVQVLK--DR----- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~--------------------~~~~~~~l~--~~----- 234 (484)
.++++|+||||||+|+||++++++|+++ |++|++++|+.+. .+...+.+. ..
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih 94 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH 94 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence 4578999999999999999999999999 8999999985321 111222222 11
Q ss_pred -CC-CCc-cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 -AS-TVP-FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 -~~-~~~-~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
.. ... ..++++ +++|+.+++++++++... ..++||++||.+.+....... . .+..
T Consensus 95 ~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~--~~~~iV~~SS~~~~~~~~~~~------------~-----~~~E- 152 (330)
T 2pzm_A 95 SAAAYKDPDDWAED--AATNVQGSINVAKAASKA--GVKRLLNFQTALCYGRPATVP------------I-----PIDS- 152 (330)
T ss_dssp CCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHH--TCSEEEEEEEGGGGCSCSSSS------------B-----CTTC-
T ss_pred CCccCCCccccChh--HHHHHHHHHHHHHHHHHc--CCCEEEEecCHHHhCCCccCC------------C-----CcCC-
Confidence 11 111 234555 899999999999998752 347999999987653221000 0 0000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeE-EEEEeCCcccCCCcc-----------------CCCC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMSS-----------------FMGN 373 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIr-VNaV~PG~V~T~m~~-----------------~~~~ 373 (484)
.. .+...|+.||++++.+++.+ ++... .|| +|.+.||. .|++.. ....
T Consensus 153 ---~~----~~~~~Y~~sK~~~e~~~~~~--~~~~~----~iR~~~v~gp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (330)
T 2pzm_A 153 ---PT----APFTSYGISKTAGEAFLMMS--DVPVV----SLRLANVTGPRL-AIGPIPTFYKRLKAGQKCFCSDTVRDF 218 (330)
T ss_dssp ---CC----CCCSHHHHHHHHHHHHHHTC--SSCEE----EEEECEEECTTC-CSSHHHHHHHHHHTTCCCCEESCEECE
T ss_pred ---CC----CCCChHHHHHHHHHHHHHHc--CCCEE----EEeeeeeECcCC-CCCHHHHHHHHHHcCCEEeCCCCEecc
Confidence 00 12378999999999999876 33333 688 78888986 444310 0112
Q ss_pred CCHHhHHH-HHHHHHhhhccccccccc
Q psy8786 374 VNIFDDSS-TFNAFERVISHFLIGQQI 399 (484)
Q Consensus 374 ~~peevA~-~~~~L~s~~a~~itG~~i 399 (484)
..++|+|+ +++++++... |+.+
T Consensus 219 i~~~Dva~~a~~~~~~~~~----g~~~ 241 (330)
T 2pzm_A 219 LDMSDFLAIADLSLQEGRP----TGVF 241 (330)
T ss_dssp EEHHHHHHHHHHHTSTTCC----CEEE
T ss_pred eeHHHHHHHHHHHHhhcCC----CCEE
Confidence 67899999 9988886532 6655
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=120.54 Aligned_cols=163 Identities=10% Similarity=-0.028 Sum_probs=107.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH------------------HHHHHHHhc-----CCCCccHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA------------------EAVQVLKDR-----ASTVPFAI 242 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~------------------~~~~~l~~~-----~~~~~~~~ 242 (484)
+|+++||||+|+||++++++|+++ |++|++++|+.++.+ ...+.++.. .......
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~- 80 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRND- 80 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTC-
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCC-
Confidence 478999999999999999999999 899999999865421 111111111 0000000
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCC
Q psy8786 243 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322 (484)
Q Consensus 243 ~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
+...++|+.++..+++++... ..+++|++||...+...... +.+
T Consensus 81 --~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~Ss~~~~~~~~~~--------------------------------~~~ 124 (206)
T 1hdo_A 81 --LSPTTVMSEGARNIVAAMKAH--GVDKVVACTSAFLLWDPTKV--------------------------------PPR 124 (206)
T ss_dssp --CSCCCHHHHHHHHHHHHHHHH--TCCEEEEECCGGGTSCTTCS--------------------------------CGG
T ss_pred --CCccchHHHHHHHHHHHHHHh--CCCeEEEEeeeeeccCcccc--------------------------------ccc
Confidence 011247888888888877653 24699999998654322100 001
Q ss_pred ChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc-cCCCccC----------CCCCCHHhHHHHHHHHHhhhc
Q psy8786 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV-ATNMSSF----------MGNVNIFDDSSTFNAFERVIS 391 (484)
Q Consensus 323 ~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V-~T~m~~~----------~~~~~peevA~~~~~L~s~~a 391 (484)
...|+.+|++++.+++ .. |++++.|+||.+ .++.... ....+++|+|+.+.+++...
T Consensus 125 ~~~y~~~K~~~e~~~~-------~~----~i~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~- 192 (206)
T 1hdo_A 125 LQAVTDDHIRMHKVLR-------ES----GLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTD- 192 (206)
T ss_dssp GHHHHHHHHHHHHHHH-------HT----CSEEEEECCSEEECCCCCSCCEEESSSCSSCSEEEHHHHHHHHHHTTSCS-
T ss_pred chhHHHHHHHHHHHHH-------hC----CCCEEEEeCCcccCCCCCcceEecccCCCCCCccCHHHHHHHHHHHhcCc-
Confidence 2689999999998873 13 899999999998 4443211 12257899999999888653
Q ss_pred cccccccc
Q psy8786 392 HFLIGQQI 399 (484)
Q Consensus 392 ~~itG~~i 399 (484)
..+|+.+
T Consensus 193 -~~~g~~~ 199 (206)
T 1hdo_A 193 -EYDGHST 199 (206)
T ss_dssp -TTTTCEE
T ss_pred -cccccce
Confidence 2567766
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-12 Score=120.14 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=112.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH-------------HHHHHhc---------CCCCccHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA-------------VQVLKDR---------ASTVPFAIQAE 245 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~-------------~~~l~~~---------~~~~~~~~~~~ 245 (484)
+++||||+|+||++++++|+++ |++|++++|+.++.++. .+.+... ..... ..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~----~~ 76 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG----GK 76 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT----TS
T ss_pred eEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC----CC
Confidence 5999999999999999999998 89999999987643210 1122211 00000 02
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChh
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (484)
..+++|+.++..+++++... ..++||++||..+.......++ .. .+...
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~~~~~~~~~~e~--~~---------------------------~~~~~ 125 (219)
T 3dqp_A 77 SLLKVDLYGAVKLMQAAEKA--EVKRFILLSTIFSLQPEKWIGA--GF---------------------------DALKD 125 (219)
T ss_dssp SCCCCCCHHHHHHHHHHHHT--TCCEEEEECCTTTTCGGGCCSH--HH---------------------------HHTHH
T ss_pred CcEeEeHHHHHHHHHHHHHh--CCCEEEEECcccccCCCccccc--cc---------------------------ccccH
Confidence 36788999999999887542 2369999999877432211100 00 01278
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------CCCCHHhHHHHHHHHHhhhccccccc
Q psy8786 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--------GNVNIFDDSSTFNAFERVISHFLIGQ 397 (484)
Q Consensus 326 Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--------~~~~peevA~~~~~L~s~~a~~itG~ 397 (484)
|+.+|++.+.+++ ... |++++.|+||.+.++..... ....++|+|+.+++++.... ..|+
T Consensus 126 Y~~sK~~~e~~~~------~~~----~i~~~ilrp~~v~g~~~~~~~~~~~~~~~~i~~~Dva~~i~~~l~~~~--~~g~ 193 (219)
T 3dqp_A 126 YYIAKHFADLYLT------KET----NLDYTIIQPGALTEEEATGLIDINDEVSASNTIGDVADTIKELVMTDH--SIGK 193 (219)
T ss_dssp HHHHHHHHHHHHH------HSC----CCEEEEEEECSEECSCCCSEEEESSSCCCCEEHHHHHHHHHHHHTCGG--GTTE
T ss_pred HHHHHHHHHHHHH------hcc----CCcEEEEeCceEecCCCCCccccCCCcCCcccHHHHHHHHHHHHhCcc--ccCc
Confidence 9999999998885 223 89999999999988753321 23789999999999886543 2355
Q ss_pred cc
Q psy8786 398 QI 399 (484)
Q Consensus 398 ~i 399 (484)
.+
T Consensus 194 ~~ 195 (219)
T 3dqp_A 194 VI 195 (219)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=122.38 Aligned_cols=177 Identities=14% Similarity=0.003 Sum_probs=101.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------HHHHHHHHHh---c-----CC---CCccHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------GAEAVQVLKD---R-----AS---TVPFAIQA 244 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------~~~~~~~l~~---~-----~~---~~~~~~~~ 244 (484)
+|+||||||+|+||++++++|+++ |++|++++|+.+. .+...+.+.. + .. .....+++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~ 80 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQN-NWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQP 80 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEC------------------CHHHHHHHCCSEEEECC------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC-CCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCH
Confidence 478999999999999999999998 8999999976432 0111112221 1 11 11123567
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh
Q psy8786 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
+..+++|+.++.++++++.+. ++++|++||...+...... +... . ...+..
T Consensus 81 ~~~~~~n~~~~~~l~~a~~~~---~~~~v~~SS~~v~~~~~~~--------------------~~E~----~--~~~~~~ 131 (315)
T 2ydy_A 81 DAASQLNVDASGNLAKEAAAV---GAFLIYISSDYVFDGTNPP--------------------YREE----D--IPAPLN 131 (315)
T ss_dssp -------CHHHHHHHHHHHHH---TCEEEEEEEGGGSCSSSCS--------------------BCTT----S--CCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CCeEEEEchHHHcCCCCCC--------------------CCCC----C--CCCCcC
Confidence 889999999999999998763 4699999998765331100 0000 0 011237
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC---CCcc---------CC----------CCCCHHhHHHH
Q psy8786 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT---NMSS---------FM----------GNVNIFDDSST 382 (484)
Q Consensus 325 ~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T---~m~~---------~~----------~~~~peevA~~ 382 (484)
.|+.||++.+.+++.++.++ ..||++.|. |...+ ++.. .. ....++|+|++
T Consensus 132 ~Y~~sK~~~e~~~~~~~~~~------~~lR~~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 204 (315)
T 2ydy_A 132 LYGKTKLDGEKAVLENNLGA------AVLRIPILY-GEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATV 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHCTTC------EEEEECSEE-CSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCe------EEEeeeeee-CCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHH
Confidence 89999999999998765332 157777777 66555 2211 00 11578999999
Q ss_pred HHHHHhhh-ccccccccc
Q psy8786 383 FNAFERVI-SHFLIGQQI 399 (484)
Q Consensus 383 ~~~L~s~~-a~~itG~~i 399 (484)
+++++... .....|+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (315)
T 2ydy_A 205 CRQLAEKRMLDPSIKGTF 222 (315)
T ss_dssp HHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHhhccccCCCCeE
Confidence 98887643 122345554
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-11 Score=118.46 Aligned_cols=146 Identities=18% Similarity=0.122 Sum_probs=98.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-------------HHHHH-HHhc------CCCCccHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-------------EAVQV-LKDR------ASTVPFAIQAEK 246 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-------------~~~~~-l~~~------~~~~~~~~~~~~ 246 (484)
|+|+||||+|+||++++++|+++ |.+|++++|+....+ +..++ +... ...... .+.+.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~ 80 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND-GNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGS-QGKIS 80 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCCCCS-SSCGG
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEccccCCC-CChHH
Confidence 68999999999999999999998 899999999833221 11111 1111 111111 14556
Q ss_pred HHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhh
Q psy8786 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAY 326 (484)
Q Consensus 247 ~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (484)
.+++|+.++..+++++... .-.++|++||...++..... .+... ....|...|
T Consensus 81 ~~~~n~~~~~~ll~a~~~~--~~~r~v~~SS~~vyg~~~~~-------------------~~~E~------~~~~p~~~Y 133 (311)
T 3m2p_A 81 EFHDNEILTQNLYDACYEN--NISNIVYASTISAYSDETSL-------------------PWNEK------ELPLPDLMY 133 (311)
T ss_dssp GTHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGCCCGGGC-------------------SBCTT------SCCCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCEEEEEccHHHhCCCCCC-------------------CCCCC------CCCCCCchh
Confidence 7889999999999988653 23689999996655432210 00000 011134789
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 327 AVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 327 ~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
+.||.+.+.+++.++.+ . |++++.++||.+..+..
T Consensus 134 ~~sK~~~E~~~~~~~~~---~----g~~~~ilRp~~v~G~~~ 168 (311)
T 3m2p_A 134 GVSKLACEHIGNIYSRK---K----GLCIKNLRFAHLYGFNE 168 (311)
T ss_dssp HHHHHHHHHHHHHHHHH---S----CCEEEEEEECEEECSCC
T ss_pred HHHHHHHHHHHHHHHHH---c----CCCEEEEeeCceeCcCC
Confidence 99999999999887764 2 89999999999876543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-12 Score=118.98 Aligned_cols=173 Identities=10% Similarity=-0.046 Sum_probs=113.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-----------------HHHHHHHhc----CCCCccHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-----------------EAVQVLKDR----ASTVPFAIQAE 245 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-----------------~~~~~l~~~----~~~~~~~~~~~ 245 (484)
|+++||||+|+||++++++|+++ |++|++++|+.++.+ ...+.+++. ...... ....
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~-~~~~ 82 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG-WNNP 82 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC------
T ss_pred CEEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC-CCCh
Confidence 68999999999999999999999 899999999865421 122222211 011111 1222
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccc-cchHHHHHHHhhccccccccccccccCCCcccccCCCCCh
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQ-ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
..+++|+.++..+++++... ...++|++||....... ....+ .....+..
T Consensus 83 ~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss~~~~~~~~~~~~~---------------------------~~~~~p~~ 133 (227)
T 3dhn_A 83 DIYDETIKVYLTIIDGVKKA--GVNRFLMVGGAGSLFIAPGLRLM---------------------------DSGEVPEN 133 (227)
T ss_dssp -CCSHHHHHHHHHHHHHHHT--TCSEEEEECCSTTSEEETTEEGG---------------------------GTTCSCGG
T ss_pred hHHHHHHHHHHHHHHHHHHh--CCCEEEEeCChhhccCCCCCccc---------------------------cCCcchHH
Confidence 36888999999999887653 23699999998763221 11000 00112347
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----------------CCCHHhHHHHHHHHHh
Q psy8786 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----------------NVNIFDDSSTFNAFER 388 (484)
Q Consensus 325 ~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----------------~~~peevA~~~~~L~s 388 (484)
.|+.+|++.+.+.+.+++ . .|++++.++||.+.++...... ...++|+|+++..++.
T Consensus 134 ~Y~~sK~~~e~~~~~~~~---~----~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~ 206 (227)
T 3dhn_A 134 ILPGVKALGEFYLNFLMK---E----KEIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDELE 206 (227)
T ss_dssp GHHHHHHHHHHHHHTGGG---C----CSSEEEEEECCSEEESCCCCCCCEEESSBCCCCTTSCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh---c----cCccEEEEeCCcccCCCccccceeecCCCcccCCCCCcEEeHHHHHHHHHHHHh
Confidence 899999999988876554 2 2899999999998765432110 1468999999988875
Q ss_pred hhccccccccc
Q psy8786 389 VISHFLIGQQI 399 (484)
Q Consensus 389 ~~a~~itG~~i 399 (484)
.. ...|+.+
T Consensus 207 ~~--~~~g~~~ 215 (227)
T 3dhn_A 207 HP--KHHQERF 215 (227)
T ss_dssp SC--CCCSEEE
T ss_pred Cc--cccCcEE
Confidence 43 3456655
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-11 Score=119.52 Aligned_cols=175 Identities=19% Similarity=0.077 Sum_probs=114.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhc-C-C---CeEEEEecCch-----hHH------------------HHHHHHHhc-----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQ-F-D---GYIYLTARDKK-----KGA------------------EAVQVLKDR----- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~-g-g---a~Vvl~~R~~~-----~~~------------------~~~~~l~~~----- 234 (484)
++|||||+|+||++++++|+++ + | ++|++++|+.. .++ +..+++-..
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 81 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAIV 81 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEEE
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEEE
Confidence 5999999999999999999985 3 5 78999988531 111 111111111
Q ss_pred --CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 --ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 --~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
..... ..++++..+++|+.++.++++++.+.. .++||++||.+.++..... .+.
T Consensus 82 h~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~--~~~~v~~SS~~vyg~~~~~-------------------~~~ 140 (337)
T 1r6d_A 82 HFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG--VGRVVHVSTNQVYGSIDSG-------------------SWT 140 (337)
T ss_dssp ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT--CCEEEEEEEGGGGCCCSSS-------------------CBC
T ss_pred ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEecchHHhCCCCCC-------------------CCC
Confidence 11111 124567789999999999999988752 3699999997654322100 000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------------------
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------------ 371 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------------ 371 (484)
. . ....+...|+.||++.+.+++.++.++ |++++.++||.+.++.....
T Consensus 141 E----~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
T 1r6d_A 141 E----S--SPLEPNSPYAASKAGSDLVARAYHRTY-------GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPL 207 (337)
T ss_dssp T----T--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEE
T ss_pred C----C--CCCCCCCchHHHHHHHHHHHHHHHHHH-------CCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEE
Confidence 0 0 001123789999999999999888754 79999999999887653210
Q ss_pred -C-------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 -G-------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 -~-------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ...++|+|+++.+++... .+|+.+
T Consensus 208 ~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~ 240 (337)
T 1r6d_A 208 YGDGANVREWVHTDDHCRGIALVLAGG---RAGEIY 240 (337)
T ss_dssp ETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEE
T ss_pred eCCCCeeEeeEeHHHHHHHHHHHHhCC---CCCCEE
Confidence 0 035688888887777532 245555
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=121.71 Aligned_cols=172 Identities=16% Similarity=0.022 Sum_probs=110.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----h------------HHHHHHHHHhc------CCCCcc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----K------------GAEAVQVLKDR------ASTVPF 240 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~------------~~~~~~~l~~~------~~~~~~ 240 (484)
++.+|+||||||+|+||++++++|+++ |++|++++|+.. . .+-...++... ......
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~~~~ 82 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHKSV 82 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCCCCH
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccccCCEEEECCccCCh
Confidence 456789999999999999999999999 899999999754 1 11111122111 111110
Q ss_pred ---HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccc
Q psy8786 241 ---AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317 (484)
Q Consensus 241 ---~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (484)
....+..++ |+.++.++++++... .-.++|++||...+...... .....
T Consensus 83 ~~~~~~~~~~~~-n~~~~~~ll~a~~~~--~v~~~v~~SS~~v~~~~~~~-------------------~~~E~------ 134 (321)
T 3vps_A 83 PRSFKQPLDYLD-NVDSGRHLLALCTSV--GVPKVVVGSTCEVYGQADTL-------------------PTPED------ 134 (321)
T ss_dssp HHHTTSTTTTHH-HHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCSCSSS-------------------SBCTT------
T ss_pred HHHHhCHHHHHH-HHHHHHHHHHHHHHc--CCCeEEEecCHHHhCCCCCC-------------------CCCCC------
Confidence 122234556 999999999888653 13699999998764332110 00000
Q ss_pred cCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCe-EEEEEeCCcccCCCccCC-------------------C-----
Q psy8786 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK-VINAVHPGYVATNMSSFM-------------------G----- 372 (484)
Q Consensus 318 ~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gI-rVNaV~PG~V~T~m~~~~-------------------~----- 372 (484)
....+...|+.||.+.+.+++.++.+. |+ +++.++||.+..+..... .
T Consensus 135 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (321)
T 3vps_A 135 SPLSPRSPYAASKVGLEMVAGAHQRAS-------VAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQR 207 (321)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHSS-------SSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHc-------CCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCce
Confidence 001133789999999999998777642 78 999999999977643311 0
Q ss_pred --CCCHHhHHHHHHHHHhhh
Q psy8786 373 --NVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 373 --~~~peevA~~~~~L~s~~ 390 (484)
...++|+|+++.+++...
T Consensus 208 ~~~v~v~Dva~~~~~~~~~~ 227 (321)
T 3vps_A 208 RDFTYITDVVDKLVALANRP 227 (321)
T ss_dssp ECEEEHHHHHHHHHHGGGSC
T ss_pred EceEEHHHHHHHHHHHHhcC
Confidence 036778888887777543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=126.27 Aligned_cols=157 Identities=17% Similarity=0.072 Sum_probs=100.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHH----------------HHHHHhc----------C
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEA----------------VQVLKDR----------A 235 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~----------------~~~l~~~----------~ 235 (484)
++++|+|+||||+|+||++++++|+++ | ++|++++|+.+...+. .+.+... .
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A 107 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLA 107 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECC
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECC
Confidence 467899999999999999999999998 7 8999999874321100 0111111 1
Q ss_pred CCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCC
Q psy8786 236 STVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEH 312 (484)
Q Consensus 236 ~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (484)
.... ..++++..+++|+.++..+++++... ....++|++||...++..... .+.. .+ ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~~V~~SS~~vyg~~~~~-~~~~-----~E-----------~~ 169 (377)
T 2q1s_A 108 TYHGNQSSIHDPLADHENNTLTTLKLYERLKHF-KRLKKVVYSAAGCSIAEKTFD-DAKA-----TE-----------ET 169 (377)
T ss_dssp CCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTC-SSCCEEEEEEEC--------------------C-----------CC
T ss_pred CccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCCHHHcCCCCCC-CcCc-----cc-----------cc
Confidence 1111 12456788999999999999987542 023699999997654322110 0000 00 00
Q ss_pred CcccccCC-CCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 313 PRAHVAKG-WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 313 ~~~~~~~~-~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
.. ... .+...|+.||++.+.+++.++.++ |++++.|+||.|.++..
T Consensus 170 ~~---~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 170 DI---VSLHNNDSPYSMSKIFGEFYSVYYHKQH-------QLPTVRARFQNVYGPGE 216 (377)
T ss_dssp CC---CCSSCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECCEECTTC
T ss_pred cc---ccccCCCCchHHHHHHHHHHHHHHHHHh-------CCCEEEEeeccEECCCC
Confidence 00 000 123789999999999999887654 79999999999987654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=123.70 Aligned_cols=189 Identities=12% Similarity=-0.009 Sum_probs=119.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH--------------------HHHHHHHhc------CC
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA--------------------EAVQVLKDR------AS 236 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~--------------------~~~~~l~~~------~~ 236 (484)
+|++|+||||||+|+||++++++|++++|++|++++|+.++.+ ...+.+... ..
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~ 100 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA 100 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence 4677999999999999999999999985689999999754321 111122211 11
Q ss_pred CCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCC
Q psy8786 237 TVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHP 313 (484)
Q Consensus 237 ~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (484)
... ..++.+..+++|+.++..+++++... +.++|++||...++...... + ......
T Consensus 101 ~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~---~~~~v~~SS~~vyg~~~~~~-~-----------------~e~~~~ 159 (372)
T 3slg_A 101 IATPATYVKQPLRVFELDFEANLPIVRSAVKY---GKHLVFPSTSEVYGMCADEQ-F-----------------DPDASA 159 (372)
T ss_dssp CCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH---TCEEEEECCGGGGBSCCCSS-B-----------------CTTTCC
T ss_pred cccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh---CCcEEEeCcHHHhCCCCCCC-C-----------------Cccccc
Confidence 111 12455678899999999999988654 27999999966543321100 0 000000
Q ss_pred cccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC----------------------C
Q psy8786 314 RAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF----------------------M 371 (484)
Q Consensus 314 ~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~----------------------~ 371 (484)
........+...|+.||.+.+.+++.++. + |++++.++||.|..+.... .
T Consensus 160 ~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~----~----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
T 3slg_A 160 LTYGPINKPRWIYACSKQLMDRVIWGYGM----E----GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGE 231 (372)
T ss_dssp EEECCTTCTTHHHHHHHHHHHHHHHHHHT----T----TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTC
T ss_pred cccCCCCCCCCcHHHHHHHHHHHHHHHHH----C----CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCC
Confidence 00000001336899999999999876654 2 6999999999986664221 0
Q ss_pred ------------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 ------------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 ------------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
.....+|+|+++++++........|+.++
T Consensus 232 ~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~n 272 (372)
T 3slg_A 232 NISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYN 272 (372)
T ss_dssp CEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEE
T ss_pred CcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCCCceEE
Confidence 01467899999888876554434566653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=125.77 Aligned_cols=176 Identities=12% Similarity=0.037 Sum_probs=114.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH------------------HHHHHHhc-------CCCCccH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE------------------AVQVLKDR-------ASTVPFA 241 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~------------------~~~~l~~~-------~~~~~~~ 241 (484)
++||||||+|+||++++++|+++ |++|++++|+.++.++ ..+.+... +......
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~~~~~ 92 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAA-GHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRP 92 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--------
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccCcCCC
Confidence 37999999999999999999998 8999999997543221 11111111 1111123
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 242 ~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
++++..+++|+.++.++++++.+. ..+++|++||...+....... .... .. ...
T Consensus 93 ~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~SS~~~~~~~~~~~------------------~~~E----~~--~~~ 146 (342)
T 2x4g_A 93 RRWQEEVASALGQTNPFYAACLQA--RVPRILYVGSAYAMPRHPQGL------------------PGHE----GL--FYD 146 (342)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH--TCSCEEEECCGGGSCCCTTSS------------------CBCT----TC--CCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEECCHHhhCcCCCCC------------------CCCC----CC--CCC
Confidence 567778999999999999998874 237999999987653221100 0000 00 001
Q ss_pred C----ChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc-c-CC---------C-----------CCC
Q psy8786 322 P----DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS-S-FM---------G-----------NVN 375 (484)
Q Consensus 322 ~----~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~-~-~~---------~-----------~~~ 375 (484)
+ ...|+.||++.+.+++.++. . |++++.|+||.+.++.. . .. . ...
T Consensus 147 p~~~~~~~Y~~sK~~~e~~~~~~~~----~----g~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (342)
T 2x4g_A 147 SLPSGKSSYVLCKWALDEQAREQAR----N----GLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVID 218 (342)
T ss_dssp SCCTTSCHHHHHHHHHHHHHHHHHH----T----TCCEEEEEECEEECSCCSSCSTTHHHHHHHTTCCCEEECCEEEEEE
T ss_pred ccccccChHHHHHHHHHHHHHHHhh----c----CCcEEEEeCCceECCCCccccHHHHHHHHHcCCCccccCCCcceee
Confidence 1 36899999999999987764 2 79999999999988754 2 00 0 147
Q ss_pred HHhHHHHHHHHHhhhcccccccccc
Q psy8786 376 IFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 376 peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
++|+|+.+.+++..... |+.++
T Consensus 219 v~Dva~~~~~~~~~~~~---g~~~~ 240 (342)
T 2x4g_A 219 AAEAGRGLLMALERGRI---GERYL 240 (342)
T ss_dssp HHHHHHHHHHHHHHSCT---TCEEE
T ss_pred HHHHHHHHHHHHhCCCC---CceEE
Confidence 88999999888865432 66553
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=122.70 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=106.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh---c-----CCCCc---cHHHHHHHHHhh
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD---R-----ASTVP---FAIQAEKTILTN 251 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~---~-----~~~~~---~~~~~~~~~~vN 251 (484)
.|+||||||+|+||++++++|+++ |++|++++|+.- +.+...+.+.. + ..... ..++++..+++|
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n 90 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGK-NVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKIN 90 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTS-SEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHH
T ss_pred cceEEEECCCChHHHHHHHHHHhC-CCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHH
Confidence 478999999999999999999998 899999988532 22222233331 1 11111 235678899999
Q ss_pred hHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHH
Q psy8786 252 YLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKI 331 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKa 331 (484)
+.++.++++++.+. +.+||++||.+.+...... .+.. . ....+...|+.||+
T Consensus 91 v~~~~~l~~a~~~~---~~~iv~~SS~~v~~~~~~~-------------------~~~E----~--~~~~~~~~Y~~sK~ 142 (292)
T 1vl0_A 91 AIGPKNLAAAAYSV---GAEIVQISTDYVFDGEAKE-------------------PITE----F--DEVNPQSAYGKTKL 142 (292)
T ss_dssp THHHHHHHHHHHHH---TCEEEEEEEGGGSCSCCSS-------------------CBCT----T--SCCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCeEEEechHHeECCCCCC-------------------CCCC----C--CCCCCccHHHHHHH
Confidence 99999999998763 3499999998664322110 0000 0 00112368999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC---CccC------------------CCCCCHHhHHHHHHHHHhhh
Q psy8786 332 GVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN---MSSF------------------MGNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 332 Al~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~---m~~~------------------~~~~~peevA~~~~~L~s~~ 390 (484)
+.+.+++.++. .+..|.|+.|..+ +... .....++|+|+.+.+++...
T Consensus 143 ~~E~~~~~~~~-----------~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~ 211 (292)
T 1vl0_A 143 EGENFVKALNP-----------KYYIVRTAWLYGDGNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEK 211 (292)
T ss_dssp HHHHHHHHHCS-----------SEEEEEECSEESSSSCHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCC-----------CeEEEeeeeeeCCCcChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHHhcC
Confidence 99999976542 2355566655432 1100 01145788999888887653
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=114.17 Aligned_cols=155 Identities=17% Similarity=0.085 Sum_probs=96.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC----eEEEE-----ec-CchhHHHHHHHHHhc-----CCCCc----cHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG----YIYLT-----AR-DKKKGAEAVQVLKDR-----ASTVP----FAI 242 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga----~Vvl~-----~R-~~~~~~~~~~~l~~~-----~~~~~----~~~ 242 (484)
+++++|+||||||+|+||++++++|+++ |. ....+ |. +.+..+++.+...-+ ..... ..+
T Consensus 2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~ 80 (319)
T 4b8w_A 2 LYFQSMRILVTGGSGLVGKAIQKVVADG-AGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIK 80 (319)
T ss_dssp CCCCCCEEEEETCSSHHHHHHHHHHHTT-TCCTTCEEEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHTT
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhc-CCcccccccccCceecccCCHHHHHHHHhhcCCCEEEECceeccccccccc
Confidence 3467899999999999999999999998 43 22211 11 223333333321111 11111 124
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCC
Q psy8786 243 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322 (484)
Q Consensus 243 ~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
+.+..+++|+.|+.++++++... .-.++|++||...++...... +..... ......+
T Consensus 81 ~~~~~~~~nv~gt~~ll~a~~~~--~~~~~v~~SS~~vyg~~~~~~-------------------~~E~~~--~~~~~~p 137 (319)
T 4b8w_A 81 YNLDFWRKNVHMNDNVLHSAFEV--GARKVVSCLSTCIFPDKTTYP-------------------IDETMI--HNGPPHN 137 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT--TCSEEEEECCGGGSCSSCCSS-------------------BCGGGG--GBSCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEcchhhcCCCCCCC-------------------cccccc--ccCCCCC
Confidence 56678999999999999987653 235899999986653321100 000000 0000111
Q ss_pred C-hhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 323 D-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 323 ~-~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
. ..|+.||.+.+.+++.++++. |++++.++||.|..+.
T Consensus 138 ~~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilRp~~v~Gp~ 176 (319)
T 4b8w_A 138 SNFGYSYAKRMIDVQNRAYFQQY-------GCTFTAVIPTNVFGPH 176 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECTT
T ss_pred CcchHHHHHHHHHHHHHHHHHhh-------CCCEEEEeeccccCCC
Confidence 1 369999999999998887654 7999999999987654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-11 Score=117.44 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=107.7
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh---c-----CCCCcc---HHHHHHHHHhhhH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD---R-----ASTVPF---AIQAEKTILTNYL 253 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~---~-----~~~~~~---~~~~~~~~~vN~~ 253 (484)
++|||||+|+||++++++|+++ |++|++++|..- +.+...+.+.. + ...... .++++..+++|+.
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~ 85 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPE-EYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAI 85 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTT-TEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTH
T ss_pred EEEEECCCCHHHHHHHHHHHhC-CCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHH
Confidence 7999999999999999999998 899999998532 22223333332 1 111111 1467889999999
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHH
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGV 333 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl 333 (484)
++..+++++... +.++|++||...+...... .+... ....|...|+.+|.+.
T Consensus 86 ~~~~l~~~~~~~---~~~~v~~SS~~vy~~~~~~-------------------~~~E~------~~~~p~~~Y~~sK~~~ 137 (287)
T 3sc6_A 86 GARNVAVASQLV---GAKLVYISTDYVFQGDRPE-------------------GYDEF------HNPAPINIYGASKYAG 137 (287)
T ss_dssp HHHHHHHHHHHH---TCEEEEEEEGGGSCCCCSS-------------------CBCTT------SCCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCeEEEEchhhhcCCCCCC-------------------CCCCC------CCCCCCCHHHHHHHHH
Confidence 999999988653 4589999998764322110 00000 0011347899999999
Q ss_pred HHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------------------CCCCHHhHHHHHHHHHhhh
Q psy8786 334 NLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----------------------GNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 334 ~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----------------------~~~~peevA~~~~~L~s~~ 390 (484)
+.+++.++. +++.++||.+..+..... ....++|+|+++.+++...
T Consensus 138 E~~~~~~~~-----------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~ 205 (287)
T 3sc6_A 138 EQFVKELHN-----------KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTS 205 (287)
T ss_dssp HHHHHHHCS-----------SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHHTSC
T ss_pred HHHHHHhCC-----------CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHHhCC
Confidence 999865432 347889998866532211 0134889999988887543
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-11 Score=120.03 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=118.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-------------------HHHH-HHHhc------C-CCCc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-------------------EAVQ-VLKDR------A-STVP 239 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-------------------~~~~-~l~~~------~-~~~~ 239 (484)
|+||||||+|+||++++++|++++|++|++++|+.++.+ +..+ .+.+. . ....
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~~~ 80 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATP 80 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccccCc
Confidence 469999999999999999999975689999998754321 1111 11111 1 1111
Q ss_pred --cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcc-c
Q psy8786 240 --FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRA-H 316 (484)
Q Consensus 240 --~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (484)
..++.+..+++|+.++..+++++... +.++|++||...++...... +....... .
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~v~~SS~~v~g~~~~~~-------------------~~e~~~~~~~ 138 (345)
T 2bll_A 81 IEYTRNPLRVFELDFEENLRIIRYCVKY---RKRIIFPSTSEVYGMCSDKY-------------------FDEDHSNLIV 138 (345)
T ss_dssp HHHHHSHHHHHHHHTHHHHHHHHHHHHT---TCEEEEECCGGGGBTCCCSS-------------------BCTTTCCCBC
T ss_pred cchhcCHHHHHHHHHHHHHHHHHHHHHh---CCeEEEEecHHHcCCCCCCC-------------------cCCccccccc
Confidence 12456778999999999999988653 37999999976543221100 00000000 0
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------------------
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------------------- 371 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------------------- 371 (484)
.....+...|+.||++.+.+++.++.+. |++++.|+||.|..+.....
T Consensus 139 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (345)
T 2bll_A 139 GPVNKPRWIYSVSKQLLDRVIWAYGEKE-------GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIK 211 (345)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEE
T ss_pred CcccCcccccHHHHHHHHHHHHHHHHhc-------CCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcE
Confidence 0000122589999999999999887653 79999999999976643110
Q ss_pred ---------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 ---------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 ---------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
....++|+|+++++++........|+.++
T Consensus 212 ~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~ 249 (345)
T 2bll_A 212 LIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIIN 249 (345)
T ss_dssp EGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEE
T ss_pred EECCCCEEEEEEEHHHHHHHHHHHHhhccccCCCceEE
Confidence 01467788888888776544334566553
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-12 Score=124.88 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=103.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCC-------CeEEEEecCchhH------------------HHHHHHHHhc-
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFD-------GYIYLTARDKKKG------------------AEAVQVLKDR- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gg-------a~Vvl~~R~~~~~------------------~~~~~~l~~~- 234 (484)
..++++|+||||||+|+||++++++|+++ | ++|++++|+.+.. +...+.+...
T Consensus 9 ~~~~~~~~vlVtGa~G~iG~~l~~~L~~~-g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 87 (342)
T 2hrz_A 9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKD-GSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARP 87 (342)
T ss_dssp CSCCSCEEEEEETTTSHHHHHHHHHHHHH-CEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCC
T ss_pred CCCccCCEEEEECCCcHHHHHHHHHHHhc-CCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCC
Confidence 35578899999999999999999999998 7 7899988864210 1122222211
Q ss_pred -----CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 235 -----ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 235 -----~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
..... ..++++..+++|+.|+..+++++.+..++ .++||++||.+.+......
T Consensus 88 d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~---------------- 151 (342)
T 2hrz_A 88 DVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPY---------------- 151 (342)
T ss_dssp SEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCS----------------
T ss_pred CEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCC----------------
Confidence 11111 13567889999999999999998875321 4799999998765322110
Q ss_pred cccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEe--CCcccC
Q psy8786 304 RSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH--PGYVAT 365 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~--PG~V~T 365 (484)
.+... ....+...|+.||++.+.+++.++.+..-. ...||++.|. ||.+.+
T Consensus 152 ---~~~E~------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~--~~~ir~~~v~g~pg~~~~ 204 (342)
T 2hrz_A 152 ---PIPDE------FHTTPLTSYGTQKAICELLLSDYSRRGFFD--GIGIRLPTICIRPGKPNA 204 (342)
T ss_dssp ---SBCTT------CCCCCSSHHHHHHHHHHHHHHHHHHTTSCE--EEEEEECEETTCCSSCCC
T ss_pred ---CcCCC------CCCCCcchHHHHHHHHHHHHHHHHHhcCCC--ceeEEeeeEEecCCCCcc
Confidence 00000 001123789999999999998877653110 1147888887 887654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-12 Score=126.95 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=94.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH--HHHHHHh--c---------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE--AVQVLKD--R--------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~--~~~~l~~--~--------------------------- 234 (484)
+|+||||||+|+||++++++|+++ |++|++++|+.++.++ ....+.. .
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQK-GYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHT-TCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 689999999999999999999998 8999988887543211 0011110 0
Q ss_pred CC-CCccHHH-HHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 AS-TVPFAIQ-AEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~-~~~~~~~-~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
.. ......+ .+..+++|+.|++++++++.+.. ..++||++||.++. ..+... .. ..+...
T Consensus 88 A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~r~V~~SS~~~~~~~~~~~-----------~~-----~~~~E~ 150 (338)
T 2rh8_A 88 ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK-SVKRVILTSSAAAVTINQLDG-----------TG-----LVVDEK 150 (338)
T ss_dssp SSCCCC---------CHHHHHHHHHHHHHHHHCT-TCCEEEEECCHHHHHHHHHTC-----------SC-----CCCCTT
T ss_pred CCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC-CcCEEEEEecHHHeecCCcCC-----------CC-----cccChh
Confidence 11 1111122 23488999999999999987642 13699999997742 111100 00 000000
Q ss_pred CCccccc--CCC-CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 312 HPRAHVA--KGW-PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 312 ~~~~~~~--~~~-~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
....... ... +...|+.||++.+.+++.++++ . |+++++|+||.|.++..
T Consensus 151 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~----gi~~~~lrp~~v~Gp~~ 203 (338)
T 2rh8_A 151 NWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEE---N----NIDLITVIPTLMAGSSL 203 (338)
T ss_dssp TTTCC-------CCCCCCTTSCCHHHHHHHHHHHH---H----TCCEEEEEECEEESCCS
T ss_pred hccchhhccccCCccchHHHHHHHHHHHHHHHHHH---c----CCcEEEEeCCceECCCC
Confidence 0000000 000 0126999999998888766543 3 89999999999988864
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=124.00 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=100.0
Q ss_pred CEEEEEcCCchHHHHHHHHHH-hcCCCeEEEEecCchh---------HHHH-----------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLC-EQFDGYIYLTARDKKK---------GAEA----------------------------- 227 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La-~~gga~Vvl~~R~~~~---------~~~~----------------------------- 227 (484)
++||||||+|+||++++++|+ ++ |++|++++|+... .+..
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhC-CCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 579999999999999999999 88 8999999886432 1211
Q ss_pred ---HHHHH--h-c------CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHH
Q psy8786 228 ---VQVLK--D-R------ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKK 292 (484)
Q Consensus 228 ---~~~l~--~-~------~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~ 292 (484)
.+.+. . . ..... ..++++..+++|+.+++++++++... ..++||++||.+.++..... ...
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~--~~~~iv~~SS~~v~g~~~~~-~~~- 157 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH--KCDKIIFSSSAAIFGNPTMG-SVS- 157 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGTBSCCC------
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh--CCCEEEEECCHHHhCCCCcc-ccc-
Confidence 11111 1 0 01111 12456788999999999999987542 23699999997654322200 000
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
. ... .+.... ...+...|+.||++.+.+++.++.++ ||++++|+||.|..+.
T Consensus 158 ---~--~~~-----~~~E~~------~~~p~~~Y~~sK~~~e~~~~~~~~~~-------gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 158 ---T--NAE-----PIDINA------KKSPESPYGESKLIAERMIRDCAEAY-------GIKGICLRYFNACGAH 209 (397)
T ss_dssp ------CCC-----CBCTTS------CCBCSSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECCC
T ss_pred ---c--ccc-----CcCccC------CCCCCCchHHHHHHHHHHHHHHHHHH-------CCcEEEEeccceeCCC
Confidence 0 000 000000 01123789999999999999988765 7999999999997664
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-11 Score=123.27 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=99.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-----------------H-------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-----------------E------------------- 226 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-----------------~------------------- 226 (484)
..++.+||||||+|.||++++++|+++ |++|++++|+..... .
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl 86 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDI 86 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhC-CCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCC
Confidence 347789999999999999999999998 899999987633210 0
Q ss_pred -----HHHHHHh---c-----CCCC------ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccch
Q psy8786 227 -----AVQVLKD---R-----ASTV------PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN 287 (484)
Q Consensus 227 -----~~~~l~~---~-----~~~~------~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~ 287 (484)
..+.+.. + .... ...+.++..+++|+.|+.++++++.+.- ...+||++||.+.++.....
T Consensus 87 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~SS~~vyg~~~~~ 165 (404)
T 1i24_A 87 CDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTMGEYGTPNID 165 (404)
T ss_dssp TSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGGCCCSSC
T ss_pred CCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeCcHHHhCCCCCC
Confidence 0011111 0 1100 0123345688999999999999987641 12499999997654322100
Q ss_pred HHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
..+.. ..... ............+...|+.||++.+.+++.++.++ ||++++|+||.|.++.
T Consensus 166 ---------~~E~~-~~~~~--~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------gi~~~ivrp~~v~Gp~ 226 (404)
T 1i24_A 166 ---------IEEGY-ITITH--NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-------GIRATDLNQGVVYGVK 226 (404)
T ss_dssp ---------BCSSE-EEEEE--TTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECSC
T ss_pred ---------CCccc-ccccc--ccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc-------CCeEEEEecceeeCCC
Confidence 00000 00000 00000000011133789999999999999887754 7999999999998774
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-12 Score=157.47 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhH---HHHHHHHHhc--------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKG---AEAVQVLKDR-------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~---~~~~~~l~~~-------------------------- 234 (484)
.+|++|||||++|||+++|+.|+++ |++ |++++|+.++. ++.++++...
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLR-GAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHC-CCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999999 775 88889985432 2333333211
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhh
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~ 296 (484)
.....+.++|+..+++|+.|++++.+++.+.+++.++||++||.++ .+.+.
T Consensus 1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g----------- 2030 (2512)
T 2vz8_A 1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAG----------- 2030 (2512)
T ss_dssp HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTT-----------
T ss_pred cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCC-----------
Confidence 1122344789999999999999999999998877799999999988 33332
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
+..|++||+++.+|++.++. + |+...++..|.+
T Consensus 2031 --------------------------~~~Y~aaKaal~~l~~~rr~----~----Gl~~~a~~~g~~ 2063 (2512)
T 2vz8_A 2031 --------------------------QANYGFANSAMERICEKRRH----D----GLPGLAVQWGAI 2063 (2512)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHH----T----TSCCCEEEECCB
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHH----C----CCcEEEEEccCc
Confidence 27899999999999997664 2 777778877765
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=114.28 Aligned_cols=131 Identities=11% Similarity=0.002 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchh-----------HHHHHHHHHhc-------CCCC--ccHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKK-----------GAEAVQVLKDR-------ASTV--PFAI 242 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~-----------~~~~~~~l~~~-------~~~~--~~~~ 242 (484)
.+|+++||||+|+||++++++|+++ |. +|++++|+.++ +.+. +.+... .... ...+
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~-g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~-~~~~~~~~d~vi~~a~~~~~~~~ 81 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVGPLAEL-LPQLDGSIDTAFCCLGTTIKEAG 81 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCCCCTTEECCBSCHHHH-GGGCCSCCSEEEECCCCCHHHHS
T ss_pred CCceEEEECCCcHHHHHHHHHHHhC-CCCCeEEEEeCCCcccCCCceEEeccccCH-HHHHHhhhcEEEECeeeccccCC
Confidence 4688999999999999999999999 76 89999998643 1110 111110 0000 1124
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCC
Q psy8786 243 QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322 (484)
Q Consensus 243 ~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
.++..+++|+.++..+++++.+. ..+++|++||...+..+
T Consensus 82 ~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~Ss~~~~~~~-------------------------------------- 121 (215)
T 2a35_A 82 SEEAFRAVDFDLPLAVGKRALEM--GARHYLVVSALGADAKS-------------------------------------- 121 (215)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECCTTCCTTC--------------------------------------
T ss_pred CHHHHHHhhHHHHHHHHHHHHHc--CCCEEEEECCcccCCCC--------------------------------------
Confidence 57788899999999999987653 23689999998765322
Q ss_pred ChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeE-EEEEeCCcccCCCc
Q psy8786 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV-INAVHPGYVATNMS 368 (484)
Q Consensus 323 ~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIr-VNaV~PG~V~T~m~ 368 (484)
...|+.+|++++.+++. . |++ ++.|+||.+.++..
T Consensus 122 ~~~y~~sK~~~e~~~~~-------~----~~~~~~~vrp~~v~g~~~ 157 (215)
T 2a35_A 122 SIFYNRVKGELEQALQE-------Q----GWPQLTIARPSLLFGPRE 157 (215)
T ss_dssp SSHHHHHHHHHHHHHTT-------S----CCSEEEEEECCSEESTTS
T ss_pred ccHHHHHHHHHHHHHHH-------c----CCCeEEEEeCceeeCCCC
Confidence 16799999999988752 2 788 99999999988753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=120.44 Aligned_cols=147 Identities=14% Similarity=-0.005 Sum_probs=97.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh----------HHHH---------------------HHHHHh-
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK----------GAEA---------------------VQVLKD- 233 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~----------~~~~---------------------~~~l~~- 233 (484)
+|+||||||+|+||++++++|+++ |++|++++|+... .++. .+.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 478999999999999999999998 8999998874321 1111 111110
Q ss_pred c-------CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccc
Q psy8786 234 R-------ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303 (484)
Q Consensus 234 ~-------~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~ 303 (484)
. ..... ..++++..+++|+.++.++++++... ..++||++||...++.....
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~SS~~~~g~~~~~---------------- 142 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH--GVKNLVFSSSATVYGNPQYL---------------- 142 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGGCSCSSS----------------
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh--CCCEEEEECcHHHhCCCCCC----------------
Confidence 0 11111 22456788999999999999876542 23799999997765322110
Q ss_pred cccccccCCCcccccCCCC-ChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 304 RSLNITKEHPRAHVAKGWP-DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~-~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+.... ...+ ...|+.||++.+.+++.++.+ . . ++++..++||.+-.+
T Consensus 143 ---~~~E~~------~~~p~~~~Y~~sK~~~e~~~~~~~~~-~-~----~~~~~~lR~~~v~G~ 191 (348)
T 1ek6_A 143 ---PLDEAH------PTGGCTNPYGKSKFFIEEMIRDLCQA-D-K----TWNAVLLRYFNPTGA 191 (348)
T ss_dssp ---SBCTTS------CCCCCSSHHHHHHHHHHHHHHHHHHH-C-T----TCEEEEEEECEEECC
T ss_pred ---CcCCCC------CCCCCCCchHHHHHHHHHHHHHHHhc-C-C----CcceEEEeeccccCC
Confidence 000000 0011 378999999999999988875 2 2 699999999877554
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=114.00 Aligned_cols=143 Identities=17% Similarity=0.093 Sum_probs=97.4
Q ss_pred EEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhH----------------HHHHHHHH-h----c--------CCCC
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKG----------------AEAVQVLK-D----R--------ASTV 238 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~----------------~~~~~~l~-~----~--------~~~~ 238 (484)
+|||||+|+||++++++|+++ | +.|++++|+.... .+..+.+. . . ....
T Consensus 2 vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~ 80 (310)
T 1eq2_A 2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSS 80 (310)
T ss_dssp EEEETTTSHHHHHHHHHHHTT-TCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCC
T ss_pred EEEEcCccHHHHHHHHHHHHC-CCcEEEEEccCCCCchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECccccc
Confidence 899999999999999999998 7 8899998875421 11122222 1 1 1111
Q ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 239 ~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
...++.+..+++|+.++..+++++... .. ++|++||...++...... +. ...
T Consensus 81 ~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~-~~v~~SS~~v~g~~~~~~-------------------~~----E~~-- 132 (310)
T 1eq2_A 81 TTEWDGKYMMDNNYQYSKELLHYCLER--EI-PFLYASSAATYGGRTSDF-------------------IE----SRE-- 132 (310)
T ss_dssp TTCCCHHHHHHHTHHHHHHHHHHHHHH--TC-CEEEEEEGGGGTTCCSCB-------------------CS----SGG--
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHc--CC-eEEEEeeHHHhCCCCCCC-------------------CC----CCC--
Confidence 122456788999999999999988764 23 999999986543221100 00 000
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
...+...|+.||.+.+.+++.++.+ . |++++.|+||.|..+.
T Consensus 133 ~~~p~~~Y~~sK~~~e~~~~~~~~~---~----g~~~~~lrp~~v~G~~ 174 (310)
T 1eq2_A 133 YEKPLNVYGYSKFLFDEYVRQILPE---A----NSQIVGFRYFNVYGPR 174 (310)
T ss_dssp GCCCSSHHHHHHHHHHHHHHHHGGG---C----SSCEEEEEECEEESSS
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHH---c----CCCEEEEeCCcEECcC
Confidence 0112368999999999999876643 2 8999999999987764
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=128.66 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=122.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-------------------HHHH-HHHhc------CCC
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-------------------EAVQ-VLKDR------AST 237 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-------------------~~~~-~l~~~------~~~ 237 (484)
+++|+|+||||+|+||++++++|++++|++|++++|+.++.+ +..+ .+... ...
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~ 392 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI 392 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEECCCC
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhcCCCEEEECcee
Confidence 477899999999999999999999975678999998754321 1122 12211 111
Q ss_pred Cc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCc
Q psy8786 238 VP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314 (484)
Q Consensus 238 ~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (484)
.. ..++.+..+++|+.|+..+++++... +.++|++||...++..... .+......
T Consensus 393 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---~~r~V~~SS~~vyg~~~~~-------------------~~~E~~~~ 450 (660)
T 1z7e_A 393 ATPIEYTRNPLRVFELDFEENLRIIRYCVKY---RKRIIFPSTSEVYGMCSDK-------------------YFDEDHSN 450 (660)
T ss_dssp CCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT---TCEEEEECCGGGGBTCCSS-------------------SBCTTTCC
T ss_pred cCccccccCHHHHHHhhhHHHHHHHHHHHHh---CCEEEEEecHHHcCCCCCc-------------------ccCCCccc
Confidence 11 23556788999999999999988763 3899999997664322110 00000000
Q ss_pred -ccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--------C-------------C
Q psy8786 315 -AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--------M-------------G 372 (484)
Q Consensus 315 -~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--------~-------------~ 372 (484)
.......+...|+.||.+.+.+++.++.+. |++++.|+||.|.++.... . .
T Consensus 451 ~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~ 523 (660)
T 1z7e_A 451 LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE-------GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGS 523 (660)
T ss_dssp EEECCTTCTTHHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTC
T ss_pred cccCcccCCCCCcHHHHHHHHHHHHHHHHHc-------CCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCC
Confidence 000000123689999999999999887653 7999999999997765321 0 0
Q ss_pred -------------CCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
...++|+|+++++++........|+.++
T Consensus 524 ~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~n 564 (660)
T 1z7e_A 524 PIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIIN 564 (660)
T ss_dssp CEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEE
T ss_pred CcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEE
Confidence 1347889998888876554445666653
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=115.28 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=101.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHHH--h-c-----CCCCc----cHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVLK--D-R-----ASTVP----FAIQAEKTI 248 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l~--~-~-----~~~~~----~~~~~~~~~ 248 (484)
.+|++|||||+|+||++++++|+++ |++|++++|+.+ +.+...+.+. . + ..... ...+.+..+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~ 80 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFI 80 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhC-CCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHH
Confidence 4578999999999999999999998 888888877421 2222222233 1 1 11111 234567789
Q ss_pred HhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCC-ChhhH
Q psy8786 249 LTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP-DSAYA 327 (484)
Q Consensus 249 ~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~ 327 (484)
++|+.++..+++++... ...++|++||...++...... + .+. .. ......+ ...|+
T Consensus 81 ~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~vyg~~~~~~-~-------~E~-----------~~--~~~~~~p~~~~Y~ 137 (321)
T 1e6u_A 81 YQNMMIESNIIHAAHQN--DVNKLLFLGSSCIYPKLAKQP-M-------AES-----------EL--LQGTLEPTNEPYA 137 (321)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCEEEEECCGGGSCTTCCSS-B-------CGG-----------GT--TSSCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCeEEEEccHHHcCCCCCCC-c-------Ccc-----------cc--ccCCCCCCCCccH
Confidence 99999999999988663 236999999977653221100 0 000 00 0000111 15899
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 328 VSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 328 aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
.||.+.+.+++.++.+. |++++.|+||.|..+..
T Consensus 138 ~sK~~~E~~~~~~~~~~-------~~~~~ilrp~~v~G~~~ 171 (321)
T 1e6u_A 138 IAKIAGIKLCESYNRQY-------GRDYRSVMPTNLYGPHD 171 (321)
T ss_dssp HHHHHHHHHHHHHHHHH-------CCEEEEEEECEEESTTC
T ss_pred HHHHHHHHHHHHHHHHh-------CCCEEEEEeCCcCCcCC
Confidence 99999999999887653 79999999999876643
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=116.61 Aligned_cols=174 Identities=17% Similarity=0.011 Sum_probs=104.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh--------------------HHHHHHHHHh--c-----
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK--------------------GAEAVQVLKD--R----- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~--------------------~~~~~~~l~~--~----- 234 (484)
..+++|+||||||+|+||++++++|+++ |++|++++|+.+. .+...+.+.. .
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih 95 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLER-GDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVH 95 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence 4467899999999999999999999998 8999999886321 1112222322 1
Q ss_pred --CCCCc-cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc----cccchHHHHHHHhhccccccccccc
Q psy8786 235 --ASTVP-FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL----SQITNLELKKRLRQLREPVSLRSLN 307 (484)
Q Consensus 235 --~~~~~-~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (484)
+.... ..++++ +++|+.++..+++++.+. ..++||++||.+.++ .....
T Consensus 96 ~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~--~~~~iV~~SS~~~~g~~~~~~~~~-------------------- 151 (333)
T 2q1w_A 96 TAASYKDPDDWYND--TLTNCVGGSNVVQAAKKN--NVGRFVYFQTALCYGVKPIQQPVR-------------------- 151 (333)
T ss_dssp CCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHT--TCSEEEEEEEGGGGCSCCCSSSBC--------------------
T ss_pred CceecCCCccCChH--HHHHHHHHHHHHHHHHHh--CCCEEEEECcHHHhCCCcccCCCC--------------------
Confidence 11111 223444 899999999999998763 347999999976553 11000
Q ss_pred cccCCCcccccCCCCC-hhhHHhHHHHHHHHHH-HHHHhhhhcCCCCeEE-EEEeCCc---c-----c---C--CCcc--
Q psy8786 308 ITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRI-YQKKFDCELGNQDKVI-NAVHPGY---V-----A---T--NMSS-- 369 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~~Y~aSKaAl~~lt~~-LA~ela~~~~~~gIrV-NaV~PG~---V-----~---T--~m~~-- 369 (484)
+.. .. .+. ..|+.||++.+.+++. ++ +. ..+|. +.+.||. + . . .+..
T Consensus 152 ~~E----~~----~p~~~~Y~~sK~~~E~~~~~s~~----~~---~ilR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~ 216 (333)
T 2q1w_A 152 LDH----PR----NPANSSYAISKSANEDYLEYSGL----DF---VTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTK 216 (333)
T ss_dssp TTS----CC----CCTTCHHHHHHHHHHHHHHHHTC----CE---EEEEESEEESTTCCSSHHHHHHHHHHTTCCCEEEE
T ss_pred cCC----CC----CCCCCchHHHHHHHHHHHHhhhC----Ce---EEEeeceEECcCCcCcHHHHHHHHHHcCCeeeCCC
Confidence 000 00 123 6899999999999976 54 11 02443 3344441 0 0 0 0000
Q ss_pred -CCCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 370 -FMGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 370 -~~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
......++|+|+++.+++.... |+.+
T Consensus 217 ~~~~~i~v~Dva~ai~~~~~~~~----g~~~ 243 (333)
T 2q1w_A 217 ARRDFVFVKDLARATVRAVDGVG----HGAY 243 (333)
T ss_dssp CEECEEEHHHHHHHHHHHHTTCC----CEEE
T ss_pred ceEeeEEHHHHHHHHHHHHhcCC----CCEE
Confidence 0012578899999988886543 5555
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=115.60 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=99.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh------------------HHHHHHHHHh-c-------CCCCc-
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK------------------GAEAVQVLKD-R-------ASTVP- 239 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~------------------~~~~~~~l~~-~-------~~~~~- 239 (484)
|+||||||+|+||++++++|+++ |++|++++|+... .+...+.+.. . .....
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~ 80 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDE-GLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLV 80 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCH
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCc
Confidence 57999999999999999999998 8999998875321 1122222321 1 11111
Q ss_pred --cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccc
Q psy8786 240 --FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHV 317 (484)
Q Consensus 240 --~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (484)
..++++..+++|+.++..+++++... ..+++|++||...+...... .+...
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~Ss~~~~~~~~~~-------------------~~~E~------ 133 (330)
T 2c20_A 81 GVSMEKPLQYYNNNVYGALCLLEVMDEF--KVDKFIFSSTAATYGEVDVD-------------------LITEE------ 133 (330)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEECCGGGGCSCSSS-------------------SBCTT------
T ss_pred cccccCHHHHHHHHhHHHHHHHHHHHHc--CCCEEEEeCCceeeCCCCCC-------------------CCCcC------
Confidence 12467788999999999999987542 23699999997665322110 00000
Q ss_pred cCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 318 ~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
....+...|+.||++.+.+++.++.++ |++++.|+||.|..+.
T Consensus 134 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 134 TMTNPTNTYGETKLAIEKMLHWYSQAS-------NLRYKIFRYFNVAGAT 176 (330)
T ss_dssp SCCCCSSHHHHHHHHHHHHHHHHHHTS-------SCEEEEEECSEEECCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-------CCcEEEEecCcccCCC
Confidence 001123789999999999998877643 7999999999887653
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=112.35 Aligned_cols=162 Identities=12% Similarity=0.014 Sum_probs=106.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-------hhHHHHHHHHHh---c-----CCCCc---cHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-------KKGAEAVQVLKD---R-----ASTVP---FAIQAEKTIL 249 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-------~~~~~~~~~l~~---~-----~~~~~---~~~~~~~~~~ 249 (484)
+++||||+|+||++++++|+ + |++|++++|+. .+.+...+.+.. + ..... ..++++..++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~ 79 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-P-VGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQL 79 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-T-TSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHH
T ss_pred eEEEECCCCHHHHHHHHHhh-c-CCeEEEeccccccccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHH
Confidence 59999999999999999999 7 89999999864 122223333332 1 11111 1245678899
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHh
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVS 329 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aS 329 (484)
+|+.++.++++++... +.++|++||...+...... .... . ....+...|+.+
T Consensus 80 ~n~~~~~~l~~a~~~~---~~~~v~~SS~~vy~~~~~~-------------------~~~E----~--~~~~p~~~Y~~s 131 (299)
T 1n2s_A 80 LNATSVEAIAKAANET---GAWVVHYSTDYVFPGTGDI-------------------PWQE----T--DATSPLNVYGKT 131 (299)
T ss_dssp HHTHHHHHHHHHHTTT---TCEEEEEEEGGGSCCCTTC-------------------CBCT----T--SCCCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCcEEEEecccEEeCCCCC-------------------CCCC----C--CCCCCccHHHHH
Confidence 9999999999988642 3589999998764322110 0000 0 001123789999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------------------CCCCHHhHHHHHHHHH
Q psy8786 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----------------------GNVNIFDDSSTFNAFE 387 (484)
Q Consensus 330 KaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----------------------~~~~peevA~~~~~L~ 387 (484)
|++.+.+++.++ .+++.++||.+..+..... ....++|+|+++.+++
T Consensus 132 K~~~E~~~~~~~-----------~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 200 (299)
T 1n2s_A 132 KLAGEKALQDNC-----------PKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAI 200 (299)
T ss_dssp HHHHHHHHHHHC-----------SSEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----------CCeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHH
Confidence 999999886532 2678899999977643211 0024788888888777
Q ss_pred hhh
Q psy8786 388 RVI 390 (484)
Q Consensus 388 s~~ 390 (484)
...
T Consensus 201 ~~~ 203 (299)
T 1n2s_A 201 RVA 203 (299)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.6e-11 Score=116.53 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=99.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhc-CCCeEEEEecCchhH----------------HHHHHHHHh-c------CCCC-c-
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKG----------------AEAVQVLKD-R------ASTV-P- 239 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~-gga~Vvl~~R~~~~~----------------~~~~~~l~~-~------~~~~-~- 239 (484)
+|+++||||+|+||++++++|+++ +|++|++++|+.... +...+.+.. . .... .
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~ 81 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSA 81 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHH
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCC
Confidence 367999999999999999999987 567899998864321 112222221 1 1111 1
Q ss_pred -cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 240 -FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 240 -~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
...+.+..+++|+.++..+++++.+. ..+++|++||...+....... .... . .
T Consensus 82 ~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~v~~SS~~~~~~~~~~~------------------~~~e----~--~ 135 (312)
T 2yy7_A 82 TAEKNPAFAWDLNMNSLFHVLNLAKAK--KIKKIFWPSSIAVFGPTTPKE------------------NTPQ----Y--T 135 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTT--SCSEEECCEEGGGCCTTSCSS------------------SBCS----S--C
T ss_pred chhhChHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeccHHHhCCCCCCC------------------Cccc----c--C
Confidence 12456778999999999999988652 236999999987653321100 0000 0 0
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...+...|+.||++.+.+++.++.++ |++++.++||.+..+
T Consensus 136 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~lrp~~v~g~ 176 (312)
T 2yy7_A 136 IMEPSTVYGISKQAGERWCEYYHNIY-------GVDVRSIRYPGLISW 176 (312)
T ss_dssp BCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEECEEECEEECS
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhc-------CCcEEEEeCCeEecC
Confidence 01123789999999999998887653 799999999988764
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-11 Score=116.15 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=105.2
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----------hHHHHHHHHHh---c-----CCCCc---cHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----------KGAEAVQVLKD---R-----ASTVP---FAIQAEK 246 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----------~~~~~~~~l~~---~-----~~~~~---~~~~~~~ 246 (484)
+++||||+|+||++++++|+ + |++|++++|+.+ +.+...+.+.. + ..... ..++++.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~ 79 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-E-RHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEK 79 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-T-TSCEEEEESSSCCTTCEECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHH
T ss_pred EEEEECCCChhHHHHHHHHh-c-CCeEEEecCCCcCCCCceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCHHH
Confidence 49999999999999999999 4 789999988641 12222222322 1 11111 1357888
Q ss_pred HHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhh
Q psy8786 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAY 326 (484)
Q Consensus 247 ~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (484)
.+++|+.++..+++++.+ .+++||++||...+...... +.. . ....+...|
T Consensus 80 ~~~~n~~~~~~l~~~~~~---~~~~iv~~SS~~~~~~~~~~--------------------~~e----~--~~~~~~~~Y 130 (273)
T 2ggs_A 80 AYKINAEAVRHIVRAGKV---IDSYIVHISTDYVFDGEKGN--------------------YKE----E--DIPNPINYY 130 (273)
T ss_dssp HHHHHTHHHHHHHHHHHH---TTCEEEEEEEGGGSCSSSCS--------------------BCT----T--SCCCCSSHH
T ss_pred HHHHhHHHHHHHHHHHHH---hCCeEEEEecceeEcCCCCC--------------------cCC----C--CCCCCCCHH
Confidence 999999999999999875 24699999998764321100 000 0 001123789
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-----------------CCCCCCHHhHHHHHHHHHhh
Q psy8786 327 AVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS-----------------FMGNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 327 ~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~-----------------~~~~~~peevA~~~~~L~s~ 389 (484)
+.||++++.+++. +... .||++.|. | .+++.. ......++|+|+.+.++++.
T Consensus 131 ~~sK~~~e~~~~~----~~~~----~iR~~~v~-G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~ 199 (273)
T 2ggs_A 131 GLSKLLGETFALQ----DDSL----IIRTSGIF-R--NKGFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLEL 199 (273)
T ss_dssp HHHHHHHHHHHCC----TTCE----EEEECCCB-S--SSSHHHHHHHHHHTTCCEEEESCEECCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCeE----EEeccccc-c--ccHHHHHHHHHHHcCCCEEeecCCCCceEHHHHHHHHHHHHhc
Confidence 9999999999976 2212 57777776 4 233211 01236799999999988865
Q ss_pred h
Q psy8786 390 I 390 (484)
Q Consensus 390 ~ 390 (484)
.
T Consensus 200 ~ 200 (273)
T 2ggs_A 200 R 200 (273)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=116.21 Aligned_cols=143 Identities=17% Similarity=0.070 Sum_probs=91.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH-----HH------------------------HHHHHHh---c
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG-----AE------------------------AVQVLKD---R 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~-----~~------------------------~~~~l~~---~ 234 (484)
|++|||||+|+||++++++|+++ |++|++++|+.+.. ++ ..+.+.. +
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999998 89999999875421 11 1111111 1
Q ss_pred -----CC---CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -----AS---TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -----~~---~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
.. .....++++..+++|+.++.++++++.+...+ .++||++||.+.++.....
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~------------------ 142 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI------------------ 142 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS------------------
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCC------------------
Confidence 00 11122456778899999999999999876421 3799999997664322100
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCc
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGY 362 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~ 362 (484)
.+.. . ....+...|+.||++++.+++.++.++ |+.+..+.|..
T Consensus 143 -~~~E----~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~~r~~~ 185 (372)
T 1db3_A 143 -PQKE----T--TPFYPRSPYAVAKLYAYWITVNYRESY-------GMYACNGILFN 185 (372)
T ss_dssp -SBCT----T--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECC
T ss_pred -CCCc----c--CCCCCCChHHHHHHHHHHHHHHHHHHh-------CCCeEEEEECC
Confidence 0000 0 001123789999999999999998765 55555555433
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=109.34 Aligned_cols=172 Identities=13% Similarity=0.019 Sum_probs=102.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----------------HHHhc-----CCCCccHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ----------------VLKDR-----ASTVPFAIQAEK 246 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~----------------~l~~~-----~~~~~~~~~~~~ 246 (484)
+++||||+|+||++++++|+++ |++|++++|+.++.++... .+... ....... ..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~---~~ 77 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRR-GHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWG---SG 77 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT---SS
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCC---cc
Confidence 4999999999999999999999 8999999999876553211 00000 0000000 01
Q ss_pred HHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChh
Q psy8786 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325 (484)
Q Consensus 247 ~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (484)
...+|+.++..+++++.. .++++|++||.++.. .+..... .... ...+.+...
T Consensus 78 ~~~~n~~~~~~l~~a~~~---~~~~~v~~SS~~~~~~~~~~~~~-----------------~~~~------~~~~~~~~~ 131 (224)
T 3h2s_A 78 RGYLHLDFATHLVSLLRN---SDTLAVFILGSASLAMPGADHPM-----------------ILDF------PESAASQPW 131 (224)
T ss_dssp CTHHHHHHHHHHHHTCTT---CCCEEEEECCGGGSBCTTCSSCG-----------------GGGC------CGGGGGSTT
T ss_pred hhhHHHHHHHHHHHHHHH---cCCcEEEEecceeeccCCCCccc-----------------cccC------CCCCccchh
Confidence 134566666555444322 237999999976632 2111000 0000 000111368
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---------------CCCCCHHhHHHHHHHHHhhh
Q psy8786 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF---------------MGNVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 326 Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~---------------~~~~~peevA~~~~~L~s~~ 390 (484)
|+.+|++.+.+. ++.. ..|++++.|+||.+.++.... .....++|+|+.+++++...
T Consensus 132 y~~sK~~~e~~~-----~~~~---~~~i~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~ 203 (224)
T 3h2s_A 132 YDGALYQYYEYQ-----FLQM---NANVNWIGISPSEAFPSGPATSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEHP 203 (224)
T ss_dssp HHHHHHHHHHHH-----HHTT---CTTSCEEEEEECSBCCCCCCCCEEEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHH-----HHHh---cCCCcEEEEcCccccCCCcccCceecccccccCCCCCceEeHHHHHHHHHHHhcCc
Confidence 999999988542 2221 138999999999998762111 01278999999999888543
Q ss_pred ccccccccc
Q psy8786 391 SHFLIGQQI 399 (484)
Q Consensus 391 a~~itG~~i 399 (484)
...|+.+
T Consensus 204 --~~~g~~~ 210 (224)
T 3h2s_A 204 --TAIRDRI 210 (224)
T ss_dssp --CCTTSEE
T ss_pred --cccCCEE
Confidence 2345544
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=116.66 Aligned_cols=144 Identities=14% Similarity=0.010 Sum_probs=97.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----H-------------------------HHHHHHHHh---
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----G-------------------------AEAVQVLKD--- 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----~-------------------------~~~~~~l~~--- 233 (484)
|+||||||+|+||++++++|+++ |++|++++|+.+. + +...+.+..
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 103 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 103 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence 78999999999999999999998 8999999886431 0 111122221
Q ss_pred c-----CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 234 R-----ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 234 ~-----~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+ ..... ..++++..+++|+.++.++++++.+...+ .++||++||.+.+......
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~----------------- 166 (375)
T 1t2a_A 104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEI----------------- 166 (375)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSS-----------------
T ss_pred CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCC-----------------
Confidence 1 11111 12567788999999999999999875432 2799999998764322110
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
.+.. . ....+...|+.||++++.+++.++.++ |+.+..+.|+.+
T Consensus 167 --~~~E----~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~i~r~~~~ 210 (375)
T 1t2a_A 167 --PQKE----T--TPFYPRSPYGAAKLYAYWIVVNFREAY-------NLFAVNGILFNH 210 (375)
T ss_dssp --SBCT----T--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCE
T ss_pred --CCCc----c--CCCCCCChhHHHHHHHHHHHHHHHHHh-------CCCEEEEecccc
Confidence 0000 0 001123789999999999999988765 677777776544
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=114.85 Aligned_cols=148 Identities=17% Similarity=0.085 Sum_probs=97.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----H-------------------HHHHHHHHh---c---
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----G-------------------AEAVQVLKD---R--- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----~-------------------~~~~~~l~~---~--- 234 (484)
.+++||||||+|+||++++++|+++ |++|++++|+.+. . +...+.+.. +
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi 91 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 91 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 4688999999999999999999998 8999999987432 1 111112221 1
Q ss_pred -CCCCcc----HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -ASTVPF----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -~~~~~~----~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
...... .++++..+++|+.++.++++++.+. ...+++|++||...+...... .+.
T Consensus 92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~v~g~~~~~-------------------~~~ 151 (335)
T 1rpn_A 92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLIQAE-------------------RQD 151 (335)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSCSSS-------------------SBC
T ss_pred ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHhCCCCCC-------------------CCC
Confidence 111111 2356788999999999999988764 113799999997664322110 000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
. . ....+...|+.||++.+.+++.++.++ |+++..+.|+.+..+
T Consensus 152 E----~--~~~~p~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~i~r~~~v~Gp 195 (335)
T 1rpn_A 152 E----N--TPFYPRSPYGVAKLYGHWITVNYRESF-------GLHASSGILFNHESP 195 (335)
T ss_dssp T----T--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECCEECT
T ss_pred c----c--cCCCCCChhHHHHHHHHHHHHHHHHHc-------CCcEEEEeeCcccCC
Confidence 0 0 001123689999999999999888754 677788888766443
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-10 Score=114.41 Aligned_cols=175 Identities=14% Similarity=-0.022 Sum_probs=110.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----H-------------------------HHHHHHHHh---
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----G-------------------------AEAVQVLKD--- 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----~-------------------------~~~~~~l~~--- 233 (484)
|+||||||+|+||++++++|+++ |++|++++|+.+. + +...+.+..
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 107 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 107 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHC-CCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999998 8999999886432 0 111122221
Q ss_pred c-----CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 234 R-----ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 234 ~-----~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+ ..... ..++++..+++|+.++..+++++.+...+ .++||++||...++.....
T Consensus 108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~--------------- 172 (381)
T 1n7h_A 108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPP--------------- 172 (381)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSS---------------
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCC---------------
Confidence 1 11111 13567788999999999999999886533 3699999998764321100
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC-------c----cC-
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM-------S----SF- 370 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m-------~----~~- 370 (484)
+... ....+...|+.||++.+.+++.++.+++-.+. ..+.+|.+.||...+.+ . ..
T Consensus 173 -----~~E~------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~-~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~ 240 (381)
T 1n7h_A 173 -----QSET------TPFHPRSPYAASKCAAHWYTVNYREAYGLFAC-NGILFNHESPRRGENFVTRKITRALGRIKVGL 240 (381)
T ss_dssp -----BCTT------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEE-EEEECCEECTTSCTTSHHHHHHHHHHHHHHTS
T ss_pred -----CCCC------CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEE-EEEeCceeCCCCCCcchhHHHHHHHHHHHcCC
Confidence 0000 00112378999999999999998877632100 01234555666433210 0 00
Q ss_pred -----C-------CCCCHHhHHHHHHHHHhh
Q psy8786 371 -----M-------GNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 371 -----~-------~~~~peevA~~~~~L~s~ 389 (484)
. ....++|+|+++++++..
T Consensus 241 ~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~ 271 (381)
T 1n7h_A 241 QTKLFLGNLQASRDWGFAGDYVEAMWLMLQQ 271 (381)
T ss_dssp CCCEEESCTTCEEECEEHHHHHHHHHHHHTS
T ss_pred CCeEEeCCCCceeeeEEHHHHHHHHHHHHhC
Confidence 0 115688999998888754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=108.94 Aligned_cols=173 Identities=9% Similarity=-0.009 Sum_probs=98.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--CCCCccHHHH-------------HHHHHhhh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--ASTVPFAIQA-------------EKTILTNY 252 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--~~~~~~~~~~-------------~~~~~vN~ 252 (484)
+|+||||+|+||++++++|+++ |++|++++|+.++.++....+.-. .......+.+ .....+|+
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~ 80 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV 80 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred eEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence 5999999999999999999999 899999999987665431000000 0000000000 01133455
Q ss_pred HHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHh
Q psy8786 253 LGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVS 329 (484)
Q Consensus 253 ~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aS 329 (484)
.++..+++ .+++ .+++|++||..+. ..+...... +. ....+...|+.+
T Consensus 81 ~~~~~l~~----a~~~~~~~~~v~~SS~~~~~~~~~~~~~~-~~------------------------~~~~~~~~y~~~ 131 (221)
T 3ew7_A 81 TSLDHLIS----VLNGTVSPRLLVVGGAASLQIDEDGNTLL-ES------------------------KGLREAPYYPTA 131 (221)
T ss_dssp HHHHHHHH----HHCSCCSSEEEEECCCC--------------------------------------------CCCSCCH
T ss_pred HHHHHHHH----HHHhcCCceEEEEecceEEEcCCCCcccc-cc------------------------CCCCCHHHHHHH
Confidence 55555544 4443 4799999998773 222110000 00 001122569999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC--C--------------CCCCHHhHHHHHHHHHhhhccc
Q psy8786 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF--M--------------GNVNIFDDSSTFNAFERVISHF 393 (484)
Q Consensus 330 KaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~--~--------------~~~~peevA~~~~~L~s~~a~~ 393 (484)
|.+.+.+. .+.. ... |++++.|+||.+.++.... . ...+++|+|+.++.++... .
T Consensus 132 k~~~e~~~-~~~~--~~~----gi~~~ivrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~--~ 202 (221)
T 3ew7_A 132 RAQAKQLE-HLKS--HQA----EFSWTYISPSAMFEPGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERP--N 202 (221)
T ss_dssp HHHHHHHH-HHHT--TTT----TSCEEEEECSSCCCCC---------------------CCCHHHHHHHHHHHHHSC--S
T ss_pred HHHHHHHH-HHHh--hcc----CccEEEEeCcceecCCCccCceEeccccceecCCCCceEeHHHHHHHHHHHHhCc--c
Confidence 99998863 2221 023 8999999999998762110 0 1267899999988877443 2
Q ss_pred cccccc
Q psy8786 394 LIGQQI 399 (484)
Q Consensus 394 itG~~i 399 (484)
..|+.+
T Consensus 203 ~~g~~~ 208 (221)
T 3ew7_A 203 HLNEHF 208 (221)
T ss_dssp CTTSEE
T ss_pred ccCCEE
Confidence 335544
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-10 Score=126.19 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=98.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH----H---------------------HHHHHHh-c
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA----E---------------------AVQVLKD-R 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~----~---------------------~~~~l~~-~ 234 (484)
.+++++|+||||||+|+||++++++|+++ |++|++++|+..... + ..+.+.. .
T Consensus 6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 84 (699)
T 1z45_A 6 QSESTSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYK 84 (699)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCC
Confidence 35578899999999999999999999998 899999988643211 1 1111111 0
Q ss_pred -------CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 -------ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 -------~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
..... ..+..+..+++|+.++..+++++... ..++||++||.+.++...... . .
T Consensus 85 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~--~~~~iV~~SS~~vyg~~~~~~----------~---~- 148 (699)
T 1z45_A 85 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY--NVSKFVFSSSATVYGDATRFP----------N---M- 148 (699)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCCGGGST----------T---C-
T ss_pred CCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECcHHHhCCCcccc----------c---c-
Confidence 11111 11234567899999999998877542 247999999976543221000 0 0
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
..+.. . ....+...|+.||++++.+++.++.+. .. |+++..++|+.+..+
T Consensus 149 -~~~~E----~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~----g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 149 -IPIPE----E--CPLGPTNPYGHTKYAIENILNDLYNSD-KK----SWKFAILRYFNPIGA 198 (699)
T ss_dssp -CSBCT----T--SCCCCCSHHHHHHHHHHHHHHHHHHHS-TT----SCEEEEEEECEEECC
T ss_pred -CCccc----c--CCCCCCChHHHHHHHHHHHHHHHHHhc-cC----CCcEEEEEeccccCC
Confidence 00000 0 001123789999999999999888764 23 899999999877543
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=121.97 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=98.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcC--CCeEEEEecCchhHHHHHHHHHh-------------------c-----C
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQF--DGYIYLTARDKKKGAEAVQVLKD-------------------R-----A 235 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~g--ga~Vvl~~R~~~~~~~~~~~l~~-------------------~-----~ 235 (484)
...++|+||||||+|+||++++++|++++ |++|++++|+.+..+.. +.+.. . .
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR-RRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHH-HHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHH-HHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 45688999999999999999999999974 57999999986643211 11110 0 0
Q ss_pred CCC-c----cHH----------------------HHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchH
Q psy8786 236 STV-P----FAI----------------------QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNL 288 (484)
Q Consensus 236 ~~~-~----~~~----------------------~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~ 288 (484)
... + ..+ .++..+++|+.|+.++++++... ...++|++||...+......
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--~~~~~V~iSS~~v~~~~~~~- 224 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTT--KLKPFTYVSTADVGAAIEPS- 224 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSS--SCCCEEEEEEGGGGTTSCTT-
T ss_pred ECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEeehhhcCccCCC-
Confidence 000 0 111 22345678999999999887642 22589999997653221110
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
. ..+........ .... ........|+.||.+.+.+++.++.+. |++++.|+||.|..+
T Consensus 225 ~-------~~E~~~~~p~~-----~~~~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ivRpg~v~G~ 282 (478)
T 4dqv_A 225 A-------FTEDADIRVIS-----PTRT-VDGGWAGGYGTSKWAGEVLLREANDLC-------ALPVAVFRCGMILAD 282 (478)
T ss_dssp T-------CCSSSCHHHHC-----CEEE-CCTTSEECHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEECC
T ss_pred C-------cCCcccccccC-----cccc-cccccccchHHHHHHHHHHHHHHHHHh-------CCCeEEEECceeeCC
Confidence 0 00000000000 0000 000001459999999999998877643 799999999999654
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=113.86 Aligned_cols=144 Identities=17% Similarity=0.049 Sum_probs=92.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHH---------------------HHHHHHh---c-----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAE---------------------AVQVLKD---R----- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~---------------------~~~~l~~---~----- 234 (484)
++|||||+|+||++++++|+++ |++|++++|... ..++ ..+.+.. +
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 5999999999999999999998 899998876321 1111 1111111 0
Q ss_pred CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
..... ..++.+..+++|+.+++.+++++... ..++||++||.+.++..... .+...
T Consensus 81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~SS~~~~g~~~~~-------------------~~~e~ 139 (338)
T 1udb_A 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA--NVKNFIFSSSATVYGDNPKI-------------------PYVES 139 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCSCCSS-------------------SBCTT
T ss_pred CccCccccchhcHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEccHHHhCCCCCC-------------------CcCcc
Confidence 11001 12345678899999999999876542 23799999997654322110 00000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
. ....+...|+.||++++.+++.++.+. . |+++..+.|+.+-
T Consensus 140 ~-----~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~----~~~~~ilR~~~v~ 181 (338)
T 1udb_A 140 F-----PTGTPQSPYGKSKLMVEQILTDLQKAQ--P----DWSIALLRYFNPV 181 (338)
T ss_dssp S-----CCCCCSSHHHHHHHHHHHHHHHHHHHS--T----TCEEEEEEECEEE
T ss_pred c-----CCCCCCChHHHHHHHHHHHHHHHHHhc--C----CCceEEEeeceec
Confidence 0 000013689999999999999988763 2 6888888876553
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=110.51 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=94.0
Q ss_pred EEEEcCCchHHHHHHHHHHhc-CCCeEEEEecCch-------------hHHHHHHHHHh---c----CCCCc---cHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKK-------------KGAEAVQVLKD---R----ASTVP---FAIQA 244 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~-gga~Vvl~~R~~~-------------~~~~~~~~l~~---~----~~~~~---~~~~~ 244 (484)
||||||+|+||++++++|+++ +|++|++++|+.. +.+...+.+.. + ..... ..++.
T Consensus 2 vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~ 81 (317)
T 3ajr_A 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDP 81 (317)
T ss_dssp EEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHCH
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccccCh
Confidence 899999999999999999987 4678998887532 11222222321 1 11111 12456
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh
Q psy8786 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
+..+++|+.++.++++++... ..+++|++||...+....... ... .. ....+..
T Consensus 82 ~~~~~~n~~~~~~l~~a~~~~--~~~~~v~~SS~~~~~~~~~~~------------------~~~----e~--~~~~p~~ 135 (317)
T 3ajr_A 82 ALAYKVNMNGTYNILEAAKQH--RVEKVVIPSTIGVFGPETPKN------------------KVP----SI--TITRPRT 135 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGCCTTSCSS------------------SBC----SS--SCCCCCS
T ss_pred HHHhhhhhHHHHHHHHHHHHc--CCCEEEEecCHHHhCCCCCCC------------------Ccc----cc--ccCCCCc
Confidence 788999999999999988653 236999999987654321100 000 00 0011337
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 325 ~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
.|+.||++.+.+++.++.+. |++++.|.|+.+
T Consensus 136 ~Y~~sK~~~e~~~~~~~~~~-------~~~~~~lR~~~~ 167 (317)
T 3ajr_A 136 MFGVTKIAAELLGQYYYEKF-------GLDVRSLRYPGI 167 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEE
T ss_pred hHHHHHHHHHHHHHHHHHhc-------CCeEEEEecCcE
Confidence 89999999999998877643 899999985544
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-10 Score=116.06 Aligned_cols=154 Identities=15% Similarity=0.038 Sum_probs=109.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC-eEEEEec--CchhHHHHHHHHHhc--CCCCccHHHHHHHHHhhhHHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG-YIYLTAR--DKKKGAEAVQVLKDR--ASTVPFAIQAEKTILTNYLGLVRTCVFL 262 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga-~Vvl~~R--~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~al 262 (484)
+|+||||+|+||++++++|+++ |. .|+..+| +.+.++++.+.+..- .......+..+..+++|+.++..+++++
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~-g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~ 80 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTST-TDHHIFEVHRQTKEEELESALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDIL 80 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH-CCCEEEECCTTCCHHHHHHHHHHCSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhC-CCCEEEEECCCCCHHHHHHHhccCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999 77 9999998 344444444432111 1111112345567889999999998887
Q ss_pred HHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHH
Q psy8786 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQK 342 (484)
Q Consensus 263 lp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ 342 (484)
... ....++|++||...+. . ..|+.+|.+.+.+++.+++
T Consensus 81 ~~~-~~~~~~v~~Ss~~~~~---~-------------------------------------~~Y~~sK~~~E~~~~~~~~ 119 (369)
T 3st7_A 81 TRN-TKKPAILLSSSIQATQ---D-------------------------------------NPYGESKLQGEQLLREYAE 119 (369)
T ss_dssp TTC-SSCCEEEEEEEGGGGS---C-------------------------------------SHHHHHHHHHHHHHHHHHH
T ss_pred HHh-CCCCeEEEeCchhhcC---C-------------------------------------CCchHHHHHHHHHHHHHHH
Confidence 542 1114899999987643 1 6899999999999998877
Q ss_pred HhhhhcCCCCeEEEEEeCCcccCCCccCC---------------C------------CCCHHhHHHHHHHHHhhh
Q psy8786 343 KFDCELGNQDKVINAVHPGYVATNMSSFM---------------G------------NVNIFDDSSTFNAFERVI 390 (484)
Q Consensus 343 ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------------~------------~~~peevA~~~~~L~s~~ 390 (484)
+. |++++.++||.+..+..... . ...++|+|+.+..++...
T Consensus 120 ~~-------g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~ 187 (369)
T 3st7_A 120 EY-------GNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGT 187 (369)
T ss_dssp HH-------CCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTC
T ss_pred Hh-------CCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCC
Confidence 54 78999999998866532110 0 045788999888877543
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=114.79 Aligned_cols=182 Identities=15% Similarity=0.065 Sum_probs=113.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH---HHHHHHHHh------------c----------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG---AEAVQVLKD------------R---------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~---~~~~~~l~~------------~---------------- 234 (484)
.|+||||||+|+||++++++|.++ |++|++++|+.+.. +...+.+.. .
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 228 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGY-SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVL 228 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTT-EEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCCC
T ss_pred CCeEEEECCccchHHHHHHHHHhc-CCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCCC
Confidence 478999999999999999999877 88999999987632 222221110 0
Q ss_pred ----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 ----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
.........++..+++|+.++.++++++.. ...++|++||... +...... ..
T Consensus 229 ~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~~v~iSS~~v-G~~~~~~---------~~----- 290 (508)
T 4f6l_B 229 PENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ---HHARLIYVSTISV-GTYFDID---------TE----- 290 (508)
T ss_dssp SSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT---TTCEEEEEEESCT-TSEECTT---------CS-----
T ss_pred ccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh---CCCcEEEeCChhh-ccCCccC---------Cc-----
Confidence 001112245667788999999999998876 3579999999876 2111000 00
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------------
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------------- 371 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------------- 371 (484)
...+...... ....+...|+.||.+.+.+++.++. . |++++.++||.|..+.....
T Consensus 291 ~~~~~E~~~~---~~~~~~~~Y~~sK~~~E~~~~~~~~----~----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 359 (508)
T 4f6l_B 291 DVTFSEADVY---KGQLLTSPYTRSKFYSELKVLEAVN----N----GLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMV 359 (508)
T ss_dssp CCEECTTCSC---SSBCCCSHHHHHHHHHHHHHHHHHH----T----TCEEEEEEECCEESCSSSCCCCTTCTTCHHHHH
T ss_pred Cccccccccc---ccccCCCcHHHHHHHHHHHHHHHHH----c----CCCEEEEecceeccCCCCCcccCCcchHHHHHH
Confidence 0000000000 0001237899999999999876542 4 89999999999866543221
Q ss_pred -------C------------CCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 372 -------G------------NVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 372 -------~------------~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
. ....+|+|+++++++.... .|+.++
T Consensus 360 i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~~---~~~~~n 404 (508)
T 4f6l_B 360 MNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYH 404 (508)
T ss_dssp HHHHTTCSEEETTGGGSEEECEEHHHHHHHHHHHTTBCC---SCSEEE
T ss_pred HHHHHHcCCCCCCccCceEEEEcHHHHHHHHHHHHhCCC---CCCEEE
Confidence 0 0346899999998875543 455553
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-09 Score=103.24 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=98.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHhc-----CCCCccHHHHHHH------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKDR-----ASTVPFAIQAEKT------------ 247 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~------------ 247 (484)
+|+++||||+|+||++++++|+++ | ++|++++|+.++... +.+... .......+.+...
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~R~~~~~~~--~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLED-GTFKVRVVTRNPRKKAA--KELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-CSSEEEEEESCTTSHHH--HHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhc-CCceEEEEEcCCCCHHH--HHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 488999999999999999999998 6 899999998765421 111111 0000111222211
Q ss_pred ------HHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 248 ------ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 248 ------~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
.+.|+.++..+++++... ..++||++|+......... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~aa~~~--gv~~iv~~S~~~~~~~~~~----------------------------------~ 125 (299)
T 2wm3_A 82 YWESCSQEQEVKQGKLLADLARRL--GLHYVVYSGLENIKKLTAG----------------------------------R 125 (299)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHH--TCSEEEECCCCCHHHHTTT----------------------------------S
T ss_pred CCccccchHHHHHHHHHHHHHHHc--CCCEEEEEcCccccccCCC----------------------------------c
Confidence 223444444444443321 1368998554332221110 0
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC---------------CC-------CCCHHhH
Q psy8786 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF---------------MG-------NVNIFDD 379 (484)
Q Consensus 322 ~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~---------------~~-------~~~peev 379 (484)
+...|..+|++++.+.+. . |++++.|+||++.+++... .. ...++|+
T Consensus 126 ~~~~y~~sK~~~e~~~~~-------~----gi~~~ilrp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dv 194 (299)
T 2wm3_A 126 LAAAHFDGKGEVEEYFRD-------I----GVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDL 194 (299)
T ss_dssp CCCHHHHHHHHHHHHHHH-------H----TCCEEEEECCEEGGGGGTTTCCEECTTSSSEEECCCCTTSCEEEECGGGH
T ss_pred ccCchhhHHHHHHHHHHH-------C----CCCEEEEeecHHhhhchhhcCCcccCCCCEEEEEecCCCCccceecHHHH
Confidence 115799999999988752 3 7999999999987764221 00 0478899
Q ss_pred HHHHHHHHhhhccccccccc
Q psy8786 380 SSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 380 A~~~~~L~s~~a~~itG~~i 399 (484)
|+.+..++.....+ .|+.+
T Consensus 195 a~~~~~~l~~~~~~-~g~~~ 213 (299)
T 2wm3_A 195 GPVVLSLLKMPEKY-VGQNI 213 (299)
T ss_dssp HHHHHHHHHSHHHH-TTCEE
T ss_pred HHHHHHHHcChhhh-CCeEE
Confidence 99998877543222 45544
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=107.25 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=103.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH--------------HHHHHHHhc-----CCCCccHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA--------------EAVQVLKDR-----ASTVPFAIQAE 245 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~--------------~~~~~l~~~-----~~~~~~~~~~~ 245 (484)
++|++|||| +|+||++++++|+++ |++|++++|+.++.. ...+.+... ........+.+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~ 79 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQ-GHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEYSDE 79 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHHC--
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCCCHH
Confidence 357899999 599999999999998 899999999854311 000011110 00001124456
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChh
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSA 325 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (484)
..+++|+.++..+++++.. ....++|++||...++..... .+... ....+...
T Consensus 80 ~~~~~n~~~~~~ll~a~~~--~~~~~~v~~SS~~vyg~~~~~-------------------~~~E~------~~~~p~~~ 132 (286)
T 3gpi_A 80 HYRLSYVEGLRNTLSALEG--APLQHVFFVSSTGVYGQEVEE-------------------WLDED------TPPIAKDF 132 (286)
T ss_dssp ---CCSHHHHHHHHHHTTT--SCCCEEEEEEEGGGCCCCCSS-------------------EECTT------SCCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCEEEEEcccEEEcCCCCC-------------------CCCCC------CCCCCCCh
Confidence 7788999999998887753 123699999998665432210 00000 00113378
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------------CCCCHHhHHHHHHHHHh
Q psy8786 326 YAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----------------GNVNIFDDSSTFNAFER 388 (484)
Q Consensus 326 Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------------~~~~peevA~~~~~L~s 388 (484)
|+.||.+.+.+ +.. ++++.++||.+..+..... .....+|+|+++.+++.
T Consensus 133 Y~~sK~~~E~~-~~~------------~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 199 (286)
T 3gpi_A 133 SGKRMLEAEAL-LAA------------YSSTILRFSGIYGPGRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQ 199 (286)
T ss_dssp HHHHHHHHHHH-GGG------------SSEEEEEECEEEBTTBCHHHHHTTCGGGSCSSBCEECEEEHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-Hhc------------CCeEEEecccccCCCchhHHHHHHhcccCCCcCceeEEEEHHHHHHHHHHHHh
Confidence 99999998877 421 5678899998865532210 11567899999888876
Q ss_pred hhccccccccc
Q psy8786 389 VISHFLIGQQI 399 (484)
Q Consensus 389 ~~a~~itG~~i 399 (484)
.......|+.+
T Consensus 200 ~~~~~~~~~~~ 210 (286)
T 3gpi_A 200 QRSHAVPERLY 210 (286)
T ss_dssp HHTTSCCCSEE
T ss_pred hhccCCCCceE
Confidence 54323345544
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-09 Score=103.87 Aligned_cols=159 Identities=9% Similarity=-0.031 Sum_probs=103.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhc-CCCeEEEEecCchhHHHHHHH-HHhcCCCCccHHHHHHH----------------H
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKGAEAVQV-LKDRASTVPFAIQAEKT----------------I 248 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~-gga~Vvl~~R~~~~~~~~~~~-l~~~~~~~~~~~~~~~~----------------~ 248 (484)
|+++||||+|+||++++++|+++ +|++|++++|+.++.++.... +.-........+.+... -
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~ 80 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN 80 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence 46999999999999999999986 357899999987654432110 00000000000111110 0
Q ss_pred HhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHH
Q psy8786 249 LTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAV 328 (484)
Q Consensus 249 ~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~a 328 (484)
++|+.++.++++++... ...+||++||..... .. ..|+.
T Consensus 81 ~~n~~~~~~l~~a~~~~--~~~~~v~~Ss~~~~~--~~-------------------------------------~~y~~ 119 (287)
T 2jl1_A 81 TLLIVQHANVVKAARDA--GVKHIAYTGYAFAEE--SI-------------------------------------IPLAH 119 (287)
T ss_dssp HHHHHHHHHHHHHHHHT--TCSEEEEEEETTGGG--CC-------------------------------------STHHH
T ss_pred hHHHHHHHHHHHHHHHc--CCCEEEEECCCCCCC--CC-------------------------------------CchHH
Confidence 46888888888877542 236999999986531 10 47999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC-ccC------------------CCCCCHHhHHHHHHHHHhh
Q psy8786 329 SKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM-SSF------------------MGNVNIFDDSSTFNAFERV 389 (484)
Q Consensus 329 SKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m-~~~------------------~~~~~peevA~~~~~L~s~ 389 (484)
+|.+.+.+++. . |++++.++||.+.++. ... .....++|+|+.+..++..
T Consensus 120 ~K~~~E~~~~~-------~----~~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~ 188 (287)
T 2jl1_A 120 VHLATEYAIRT-------T----NIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELALAAATVLTE 188 (287)
T ss_dssp HHHHHHHHHHH-------T----TCCEEEEEECCBHHHHSSGGGHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHH-------c----CCCeEEEECCEeccccchhhHHHHhhCCceeccCCCCccCccCHHHHHHHHHHHhcC
Confidence 99999988742 3 8999999999886543 110 0126789999999888754
Q ss_pred hccccccccc
Q psy8786 390 ISHFLIGQQI 399 (484)
Q Consensus 390 ~a~~itG~~i 399 (484)
.. ..|+.+
T Consensus 189 ~~--~~g~~~ 196 (287)
T 2jl1_A 189 EG--HENKTY 196 (287)
T ss_dssp SS--CTTEEE
T ss_pred CC--CCCcEE
Confidence 32 245555
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-09 Score=105.84 Aligned_cols=162 Identities=12% Similarity=0.016 Sum_probs=98.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------CCC-CccHHHHHHHH---------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------AST-VPFAIQAEKTI--------- 248 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------~~~-~~~~~~~~~~~--------- 248 (484)
.+|+++||||+|+||++++++|+++ |++|++++|+.++... +.+... ... ....+.+...+
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~--~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCChhhH--HHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 4678999999999999999999998 8999999998765421 112110 011 11222233222
Q ss_pred ------HhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCc-cccccchHHHHHHHhhccccccccccccccCCCcccccCC
Q psy8786 249 ------LTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKG 320 (484)
Q Consensus 249 ------~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (484)
..|..+ .++++++... . -++||++||... .....
T Consensus 81 a~~~~~~~~~~~-~~l~~aa~~~--g~v~~~V~~SS~~~~~~~~~----------------------------------- 122 (352)
T 1xgk_A 81 TTSQAGDEIAIG-KDLADAAKRA--GTIQHYIYSSMPDHSLYGPW----------------------------------- 122 (352)
T ss_dssp CCSTTSCHHHHH-HHHHHHHHHH--SCCSEEEEEECCCGGGTSSC-----------------------------------
T ss_pred CCCCCcHHHHHH-HHHHHHHHHc--CCccEEEEeCCccccccCCC-----------------------------------
Confidence 123333 3333333221 1 259999998762 11110
Q ss_pred CCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC-----------C----------C-----CC
Q psy8786 321 WPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF-----------M----------G-----NV 374 (484)
Q Consensus 321 ~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~-----------~----------~-----~~ 374 (484)
+...|+.||++.+.+++. . |++++.|+||++-++.... . . ..
T Consensus 123 -~~~~y~~sK~~~E~~~~~-------~----gi~~~ivrpg~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 190 (352)
T 1xgk_A 123 -PAVPMWAPKFTVENYVRQ-------L----GLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWL 190 (352)
T ss_dssp -CCCTTTHHHHHHHHHHHT-------S----SSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEE
T ss_pred -CCccHHHHHHHHHHHHHH-------c----CCCEEEEecceecCCchhcccccccccccCCCceEEeeccCCCCceeeE
Confidence 125799999999988853 2 7899999999875433210 0 0 04
Q ss_pred CH-HhHHHHHHHHHhhhccccccccc
Q psy8786 375 NI-FDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 375 ~p-eevA~~~~~L~s~~a~~itG~~i 399 (484)
.+ +|+|+.+..++........|+.+
T Consensus 191 ~v~~Dva~ai~~~l~~~~~~~~g~~~ 216 (352)
T 1xgk_A 191 DAEHDVGPALLQIFKDGPQKWNGHRI 216 (352)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHTTCEE
T ss_pred ecHHHHHHHHHHHHhCCchhhCCeEE
Confidence 56 89999998887653222345544
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-09 Score=103.46 Aligned_cols=157 Identities=12% Similarity=0.018 Sum_probs=98.3
Q ss_pred EEEEcCCchHHHHHHHHHHhc-CCCeEEEEecCchhHHHHHHH-HHhcCCCCccHHHHHHH--------------HHhhh
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKGAEAVQV-LKDRASTVPFAIQAEKT--------------ILTNY 252 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~-gga~Vvl~~R~~~~~~~~~~~-l~~~~~~~~~~~~~~~~--------------~~vN~ 252 (484)
++||||+|+||++++++|+++ +|++|++++|+.++.++.... +.-........+.++.. ...|+
T Consensus 2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~ 81 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRA 81 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--------
T ss_pred EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHHH
Confidence 899999999999999999986 357899999987654432210 00000000011111111 12456
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHH
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIG 332 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaA 332 (484)
.++..+++++... ..++||++||...+. .. ..|+.+|.+
T Consensus 82 ~~~~~l~~a~~~~--~~~~~v~~Ss~~~~~--~~-------------------------------------~~y~~sK~~ 120 (286)
T 2zcu_A 82 PQHRNVINAAKAA--GVKFIAYTSLLHADT--SP-------------------------------------LGLADEHIE 120 (286)
T ss_dssp CHHHHHHHHHHHH--TCCEEEEEEETTTTT--CC-------------------------------------STTHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCEEEEECCCCCCC--Cc-------------------------------------chhHHHHHH
Confidence 6666666655432 236999999987641 11 479999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC------------------CCCCCHHhHHHHHHHHHhhhcccc
Q psy8786 333 VNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF------------------MGNVNIFDDSSTFNAFERVISHFL 394 (484)
Q Consensus 333 l~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~------------------~~~~~peevA~~~~~L~s~~a~~i 394 (484)
.+.+++. . |++++.|+||++.+++... .....++|+|+.+.+++.... .
T Consensus 121 ~e~~~~~-------~----~~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~ 187 (286)
T 2zcu_A 121 TEKMLAD-------S----GIVYTLLRNGWYSENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISEAG--H 187 (286)
T ss_dssp HHHHHHH-------H----CSEEEEEEECCBHHHHHTTHHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHHSSS--C
T ss_pred HHHHHHH-------c----CCCeEEEeChHHhhhhHHHhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhcCCC--C
Confidence 9988752 3 8999999999886543210 112688999999988876432 2
Q ss_pred ccccc
Q psy8786 395 IGQQI 399 (484)
Q Consensus 395 tG~~i 399 (484)
.|+.+
T Consensus 188 ~g~~~ 192 (286)
T 2zcu_A 188 EGKVY 192 (286)
T ss_dssp TTCEE
T ss_pred CCceE
Confidence 56655
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-07 Score=94.62 Aligned_cols=160 Identities=14% Similarity=0.012 Sum_probs=97.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc----hhHHHHHHHHHhc-----CCCCccHHHHHHHHH-----
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK----KKGAEAVQVLKDR-----ASTVPFAIQAEKTIL----- 249 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~----~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~----- 249 (484)
|+.|+|+||||+|+||++++++|+++ |++|++++|+. ++.+ ..+.+... .......+.+...++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAK-IFKALEDKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCCChhHHH-HHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 45678999999999999999999998 79999999986 2222 22233222 111122345555554
Q ss_pred --------hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCC
Q psy8786 250 --------TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW 321 (484)
Q Consensus 250 --------vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (484)
.|+.++.++++++...= .-.++|. |..+...... ....
T Consensus 86 ~Vi~~a~~~n~~~~~~l~~aa~~~g-~v~~~v~--S~~g~~~~e~-------------------------------~~~~ 131 (346)
T 3i6i_A 86 IVVSTVGGESILDQIALVKAMKAVG-TIKRFLP--SEFGHDVNRA-------------------------------DPVE 131 (346)
T ss_dssp EEEECCCGGGGGGHHHHHHHHHHHC-CCSEEEC--SCCSSCTTTC-------------------------------CCCT
T ss_pred EEEECCchhhHHHHHHHHHHHHHcC-CceEEee--cccCCCCCcc-------------------------------CcCC
Confidence 47777777777765420 0235553 3322110000 0001
Q ss_pred CChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----------------------CCCHHh
Q psy8786 322 PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-----------------------NVNIFD 378 (484)
Q Consensus 322 ~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-----------------------~~~pee 378 (484)
+...|+.+|.+++.+.+. . |++++.|+||.+...+..... ....+|
T Consensus 132 p~~~y~~sK~~~e~~l~~-------~----g~~~tivrpg~~~g~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~~~D 200 (346)
T 3i6i_A 132 PGLNMYREKRRVRQLVEE-------S----GIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTD 200 (346)
T ss_dssp THHHHHHHHHHHHHHHHH-------T----TCCBEEEECCEESSCCCSCC-----CCCCSSCEEEETTSCCCEEEECHHH
T ss_pred CcchHHHHHHHHHHHHHH-------c----CCCEEEEEecccccccCccccccccccCCCceEEEccCCCceEEecCHHH
Confidence 236899999998877652 3 799999999988664422110 157889
Q ss_pred HHHHHHHHHhhh
Q psy8786 379 DSSTFNAFERVI 390 (484)
Q Consensus 379 vA~~~~~L~s~~ 390 (484)
+|+.+..++...
T Consensus 201 va~~~~~~l~~~ 212 (346)
T 3i6i_A 201 IGKFTMKTVDDV 212 (346)
T ss_dssp HHHHHHHHTTCG
T ss_pred HHHHHHHHHhCc
Confidence 999988877543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.6e-08 Score=95.60 Aligned_cols=162 Identities=10% Similarity=0.003 Sum_probs=92.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH-HHhcCCCCccHHHHHHH----------------HHh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV-LKDRASTVPFAIQAEKT----------------ILT 250 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~-l~~~~~~~~~~~~~~~~----------------~~v 250 (484)
+||||||+|+||++++++|++++|++|++++|+.++.++.... +.-........+.++.. ...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~ 81 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSFK 81 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHHH
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccchh
Confidence 4999999999999999999987578999999987643221000 00000000001111111 113
Q ss_pred hhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhH
Q psy8786 251 NYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSK 330 (484)
Q Consensus 251 N~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSK 330 (484)
|+.++..+++++... .-++||++||...... ..|..+|
T Consensus 82 ~~~~~~~l~~aa~~~--gv~~iv~~Ss~~~~~~----------------------------------------~~~~~~~ 119 (289)
T 3e48_A 82 RIPEVENLVYAAKQS--GVAHIIFIGYYADQHN----------------------------------------NPFHMSP 119 (289)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEEEESCCSTT----------------------------------------CCSTTHH
T ss_pred hHHHHHHHHHHHHHc--CCCEEEEEcccCCCCC----------------------------------------CCCccch
Confidence 555555555544331 1269999999653211 1122222
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----------C-------CCCHHhHHHHHHHHHhhhcc
Q psy8786 331 IGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-----------G-------NVNIFDDSSTFNAFERVISH 392 (484)
Q Consensus 331 aAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-----------~-------~~~peevA~~~~~L~s~~a~ 392 (484)
... .+...+... |++++.|+||++.+++.... . ...++|+|+.+.+++.....
T Consensus 120 ~~~-----~~e~~~~~~----g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~ 190 (289)
T 3e48_A 120 YFG-----YASRLLSTS----GIDYTYVRMAMYMDPLKPYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKNPDT 190 (289)
T ss_dssp HHH-----HHHHHHHHH----CCEEEEEEECEESTTHHHHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHHHCGGG
T ss_pred hHH-----HHHHHHHHc----CCCEEEEeccccccccHHHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHHcCCCc
Confidence 111 122333344 89999999999988753110 1 15789999999988876544
Q ss_pred cccccccccc
Q psy8786 393 FLIGQQINTF 402 (484)
Q Consensus 393 ~itG~~i~~~ 402 (484)
+ |+.++..
T Consensus 191 ~--g~~~~~~ 198 (289)
T 3e48_A 191 W--GKRYLLS 198 (289)
T ss_dssp T--TCEEEEC
T ss_pred C--CceEEeC
Confidence 3 6665433
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-07 Score=90.56 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
+|+++||||+|+||++++++|+++ |++|++++|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCC
Confidence 367999999999999999999999 78999999986
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-08 Score=107.32 Aligned_cols=168 Identities=12% Similarity=-0.014 Sum_probs=108.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH--------HHHHHhc------CCC----CccHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA--------VQVLKDR------AST----VPFAIQAEKT 247 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~--------~~~l~~~------~~~----~~~~~~~~~~ 247 (484)
+++||||||+|+||++++++|+++ |++|++++|+..+.+.. .+.+... ... ....+..+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~-G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~ 225 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG-GHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGEPIFGRFNDSHKEAI 225 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC-----CCGGGHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCCccccccchhHHHHH
Confidence 679999999999999999999998 89999999986532110 0001110 110 1123456778
Q ss_pred HHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc-cccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhh
Q psy8786 248 ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL-SQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAY 326 (484)
Q Consensus 248 ~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (484)
+++|+.|+.++++++... ....++|++||...++ ..... .+... .+.+...|
T Consensus 226 ~~~Nv~gt~~ll~a~a~~-~~~~r~V~~SS~~vyg~~~~~~-------------------~~~E~-------~~~~~~~y 278 (516)
T 3oh8_A 226 RESRVLPTKFLAELVAES-TQCTTMISASAVGFYGHDRGDE-------------------ILTEE-------SESGDDFL 278 (516)
T ss_dssp HHHTHHHHHHHHHHHHHC-SSCCEEEEEEEGGGGCSEEEEE-------------------EECTT-------SCCCSSHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCEEEEeCcceEecCCCCCC-------------------ccCCC-------CCCCcChH
Confidence 999999999999975432 1236999999977654 11110 00000 01123678
Q ss_pred HHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc-----------C----C-------CCCCHHhHHHHHH
Q psy8786 327 AVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS-----------F----M-------GNVNIFDDSSTFN 384 (484)
Q Consensus 327 ~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~-----------~----~-------~~~~peevA~~~~ 384 (484)
+.+|...+.+.+. .... |++++.|+||.|..+... . . .....+|+|++++
T Consensus 279 ~~~~~~~E~~~~~----~~~~----gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~ 350 (516)
T 3oh8_A 279 AEVCRDWEHATAP----ASDA----GKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYY 350 (516)
T ss_dssp HHHHHHHHHTTHH----HHHT----TCEEEEEEECEEEBTTBSHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHhC----CCCEEEEEeeEEECCCCChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHH
Confidence 9889887766532 2334 899999999999875310 0 0 0146789999988
Q ss_pred HHHhh
Q psy8786 385 AFERV 389 (484)
Q Consensus 385 ~L~s~ 389 (484)
+++..
T Consensus 351 ~~l~~ 355 (516)
T 3oh8_A 351 RAIVD 355 (516)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 88754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-07 Score=90.70 Aligned_cols=173 Identities=10% Similarity=-0.067 Sum_probs=98.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCCCccHHHHHHHHH------hhhHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---ASTVPFAIQAEKTIL------TNYLGLVR 257 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~------vN~~g~~~ 257 (484)
++|+|||| |+||++++++|+++ |++|++++|+.++.+.....--.. ........+.+..+. ........
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~~ 83 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLAA 83 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGG-TCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHHH
T ss_pred CcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCccccccHHHHH
Confidence 67999998 99999999999999 899999999988765433210000 000000000000000 00001122
Q ss_pred HHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHH
Q psy8786 258 TCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLT 337 (484)
Q Consensus 258 l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt 337 (484)
+.+++...-..-.++|++||...++..... .+... ....+...|+.+|.+.+.++
T Consensus 84 l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~-------------------~~~E~------~~~~p~~~Y~~sK~~~E~~~ 138 (286)
T 3ius_A 84 LGDQIAARAAQFRWVGYLSTTAVYGDHDGA-------------------WVDET------TPLTPTAARGRWRVMAEQQW 138 (286)
T ss_dssp HHHHHHHTGGGCSEEEEEEEGGGGCCCTTC-------------------EECTT------SCCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCceEEEEeecceecCCCCCC-------------------CcCCC------CCCCCCCHHHHHHHHHHHHH
Confidence 333322211123699999997654322110 00000 01113368999999999888
Q ss_pred HHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------------------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 338 RIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------------------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 338 ~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------------------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
+.+ . |++++.++||.+..+...... ....+|+|++++.++.... .|+.+
T Consensus 139 ~~~------~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~ 205 (286)
T 3ius_A 139 QAV------P----NLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPD---PGAVY 205 (286)
T ss_dssp HHS------T----TCCEEEEEECEEEBTTBSSSTTSSSSCCCEEECTTCCBCEEEHHHHHHHHHHHHHSCC---TTCEE
T ss_pred Hhh------c----CCCEEEEeccceECCCchHHHHHhcCCccccCCCCcccceEEHHHHHHHHHHHHhCCC---CCCEE
Confidence 654 3 899999999998665321110 0456899999988875543 45544
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=92.61 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=31.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
|+++||||+|+||++++++|+++ |++|++++|+.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~ 38 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPL 38 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCC
T ss_pred cEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCc
Confidence 56999999999999999999998 89999999986
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-06 Score=83.77 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.|+++||||+|+||++++++|+++ |++|++++|+..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~ 39 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVREST 39 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCcc
Confidence 367999999999999999999998 789999999853
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.7e-07 Score=87.77 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=32.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
|+++||||+|+||++++++|+++ |++|++++|+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 67999999999999999999998 889999999875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-07 Score=88.29 Aligned_cols=94 Identities=13% Similarity=-0.017 Sum_probs=62.8
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH----HHHH-HHHhc------C-------CCCccHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA----EAVQ-VLKDR------A-------STVPFAIQAEKTIL 249 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~----~~~~-~l~~~------~-------~~~~~~~~~~~~~~ 249 (484)
+||||||+|.||++++++|.++ |++|+++.|+++..+ +... .+... . ....+....+..++
T Consensus 2 kILVTGatGfIG~~L~~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~ 80 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNAR-GHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLG 80 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhh
Confidence 4999999999999999999999 899999999765321 1111 11111 0 01123455667788
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccc
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHL 282 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~ 282 (484)
.|+.++..+.+++...-.+..++|+.||...++
T Consensus 81 ~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg 113 (298)
T 4b4o_A 81 SRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQ 113 (298)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEeeeeeec
Confidence 999998888876654322335677777766554
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.3e-07 Score=89.68 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=64.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCC-----CeEEEEecCchh-----------------HHHHHHHHHh---c----CC
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFD-----GYIYLTARDKKK-----------------GAEAVQVLKD---R----AS 236 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gg-----a~Vvl~~R~~~~-----------------~~~~~~~l~~---~----~~ 236 (484)
||+|+||||+|+||++++++|+++ | ++|++++|+... .+...+.+.. . ..
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~-g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~ 79 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLA-DTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYV 79 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTST-TCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-CCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEEC
Confidence 468999999999999999999998 7 889999886431 1222233332 1 00
Q ss_pred CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEE-------EEeCCCcc
Q psy8786 237 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVV-------NLSSSAGH 281 (484)
Q Consensus 237 ~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV-------~iSS~ag~ 281 (484)
......+.+..+++|+.++.++++++.+....-.++| ++||...+
T Consensus 80 a~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vy 131 (364)
T 2v6g_A 80 TWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESY 131 (364)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGT
T ss_pred CCCCcchHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhc
Confidence 0111234677889999999999999877532235676 56665443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=6.2e-06 Score=81.10 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.|+++||||+|+||++++++|+++ |++|++++|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 367999999999999999999998 89999999984
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=8e-08 Score=100.99 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=40.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+++.||+|+|||++ |||+++|+.|++. |++|+++++++.+++++..
T Consensus 261 ~~L~GKtVvVtGaG-gIG~aiA~~Laa~-GA~Viv~D~~~~~a~~Aa~ 306 (488)
T 3ond_A 261 VMIAGKVAVVAGYG-DVGKGCAAALKQA-GARVIVTEIDPICALQATM 306 (488)
T ss_dssp CCCTTCEEEEECCS-HHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred CcccCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 56899999999998 9999999999999 8899999999877665543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-06 Score=81.62 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=45.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.+++||+++||||++|||+++++.|+++ |++|++++|+.+++++..+++..
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~~~~~~~l~~~~~~ 165 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNK 165 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCHHHHHHHHHHHHh
Confidence 4578999999999999999999999999 78999999998888877776643
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.2e-05 Score=78.67 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=85.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-------eEEEEecCc--hhHHHHHHHHHh-----------------c------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-------YIYLTARDK--KKGAEAVQVLKD-----------------R------ 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-------~Vvl~~R~~--~~~~~~~~~l~~-----------------~------ 234 (484)
++++||||+|.||..++..|+++ |. .|++.+++. ++.+....++.. .
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 36999999999999999999987 54 799999874 222222222211 0
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
+.........+..+++|+.++..+++++...-....+++++|+......+.. +...
T Consensus 84 Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~-----~~~~-------------- 144 (327)
T 1y7t_A 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA-----YKNA-------------- 144 (327)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHTC--------------
T ss_pred EEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH-----HHHc--------------
Confidence 1111112334567899999999999988765213457777775431111100 0000
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcc
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYV 363 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V 363 (484)
....+...|+.||...+.+.+.+++.+ |+.+..|+|..|
T Consensus 145 --------~~~~p~~~yg~tkl~~er~~~~~a~~~-------g~~~~~vr~~~V 183 (327)
T 1y7t_A 145 --------PGLNPRNFTAMTRLDHNRAKAQLAKKT-------GTGVDRIRRMTV 183 (327)
T ss_dssp --------TTSCGGGEEECCHHHHHHHHHHHHHHH-------TCCGGGEECCEE
T ss_pred --------CCCChhheeccchHHHHHHHHHHHHHh-------CcChhheeeeEE
Confidence 000012569999999999988888765 444444454443
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.6e-05 Score=74.11 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcC----------------CchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGA----------------NKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGa----------------ssGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
+|+||+|||||| |||||+++|++|+++ |++|++++++.
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~-Ga~V~l~~~~~ 58 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR-GANVTLVSGPV 58 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT-TCEEEEEECSC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHC-CCEEEEEECCc
Confidence 478999999999 689999999999999 99999988765
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.6e-05 Score=77.94 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCC--CccHHHHHHH------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---AST--VPFAIQAEKT------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~--~~~~~~~~~~------~~vN~~ 253 (484)
.|++++||||++|||.++++.+... |++|+++++++++.+.+ +++... ... ....+.+... .-+|..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 222 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 222 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECC
Confidence 6899999999999999999999888 88999999998877665 444221 001 1111222211 113334
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ...+.++..++++|+++.++...+
T Consensus 223 g~-~~~~~~~~~l~~~G~~v~~g~~~~ 248 (333)
T 1v3u_A 223 GG-EFLNTVLSQMKDFGKIAICGAISV 248 (333)
T ss_dssp CH-HHHHHHHTTEEEEEEEEECCCCC-
T ss_pred Ch-HHHHHHHHHHhcCCEEEEEecccc
Confidence 43 235666777888899999876554
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00012 Score=71.90 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.++++|+++|||++ |||+++|+.|+++ | +|++++|+.+++++..+++.
T Consensus 124 ~~l~~k~vlV~GaG-giG~aia~~L~~~-G-~V~v~~r~~~~~~~l~~~~~ 171 (287)
T 1nvt_A 124 GRVKDKNIVIYGAG-GAARAVAFELAKD-N-NIIIANRTVEKAEALAKEIA 171 (287)
T ss_dssp CCCCSCEEEEECCS-HHHHHHHHHHTSS-S-EEEEECSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECch-HHHHHHHHHHHHC-C-CEEEEECCHHHHHHHHHHHh
Confidence 46789999999997 9999999999999 7 99999999988887776664
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4.7e-05 Score=76.92 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=61.8
Q ss_pred CC--CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc---CCC-CccHHHHHHH------HHhh
Q psy8786 185 SE--RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR---AST-VPFAIQAEKT------ILTN 251 (484)
Q Consensus 185 ~g--KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~---~~~-~~~~~~~~~~------~~vN 251 (484)
.| ++++||||++|||.++++.+... |+ +|+++++++++.+.+.+++... ... ....+..... .-+|
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~ 236 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFD 236 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEE
Confidence 57 99999999999999999988888 78 9999999987766654433221 000 1111222211 1134
Q ss_pred hHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
..|. ...+.+++.++++|+++.++...
T Consensus 237 ~~G~-~~~~~~~~~l~~~G~iv~~G~~~ 263 (357)
T 2zb4_A 237 NVGG-NISDTVISQMNENSHIILCGQIS 263 (357)
T ss_dssp SCCH-HHHHHHHHTEEEEEEEEECCCGG
T ss_pred CCCH-HHHHHHHHHhccCcEEEEECCcc
Confidence 4444 45667778888889999887644
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=5.9e-05 Score=75.17 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---C-CCccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---S-TVPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~-------~vN~~ 253 (484)
.|++++||||++|||.++++.+... |++|++++|++++.+.+.+ +.... . .....+...... -+|..
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~ 217 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK-AGAWQVINYREEDLVERLKEITGGKKVRVVYDSV 217 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH-HTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCCEEEECCCccHHHHHHHHhCCCCceEEEECC
Confidence 5899999999999999999999888 8899999999877665543 32210 0 111112221111 12333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
| -...+.++..++++|+++.+++..+
T Consensus 218 g-~~~~~~~~~~l~~~G~iv~~g~~~~ 243 (327)
T 1qor_A 218 G-RDTWERSLDCLQRRGLMVSFGNSSG 243 (327)
T ss_dssp C-GGGHHHHHHTEEEEEEEEECCCTTC
T ss_pred c-hHHHHHHHHHhcCCCEEEEEecCCC
Confidence 4 3345667778888899999887654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=6.1e-05 Score=75.81 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---C-C-CCccHHHHHHHH------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---A-S-TVPFAIQAEKTI------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~-~-~~~~~~~~~~~~------~vN~~ 253 (484)
.|+++|||||++|||+++++.+... |++|++++|++++.+.+ +++... . . .....+...... -+|..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~ 246 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELF-RSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVS 246 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHH-HHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHH-HHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECC
Confidence 6899999999999999999988887 88999999998876543 333221 0 0 111112222211 13344
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|.-...+.+++.++++|+++.+++..+
T Consensus 247 g~~~~~~~~~~~l~~~G~iv~~g~~~~ 273 (347)
T 2hcy_A 247 VSEAAIEASTRYVRANGTTVLVGMPAG 273 (347)
T ss_dssp SCHHHHHHHTTSEEEEEEEEECCCCTT
T ss_pred CcHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 444566777888888899999887653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=6.3e-05 Score=75.28 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHH------HHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~------~~vN~~g 254 (484)
.|++++||||++|||.++++.+... |++|+++++++++.+.+.+++.... ......+..... .-+|..|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 227 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG 227 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence 6899999999999999999888777 8899999999888776644443220 011111222111 1123334
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
. ...+.++..++++|+++.++...+
T Consensus 228 ~-~~~~~~~~~l~~~G~iv~~G~~~~ 252 (336)
T 4b7c_A 228 G-EILDTVLTRIAFKARIVLCGAISQ 252 (336)
T ss_dssp H-HHHHHHHTTEEEEEEEEECCCGGG
T ss_pred c-chHHHHHHHHhhCCEEEEEeeccc
Confidence 3 356677788888999998876553
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00026 Score=69.01 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=43.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.+++||+++|+|+ ||+|+++++.|++. |++|++++|+.+++++..+++.
T Consensus 115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~-G~~V~v~~R~~~~~~~la~~~~ 163 (271)
T 1nyt_A 115 FIRPGLRILLIGA-GGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFA 163 (271)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTG
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHhh
Confidence 4678999999998 69999999999999 6899999999988887776654
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00018 Score=68.55 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=33.2
Q ss_pred CCCEEEEEcC----------------CchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 185 SERVAVVTGA----------------NKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 185 ~gKvaLITGa----------------ssGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
+||+|||||| ||+||.++|++|+++ |++|++++|+..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~-Ga~V~lv~~~~~ 54 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSA-GYEVCLITTKRA 54 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHT-TCEEEEEECTTS
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence 5899999999 788999999999999 999999998753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00025 Score=71.62 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~-------~vN~~ 253 (484)
.|++++||||++|||.++++.+... |++|++++|++++.+.+ +++.... ......+...... -+|..
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 239 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMA-EKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCI 239 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH-HHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECC
Confidence 5899999999999999999988887 88999999998877665 4443210 0111112222111 12233
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|.- ..+..+..++++|+++.++...+
T Consensus 240 G~~-~~~~~~~~l~~~G~iv~~G~~~~ 265 (354)
T 2j8z_A 240 GGS-YWEKNVNCLALDGRWVLYGLMGG 265 (354)
T ss_dssp CGG-GHHHHHHHEEEEEEEEECCCTTC
T ss_pred Cch-HHHHHHHhccCCCEEEEEeccCC
Confidence 332 34556777788889988876543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00021 Score=71.39 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~-------~vN~~ 253 (484)
.|++++||||++|||.++++.+... |++|++++|++++.+.+.+ +.... ......+.+.... -+|..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~-~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~ 222 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK-LGCHHTINYSTQDFAEVVREITGGKGVDVVYDSI 222 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-HTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECC
Confidence 5899999999999999999998888 8899999999877665533 32210 0111112222211 12333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ...+.++..++++|+++.++...+
T Consensus 223 g~-~~~~~~~~~l~~~G~iv~~g~~~~ 248 (333)
T 1wly_A 223 GK-DTLQKSLDCLRPRGMCAAYGHASG 248 (333)
T ss_dssp CT-TTHHHHHHTEEEEEEEEECCCTTC
T ss_pred cH-HHHHHHHHhhccCCEEEEEecCCC
Confidence 33 445667778888899998876543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00023 Score=65.38 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCCCc-cHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---ASTVP-FAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~~~-~~~~~~~~~-------~vN~~ 253 (484)
.|++++||||++|||+++++.+... |++|++++|++++.+.+. ++... ..... ..+...... -+|..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~-~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~ 115 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS-RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 115 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH-TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH-HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECC
Confidence 6799999999999999999999888 889999999987665432 22111 00011 111111111 02223
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|. ...+.+++.++++|++|++++..
T Consensus 116 g~-~~~~~~~~~l~~~G~~v~~g~~~ 140 (198)
T 1pqw_A 116 AG-EAIQRGVQILAPGGRFIELGKKD 140 (198)
T ss_dssp CT-HHHHHHHHTEEEEEEEEECSCGG
T ss_pred ch-HHHHHHHHHhccCCEEEEEcCCC
Confidence 32 34556667777788888877644
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00049 Score=68.66 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=44.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecC---chhHHHHHHHHHhc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD---KKKGAEAVQVLKDR 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~---~~~~~~~~~~l~~~ 234 (484)
..+++||+++|+|+ ||+|++++..|+++ |+ +|++++|+ .+++++..+++...
T Consensus 149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~-Ga~~V~i~nR~~~~~~~a~~la~~~~~~ 204 (315)
T 3tnl_A 149 GHDIIGKKMTICGA-GGAATAICIQAALD-GVKEISIFNRKDDFYANAEKTVEKINSK 204 (315)
T ss_dssp TCCCTTSEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred CCCccCCEEEEECC-ChHHHHHHHHHHHC-CCCEEEEEECCCchHHHHHHHHHHhhhh
Confidence 46789999999998 69999999999999 66 89999999 77888877777653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00026 Score=70.97 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCC--CccHHHHHHH------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---AST--VPFAIQAEKT------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~--~~~~~~~~~~------~~vN~~ 253 (484)
.|++++|+||++|||.++++.+... |++|+++++++++.+.+.+++... ... ....+..... .-+|..
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENV 233 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECC
Confidence 6899999999999999999988877 889999999988776654333221 001 1122222221 112334
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|. ...+..+..++++|+++.++...
T Consensus 234 g~-~~~~~~~~~l~~~G~~v~~G~~~ 258 (345)
T 2j3h_A 234 GG-KMLDAVLVNMNMHGRIAVCGMIS 258 (345)
T ss_dssp CH-HHHHHHHTTEEEEEEEEECCCGG
T ss_pred CH-HHHHHHHHHHhcCCEEEEEcccc
Confidence 44 45667777888889999876543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00031 Score=71.59 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC-CCCccHHHHHHHHH-----hhhHHH-
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA-STVPFAIQAEKTIL-----TNYLGL- 255 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-----vN~~g~- 255 (484)
.+++++++|+|+ |+||+++++.+... |++|++++|+.++++.+.+.+.... ......++++..+. +|..+.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence 468899999999 99999999999988 8899999999887765544332110 00001222322221 222221
Q ss_pred -----HHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 256 -----VRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 256 -----~~l~~allp~l~~~grIV~iSS~ag 280 (484)
..+.+..++.|+++++||++++..+
T Consensus 241 ~~~~~~li~~~~l~~mk~gg~iV~v~~~~g 270 (369)
T 2eez_A 241 GAKAPKLVTRDMLSLMKEGAVIVDVAVDQG 270 (369)
T ss_dssp -----CCSCHHHHTTSCTTCEEEECC----
T ss_pred ccccchhHHHHHHHhhcCCCEEEEEecCCC
Confidence 2246777888888899999998654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00076 Score=68.02 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----CCCCccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----ASTVPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~-------~vN~~ 253 (484)
.|++++||||++|||.++++.+... |++|++++|++++.+.+ +++... .......+...... -+|..
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~-~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~ 247 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIV-LQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 247 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH-HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHH-HHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECC
Confidence 5899999999999999999988887 88999999998876633 333221 00111112222211 13444
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
|.- .....+..++++|+++.++..
T Consensus 248 G~~-~~~~~~~~l~~~G~iv~~g~~ 271 (351)
T 1yb5_A 248 ANV-NLSKDLSLLSHGGRVIVVGSR 271 (351)
T ss_dssp HHH-HHHHHHHHEEEEEEEEECCCC
T ss_pred ChH-HHHHHHHhccCCCEEEEEecC
Confidence 443 345567778888999988753
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00064 Score=66.80 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
.+++||+++|+|+ ||+|++++..|++. |+ +|++++|+.+++++..+++...
T Consensus 123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~ 174 (283)
T 3jyo_A 123 PNAKLDSVVQVGA-GGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNA 174 (283)
T ss_dssp TTCCCSEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 4689999999998 79999999999999 66 7999999999998888777643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00071 Score=55.99 Aligned_cols=41 Identities=20% Similarity=0.045 Sum_probs=35.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAV 228 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~ 228 (484)
+++++|+|+ |+||+++++.|.+. | .+|++++|++++.+...
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~ 46 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTS-SNYSVTVADHDLAALAVLN 46 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHH
Confidence 478999999 99999999999998 6 78999999988766543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00077 Score=65.65 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.++++|+++|+|+ ||+|++++..|++. |++|++++|+.+++++..+++..
T Consensus 115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~-G~~v~v~~R~~~~a~~l~~~~~~ 164 (272)
T 1p77_A 115 WLRPNQHVLILGA-GGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQP 164 (272)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHccc
Confidence 4678999999998 79999999999999 68999999999988888777643
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00039 Score=74.17 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+++||+++||||+ |+|+++|.+|+++ |++|++++|+.+++++..+++
T Consensus 361 ~l~~k~vlV~GaG-Gig~aia~~L~~~-G~~V~i~~R~~~~a~~la~~~ 407 (523)
T 2o7s_A 361 PLASKTVVVIGAG-GAGKALAYGAKEK-GAKVVIANRTYERALELAEAI 407 (523)
T ss_dssp -----CEEEECCS-HHHHHHHHHHHHH-CC-CEEEESSHHHHHHHHHHT
T ss_pred ccCCCEEEEECCc-HHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc
Confidence 5789999999995 9999999999999 789999999998888776655
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0003 Score=70.23 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~-------~vN~~ 253 (484)
.|++++|+||++|||.+++..+... |++|+++++++++.+.+ +++.... ......+...... -+|..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 225 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIA-KEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSV 225 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH-HHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECC
Confidence 6899999999999999999887777 88999999998877643 3333220 0111112222111 12333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ...+.++..++++|+++.++...+
T Consensus 226 g~-~~~~~~~~~l~~~G~iv~~G~~~~ 251 (334)
T 3qwb_A 226 GK-DTFEISLAALKRKGVFVSFGNASG 251 (334)
T ss_dssp GG-GGHHHHHHHEEEEEEEEECCCTTC
T ss_pred Ch-HHHHHHHHHhccCCEEEEEcCCCC
Confidence 33 345667788888999999876554
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00075 Score=67.75 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCC-ccHHHHHHHHH-------hhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STV-PFAIQAEKTIL-------TNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~~-------vN~~ 253 (484)
.|++++||||++|||.++++.+...+|++|+++++++++.+.+ +++.... ... ...+....... +|..
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 248 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECC
Confidence 6899999999999999999887775367899999998876655 3343210 011 11111222111 2333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|.-...+.++..++++|+++.++...
T Consensus 249 g~~~~~~~~~~~l~~~G~iv~~g~~~ 274 (347)
T 1jvb_A 249 NSEKTLSVYPKALAKQGKYVMVGLFG 274 (347)
T ss_dssp CCHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCCC
Confidence 33334555666667778887776543
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=64.48 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=44.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHh
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
..+++||+++|+|+ ||+|++++..|++. | .+|++++|+.+++++..+++..
T Consensus 121 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la~~~~~ 172 (281)
T 3o8q_A 121 QVLLKGATILLIGA-GGAARGVLKPLLDQ-QPASITVTNRTFAKAEQLAELVAA 172 (281)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHHHGG
T ss_pred CCCccCCEEEEECc-hHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhc
Confidence 35689999999998 69999999999998 6 4899999999998888887764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00033 Score=70.98 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---C-CCccHHHHHHHH------HhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---S-TVPFAIQAEKTI------LTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~------~vN~~g 254 (484)
.|++++|+||++|||..+++.+... |++|+++++++++.+.+.+ +.... . .....+...... -+|..|
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~-~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g 240 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVG 240 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-cCCcEEEecCChhHHHHHHHhcCCCCCEEEECCC
Confidence 5899999999999999999887777 8899999999877665433 32210 0 011111221110 122233
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
. ...+.++..++++|+++.+++..+
T Consensus 241 ~-~~~~~~~~~l~~~G~iv~~g~~~~ 265 (362)
T 2c0c_A 241 G-AMFDLAVDALATKGRLIVIGFISG 265 (362)
T ss_dssp T-HHHHHHHHHEEEEEEEEECCCGGG
T ss_pred H-HHHHHHHHHHhcCCEEEEEeCCCC
Confidence 2 355667788888899999887544
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=63.74 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=44.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~ 232 (484)
..+++||+++|+|+ ||+|++++..|++. | .+|++++|+.+++++.++++.
T Consensus 115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~ 165 (272)
T 3pwz_A 115 GEPLRNRRVLLLGA-GGAVRGALLPFLQA-GPSELVIANRDMAKALALRNELD 165 (272)
T ss_dssp CCCCTTSEEEEECC-SHHHHHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHC
T ss_pred CCCccCCEEEEECc-cHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhc
Confidence 35689999999998 69999999999998 6 589999999999888887765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00076 Score=67.06 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----CCCCccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----ASTVPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~-------~vN~~ 253 (484)
.|++++|+||++|||.+++..+... |++|+++++++++.+.+. ++... .......+...... -+|..
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 217 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAK-ALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGV 217 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECC
Confidence 5899999999999999999988877 889999999988776544 34322 01111112222111 12333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ...+.++..++++|+++.++...+
T Consensus 218 g~-~~~~~~~~~l~~~G~iv~~g~~~~ 243 (325)
T 3jyn_A 218 GQ-DTWLTSLDSVAPRGLVVSFGNASG 243 (325)
T ss_dssp CG-GGHHHHHTTEEEEEEEEECCCTTC
T ss_pred Ch-HHHHHHHHHhcCCCEEEEEecCCC
Confidence 33 345667778888999999887654
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0025 Score=63.93 Aligned_cols=92 Identities=14% Similarity=0.051 Sum_probs=60.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHHH-------HhhhHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKTI-------LTNYLG 254 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~-------~vN~~g 254 (484)
++++||+||++|||.+++..+... |++|+++++++++.+.+. ++.... ......+...... -+|..|
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g 242 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLK-DIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVT 242 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHH-HHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH-HcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCC
Confidence 489999999999999999877777 889999999988876554 343220 0111112222111 122333
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.-. .+.++..++++|+++.+++..+
T Consensus 243 ~~~-~~~~~~~l~~~G~iv~~G~~~~ 267 (349)
T 3pi7_A 243 GPL-ASAIFNAMPKRARWIIYGRLDP 267 (349)
T ss_dssp HHH-HHHHHHHSCTTCEEEECCCSCC
T ss_pred Chh-HHHHHhhhcCCCEEEEEeccCC
Confidence 322 3667788888999999986554
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00062 Score=68.62 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHHH------HhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKTI------LTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~------~vN~~g 254 (484)
.|++++|+||++|||.+++..+... |++|+++++++++.+.+. ++.... ......+...... -+|..|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g 244 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACE-RLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIG 244 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH-hcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCC
Confidence 6899999999999999999988877 889999999988876554 333220 0111112221110 112222
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
. ...+..+..++++|+++.++...+
T Consensus 245 ~-~~~~~~~~~l~~~G~iv~~g~~~~ 269 (353)
T 4dup_A 245 A-AYFERNIASLAKDGCLSIIAFLGG 269 (353)
T ss_dssp G-GGHHHHHHTEEEEEEEEECCCTTC
T ss_pred H-HHHHHHHHHhccCCEEEEEEecCC
Confidence 2 134566777888899999887655
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0021 Score=63.95 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecC---chhHHHHHHHHHhc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD---KKKGAEAVQVLKDR 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~---~~~~~~~~~~l~~~ 234 (484)
..+++||+++|+|+ ||+|++++..|++. |+ +|+++.|+ .++++++.+++...
T Consensus 143 ~~~l~gk~~lVlGA-GGaaraia~~L~~~-G~~~v~v~nRt~~~~~~a~~la~~~~~~ 198 (312)
T 3t4e_A 143 GFDMRGKTMVLLGA-GGAATAIGAQAAIE-GIKEIKLFNRKDDFFEKAVAFAKRVNEN 198 (312)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECSSTHHHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECc-CHHHHHHHHHHHHc-CCCEEEEEECCCchHHHHHHHHHHhhhc
Confidence 46789999999997 89999999999998 65 89999999 77777777777643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=64.95 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHH-------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKT-------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~-------~~vN~~ 253 (484)
.|++++|+||++|||.+++..+... |++|+++++++++.+.+.+ +.... ......+..... .-+|..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~-lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 221 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR-LGAAYVIDTSTAPLYETVMELTNGIGADAAIDSI 221 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH-HTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh-CCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECC
Confidence 6899999999999999999887777 8899999999888765543 33220 011111222111 112333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|.-... ..+..++++|+++.++...+
T Consensus 222 g~~~~~-~~~~~l~~~G~iv~~G~~~~ 247 (340)
T 3gms_A 222 GGPDGN-ELAFSLRPNGHFLTIGLLSG 247 (340)
T ss_dssp CHHHHH-HHHHTEEEEEEEEECCCTTS
T ss_pred CChhHH-HHHHHhcCCCEEEEEeecCC
Confidence 333333 34467888899999886554
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0015 Score=67.86 Aligned_cols=93 Identities=20% Similarity=0.175 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHH---------------H----HH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAI---------------Q----AE 245 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~---------------~----~~ 245 (484)
.|++|+|+||++|||.+++..+... |++|+++++++++.+.+ +++........... . .+
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAV-RALGCDLVINRAELGITDDIADDPRRVVETGRKLAK 297 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH-HHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHH-HhcCCCEEEecccccccccccccccccchhhhHHHH
Confidence 6899999999999999988777766 88999999988876654 33322100000000 0 11
Q ss_pred HHHH---------hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 246 KTIL---------TNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 246 ~~~~---------vN~~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
...+ +|..|. ...+..+..++++|+||++++..+
T Consensus 298 ~v~~~~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~ 340 (447)
T 4a0s_A 298 LVVEKAGREPDIVFEHTGR-VTFGLSVIVARRGGTVVTCGSSSG 340 (447)
T ss_dssp HHHHHHSSCCSEEEECSCH-HHHHHHHHHSCTTCEEEESCCTTC
T ss_pred HHHHHhCCCceEEEECCCc-hHHHHHHHHHhcCCEEEEEecCCC
Confidence 1111 222333 245667778888999999987665
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0019 Score=64.82 Aligned_cols=91 Identities=7% Similarity=-0.001 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCCCccHHHHHHH------HHhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---ASTVPFAIQAEKT------ILTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~~~~~~~------~~vN~~g~ 255 (484)
.|++++|+||+++||..++..+... |++|+++++++++.+.+.+ +... .......+..... .-+|..|.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~ 227 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK-MGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT 227 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH-HTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh-cCCcEEEECCccHHHHHHHhCCCCccEEEECCCc
Confidence 5899999999999999988877766 8899999999887665443 4322 1111111222211 11233444
Q ss_pred HHHHHHHHHhhhcCCEEEEEeC
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS 277 (484)
-...+.++..++++|++|.+++
T Consensus 228 ~~~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 228 DMYYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp HHHHHHHHHHEEEEEEEEESSC
T ss_pred hHHHHHHHHHhccCCEEEEECC
Confidence 4455677788888999987654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00058 Score=69.17 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc---hhHHHHHHHHHhcCC-CCccHHHHHHH-----HHhhhH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK---KKGAEAVQVLKDRAS-TVPFAIQAEKT-----ILTNYL 253 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~---~~~~~~~~~l~~~~~-~~~~~~~~~~~-----~~vN~~ 253 (484)
+++|++|+|+|| ||||..+++.+... |++|+++++++ ++.+. ++++..... .....+..... .-+|..
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~-~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~ 254 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTV-IEETKTNYYNSSNGYDKLKDSVGKFDVIIDAT 254 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHH-HHHHTCEEEECTTCSHHHHHHHCCEEEEEECC
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHH-HHHhCCceechHHHHHHHHHhCCCCCEEEECC
Confidence 356999999999 99999999988877 78999999988 66543 334432211 00111122110 012222
Q ss_pred HHHHHH-HHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTC-VFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~-~allp~l~~~grIV~iSS~ag 280 (484)
|.-..+ +.+++.++++|+||+++...+
T Consensus 255 g~~~~~~~~~~~~l~~~G~iv~~g~~~~ 282 (366)
T 2cdc_A 255 GADVNILGNVIPLLGRNGVLGLFGFSTS 282 (366)
T ss_dssp CCCTHHHHHHGGGEEEEEEEEECSCCCS
T ss_pred CChHHHHHHHHHHHhcCCEEEEEecCCC
Confidence 322244 677888888899998876543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0035 Score=61.85 Aligned_cols=49 Identities=24% Similarity=0.222 Sum_probs=42.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.++++|+++|+|+ ||+|++++..|++. |. +|++++|+.+++++..+++.
T Consensus 137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~-G~~~V~v~nR~~~ka~~la~~~~ 186 (297)
T 2egg_A 137 ITLDGKRILVIGA-GGGARGIYFSLLST-AAERIDMANRTVEKAERLVREGD 186 (297)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTT-TCSEEEEECSSHHHHHHHHHHSC
T ss_pred CCCCCCEEEEECc-HHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhh
Confidence 4678999999998 79999999999998 66 89999999988887776653
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0018 Score=64.82 Aligned_cols=93 Identities=13% Similarity=-0.031 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CC-CccHHHHHHH-----HHhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---ST-VPFAIQAEKT-----ILTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~-~~~~~~~~~~-----~~vN~~g~ 255 (484)
.|++++|+|| +|||..++..+... |++|+++++++++.+.+. ++.... .. ....+..... .-+|..|.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~-~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~ 240 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK-ELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS 240 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH-HTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH-HCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCC
Confidence 5789999999 88999999887777 889999999988776543 332210 01 1111122111 01233333
Q ss_pred HHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS~ag 280 (484)
-...+..+..++++|+++.+++..+
T Consensus 241 ~~~~~~~~~~l~~~G~~v~~g~~~~ 265 (339)
T 1rjw_A 241 KPAFQSAYNSIRRGGACVLVGLPPE 265 (339)
T ss_dssp HHHHHHHHHHEEEEEEEEECCCCSS
T ss_pred HHHHHHHHHHhhcCCEEEEecccCC
Confidence 3456677788888899998876554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0022 Score=64.38 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcC---CCC-ccHHHHHHHH-------Hhhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRA---STV-PFAIQAEKTI-------LTNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~-------~vN~ 252 (484)
.|++++|+|+ |+||..+++.+... |+ +|+++++++++.+.+. ++.... ... ...+...... -++.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~ 243 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAK-KVGADYVINPFEEDVVKEVMDITDGNGVDVFLEF 243 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHH-HHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH-HhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 7889999999 99999999877766 77 8999999987766443 343220 111 1112221110 1233
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.|.-...+.+++.++++|+++.+++..+
T Consensus 244 ~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 271 (348)
T 2d8a_A 244 SGAPKALEQGLQAVTPAGRVSLLGLYPG 271 (348)
T ss_dssp SCCHHHHHHHHHHEEEEEEEEECCCCSS
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence 3333456677788888899999876543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=57.98 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=62.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-------eEEEEecC----chhHHHHHHHHHhc---------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-------YIYLTARD----KKKGAEAVQVLKDR--------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-------~Vvl~~R~----~~~~~~~~~~l~~~--------------------- 234 (484)
++++||||+|.||..++..|+.. +. .|++.|++ +++++..+.++...
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~-~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG-DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 46999999999999999999987 53 79999998 55454433333321
Q ss_pred -------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 235 -------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 235 -------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+............+..|+.....+++.+..+-...++||++|+..
T Consensus 85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv 136 (329)
T 1b8p_A 85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA 136 (329)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence 000011112345678899998888888877532457889887644
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0038 Score=53.37 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
+++++++|+|+ |++|+.+++.|.+. |.+|++++++++..+.
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~-g~~v~~~d~~~~~~~~ 44 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRM-GHEVLAVDINEEKVNA 44 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHT-TCCCEEEESCHHHHHT
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 45678999998 99999999999998 7899999998766543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0061 Score=52.47 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+++.++|+|+ |.+|+++|+.|.++ |..|++++++++..++..+
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~-g~~V~~id~~~~~~~~~~~ 47 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAA-GKKVLAVDKSKEKIELLED 47 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH
Confidence 3467999998 66999999999998 8999999999887766543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0041 Score=65.32 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
.++++|+|+|+|+ ||+|+++++.|++.++.+|++++|+.+++++..+.
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~ 66 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP 66 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh
Confidence 5678899999997 99999999999998567899999998887766543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0063 Score=63.47 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCC-----------ccHHHH----HH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STV-----------PFAIQA----EK 246 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~-----------~~~~~~----~~ 246 (484)
.|++|+|+||+||||...+..+... |++|+++++++++.+.+ +++.... ... ...+++ +.
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~-~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~ 305 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEIC-RAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKR 305 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH-HHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHH-HhhCCcEEEecCcCcccccccccccchHHHHHHHHH
Confidence 6899999999999999888776666 88999999888876654 4443220 000 001111 11
Q ss_pred HHH----------hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 247 TIL----------TNYLGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 247 ~~~----------vN~~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
..+ ++..|. ...+.++..++++|+++.+++..+
T Consensus 306 i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~ 348 (456)
T 3krt_A 306 IRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCASTSG 348 (456)
T ss_dssp HHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESCCTTC
T ss_pred HHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEecCCC
Confidence 111 122333 455667778888899998876654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0091 Score=59.68 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCCccHHHHHHHH-------HhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STVPFAIQAEKTI-------LTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~-------~vN~~g 254 (484)
.|+++||+||++|||.+++..+... |++|+++++++++.+.+. ++.... ......+...... -+|..|
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~-~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g 236 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVK-SVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIG 236 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH-HHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH-hcCCcEEecCchhHHHHHHHHhCCCCceEEEECCc
Confidence 5899999999999999999887777 889999999988876443 333220 0111111111110 012222
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~a 279 (484)
. ...+.++..++++|+++.++...
T Consensus 237 ~-~~~~~~~~~l~~~G~iv~~G~~~ 260 (342)
T 4eye_A 237 G-PAFDDAVRTLASEGRLLVVGFAA 260 (342)
T ss_dssp ---CHHHHHHTEEEEEEEEEC----
T ss_pred h-hHHHHHHHhhcCCCEEEEEEccC
Confidence 2 13455666777788888776544
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0078 Score=60.10 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=37.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|++++|+||++|||.++++.+... |++|+++++++++.+.+.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~ 208 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAK 208 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 5889999999999999999988877 889999999988776553
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0064 Score=59.57 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=40.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~ 229 (484)
..+++||+++|.|+ ||.|++++..|++. |+ +|+++.|+.+++++.++
T Consensus 117 ~~~~~~k~vlvlGa-GGaaraia~~L~~~-G~~~v~v~nRt~~ka~~La~ 164 (282)
T 3fbt_A 117 RVEIKNNICVVLGS-GGAARAVLQYLKDN-FAKDIYVVTRNPEKTSEIYG 164 (282)
T ss_dssp TCCCTTSEEEEECS-STTHHHHHHHHHHT-TCSEEEEEESCHHHHHHHCT
T ss_pred CCCccCCEEEEECC-cHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Confidence 35678999999997 69999999999998 66 89999999988776554
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0083 Score=62.68 Aligned_cols=43 Identities=7% Similarity=0.076 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
++|+++||| +||||+++|+.|+++ |++|++++|+.+++++..+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~-G~~V~v~~R~~~~a~~la~ 44 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSA 44 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTT-TCEEEEEESSHHHHHHTTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhC-cCEEEEEECCHHHHHHHHH
Confidence 468899998 799999999999988 7899999999877665443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0028 Score=63.46 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc--CCCC-ccHHHHHHH------HHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR--ASTV-PFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~--~~~~-~~~~~~~~~------~~vN~~g 254 (484)
.|++++|+|| ||||..++..+... |+ +|+++++++++.+.+.+ +... .... ...+..... .-++..|
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~-la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g 240 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARP-YADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSG 240 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTT-TCSEEECTTTSCHHHHHHHHHSSCEEEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hHHhccCcCccCHHHHHHHhcCCCCCEEEECCC
Confidence 7889999999 99999988866666 77 89999999877654432 2111 0111 111122111 0123333
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ 278 (484)
.-...+..+..++++|+++.++..
T Consensus 241 ~~~~~~~~~~~l~~~G~iv~~g~~ 264 (343)
T 2dq4_A 241 NEAAIHQGLMALIPGGEARILGIP 264 (343)
T ss_dssp CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred CHHHHHHHHHHHhcCCEEEEEecC
Confidence 334566777888888999988764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.78 E-value=0.01 Score=58.14 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccH-HHHHHHH-----HhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFA-IQAEKTI-----LTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-----~vN~~g~~~l 258 (484)
.|++++|+||+||||.+++..+... |++|+++++++++.+.+. ++.......... +++...+ -+| .|. ..
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~ 200 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL-ALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KE 200 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH-HTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH-hcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HH
Confidence 5899999999999999999877777 889999999988766543 332110011111 2222211 112 222 23
Q ss_pred HHHHHHhhhcCCEEEEEeCCC
Q psy8786 259 CVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS~a 279 (484)
.+..+..++++|+++.++...
T Consensus 201 ~~~~~~~l~~~G~~v~~g~~~ 221 (302)
T 1iz0_A 201 VEESLGLLAHGGRLVYIGAAE 221 (302)
T ss_dssp HHHHHTTEEEEEEEEEC----
T ss_pred HHHHHHhhccCCEEEEEeCCC
Confidence 455666666777777765543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.014 Score=59.96 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=39.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCchhHHHHHHHHHh
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
|+++|+|| ||||+++++.|++++. ..|++++|+.+++++..+++..
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~ 49 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKA 49 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhh
Confidence 46899999 8999999999999833 3899999999999988887764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0031 Score=63.77 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-ccHHHHHHHH-----HhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-PFAIQAEKTI-----LTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~-----~vN~~g~~~l 258 (484)
.|++++|+|+ +|||..++..+... |++|+++++++++.+.+.+++....... ...+...... -+|..|.-..
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~ 264 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP 264 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH
Confidence 6899999996 99999999877766 8899999999888766553432210000 0111111110 0122222223
Q ss_pred HHHHHHhhhcCCEEEEEeCCCc
Q psy8786 259 CVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS~ag 280 (484)
++.+++.++++|+++++++..+
T Consensus 265 ~~~~~~~l~~~G~iv~~g~~~~ 286 (366)
T 1yqd_A 265 LLPLFGLLKSHGKLILVGAPEK 286 (366)
T ss_dssp SHHHHHHEEEEEEEEECCCCSS
T ss_pred HHHHHHHHhcCCEEEEEccCCC
Confidence 4566677788899998877543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.025 Score=56.60 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCC--CccHHHHHHHHH----------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---AST--VPFAIQAEKTIL---------- 249 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~--~~~~~~~~~~~~---------- 249 (484)
.|++|+|+|+ +|||...+..+... |++|+++++++++.+.+. ++... ... ....+.......
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK-NCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH-HTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH-HhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 5889999997 89999888766656 888999999988766543 33321 011 112222222111
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
+|..|.-...+..+..++++|+++.++.
T Consensus 245 id~~g~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCSGNEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 2233333345667778888899998764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.02 Score=55.70 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=38.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+|+++|.|+ ||.|++++..|++. |.+|+++.|+.+++++.. ++
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~-G~~v~V~nRt~~ka~~la-~~ 160 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQ-GLQVSVLNRSSRGLDFFQ-RL 160 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSCTTHHHHH-HH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH-HC
Confidence 899999997 89999999999999 589999999999988776 54
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.024 Score=57.35 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=40.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
.+++++|+|+|+ ||+|+++++.+... |++|++++|+.++++.+.+..
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~ 210 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLF 210 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhh
Confidence 357799999999 99999999999988 779999999998877765543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0063 Score=59.49 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAV 228 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~ 228 (484)
.+++||+++|+|+ ||+|++++..|++. |+ +|+++.|+.+++++..
T Consensus 113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la 158 (277)
T 3don_A 113 EGIEDAYILILGA-GGASKGIANELYKI-VRPTLTVANRTMSRFNNWS 158 (277)
T ss_dssp TTGGGCCEEEECC-SHHHHHHHHHHHTT-CCSCCEEECSCGGGGTTCC
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence 4678999999997 79999999999998 66 8999999988765543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.013 Score=59.02 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---CCCCccHHHHHHH------HHhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---ASTVPFAIQAEKT------ILTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~~~~~~~------~~vN~~g~ 255 (484)
.|++++|+||+|+||...+..+...+|++|+++++++++.+.+. ++... .......+..... .-++..|.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~ 249 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHT 249 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCc
Confidence 58899999999999987766443325889999999988766543 33322 0111111111110 01223344
Q ss_pred HHHHHHHHHhhhcCCEEEEEe
Q psy8786 256 VRTCVFLFPLLRRHARVVNLS 276 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iS 276 (484)
-...+.++..++++|+++.+.
T Consensus 250 ~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 250 DKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp HHHHHHHHHHSCTTCEEEECS
T ss_pred hhhHHHHHHHhcCCCEEEEEC
Confidence 445667778888899999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.018 Score=50.56 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
+-+..++.++|.|+ |.+|..+++.|.+. |..|++++|++++.+.
T Consensus 14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~-g~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 14 SKKQKSKYIVIFGC-GRLGSLIANLASSS-GHSVVVVDKNEYAFHR 57 (155)
T ss_dssp ---CCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCGGGGGG
T ss_pred hcccCCCcEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCHHHHHH
Confidence 34567889999996 89999999999998 7899999999887554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.029 Score=47.48 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
++.++|+|+ |.+|..+++.|.+. |.+|++++|+++..++..
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~ 44 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEK-GHDIVLIDIDKDICKKAS 44 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHH
Confidence 356889987 89999999999998 789999999987766544
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.033 Score=55.92 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=31.2
Q ss_pred CC-CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 185 SE-RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 185 ~g-KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
.| ++|+|+||+|++|...+...... |++|++++++.++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~ 204 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPN 204 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTT
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccc
Confidence 57 89999999999999887765555 8899888877665
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.016 Score=50.24 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=39.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+++++|.|+ |++|+++++.|.+. |.+|++++|+.++.++..+++.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~-g~~v~v~~r~~~~~~~~a~~~~ 65 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYP-QYKVTVAGRNIDHVRAFAEKYE 65 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTT-TCEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHHHHhC
Confidence 789999996 99999999999987 7789999999998887766654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.049 Score=54.63 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhcC----CCCccHHHHHHHHH----------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRA----STVPFAIQAEKTIL---------- 249 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~---------- 249 (484)
.|++|||+|+ ||+|...+...... |++ |+++++++++.+.+.+ +.... ......+++...+.
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv 255 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKE-ICPEVVTHKVERLSAEESAKKIVESFGGIEPAV 255 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHH-HCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hchhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence 5789999998 99999887655555 776 9999999888765543 32110 11112233332221
Q ss_pred -hhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 250 -TNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 250 -vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
.+..|.-...+.++..++++|+++.++...
T Consensus 256 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~ 286 (363)
T 3m6i_A 256 ALECTGVESSIAAAIWAVKFGGKVFVIGVGK 286 (363)
T ss_dssp EEECSCCHHHHHHHHHHSCTTCEEEECCCCC
T ss_pred EEECCCChHHHHHHHHHhcCCCEEEEEccCC
Confidence 122333335566777888899999886533
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.015 Score=57.83 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---C-CCccHHHHHHHH-----HhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---S-TVPFAIQAEKTI-----LTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~-----~vN~~g~ 255 (484)
.|+++||+|+ +|||...+..+... |++|+++++++++.+.+ +++.... . .....+...... -++..+.
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~ 242 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAM-GLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVS 242 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHT-TCEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHH-HHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCC
Confidence 6889999997 89999888766666 88999999998877644 3333220 0 111112222110 0122233
Q ss_pred HHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS~ag 280 (484)
-...+.++..++++|+++.++...+
T Consensus 243 ~~~~~~~~~~l~~~G~iv~~G~~~~ 267 (340)
T 3s2e_A 243 PKAFSQAIGMVRRGGTIALNGLPPG 267 (340)
T ss_dssp HHHHHHHHHHEEEEEEEEECSCCSS
T ss_pred HHHHHHHHHHhccCCEEEEeCCCCC
Confidence 3456677788888999998865543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.032 Score=56.80 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
.+.|++++|+|+ |+||+++|+.+... |++|++++|+.++++.+.+
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGM-GATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHH
Confidence 578999999998 99999999999988 7899999999887766544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.039 Score=50.74 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=36.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
+++|+||+|.+|.++++.|++. |.+|++++|++++.++..+.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH
Confidence 4889999999999999999998 78999999998876665443
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.035 Score=55.32 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcC--CCeEEEEecCchhHHHHHHHHHhcCCCCccH-HHHHHHHH--------hhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQF--DGYIYLTARDKKKGAEAVQVLKDRASTVPFA-IQAEKTIL--------TNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~g--ga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~--------vN~~ 253 (484)
.|++|+|+|+ ++||...+.. ++.- |++|+++++++++.+.+. ++.......... +++...+. ++..
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiql-ak~~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~ 246 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQI-LKALMKNITIVGISRSKKHRDFAL-ELGADYVSEMKDAESLINKLTDGLGASIAIDLV 246 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHH-HHHHCTTCEEEEECSCHHHHHHHH-HHTCSEEECHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHHHH-HhCCCEEeccccchHHHHHhhcCCCccEEEECC
Confidence 6899999999 8999987765 4443 678999999988766543 343211111111 11111110 1122
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
|.-...+.++..++++|+++.++..
T Consensus 247 g~~~~~~~~~~~l~~~G~iv~~g~~ 271 (344)
T 2h6e_A 247 GTEETTYNLGKLLAQEGAIILVGME 271 (344)
T ss_dssp CCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred CChHHHHHHHHHhhcCCEEEEeCCC
Confidence 2223455666777778888877654
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.1 Score=51.33 Aligned_cols=87 Identities=9% Similarity=-0.105 Sum_probs=55.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC--eEEEEec--CchhHHHHHHHHHhc---------------------------CC
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG--YIYLTAR--DKKKGAEAVQVLKDR---------------------------AS 236 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga--~Vvl~~R--~~~~~~~~~~~l~~~---------------------------~~ 236 (484)
+++||||+|.+|..++..|+.. +. .+++.|+ ++++++....++... +.
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~-~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALR-DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 4899999999999999999986 43 5888999 776554433333321 00
Q ss_pred CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEe
Q psy8786 237 TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLS 276 (484)
Q Consensus 237 ~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iS 276 (484)
...........+..|+.+...+++++..+ ...+.|+++|
T Consensus 81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~S 119 (303)
T 1o6z_A 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTS 119 (303)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence 00011123355788988888888877664 3345555543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.03 Score=56.52 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCC------ccHHHHHHH------HHhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------PFAIQAEKT------ILTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~------~~~~~~~~~------~~vN 251 (484)
.|++|||+|+ ++||...+..+... |+ +|+++++++++.+.+. ++....... ...+..... .-+|
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 268 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAK-VFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 268 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH-HTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH-HhCCceEEeccccchhHHHHHHHHhCCCCCEEEE
Confidence 5889999996 89999888766666 77 7999999988876543 333210000 111222111 1123
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS~a 279 (484)
..|.-...+.++..++++ |+++.++...
T Consensus 269 ~~g~~~~~~~~~~~l~~~~G~iv~~G~~~ 297 (374)
T 1cdo_A 269 CVGNVGVMRNALESCLKGWGVSVLVGWTD 297 (374)
T ss_dssp CSCCHHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred CCCCHHHHHHHHHHhhcCCcEEEEEcCCC
Confidence 334334566778888888 9999887654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.024 Score=57.27 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCC---Cc-cHHHHHH---------HHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAST---VP-FAIQAEK---------TILT 250 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~---~~-~~~~~~~---------~~~v 250 (484)
.|++|||+|+ |++|...+...... |+ +|+++++++++.+. ++++...... .. ..+.... ..-.
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~-a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi 258 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLA-GATTVILSTRQATKRRL-AEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVI 258 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCHHHHHH-HHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHH-HHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence 5889999998 89999877765555 77 89999998877653 3444322111 11 1111111 0012
Q ss_pred hhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 251 NYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 251 N~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+..|.-...+.++..++++|+++.++...
T Consensus 259 d~~G~~~~~~~~~~~l~~~G~vv~~G~~~ 287 (370)
T 4ej6_A 259 ECAGVAETVKQSTRLAKAGGTVVILGVLP 287 (370)
T ss_dssp ECSCCHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence 23333345566777888889998876544
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.043 Score=56.31 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~ 232 (484)
++.||+++|.|+ |+||+.+++.+... |. +|++++|+.+++++..+++.
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~v~~r~~~ra~~la~~~g 212 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLG 212 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHT
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcC
Confidence 468999999998 99999999999988 66 89999999888766666553
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.036 Score=55.84 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCC------ccHHHHHHH------HHhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------PFAIQAEKT------ILTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~------~~~~~~~~~------~~vN 251 (484)
.|++|||+|+ ++||...+..+... |+ +|+++++++++.+.+. ++....... ...+..... .-++
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid 266 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVA-GASRIIGVDINKDKFARAK-EFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 266 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH-HHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH-HcCCceEeccccccccHHHHHHHHhCCCCCEEEE
Confidence 5889999996 89999888766666 77 7999999988876543 443221101 111222211 1123
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS~a 279 (484)
..|.-...+.++..++++ |+++.++...
T Consensus 267 ~~g~~~~~~~~~~~l~~~~G~iv~~G~~~ 295 (373)
T 2fzw_A 267 CIGNVKVMRAALEACHKGWGVSVVVGVAA 295 (373)
T ss_dssp CSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred CCCcHHHHHHHHHhhccCCcEEEEEecCC
Confidence 333334566778888888 9999887543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.026 Score=57.22 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHhcCCCCcc---HHHHHHHHH-----------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKDRASTVPF---AIQAEKTIL----------- 249 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~----------- 249 (484)
.|++|||+| +||+|...+..+... | ++|+++++++++.+.+. ++......... .+++...+.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvv 271 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAE-EIGADLTLNRRETSVEERRKAIMDITHGRGADFI 271 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHH-HTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHH-HcCCcEEEeccccCcchHHHHHHHHhCCCCCcEE
Confidence 588999999 899999888766655 7 59999999988766543 33221111111 222222111
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+|..|.-...+..+..++++|+++.++...
T Consensus 272 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~ 301 (380)
T 1vj0_A 272 LEATGDSRALLEGSELLRRGGFYSVAGVAV 301 (380)
T ss_dssp EECSSCTTHHHHHHHHEEEEEEEEECCCCS
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEecCC
Confidence 112222234555667777788888776544
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.042 Score=54.85 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCC--CccHHHHHHHH-------HhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAST--VPFAIQAEKTI-------LTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~-------~vN~~g~ 255 (484)
.|+++||+||++|||.+++..+... |++|+++ +++++.+.+ +++...... ....+...... -+|..|.
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~-~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~ 226 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYV-RDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG 226 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHH-HHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHH-HHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc
Confidence 6899999999999999999887777 8899988 777765543 334322100 00111111110 0122232
Q ss_pred HHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS~a 279 (484)
...+.++..++++|+++.++...
T Consensus 227 -~~~~~~~~~l~~~G~iv~~g~~~ 249 (343)
T 3gaz_A 227 -PVLDASFSAVKRFGHVVSCLGWG 249 (343)
T ss_dssp -HHHHHHHHHEEEEEEEEESCCCS
T ss_pred -HHHHHHHHHHhcCCeEEEEcccC
Confidence 34556667778888888776543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.01 Score=58.65 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHH-HHHH-----HHhhhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQ-AEKT-----ILTNYLGLVRT 258 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-----~~vN~~g~~~l 258 (484)
.|++++|+||+++||...+..+... |++|+++++++ + .+..+++..........++ +... .-.+..|.-.+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~~~-~-~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~~ 228 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTASKR-N-HAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVG 228 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEECHH-H-HHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeccc-h-HHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHHH
Confidence 6899999999999999888877666 88998887543 3 3344444322100000111 1111 11233333333
Q ss_pred HHHHHHhhhcCCEEEEEeC
Q psy8786 259 CVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 259 ~~allp~l~~~grIV~iSS 277 (484)
+..+..++++|+++.++.
T Consensus 229 -~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 229 -IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp -HHHGGGEEEEEEEEECCS
T ss_pred -HHHHHhccCCCEEEEeCC
Confidence 667788888999998754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.70 E-value=0.037 Score=55.82 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCC------ccHHHHHHH------HHhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------PFAIQAEKT------ILTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~------~~~~~~~~~------~~vN 251 (484)
.|++|+|+|+ ++||..++..+... |+ +|+++++++++.+.+. ++....... ...+..... .-++
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAK-EVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH-HhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 5889999995 89999888766666 77 7999999988876543 333210001 111222111 1123
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS~a 279 (484)
..|.-...+.++..++++ |+++.++...
T Consensus 268 ~~g~~~~~~~~~~~l~~~~G~iv~~G~~~ 296 (374)
T 2jhf_A 268 VIGRLDTMVTALSCCQEAYGVSVIVGVPP 296 (374)
T ss_dssp CSCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred CCCCHHHHHHHHHHhhcCCcEEEEeccCC
Confidence 334334566777888888 9999886543
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.053 Score=54.98 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+++||+++|.|. |.+|..+|+.|.+. |++|++.+++.+++++..+++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~-GakVvv~D~~~~~l~~~a~~~ 216 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTE-GAKLVVTDVNKAAVSAAVAEE 216 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHc
Confidence 689999999997 67999999999998 889999999988777666654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.043 Score=54.96 Aligned_cols=90 Identities=11% Similarity=-0.029 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCCcc---HHHH-HHHHH---------h
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPF---AIQA-EKTIL---------T 250 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~~---------v 250 (484)
.|++|+|+|+ |+||...+...... |+ +|+++++++++.+.+. ++......... .+++ +...+ +
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK-EIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH-HTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH-HhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 5789999996 89999887765555 77 8999999988765443 33321111111 1222 11111 1
Q ss_pred hhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 251 NYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 251 N~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
+..|.-...+..+..++++|+++.++.
T Consensus 248 d~~g~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTGAEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp ECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ECCCChHHHHHHHHHhcCCCEEEEEec
Confidence 222323345666777888899988764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.034 Score=56.16 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---C-CCccHHHHHHH------HHhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---S-TVPFAIQAEKT------ILTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~-~~~~~~~~~~~------~~vN~~g 254 (484)
.|++|+|+||++++|...+...... |++|+.+. ++++.+ .++++.... . .....+..... .-.+..|
T Consensus 164 ~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~-~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g 240 (371)
T 3gqv_A 164 KPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFD-LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240 (371)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHH-HHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHH-HHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCC
Confidence 6899999999999999887766666 88888776 566655 334443220 0 01111222111 1122333
Q ss_pred HHHHHHHHHHhh-hcCCEEEEEeCCC
Q psy8786 255 LVRTCVFLFPLL-RRHARVVNLSSSA 279 (484)
Q Consensus 255 ~~~l~~allp~l-~~~grIV~iSS~a 279 (484)
.-...+.++..+ +++|+++.++...
T Consensus 241 ~~~~~~~~~~~l~~~~G~iv~~g~~~ 266 (371)
T 3gqv_A 241 NVESTTFCFAAIGRAGGHYVSLNPFP 266 (371)
T ss_dssp SHHHHHHHHHHSCTTCEEEEESSCCC
T ss_pred chHHHHHHHHHhhcCCCEEEEEecCc
Confidence 334455666777 5789999887544
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.038 Score=55.81 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCC------ccHHHHHHHH------Hhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------PFAIQAEKTI------LTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~------~vN 251 (484)
.|++|+|+|+ ++||...+..+... |+ +|+++++++++.+.+. ++....... ...+...... -++
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid 271 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK-ALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 271 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH-HhCCcEEEccccccchHHHHHHHHhCCCccEEEE
Confidence 5889999996 89999888765555 77 7999999988876543 333221001 1112222110 123
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSS 277 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS 277 (484)
..|.-...+.++..++++ |+++.++.
T Consensus 272 ~~G~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 272 CAGTAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp SSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEECC
Confidence 333334566777888888 99998876
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.017 Score=58.03 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCchHHHHH-HHHHH-hcCCCe-EEEEecCch---hHHHHHHHHHhcCC--CC-ccHHHHHHH-----HH
Q psy8786 184 PSERVAVVTGANKGLGFGI-VKSLC-EQFDGY-IYLTARDKK---KGAEAVQVLKDRAS--TV-PFAIQAEKT-----IL 249 (484)
Q Consensus 184 L~gKvaLITGassGIG~ai-A~~La-~~gga~-Vvl~~R~~~---~~~~~~~~l~~~~~--~~-~~~~~~~~~-----~~ 249 (484)
+++++|+|+|| |+||... +. ++ +.-|++ |++++++++ +.+.+ +++..... .. ...+ .... .-
T Consensus 171 ~~~~~VlV~Ga-G~vG~~a~iq-la~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~lGa~~v~~~~~~~~~-i~~~~gg~Dvv 246 (357)
T 2b5w_A 171 WDPSSAFVLGN-GSLGLLTLAM-LKVDDKGYENLYCLGRRDRPDPTIDII-EELDATYVDSRQTPVED-VPDVYEQMDFI 246 (357)
T ss_dssp CCCCEEEEECC-SHHHHHHHHH-HHHCTTCCCEEEEEECCCSSCHHHHHH-HHTTCEEEETTTSCGGG-HHHHSCCEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHH-HHHHHcCCcEEEEEeCCcccHHHHHHH-HHcCCcccCCCccCHHH-HHHhCCCCCEE
Confidence 34589999999 9999988 55 55 443776 999999887 66544 33332211 00 1111 1111 01
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
++..|.-...+.++..++++|+++.++...
T Consensus 247 id~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 276 (357)
T 2b5w_A 247 YEATGFPKHAIQSVQALAPNGVGALLGVPS 276 (357)
T ss_dssp EECSCCHHHHHHHHHHEEEEEEEEECCCCC
T ss_pred EECCCChHHHHHHHHHHhcCCEEEEEeCCC
Confidence 223333334566777788889998877644
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.04 Score=52.74 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
+|++++|+|.|+ ||+|.++|+.|++.|-.+|+++|++.
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 357889999996 69999999999999445899999987
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.22 Score=49.97 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.++.|.|+|++|++|..+|..++..|- ..|+++|+++++++....++..
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~ 56 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH 56 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhh
Confidence 457799999999999999999998832 3799999998877655555543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.046 Score=55.12 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCC------ccHHHHHHH------HHhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTV------PFAIQAEKT------ILTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~------~~~~~~~~~------~~vN 251 (484)
.|++|+|+|+ ++||...+...... |+ +|+++++++++.+.+. ++....... ...+..... .-++
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid 267 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI-ELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 267 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH-HTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH-HcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 5889999996 89999888766656 77 7999999988876543 333221001 111222111 0123
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS~a 279 (484)
..|.-...+.++..++++ |+++.++...
T Consensus 268 ~~g~~~~~~~~~~~l~~~~G~iv~~G~~~ 296 (373)
T 1p0f_A 268 CAGRIETMMNALQSTYCGSGVTVVLGLAS 296 (373)
T ss_dssp CSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 334334566777888888 9999887543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.25 Score=48.89 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecC--chhHHHHHHHHHhc-------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD--KKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~--~~~~~~~~~~l~~~------------------------- 234 (484)
.++.+.+.|.|+ |.+|.++|..|+.. |. .|++.|++ ++.++....++...
T Consensus 5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~-g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvV 82 (315)
T 3tl2_A 5 TIKRKKVSVIGA-GFTGATTAFLLAQK-ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVV 82 (315)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEE
Confidence 346678999997 89999999999997 66 89999999 44444332222211
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+............++.|..-...+.+.+..+ .+.+.+++++...
T Consensus 83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPv 130 (315)
T 3tl2_A 83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPV 130 (315)
T ss_dssp EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChH
Confidence 0000011223455667766666666666554 3467788777543
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.19 Score=49.67 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=55.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC--eEEEEec--CchhHHHHHHHHHhc-----------------------------
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG--YIYLTAR--DKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga--~Vvl~~R--~~~~~~~~~~~l~~~----------------------------- 234 (484)
+++||||+|.||..++..|+.+ +. .+++.++ ++++++....++...
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~-~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred EEEEECCCChhHHHHHHHHHhC-CCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 4899999999999999999986 43 5888888 655443222222110
Q ss_pred --CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 235 --ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 235 --~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
+............+.+|+.+...+++++..+- .+.|+++|+
T Consensus 81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SN 123 (313)
T 1hye_A 81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITN 123 (313)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSS
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecC
Confidence 00000011234568899999999999887753 445554443
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.07 Score=53.09 Aligned_cols=94 Identities=19% Similarity=0.120 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CCCccHHHHHHHHH-------hhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---STVPFAIQAEKTIL-------TNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~-------vN~~g 254 (484)
.|++++|+|+ +++|...+......|+++|+++++++++.+.+ +++.... ......+....... .+..|
T Consensus 171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G 248 (345)
T 3jv7_A 171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REVGADAAVKSGAGAADAIRELTGGQGATAVFDFVG 248 (345)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCC
Confidence 5889999998 99999877765555577999999998876644 3333220 01111122211110 12233
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.-...+..+..++++|+++.++...+
T Consensus 249 ~~~~~~~~~~~l~~~G~iv~~G~~~~ 274 (345)
T 3jv7_A 249 AQSTIDTAQQVVAVDGHISVVGIHAG 274 (345)
T ss_dssp CHHHHHHHHHHEEEEEEEEECSCCTT
T ss_pred CHHHHHHHHHHHhcCCEEEEECCCCC
Confidence 33456677788888999998875543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.035 Score=55.97 Aligned_cols=92 Identities=11% Similarity=-0.012 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcC---CCC-ccHHHHHHH------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRA---STV-PFAIQAEKT------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~------~~vN~~ 253 (484)
.|++|+|+|+ ++||...+..+... |+ +|+++++++++.+.+ +++.... ... ...+..... .-++..
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVC-GASIIIAVDIVESRLELA-KQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHH-HHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 5789999995 89999888766656 77 699999998876654 3443220 011 111222211 012333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
|.-...+.++..++++|+++.++...
T Consensus 267 g~~~~~~~~~~~l~~~G~iv~~G~~~ 292 (371)
T 1f8f_A 267 GSPEILKQGVDALGILGKIAVVGAPQ 292 (371)
T ss_dssp CCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred CCHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 33345566777888889998876543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.091 Score=45.74 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQ 229 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~ 229 (484)
++.++|.|+ |.+|+.+++.|.++ |..|++++++. +..+...+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~ 45 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQ 45 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCChHHHHHHHH
Confidence 456888886 89999999999998 88999999984 54444433
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.047 Score=53.92 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=33.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
+++|+||++|||..++..+... |++|+++++++++.+.+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~ 191 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYL 191 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence 7999999999999998877777 78999999988776654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.065 Score=52.30 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||+++|.|+++-+|+.+|..|+.+ |+.|.++.|..+.+++.
T Consensus 155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~-gAtVtv~h~~t~~L~~~ 200 (285)
T 3p2o_A 155 EIDLEGKDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKTKDLSLY 200 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSCHHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCchhHHHH
Confidence 46789999999999999999999999999 89999999877665543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.044 Score=53.07 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.++++|+++|.|+ |++|+++++.|++. |.+|++++|+.+++++..
T Consensus 125 ~~~~~~~v~iiGa-G~~g~aia~~L~~~-g~~V~v~~r~~~~~~~l~ 169 (275)
T 2hk9_A 125 PEVKEKSILVLGA-GGASRAVIYALVKE-GAKVFLWNRTKEKAIKLA 169 (275)
T ss_dssp TTGGGSEEEEECC-SHHHHHHHHHHHHH-TCEEEEECSSHHHHHHHT
T ss_pred CCcCCCEEEEECc-hHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHH
Confidence 4678899999996 69999999999998 679999999987766543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.048 Score=53.85 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
+++|+||++|||..++..+... |++|+++++++++.+.+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~ 190 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYL 190 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH
Confidence 7999999999999988876666 88999999998876654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.097 Score=52.76 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
.|++++|+||+||||..++..+... |++|++++ ++++.+.
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~ 222 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASEL 222 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHH
Confidence 6899999999999999988776666 78998888 4455443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.076 Score=52.23 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=56.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCc---------cHHHHHHHHHhhhHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVP---------FAIQAEKTILTNYLGLV 256 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~vN~~g~~ 256 (484)
|+ ++|+||++++|...+..+... |++|+++++++++.+.+. ++........ ....++.. ++..|.-
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~d~v--~d~~g~~ 222 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLK-SLGANRILSRDEFAESRPLEKQLWAGA--IDTVGDK 222 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHH-HHTCSEEEEGGGSSCCCSSCCCCEEEE--EESSCHH
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH-hcCCCEEEecCCHHHHHhhcCCCccEE--EECCCcH
Confidence 46 999999999999887766666 889999999988876553 3432200000 00011111 1222322
Q ss_pred HHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 257 RTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 257 ~l~~allp~l~~~grIV~iSS~ag 280 (484)
..+.++..++++|+++.++...+
T Consensus 223 -~~~~~~~~l~~~G~iv~~G~~~~ 245 (324)
T 3nx4_A 223 -VLAKVLAQMNYGGCVAACGLAGG 245 (324)
T ss_dssp -HHHHHHHTEEEEEEEEECCCTTC
T ss_pred -HHHHHHHHHhcCCEEEEEecCCC
Confidence 55667778888999998876554
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.036 Score=54.93 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCCCCE-EEEEcCCc-----------------h-HHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERV-AVVTGANK-----------------G-LGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKv-aLITGass-----------------G-IG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
++.||+ ||||+|.. | +|.++|++++++ |+.|+++.+..
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~-Ga~V~lv~g~~ 89 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAA-GYGVLFLYRAR 89 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHT-TCEEEEEEETT
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHC-CCEEEEEecCC
Confidence 357787 99999876 7 999999999999 99999988753
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.24 Score=49.28 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=38.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~ 232 (484)
++..++.+.|+|+ |++|.++|..|+.. +. .|++.|+++++++....++.
T Consensus 5 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~-~~~~el~l~D~~~~k~~g~a~DL~ 55 (326)
T 3vku_A 5 TDKDHQKVILVGD-GAVGSSYAYAMVLQ-GIAQEIGIVDIFKDKTKGDAIDLE 55 (326)
T ss_dssp --CCCCEEEEECC-SHHHHHHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECC-CHHHHHHHHHHHhC-CCCCeEEEEeCChHHHHHHHhhHh
Confidence 3456778999996 89999999999987 44 79999999887776555554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.43 Score=47.48 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+.+.+.|+|+ |.+|.++|..|+.. +. .|++.|+++++++..+.++...
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~-~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~a 81 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQ-GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICA 81 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC-CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEec
Confidence 3467999996 99999999999987 54 7999999988777655555421
Q ss_pred CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 235 ~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+............++.|..-...+.+.+..+ .+.+.+++++...
T Consensus 82 g~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPv 125 (326)
T 3pqe_A 82 GANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPV 125 (326)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChH
Confidence 0000011223445677766666666666553 3457777776543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.11 Score=49.77 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
.+++| +++|.|+ |++|+++++.|.+. |.+|++++|+.+++++..+++
T Consensus 113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~-g~~v~v~~r~~~~~~~l~~~~ 159 (263)
T 2d5c_A 113 IPLKG-PALVLGA-GGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEF 159 (263)
T ss_dssp CCCCS-CEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCC-eEEEECC-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh
Confidence 46788 8999996 77999999999998 679999999988777666554
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.18 Score=51.45 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.|++|+|+|+ |++|...+...... |+ +|+++++++++.+.+ +++.
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~-~~lG 258 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHA-GASKVILSEPSEVRRNLA-KELG 258 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHH-HHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHH-HHcC
Confidence 6889999998 89999877765555 77 899999998876644 4443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.13 Score=50.34 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
.++.||+++|.|+ |+||+++|+.+... |.+|++.+|+.++.+.
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~ 195 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAAL-GANVKVGARSSAHLAR 195 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHH
Confidence 5689999999996 88999999999988 7899999999876544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.094 Score=51.99 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhc---CCCCccHHHHHHHH-H-------hhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDR---ASTVPFAIQAEKTI-L-------TNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~-~-------vN~ 252 (484)
.|++++|+|+ +|+|...+..+... |+. |+++++++++.+.+ +++... ........+....+ + .+.
T Consensus 160 ~g~~VlV~Ga-G~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a-~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~ 236 (346)
T 4a2c_A 160 ENKNVIIIGA-GTIGLLAIQCAVAL-GAKSVTAIDISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILET 236 (346)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEEC
T ss_pred CCCEEEEECC-CCcchHHHHHHHHc-CCcEEEEEechHHHHHHH-HHcCCeEEEeCCCCCHHHHHHhhcccCCccccccc
Confidence 6899999987 89998887766666 654 57788888775533 334322 11111112211111 0 122
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
.|.-...+..+..++++|+++.++...+
T Consensus 237 ~G~~~~~~~~~~~l~~~G~~v~~g~~~~ 264 (346)
T 4a2c_A 237 AGVPQTVELAVEIAGPHAQLALVGTLHQ 264 (346)
T ss_dssp SCSHHHHHHHHHHCCTTCEEEECCCCSS
T ss_pred ccccchhhhhhheecCCeEEEEEeccCC
Confidence 3333445666777888899988776544
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.55 Score=46.62 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~ 230 (484)
+.+.+.|.|+ |.+|.++|..|+.. +. .|++.|+++++++....+
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~-~~~~v~L~Di~~~~~~g~~~d 50 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLK-ELGDVVLFDIAEGTPQGKGLD 50 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEeCCchhHHHHHHH
Confidence 4567999998 99999999999987 55 899999998876543333
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.13 Score=51.44 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|++++|+|+ ++||..++..+... |++|+++++++++.+.+.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~ 220 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKREDAM 220 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHH
Confidence 5889999999 99999888876666 889999999988876553
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=93.02 E-value=0.21 Score=49.66 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=30.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCch
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKK 222 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~ 222 (484)
.+++||||+|.+|..++..|+++ + ..|++.+++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~-g~~~ev~l~Di~~~ 45 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN-PLVSVLHLYDVVNA 45 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC-TTEEEEEEEESSSH
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCCCEEEEEeCCCc
Confidence 46999999999999999999987 6 57899998765
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.23 Score=42.52 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+++ .++|.|+ |.+|..+|+.|.+. |..|++++++++..+++.+
T Consensus 6 ~~~-~viIiG~-G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~ 48 (140)
T 3fwz_A 6 ICN-HALLVGY-GRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE 48 (140)
T ss_dssp CCS-CEEEECC-SHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH
T ss_pred CCC-CEEEECc-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH
Confidence 444 4777786 77999999999998 8899999999988766543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.18 Score=49.24 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
.++.||+++|.|+ |+||+++|+.+... |.+|++++|+.++.+.
T Consensus 151 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~ 193 (293)
T 3d4o_A 151 FTIHGANVAVLGL-GRVGMSVARKFAAL-GAKVKVGARESDLLAR 193 (293)
T ss_dssp SCSTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSHHHHHH
T ss_pred CCCCCCEEEEEee-CHHHHHHHHHHHhC-CCEEEEEECCHHHHHH
Confidence 4689999999995 78999999999988 7899999999876543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.52 Score=47.28 Aligned_cols=49 Identities=20% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCC------CeEEEEecCch--hHHHHHHHHH
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFD------GYIYLTARDKK--KGAEAVQVLK 232 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gg------a~Vvl~~R~~~--~~~~~~~~l~ 232 (484)
++.-.|.||||+|+||..++..|+...- ..+.+.|.++. .++-...++.
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~ 78 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELE 78 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhh
Confidence 4556799999999999999999987411 15888888653 3343444444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.13 Score=46.01 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
+.++.++|.|+ |.+|..+|+.|.+.+|..|+++++++++.+.+.
T Consensus 37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~ 80 (183)
T 3c85_A 37 PGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHR 80 (183)
T ss_dssp CTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH
Confidence 45566888885 899999999998752578999999988766543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=92.73 E-value=0.38 Score=47.92 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
..+.+.|+|+ |++|.++|..|+.. +. .|++.|+++++++..+.++...
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~-~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~a 95 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMK-DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITA 95 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC-CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEcc
Confidence 4567999997 89999999999987 54 7999999988777666666532
Q ss_pred CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 235 ~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
+............++.|..=...+.+.+..+ .+.+.+++++...
T Consensus 96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv 139 (331)
T 4aj2_A 96 GARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV 139 (331)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence 0000001122345666665555666666554 4567888777544
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.17 Score=50.69 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCC----CccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAST----VPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~-------~vN~~ 253 (484)
.|+++||+| +|+||...+..+... |++|+++++++++.+.+ +++...... ....+...... -++..
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~ 265 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKAT-GAEVIVTSSSREKLDRA-FALGADHGINRLEEDWVERVYALTGDRGADHILEIA 265 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEecCchhHHHH-HHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECC
Confidence 689999999 899999888776666 88999999998877654 334322100 11111111111 01122
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
| -...+.++..++++|+++.++...+
T Consensus 266 g-~~~~~~~~~~l~~~G~iv~~G~~~~ 291 (363)
T 3uog_A 266 G-GAGLGQSLKAVAPDGRISVIGVLEG 291 (363)
T ss_dssp T-SSCHHHHHHHEEEEEEEEEECCCSS
T ss_pred C-hHHHHHHHHHhhcCCEEEEEecCCC
Confidence 2 1234456667777888888766544
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.12 Score=49.69 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAV 228 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~ 228 (484)
+++| +++|.|+ ||.|++++..|++. |. +|++++|+.+++++..
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~-G~~~I~v~nR~~~ka~~la 149 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQM-GVKDIWVVNRTIERAKALD 149 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHT-TCCCEEEEESCHHHHHTCC
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHH
Confidence 4577 8999987 89999999999998 66 8999999988766543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.75 Score=45.56 Aligned_cols=91 Identities=9% Similarity=-0.045 Sum_probs=57.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc-----------------------------C
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR-----------------------------A 235 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~-----------------------------~ 235 (484)
.+.+.|+|+ |.+|.++|..|+.. +. .|++.|+++++++....++... +
T Consensus 5 ~~kI~iiGa-G~vG~~~a~~l~~~-~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 5 RKKITLVGA-GNIGGTLAHLALIK-QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG 82 (321)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence 456888885 89999999999987 54 8999999988776544444421 0
Q ss_pred CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 236 STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 236 ~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
............+..|..-...+.+.+..+ .+.+.+++++...
T Consensus 83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 125 (321)
T 3p7m_A 83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVICITNPL 125 (321)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred cCCCCCCCHHHHHHHhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 000001123345666766666666665554 2457788775433
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.18 Score=49.23 Aligned_cols=46 Identities=24% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..+++||+++|.|.++=+|+.+|..|+.+ |+.|.++.+....+++.
T Consensus 156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~-gAtVtv~hs~T~~L~~~ 201 (286)
T 4a5o_A 156 GADLYGMDAVVVGASNIVGRPMALELLLG-GCTVTVTHRFTRDLADH 201 (286)
T ss_dssp TCCCTTCEEEEECTTSTTHHHHHHHHHHT-TCEEEEECTTCSCHHHH
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCCcCHHHH
Confidence 36789999999999988999999999998 89999998876655543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=92.32 E-value=0.2 Score=48.62 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=39.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
++||+++|.|+++=+|+.+|+.|.++ |+.|+++.+..+.+++...
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~-gAtVtv~~~~t~~L~~~~~ 192 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNR-NYTVSVCHSKTKDIGSMTR 192 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSCHHHHHH
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHC-CCeEEEEeCCcccHHHhhc
Confidence 79999999999988999999999999 8999999987766665433
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.2 Score=49.79 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHH--HHHhhhHHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEK--TILTNYLGLVRTCVFL 262 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~vN~~g~~~l~~al 262 (484)
.|++|+|+|+ ++||...+..+... |++|+++++++++.+.+. ++...... ...+.+.. ..-++..|.-...+..
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~-~lGa~~v~-~~~~~~~~~~D~vid~~g~~~~~~~~ 251 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAM-GAEVSVFARNEHKKQDAL-SMGVKHFY-TDPKQCKEELDFIISTIPTHYDLKDY 251 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHH-HTTCSEEE-SSGGGCCSCEEEEEECCCSCCCHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH-hcCCCeec-CCHHHHhcCCCEEEECCCcHHHHHHH
Confidence 6889999997 89999887766656 889999999988877543 33221100 00010000 0011222222234556
Q ss_pred HHhhhcCCEEEEEeCCC
Q psy8786 263 FPLLRRHARVVNLSSSA 279 (484)
Q Consensus 263 lp~l~~~grIV~iSS~a 279 (484)
+..++++|+++.++...
T Consensus 252 ~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 252 LKLLTYNGDLALVGLPP 268 (348)
T ss_dssp HTTEEEEEEEEECCCCC
T ss_pred HHHHhcCCEEEEECCCC
Confidence 67788889999886544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.18 Score=49.20 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.++|.|+++=+|+.+|..|..+ |+.|.++.|....+++
T Consensus 156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t~~L~~ 200 (285)
T 3l07_A 156 GIKTEGAYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRFTTDLKS 200 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSSHHH
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCchhHHH
Confidence 35789999999999888999999999999 8999999887665544
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.22 Score=48.95 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=38.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
..+++||.++|.|+++=+|+.+|..|+++ |+.|.++.|....++
T Consensus 160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~~~~T~~l~ 203 (300)
T 4a26_A 160 GIEMAGKRAVVLGRSNIVGAPVAALLMKE-NATVTIVHSGTSTED 203 (300)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTSCHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCCCCch
Confidence 36789999999999888999999999998 899999998655444
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.19 Score=52.17 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.++++||.++|.|. ++.|.++|+.|+++ |+.|.+.|++..
T Consensus 4 ~~~~~~k~v~viG~-G~sG~s~A~~l~~~-G~~V~~~D~~~~ 43 (451)
T 3lk7_A 4 ITTFENKKVLVLGL-ARSGEAAARLLAKL-GAIVTVNDGKPF 43 (451)
T ss_dssp CCTTTTCEEEEECC-TTTHHHHHHHHHHT-TCEEEEEESSCG
T ss_pred hhhcCCCEEEEEee-CHHHHHHHHHHHhC-CCEEEEEeCCcc
Confidence 45678999999998 78899999999998 999999998653
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.14 Score=51.54 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=32.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
+.|+|-|| |++|+.+|+.|++ ..+|.+++++.++++++.
T Consensus 17 mkilvlGa-G~vG~~~~~~L~~--~~~v~~~~~~~~~~~~~~ 55 (365)
T 3abi_A 17 MKVLILGA-GNIGRAIAWDLKD--EFDVYIGDVNNENLEKVK 55 (365)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT--TSEEEEEESCHHHHHHHT
T ss_pred cEEEEECC-CHHHHHHHHHHhc--CCCeEEEEcCHHHHHHHh
Confidence 46888898 9999999999987 578999999988776654
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.2 Score=50.10 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=56.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-e-----EEEEecCc--hhHHHHHHHHHhc------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-Y-----IYLTARDK--KKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~-----Vvl~~R~~--~~~~~~~~~l~~~------------------------ 234 (484)
++|.||||+|.||..++..|+..+-. . |++.|+++ +.++....++...
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV 83 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence 46999999999999999999986221 4 88999874 3444444444431
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCC-EEEEEeCC
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHA-RVVNLSSS 278 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~g-rIV~iSS~ 278 (484)
+............++.|......+.+++..+- ..+ .+++++.-
T Consensus 84 vitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~-~~~~~vivvsNP 131 (333)
T 5mdh_A 84 ILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA-KKSVKVIVVGNP 131 (333)
T ss_dssp EECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSS
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEcCCc
Confidence 00000112234457778777777776666542 234 57766653
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.2 Score=48.50 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l 231 (484)
.+|+++|.|+ ||.|++++..|++. |. +|+++.|+.+++++.++++
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~-G~~~i~v~nRt~~ka~~la~~~ 163 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALY 163 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHc
Confidence 5688999985 78999999999998 65 7999999999888777665
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.27 Score=47.94 Aligned_cols=48 Identities=25% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
..+++||.++|.|++.=+|+-+|+.|+.+ |+.|.++.+..+++++...
T Consensus 154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t~~L~~~~~ 201 (288)
T 1b0a_A 154 NIDTFGLNAVVIGASNIVGRPMSMELLLA-GCTTTVTHRFTKNLRHHVE 201 (288)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTT-TCEEEEECSSCSCHHHHHH
T ss_pred CCCCCCCEEEEECCChHHHHHHHHHHHHC-CCeEEEEeCCchhHHHHhc
Confidence 45789999999999988899999999998 8999999988776655443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.66 E-value=0.29 Score=49.29 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|++|||+|+ ++||...+..+... |++|+++++++++.+.+.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~ 235 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAK 235 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 5889999998 89999888765555 889999999988876554
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.36 Score=46.64 Aligned_cols=43 Identities=14% Similarity=-0.037 Sum_probs=35.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
|+|.|.|+ |-||.++|..|++. |.+|++.+|+++.+++..+.+
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i 47 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFH-GFAVTAYDINTDALDAAKKRF 47 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHH
Confidence 56677775 67999999999998 899999999998887766553
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.4 Score=47.71 Aligned_cols=42 Identities=10% Similarity=-0.084 Sum_probs=34.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~ 230 (484)
+.+.|.|| |.+|.++|..|+.. |. +|++.|++++.++.....
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~-g~~~V~L~D~~~~~~~~~~~~ 52 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALR-ELADVVLYDVVKGMPEGKALD 52 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSSSHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEECChhHHHHHHHH
Confidence 46889998 89999999999998 65 899999998877764333
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=91.39 E-value=0.27 Score=49.06 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.|++|||+||+|++|...+...... |++|+++.+..+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~ 203 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRP 203 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCS
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence 6899999999999999887765555 888777765543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.25 Score=48.55 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..++.||.|+|.|++.-+|+-+|+.|+.+ |+.|.++.+..+++++.
T Consensus 160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t~~L~~~ 205 (301)
T 1a4i_A 160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWN-NATVTTCHSKTAHLDEE 205 (301)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSSHHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHhC-CCeEEEEECCcccHHHH
Confidence 45789999999999988999999999998 89999998877665443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=91.29 E-value=0.84 Score=45.45 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.+.+.|+|+ |.+|..+|..|+.. +. .|++.|+++++++....++.
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~-g~~~ev~L~Di~~~~~~g~a~DL~ 67 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMK-DLADEVALVDVMEDKLKGEMMDLE 67 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHH-CCCSEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHHhh
Confidence 467899998 99999999999987 54 79999999887776555554
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.31 Score=48.73 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|++|+|+|| +|+|...+......+|++|+++++++++.+.+
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~ 227 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLA 227 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 5889999999 89999877654443267999999998876654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=1.5 Score=43.42 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHHhc-------------------------CCC
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDR-------------------------AST 237 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~~~-------------------------~~~ 237 (484)
+...+.|+|| |.+|..++..++.. +. .|++.|+++++++..+.++... ...
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~-~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQ-GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcC-CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence 4467999998 99999999999986 43 6999999988877655555432 000
Q ss_pred Ccc--HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 238 VPF--AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 238 ~~~--~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
.+. ....+..+..|..-...+++.+..+ .+.+.|++++...
T Consensus 86 ~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 128 (326)
T 2zqz_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPV 128 (326)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 010 1122344556665555555555554 4568888875443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.28 Score=50.21 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
++.|++|+|+|+ |+||+.+++.+... |++|++++++.++.+.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSL-GAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHH
Confidence 367899999996 78999999998888 78999999998877665
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=1.3 Score=43.69 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+...+.|+|| |.+|..++..|+.. + ..|++.|+++++++....++...
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~-~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQ-SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICA 82 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHH-CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECC
Confidence 3456889998 99999999999987 5 37999999987766443433321
Q ss_pred CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 235 ~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
+............+..|..-...+++.+.++ .+++.|+++|..
T Consensus 83 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP 125 (317)
T 3d0o_A 83 GAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNP 125 (317)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 0000001122334566665555566655554 456788876543
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=91.02 E-value=0.27 Score=46.91 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.|++++|+|.|+ ||+|.++++.|++.|-.++.++|++.
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 357889999997 67999999999998555888987753
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=0.92 Score=44.34 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=31.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGA 225 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~ 225 (484)
.+.|+|+ |.+|.++|..|+.. +. .|++.|+++++++
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~-~~~~~v~L~D~~~~~~~ 39 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLN-LDVDEIALVDIAEDLAV 39 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHH-SCCSEEEEECSSHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhC-CCCCeEEEEECChHHHH
Confidence 3789999 99999999999987 55 7999999988765
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.37 Score=47.64 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
.|++++|.|+ +|+|...+..++..+|++|+++++++++.+.
T Consensus 163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~ 203 (348)
T 4eez_A 163 PGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNL 203 (348)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHH
T ss_pred CCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhh
Confidence 5889999987 6788777777776668899999999887653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.27 Score=49.89 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
++.|++++|.|+ |+||+.+++.+... |++|++++|+.++.+.+.
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRL-GAVVMATDVRAATKEQVE 212 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 468999999996 79999999998888 789999999988776553
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.3 Score=47.72 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHH----HHHHHHHhhhHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAI----QAEKTILTNYLGLVRTCV 260 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~vN~~g~~~l~~ 260 (484)
.|++++|+|| |++|...+...... |++|++++ ++++.+.+ +++....... ..+ .++. -.+..|.-.. .
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~-~~lGa~~v~~-d~~~v~~g~Dv--v~d~~g~~~~-~ 213 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNA-GYVVDLVS-ASLSQALA-AKRGVRHLYR-EPSQVTQKYFA--IFDAVNSQNA-A 213 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHH-HHHTEEEEES-SGGGCCSCEEE--EECC--------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHH-HHcCCCEEEc-CHHHhCCCccE--EEECCCchhH-H
Confidence 6899999999 99999887766666 88999999 77766654 3343221110 000 0011 1122232222 4
Q ss_pred HHHHhhhcCCEEEEEeC
Q psy8786 261 FLFPLLRRHARVVNLSS 277 (484)
Q Consensus 261 allp~l~~~grIV~iSS 277 (484)
.++..++++|+++.++.
T Consensus 214 ~~~~~l~~~G~~v~~g~ 230 (315)
T 3goh_A 214 ALVPSLKANGHIICIQD 230 (315)
T ss_dssp TTGGGEEEEEEEEEECC
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 45677778899888853
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.39 Score=50.53 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=37.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+.||+++|.|+ |+||+.+|+.+... |++|+++++++++++.+
T Consensus 271 ~l~GktV~IiG~-G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A 313 (494)
T 3ce6_A 271 LIGGKKVLICGY-GDVGKGCAEAMKGQ-GARVSVTEIDPINALQA 313 (494)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHH
T ss_pred CCCcCEEEEEcc-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence 468999999996 89999999999888 78999999998876554
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.39 Score=49.76 Aligned_cols=43 Identities=28% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
...+.||+++|.|.+ .||+.+|+.+... |++|+++++++....
T Consensus 242 g~~L~GKTVgVIG~G-~IGr~vA~~lraf-Ga~Viv~d~dp~~a~ 284 (464)
T 3n58_A 242 DVMMAGKVAVVCGYG-DVGKGSAQSLAGA-GARVKVTEVDPICAL 284 (464)
T ss_dssp CCCCTTCEEEEECCS-HHHHHHHHHHHHT-TCEEEEECSSHHHHH
T ss_pred CCcccCCEEEEECcC-HHHHHHHHHHHHC-CCEEEEEeCCcchhh
Confidence 356899999999965 5999999999888 899999999876543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.32 Score=44.87 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=35.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
.++|.|+ |.+|..+|+.|.++ |..|++++++++..++..+.
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~-g~~v~vid~~~~~~~~l~~~ 42 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSR-KYGVVIINKDRELCEEFAKK 42 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHH
Confidence 3899996 88999999999998 88999999999887765443
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=0.37 Score=48.10 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|++++|+|+ +|||...+..+... |++|+++++++++.+.+.
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~ 221 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAM-GHHVTVISSSNKKREEAL 221 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH
Confidence 6889999995 99999988766666 789999999988766554
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.47 Score=46.40 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
.+..+++.|.| .|-+|.++|+.|++. |.+|++.+|++++.+++.+
T Consensus 6 ~~~~~~IgiIG-~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~~~~ 50 (306)
T 3l6d_A 6 ESFEFDVSVIG-LGAMGTIMAQVLLKQ-GKRVAIWNRSPGKAAALVA 50 (306)
T ss_dssp CCCSCSEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHH
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 34455677776 578999999999998 8899999999988776554
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.11 E-value=0.89 Score=44.87 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=53.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHHhc-------------------------CCCCc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDR-------------------------ASTVP 239 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~~~-------------------------~~~~~ 239 (484)
..+.|+|+ |.+|..++..|+.. +. .|++.|.++++++....++... ....+
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~-~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p 85 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALR-QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 85 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHT-TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 45888898 99999999999987 54 7999999987655444444321 00001
Q ss_pred c--HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 240 F--AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 240 ~--~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
. ....+..+..|..-...+++.+.++ .+++.|++++.
T Consensus 86 ~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 86 RKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN 124 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred CCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 0 1122344566766666666666665 45677777544
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.52 Score=48.47 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEE-EEec
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIY-LTAR 219 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vv-l~~R 219 (484)
.+++||+++|+| .|.+|..+|+.|.+. |++|+ +.|+
T Consensus 214 ~~l~gk~vaVqG-~GnVG~~~a~~L~~~-GakVVavsD~ 250 (419)
T 3aoe_E 214 LDLRGARVVVQG-LGQVGAAVALHAERL-GMRVVAVATS 250 (419)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEEET
T ss_pred CCccCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEEcC
Confidence 478999999998 788999999999998 88887 7777
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.29 Score=49.43 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=35.1
Q ss_pred CCCEEEEEc-CCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTG-ANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITG-assGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|++++|.| |++++|...+..+... |++|+++++++++.+.+.
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~-Ga~Vi~~~~~~~~~~~~~ 213 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKD-GIKLVNIVRKQEQADLLK 213 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHH-TCCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH
Confidence 578899997 9999999888776666 889999999988766543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.31 Score=49.08 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCC------CccHHHHHHH------HHhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAST------VPFAIQAEKT------ILTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~------~~~~~~~~~~------~~vN 251 (484)
.|++|+|+|+ ++||...+..+... |+ +|+++++++++.+.+ +++...... ....+..... .-++
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTA-GASRIIGIDIDSKKYETA-KKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHH-HTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHH-HHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 5789999998 89999888776666 77 799999998887643 333221100 1111222111 1122
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeCCC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSSSA 279 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS~a 279 (484)
..|.-...+.++..++++ |+++.++...
T Consensus 270 ~~g~~~~~~~~~~~l~~g~G~iv~~G~~~ 298 (378)
T 3uko_A 270 CIGNVSVMRAALECCHKGWGTSVIVGVAA 298 (378)
T ss_dssp CSCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred CCCCHHHHHHHHHHhhccCCEEEEEcccC
Confidence 333334566677778885 8998887543
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.4 Score=43.43 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=33.2
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l 231 (484)
.+.|+|+ |.+|.++|..|+.. +. .|++.|+++++++....++
T Consensus 2 kv~ViGa-G~vG~~~a~~l~~~-~~~~el~l~D~~~~k~~g~a~DL 45 (314)
T 3nep_X 2 KVTVIGA-GNVGATVAECVARQ-DVAKEVVMVDIKDGMPQGKALDM 45 (314)
T ss_dssp EEEEECC-SHHHHHHHHHHHHH-TCSSEEEEECSSTTHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCchHHHHHHHHHH
Confidence 3778896 99999999999987 44 7999999988766443333
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.3 Score=43.35 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=34.7
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.+.|.|| |.+|..+|..|+.. |. .|++.|+++++++....++.
T Consensus 2 kI~VIGa-G~vG~~la~~la~~-g~~~eV~L~D~~~~~~~~~~~~l~ 46 (304)
T 2v6b_A 2 KVGVVGT-GFVGSTAAFALVLR-GSCSELVLVDRDEDRAQAEAEDIA 46 (304)
T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCCSEEEEECSSHHHHHHHHHHHT
T ss_pred EEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHhhh
Confidence 4788998 89999999999987 66 89999999887665444443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.52 Score=47.43 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
+++||++.|.| .|.||+.+|+.+.+. |++|++.|++.++
T Consensus 172 ~L~GktV~I~G-~GnVG~~~A~~l~~~-GakVvvsD~~~~~ 210 (355)
T 1c1d_A 172 SLDGLTVLVQG-LGAVGGSLASLAAEA-GAQLLVADTDTER 210 (355)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEeCCccH
Confidence 68999999997 588999999999988 8999988887654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.55 Score=45.64 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=34.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
++|.|.|+ |.+|.++|..|++. |.+|++.+|+++.+++..+
T Consensus 16 ~~I~VIG~-G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~ 56 (302)
T 1f0y_A 16 KHVTVIGG-GLMGAGIAQVAAAT-GHTVVLVDQTEDILAKSKK 56 (302)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHH
Confidence 46888887 78999999999998 8899999999887776543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.47 Score=46.47 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
+|++++|+|.|+ ||+|.++++.|++.|-+++.++|.+.-.
T Consensus 33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve 72 (292)
T 3h8v_A 33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVE 72 (292)
T ss_dssp GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC-
T ss_pred HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence 467889999986 6899999999999965789999988643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.39 Score=44.45 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=32.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
+++.|.| .|.+|.++++.|++. |.+|++++|+.++.++
T Consensus 29 ~~I~iiG-~G~~G~~la~~l~~~-g~~V~~~~r~~~~~~~ 66 (215)
T 2vns_A 29 PKVGILG-SGDFARSLATRLVGS-GFKVVVGSRNPKRTAR 66 (215)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESSHHHHHH
T ss_pred CEEEEEc-cCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 4588888 789999999999998 7899999999876554
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.51 Score=45.49 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=36.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+++.|.|++|-+|.++++.|++. |.+|++++|+++..++..+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~ 53 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS-AHHLAAIEIAPEGRDRLQG 53 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHh
Confidence 46999999899999999999998 7899999999887766543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.43 Score=48.41 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~ 227 (484)
.|++|+|.|+ |+||...+...... |+ +|+++++++++.+.+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a 226 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLL-GAACVIVGDQNPERLKLL 226 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHH
Confidence 5889999997 99999887766656 77 899999998876544
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=2.1 Score=41.93 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=32.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchhHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~~~~~~ 228 (484)
++.|.|+ |.+|..+|..|++.+ +..|++.++++++++...
T Consensus 2 kI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~ 42 (310)
T 1guz_A 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKA 42 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHH
Confidence 4778898 999999999999852 578999999988776543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=89.33 E-value=0.37 Score=46.82 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcC-CCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQF-DGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~g-ga~Vvl~~R~~~~~~~~ 227 (484)
..+++||+++|.|++.=+|+-+|+.|.+++ ++.|+++.|..+++.+.
T Consensus 153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~~~ 200 (281)
T 2c2x_A 153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPAL 200 (281)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHHHH
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHHHH
Confidence 357899999999998878999999999875 68999998887665443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=0.58 Score=48.22 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+.||+++|.|.+ .||+.+|+.+... |++|+++++++.+..+
T Consensus 216 ~~L~GktV~ViG~G-~IGk~vA~~Lra~-Ga~Viv~D~dp~ra~~ 258 (435)
T 3gvp_A 216 MMFGGKQVVVCGYG-EVGKGCCAALKAM-GSIVYVTEIDPICALQ 258 (435)
T ss_dssp CCCTTCEEEEECCS-HHHHHHHHHHHHT-TCEEEEECSCHHHHHH
T ss_pred ceecCCEEEEEeeC-HHHHHHHHHHHHC-CCEEEEEeCChhhhHH
Confidence 46799999999975 5999999999888 8999999998765443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.18 E-value=1.8 Score=42.66 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=36.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~ 232 (484)
..+.|+|| |.+|..++..++.. +. .|++.|+++++++..+.++.
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~-~~~~el~L~Di~~~~~~g~~~dl~ 51 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQ-GIAEEFVIVDVVKDRTKGDALDLE 51 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHcC-CCCCEEEEEeCCchHHHHHHHHHH
Confidence 46999998 99999999999987 43 69999999888776555554
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.43 Score=45.33 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQV 230 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~ 230 (484)
.+.++.|.|+ |.+|..+++.|++. |.. |.+++|++++.++..+.
T Consensus 9 ~~m~i~iiG~-G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~ 53 (266)
T 3d1l_A 9 EDTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTEESARELAQK 53 (266)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHH
T ss_pred CCCeEEEEcC-CHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHH
Confidence 3446888886 88999999999998 777 88999998887776554
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=88.72 E-value=2.3 Score=41.74 Aligned_cols=90 Identities=9% Similarity=-0.027 Sum_probs=56.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHhc---------------------------CCCCc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKDR---------------------------ASTVP 239 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~~---------------------------~~~~~ 239 (484)
.+.|+|| |.+|..++..++..+- ..|++.|+++++++..+.++... +....
T Consensus 2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 4889998 9999999999998621 47999999988877655555431 00000
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 240 ~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
.....+..+..|..-...+++.+..+ .+.+.|+++|...
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv 119 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV 119 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence 00112334566665555566555554 4568888875433
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=1.1 Score=44.22 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=29.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCC--CeEEEEecCc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFD--GYIYLTARDK 221 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gg--a~Vvl~~R~~ 221 (484)
.+.|+||+|.+|..++..|+.. + ..|++.|+++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~-~~~~ev~L~Di~~ 36 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAH 36 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSS
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCcEEEEEeCCc
Confidence 4899999999999999999987 5 5799999987
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=0.74 Score=45.31 Aligned_cols=41 Identities=22% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAV 228 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~ 228 (484)
.+++.|.| .|.||.++|+.|.+. |. +|++++|+++..+.+.
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~ 75 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAV 75 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHH
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHH
Confidence 36788888 688999999999998 77 8999999988776544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.58 E-value=0.67 Score=46.85 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~ 227 (484)
.|++|+|.|+ ||||...+...... |+ +|+++++++++.+.+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a 226 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLL-GAAVVIVGDLNPARLAHA 226 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHH
Confidence 6889999995 99999877655555 77 688999998876654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=88.39 E-value=0.53 Score=46.78 Aligned_cols=92 Identities=14% Similarity=0.007 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCCccH----HHHHHHH-------Hhhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVPFA----IQAEKTI-------LTNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~-------~vN~ 252 (484)
.|++++|+|+ |+||...+...... |+ +|+++++++++.+.+ +++.......... +...... -.+.
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~ 242 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIA-LEYGATDIINYKNGDIVEQILKATDGKGVDKVVIA 242 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHH-HHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHH-HHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 5788999985 89999877765555 77 799999988776543 3443221111111 1111110 0112
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeCCC
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSSSA 279 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS~a 279 (484)
.|.-...+.++..++++|+++.++...
T Consensus 243 ~g~~~~~~~~~~~l~~~G~~v~~G~~~ 269 (352)
T 3fpc_A 243 GGDVHTFAQAVKMIKPGSDIGNVNYLG 269 (352)
T ss_dssp SSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred CCChHHHHHHHHHHhcCCEEEEecccC
Confidence 222234556667777788888776543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=88.04 E-value=1.1 Score=45.00 Aligned_cols=43 Identities=9% Similarity=-0.037 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
++++++.|.| .|-+|..+|+.|++. |..|++.+|++++.+++.
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~-G~~V~v~dr~~~~~~~l~ 62 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKG-GHECVVYDLNVNAVQALE 62 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHH
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHH
Confidence 3556788887 578999999999998 889999999988776554
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=2.6 Score=41.18 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=35.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+.+.|+|| |.+|..++..|+.. |. +|++.|+++++++....++.
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~-g~~~v~L~Di~~~~~~g~~~dl~ 47 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAK-ELGDIVLLDIVEGVPQGKALDLY 47 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCeEEEEeCCccHHHHHHHhHH
Confidence 45889998 99999999999987 54 79999999887765444443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=87.80 E-value=0.65 Score=46.09 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
.++.||++.|.|. |.||+++|+.|... |.+|++.+|+.++.+
T Consensus 151 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~-G~~V~~~d~~~~~~~ 192 (330)
T 2gcg_A 151 YGLTQSTVGIIGL-GRIGQAIARRLKPF-GVQRFLYTGRQPRPE 192 (330)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHGGG-TCCEEEEESSSCCHH
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHC-CCEEEEECCCCcchh
Confidence 4678999999987 88999999999988 889999999876544
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=0.74 Score=45.63 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=35.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
++|.|.|| |-+|..||..|+.. |..|++.|.+++.+++..+.+++
T Consensus 7 ~~VaViGa-G~MG~giA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~ 51 (319)
T 3ado_A 7 GDVLIVGS-GLVGRSWAMLFASG-GFRVKLYDIEPRQITGALENIRK 51 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHH
T ss_pred CeEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHH
Confidence 34666665 67999999999998 89999999999877766655543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=87.64 E-value=0.78 Score=46.56 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=38.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
.+.+++|+|.|+ |.||..+|+.+... |++|++++|+.++++.+.+
T Consensus 181 ~v~~~kV~ViG~-G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 181 TVKPASALVLGV-GVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp EECCCEEEEESC-SHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 457899999998 68999999999988 8899999999988776644
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=2.8 Score=42.34 Aligned_cols=93 Identities=13% Similarity=-0.009 Sum_probs=53.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC-e---EEEEecCch----hHHHHHHHHHhc-----------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG-Y---IYLTARDKK----KGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga-~---Vvl~~R~~~----~~~~~~~~l~~~----------------------- 234 (484)
...|.||||+|+||.+++..++..+-. . |++.+.+.+ +++..+.++...
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 356999999999999999999985322 2 777655433 344444444432
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
+............++.|..=...+.+.+..+..+.+.|+++|.-
T Consensus 112 VVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 112 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 10111112344566677655555555555443445777766643
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=0.73 Score=45.64 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
..++.||+++|.|++.=+|+.+|+.|+.. |+.|++++|+.
T Consensus 172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~-gAtVtv~nR~~ 211 (320)
T 1edz_A 172 GNRLYGKKCIVINRSEIVGRPLAALLAND-GATVYSVDVNN 211 (320)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSSE
T ss_pred CCCCCCCEEEEECCCcchHHHHHHHHHHC-CCEEEEEeCch
Confidence 45789999999998887899999999998 79999998873
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=0.79 Score=45.78 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK 221 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~ 221 (484)
.+++++|+|.|+ ||+|.++|+.|+..|-+++.++|++.
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 357889999986 68999999999999656899998864
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=87.16 E-value=1.1 Score=44.27 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAV 228 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~ 228 (484)
+.+.|.|| |.+|.++|..|+.. |. .|++.|++++.++...
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~-g~~~V~L~Di~~~~l~~~~ 55 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQK-DLGDVYMFDIIEGVPQGKA 55 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECSSTTHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHH
Confidence 46888998 89999999999998 65 8999999988776533
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=86.97 E-value=0.74 Score=43.38 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
.++.++++.|.| .|.+|.++|+.|++. |.+|++.+|++++
T Consensus 15 ~~~~~~kIgiIG-~G~mG~alA~~L~~~-G~~V~~~~r~~~~ 54 (245)
T 3dtt_A 15 LYFQGMKIAVLG-TGTVGRTMAGALADL-GHEVTIGTRDPKA 54 (245)
T ss_dssp ----CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHH
T ss_pred cccCCCeEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCChhh
Confidence 456778888886 778999999999998 8899999999875
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=1.2 Score=45.88 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
...+.||+++|.| -|-||+++|+.|... |++|+++++++.+..+
T Consensus 206 g~~L~GktVgIiG-~G~IG~~vA~~Lka~-Ga~Viv~D~~p~~a~~ 249 (436)
T 3h9u_A 206 DVMIAGKTACVCG-YGDVGKGCAAALRGF-GARVVVTEVDPINALQ 249 (436)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHH
T ss_pred CCcccCCEEEEEe-eCHHHHHHHHHHHHC-CCEEEEECCChhhhHH
Confidence 3568999999999 557999999999988 8999999998765543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=86.36 E-value=0.93 Score=45.47 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.|++++|+|.|+ ||+|.++++.|++.|-.++.++|++.-
T Consensus 115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~V 153 (353)
T 3h5n_A 115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQI 153 (353)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence 357889999987 789999999999996668999998753
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=85.99 E-value=1.1 Score=42.01 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
..+++||.|||.||+ -+|...++.|++. |++|++++.+..
T Consensus 26 fl~L~gk~VLVVGgG-~va~~ka~~Ll~~-GA~VtVvap~~~ 65 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGG-TIATRRIKGFLQE-GAAITVVAPTVS 65 (223)
T ss_dssp EECCTTCCEEEECCS-HHHHHHHHHHGGG-CCCEEEECSSCC
T ss_pred EEEcCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEECCCCC
Confidence 468999999999976 6999999999999 899999887643
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.96 E-value=1.1 Score=47.05 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.5
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+|.|.|+ |-+|.+||..|++. |..|++.+++++.+++..+.+
T Consensus 7 kVgVIGa-G~MG~~IA~~la~a-G~~V~l~D~~~e~l~~~~~~i 48 (483)
T 3mog_A 7 TVAVIGS-GTMGAGIAEVAASH-GHQVLLYDISAEALTRAIDGI 48 (483)
T ss_dssp CEEEECC-SHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHH
T ss_pred EEEEECc-CHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHH
Confidence 3445555 78999999999998 889999999999888776654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=3.5 Score=40.16 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=33.3
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
|.|.|+ |+||..+|..|+.++-. .+++.|.+++.++-.+.++..
T Consensus 3 V~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h 47 (294)
T 2x0j_A 3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH 47 (294)
T ss_dssp EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhc
Confidence 667785 99999999999887333 699999998776655555543
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.61 E-value=0.96 Score=44.82 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
.|++++|+||++++|...+......|+.+|+.++ +.++.+
T Consensus 142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~ 181 (349)
T 4a27_A 142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHE 181 (349)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHH
Confidence 6899999999999999877755444345777776 444443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=85.57 E-value=1.3 Score=42.72 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=33.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
++.|.|+ |.+|..+|..|++. |.+|++++|+++..+...+
T Consensus 5 ~i~iiG~-G~~G~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~ 44 (316)
T 2ew2_A 5 KIAIAGA-GAMGSRLGIMLHQG-GNDVTLIDQWPAHIEAIRK 44 (316)
T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred eEEEECc-CHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHh
Confidence 5788886 88999999999998 7899999999887766544
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.38 E-value=1.3 Score=44.10 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
.++.||++.|.|. |.||+++|+.+... |.+|++.+|+.+.
T Consensus 142 ~~l~g~~vgIIG~-G~iG~~vA~~l~~~-G~~V~~~d~~~~~ 181 (333)
T 2d0i_A 142 ESLYGKKVGILGM-GAIGKAIARRLIPF-GVKLYYWSRHRKV 181 (333)
T ss_dssp CCSTTCEEEEECC-SHHHHHHHHHHGGG-TCEEEEECSSCCH
T ss_pred CCCCcCEEEEEcc-CHHHHHHHHHHHHC-CCEEEEECCCcch
Confidence 4689999999985 78999999999988 8899999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 484 | ||||
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 9e-26 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 1e-14 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 5e-13 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 5e-13 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 8e-12 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 8e-12 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 1e-11 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 1e-11 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 1e-11 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 3e-11 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 4e-11 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 7e-11 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-10 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 1e-10 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 1e-10 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-10 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-10 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 3e-10 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 3e-10 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-10 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 4e-10 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 5e-10 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 5e-10 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 5e-10 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 9e-10 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 1e-09 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-09 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-09 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 2e-09 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 3e-09 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 4e-09 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 4e-09 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 6e-09 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 8e-09 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 8e-09 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 1e-08 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 1e-08 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 1e-08 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 2e-08 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 2e-08 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 5e-08 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 5e-08 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 5e-08 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 6e-08 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 8e-08 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 3e-07 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 3e-07 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 4e-07 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 7e-07 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 8e-07 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 9e-07 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 1e-06 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 1e-06 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 2e-06 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-06 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 4e-06 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 5e-05 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 2e-04 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-04 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 4e-04 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 4e-04 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 0.001 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 0.004 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 0.004 |
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 9e-26
Identities = 71/235 (30%), Positives = 102/235 (43%), Gaps = 49/235 (20%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-------- 238
VA+VTG NKG+G IV+ LC F G + LTARD +G AVQ L+ +
Sbjct: 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDID 63
Query: 239 ------------------------------------PFAIQAEKTILTNYLGLVRTCVFL 262
PF IQAE T+ TN+ G C L
Sbjct: 64 DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 123
Query: 263 FPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLR-----EPVSLRSLNITKEHPRAHV 317
PL++ RVVN+SS + + ++ + E V L + + H
Sbjct: 124 LPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQ 183
Query: 318 AKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+GWP SAY V+KIGV +L+RI+ +K + ++NA PG+V T+M+
Sbjct: 184 KEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA 238
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 71.4 bits (174), Expect = 1e-14
Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 33/217 (15%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQ-FDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQ 243
S VVTGAN+G+G G+V+ L + +I TARD +K E + R +P +
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 244 AEKTILTNYLGLVRT--------CVFLFPLLRRHARVVNLSSSAGHLSQITNLE-----L 290
+K++ T + + +L + + + N
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHV---------------AKGWPDSAYAVSKIGVNL 335
+K L L+ S S + A + + +P AY +SK +N+
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINM 181
Query: 336 LTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
R +L + + ++ PG+V TN+
Sbjct: 182 FGRTLAV----DLKDDNVLVVNFCPGWVQTNLGGKNA 214
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.6 bits (162), Expect = 5e-13
Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 31/235 (13%)
Query: 178 VNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS 236
VNG +VA+VTGA +G+G ++L + G + L + + G + L ++
Sbjct: 1 VNG------KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFE 52
Query: 237 TVP-FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI-------TNL 288
IQ + R V R+ L ++AG ++ NL
Sbjct: 53 PQKTLFIQCDVADQQQLRDTFRKVV------DHFGRLDILVNNAGVNNEKNWEKTLQINL 106
Query: 289 E-----LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKK 343
L + + I A + Y SK G+ TR
Sbjct: 107 VSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAA-- 164
Query: 344 FDCELGNQDKVINAVHPGYVATNM-SSFMGNVNIFDDSSTFNAFERVISHFLIGQ 397
L N +NA+ PG+V T + S N+ + + +I ++ I
Sbjct: 165 LAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILD 219
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 66.6 bits (162), Expect = 5e-13
Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 32/203 (15%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+ ++TG +GLG + G + L ++GA + L D A + E
Sbjct: 6 KTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELGDAARYQHLDVTIE 63
Query: 246 K----------------TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLE 289
+ L N G+ + R +VV ++ + +
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTG------VFIG 117
Query: 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELG 349
+K + +++ +NI A + S+Y SK GV L+++ ELG
Sbjct: 118 MKTVIPAMKDAGGGSIVNI---SSAAGLMGLALTSSYGASKWGVRGLSKLAAV----ELG 170
Query: 350 NQDKVINAVHPGYVATNMSSFMG 372
+N+VHPG T M++ G
Sbjct: 171 TDRIRVNSVHPGMTYTPMTAETG 193
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (153), Expect = 8e-12
Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 13/188 (6%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS-----TVPF 240
+V VVTG +G+G GIV++ G + + +D+ G Q L T
Sbjct: 7 KVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQELPGAVFILCDVTQED 64
Query: 241 AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREP 300
++ + G + V R S+ NL L +L P
Sbjct: 65 DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALP 124
Query: 301 VSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH 359
+S A G Y +K V +T+ + +N +
Sbjct: 125 YLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALAL----DESPYGVRVNCIS 180
Query: 360 PGYVATNM 367
PG + T +
Sbjct: 181 PGNIWTPL 188
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 63.0 bits (153), Expect = 8e-12
Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 36/212 (16%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP--FA 241
+E+VA++TG++ G+G + G + +T R ++ E Q + + +
Sbjct: 4 AEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNS 61
Query: 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRL------- 294
+ A+ T ++ T + + ++ L ++AG + +
Sbjct: 62 VVADVTTDAGQDEILSTTL------GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDA 115
Query: 295 -------------RQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIY 340
++ +S I A PD Y+++K ++ TR
Sbjct: 116 TLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNT 175
Query: 341 QKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+L +N++ PG VAT S MG
Sbjct: 176 AI----DLIQHGIRVNSISPGLVATGFGSAMG 203
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 62.4 bits (151), Expect = 1e-11
Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 15/192 (7%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+ +VTGA G+G + + G + R+++ AEAV L+ A V
Sbjct: 6 KTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALEAEAIAVVADVSDP 63
Query: 241 -AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLRE 299
A++A G + + + + ++ R+ E
Sbjct: 64 KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGE 123
Query: 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVH 359
+ + A G YA K+GV L R EL + +N +
Sbjct: 124 VLEEGGSLVLTGSVAGLGAFGLA--HYAAGKLGVVGLARTLAL----ELARKGVRVNVLL 177
Query: 360 PGYVATNMSSFM 371
PG + T M++ +
Sbjct: 178 PGLIQTPMTAGL 189
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.4 bits (151), Expect = 1e-11
Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 16/194 (8%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+VA+V+G +G+G V+++ + G + ++G L D A V
Sbjct: 7 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQP 64
Query: 241 -AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLRE 299
+A G + V + + + + + NL +
Sbjct: 65 AQWKAAVDTAVTAFGGLHVLVN-NAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVV 123
Query: 300 PVSLRS--LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 357
+ +I +A Y +K V LT+ ELG +N+
Sbjct: 124 KPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTAL----ELGPSGIRVNS 179
Query: 358 VHPGYVATNMSSFM 371
+HPG V T M+ ++
Sbjct: 180 IHPGLVKTPMTDWV 193
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 62.8 bits (152), Expect = 1e-11
Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 20/224 (8%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
VA+VTGA G+G I + L ++ G +++ AR ++ ++ L++
Sbjct: 3 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDV 60
Query: 241 ----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ 296
I+A + G V V A + + + + +Q
Sbjct: 61 RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQ 120
Query: 297 LREPVSLRSLNITKEHPRAHVAKGW---PDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
+ + + + A + Y+ SK GV T+ EL
Sbjct: 121 VLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGL----ELARTGI 176
Query: 354 VINAVHPGYVATNM-SSFMGNVNIFDDSSTFNAFERVISHFLIG 396
+NAV PG+V T M +S + + + ST AF+R+ + IG
Sbjct: 177 TVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG 220
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 61.6 bits (149), Expect = 3e-11
Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 25/223 (11%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
A+VTG ++G+G+GIV+ L G +Y +R++K+ + + + + A +
Sbjct: 9 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFK-VEASVCD 65
Query: 246 KTILTNYLGLVRTCVFLFPL----------LRRHARVVNLSSSAGHLSQITNLELKKRLR 295
+ + L+ T F + + + + L N E L
Sbjct: 66 LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLS 125
Query: 296 QLREPVSLRSLNITKEHP-RAHVAKGWPDSAY-AVSKIGVNLLTRIYQKKFDCELGNQDK 353
L P S A P A +K ++ LTR E +
Sbjct: 126 VLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAF----EWAKDNI 181
Query: 354 VINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIG 396
+N V PG +AT++ D ++I +
Sbjct: 182 RVNGVGPGVIATSLVE-----MTIQDPEQKENLNKLIDRCALR 219
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.8 bits (147), Expect = 4e-11
Identities = 34/232 (14%), Positives = 51/232 (21%), Gaps = 94/232 (40%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
+ ++TGA G+G + + L +K E K + V +
Sbjct: 8 EIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDC 65
Query: 243 -----------------------------------------QAEKTILTNYLGLVRTCVF 261
Q EKT N L T
Sbjct: 66 SNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKA 125
Query: 262 LFPLL--RRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319
P + H +V ++S+AGH
Sbjct: 126 FLPAMTKNNHGHIVTVASAAGH-------------------------------------V 148
Query: 320 GWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV---INAVHPGYVATNM 367
P AY SK + EL + P +V T
Sbjct: 149 SVPFLLAYCSSKFAAVGFHKTLTD----ELAALQITGVKTTCLCPNFVNTGF 196
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 7e-11
Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 19/194 (9%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+ +VTGA+KG+G + L + G + +TAR K+ + V + + I
Sbjct: 15 KKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGT 72
Query: 246 KTILTNYLGLVRTCVFLF---------PLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ 296
+T V L + + + S N L
Sbjct: 73 MEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTV 132
Query: 297 LREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI 355
P+ +S +P +AY+ SK ++ +K E +
Sbjct: 133 AALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRK----EYSVSRVNV 188
Query: 356 --NAVHPGYVATNM 367
G + T
Sbjct: 189 SITLCVLGLIDTET 202
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 59.9 bits (145), Expect = 1e-10
Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 33/197 (16%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKK-------GAEAVQV-LKDRAST 237
+ +VTG +G+G I ++ + G + L + G QV L+D
Sbjct: 6 KGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVAEAIGGAFFQVDLEDERER 63
Query: 238 VPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHARV--VNLSSSAGHLSQITNLEL 290
V F +A +L N + L L RV VNL ++ HLS + E+
Sbjct: 64 VRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNL-TAPMHLSALAAREM 122
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGN 350
+K I + ++AY SK G+ LTR +L
Sbjct: 123 RKV----------GGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLAL----DLAP 168
Query: 351 QDKVINAVHPGYVATNM 367
+NAV PG +AT
Sbjct: 169 LRIRVNAVAPGAIATEA 185
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (145), Expect = 1e-10
Identities = 40/212 (18%), Positives = 65/212 (30%), Gaps = 37/212 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
R+A+VTGA+ G+G + ++L +Q G + AR E K
Sbjct: 11 RLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 68
Query: 233 ---DRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQ 284
+ + I N GL R L + N++ A +
Sbjct: 69 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 128
Query: 285 ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKK 343
+ K R +NI H Y+ +K V LT ++
Sbjct: 129 REAYQSMKE----RNVDDGHIININSMS--GHRVLPLSVTHFYSATKYAVTALTEGLRQ- 181
Query: 344 FDCELGNQDKVI--NAVHPGYVATNMSSFMGN 373
EL I + PG V T + + +
Sbjct: 182 ---ELREAQTHIRATCISPGVVETQFAFKLHD 210
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 59.4 bits (143), Expect = 1e-10
Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 20/194 (10%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+V +VTGA +G L E+ G I L +++ +A ++++ + +
Sbjct: 6 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGVEA-RSYVCD 62
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305
T +G V + V F + + + + + + L
Sbjct: 63 VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 122
Query: 306 LNITKEHPRAHVAKGWPDS------------AYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
++++ + + + AY SK + LT +L +
Sbjct: 123 KAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAAL----DLAPYNI 178
Query: 354 VINAVHPGYVATNM 367
+NA+ PGY+
Sbjct: 179 RVNAISPGYMGPGF 192
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 59.2 bits (143), Expect = 2e-10
Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 33/201 (16%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK------------- 232
+VA++TG G+G I E+ G + +T R G +A + +
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 233 DRASTVPFAIQAEKT-----ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN 287
D EK L N G+ +++ ++
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 288 LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDC 346
++ K +++ S+ G P AY SK V ++++ DC
Sbjct: 125 IQRMKNKGLGASIINMSSI---------EGFVGDPSLGAYNASKGAVRIMSKSAAL--DC 173
Query: 347 ELGNQDKVINAVHPGYVATNM 367
L + D +N VHPGY+ T +
Sbjct: 174 ALKDYDVRVNTVHPGYIKTPL 194
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 58.9 bits (142), Expect = 2e-10
Identities = 34/206 (16%), Positives = 78/206 (37%), Gaps = 30/206 (14%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP--FAIQ 243
+ ++TG++ G+G ++ G + +T R++ + E Q + A+
Sbjct: 5 KSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62
Query: 244 AEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSL 303
A+ T + ++ T + F + V N ++ + T+ ++ + + ++
Sbjct: 63 ADVTEASGQDDIINTTLAKFGKI--DILVNNAGANLADGTANTDQPVELYQKTFK--LNF 118
Query: 304 RSLNITKEHPRAHVAKGWPD-----------------SAYAVSKIGVNLLTRIYQKKFDC 346
+++ + + H+ K + YA +K ++ TR
Sbjct: 119 QAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAI---- 174
Query: 347 ELGNQDKVINAVHPGYVATNMSSFMG 372
+L +N+V PG VAT MG
Sbjct: 175 DLIQHGVRVNSVSPGAVATGFMGAMG 200
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 58.5 bits (141), Expect = 3e-10
Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 19/197 (9%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA+VTGA +G+G I K L + + +R +K V +K +
Sbjct: 11 KVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSFGYES-SGYAGD 67
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305
+ ++ + + ++ L + L +
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127
Query: 306 LNITKEHPR----------AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 354
+ G + Y+ SK GV T+ K EL +++
Sbjct: 128 PISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAK----ELASRNIT 183
Query: 355 INAVHPGYVATNMSSFM 371
+NA+ PG+++++M+ +
Sbjct: 184 VNAIAPGFISSDMTDKI 200
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 58.2 bits (140), Expect = 3e-10
Identities = 32/206 (15%), Positives = 66/206 (32%), Gaps = 28/206 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+ +VTG N+G+G +++ G + + R E + + A Q +
Sbjct: 10 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCD 67
Query: 246 KT--------------------ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI 285
+ L G+ A V +++ +
Sbjct: 68 VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCR 127
Query: 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345
+L + +Q V S ++ ++ + Y SK + L +
Sbjct: 128 AVAKLWLQKQQKGSIVVT-SSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAA--- 183
Query: 346 CELGNQDKVINAVHPGYVATNMSSFM 371
E + +NA+ PGYV T+ ++ M
Sbjct: 184 -EWASAGIRVNALSPGYVNTDQTAHM 208
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 57.8 bits (139), Expect = 4e-10
Identities = 34/193 (17%), Positives = 74/193 (38%), Gaps = 14/193 (7%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
++A+VTGA++G+G I ++L + G + TA + L + +
Sbjct: 5 KIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYLGANGKGLMLNVTDP 62
Query: 246 KTILTNYLGLVR-----TCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ--LR 298
+I + + + + R ++ + + TNL RL + +R
Sbjct: 63 ASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMR 122
Query: 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAV 358
+ R I + YA +K G+ ++ + E+ ++ +N V
Sbjct: 123 AMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAR----EVASRGITVNVV 178
Query: 359 HPGYVATNMSSFM 371
PG++ T+M+ +
Sbjct: 179 APGFIETDMTRAL 191
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 58.2 bits (140), Expect = 4e-10
Identities = 45/203 (22%), Positives = 70/203 (34%), Gaps = 39/203 (19%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA+ TGA +G+G GI L + G + + K AE V + AIQA+
Sbjct: 7 KVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQAD 64
Query: 246 KT--------------------ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI 285
+ + + G+ C L +V NL++
Sbjct: 65 ISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQ 124
Query: 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAY-AVSKIGVNLLTRIYQKKF 344
L+ + R I A V G P+ A A SK V R +
Sbjct: 125 QGLKHCR-----------RGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAV-- 171
Query: 345 DCELGNQDKVINAVHPGYVATNM 367
+ G + +N + PG V T+M
Sbjct: 172 --DCGAKGVTVNCIAPGGVKTDM 192
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 57.8 bits (139), Expect = 5e-10
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 20/194 (10%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAI--- 242
A+VTG +KG+G+ IV+ L G +Y +R++K+ E +++ +++ V ++
Sbjct: 7 TTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDL 64
Query: 243 -------QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLR 295
+ +T+ + G + + + H + + ++ TN E L
Sbjct: 65 LSRTERDKLMQTVAHVFDGKL-NILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLS 123
Query: 296 QLREPVSLRSLNITKEHPRAHVAK--GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
Q+ P+ S N + S Y+ SK +N +T+ E +
Sbjct: 124 QIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLAC----EWAKDNI 179
Query: 354 VINAVHPGYVATNM 367
+N+V PG + T +
Sbjct: 180 RVNSVAPGVILTPL 193
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 57.9 bits (139), Expect = 5e-10
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 17/195 (8%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPF----- 240
+ A++TG+ +G+G ++ + G + + + + + A +
Sbjct: 6 KTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAAEIGPAACAIALDVTDQ 63
Query: 241 -AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLRE 299
+I L + G + V L A +V ++ + N+ + Q
Sbjct: 64 ASIDRCVAELLDRWGSIDILVN-NAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVA 122
Query: 300 PVSLRSLNITKEHPRAHVAK---GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 356
+ K A A Y +K V LT+ L +N
Sbjct: 123 RAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGL----NLIRHGINVN 178
Query: 357 AVHPGYVATNMSSFM 371
A+ PG V +
Sbjct: 179 AIAPGVVDGEHWDGV 193
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (138), Expect = 5e-10
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 26/193 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS-----TVPF 240
R +VTGA KG+G G V++L G + +R + V+
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWE 65
Query: 241 AIQA------EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRL 294
A + +L N + FL R ++ A ++ + + +
Sbjct: 66 ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ--VSQIVARGLI 123
Query: 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 354
+ I + S Y +K +++LT++ ELG
Sbjct: 124 AR------GVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMAL----ELGPHKIR 173
Query: 355 INAVHPGYVATNM 367
+NAV+P V T+M
Sbjct: 174 VNAVNPTVVMTSM 186
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 56.9 bits (137), Expect = 9e-10
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 20/194 (10%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+ +VTG KG+G IV+ G I+ AR++ + E + + + V +
Sbjct: 9 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQV-TGSVCD 65
Query: 246 KTILTNYLGLVRTCVFLFPL----------LRRHARVVNLSSSAGHLSQITNLELKKRLR 295
++ L++T +F R ++ ++ TNLE L
Sbjct: 66 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLS 125
Query: 296 QLREPVSLR--SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
QL P+ NI A V S Y+ +K +N L R E +
Sbjct: 126 QLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLAC----EWASDGI 181
Query: 354 VINAVHPGYVATNM 367
NAV P +AT +
Sbjct: 182 RANAVAPAVIATPL 195
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 57.1 bits (137), Expect = 1e-09
Identities = 27/202 (13%), Positives = 56/202 (27%), Gaps = 35/202 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA +TG GLG G+ L G + +R + + + AIQ +
Sbjct: 26 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 83
Query: 246 KT--------------------ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI 285
I+ N + ++ + +
Sbjct: 84 VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTL 143
Query: 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345
+ + ++ +S+ ++ A +K GV +++
Sbjct: 144 EIGKQLIKAQKGAAFLSITTI--------YAETGSGFVVPSASAKAGVEAMSKSLAA--- 192
Query: 346 CELGNQDKVINAVHPGYVATNM 367
E G N + PG + T
Sbjct: 193 -EWGKYGMRFNVIQPGPIKTKG 213
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 56.2 bits (135), Expect = 2e-09
Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 33/201 (16%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK---------DRAS 236
+ ++TGA G+G ++ ++ G + ++ EA + + D AS
Sbjct: 6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAEAVGAHPVVMDVADPAS 63
Query: 237 TVPFAIQAEKT-----ILTNYLGLVRTCVFL-FPLLRRHARVVNLSSSAGHLSQITNLEL 290
+A + +Y G+ R PL + + + +++ + +
Sbjct: 64 VERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAM 123
Query: 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGN 350
+++ + R + YA S GV LTR ELG
Sbjct: 124 REKNPGSIVLTASRV-----------YLGNLGQANYAASMAGVVGLTRTLAL----ELGR 168
Query: 351 QDKVINAVHPGYVATNMSSFM 371
+N + PG++ T M++ +
Sbjct: 169 WGIRVNTLAPGFIETRMTAKV 189
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.6 bits (133), Expect = 2e-09
Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 6/181 (3%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLK-DRASTVPFAIQAEK 246
+V G LG I++ + GY + A++ ++ ++ T E+
Sbjct: 5 VIVYGGKGALGSAILEFFKKN--GYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQ 62
Query: 247 TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306
T + V + + L ++ +L
Sbjct: 63 TASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGG 122
Query: 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366
+ A + Y ++K V+ LT + + + P + T
Sbjct: 123 LLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAA--KDSGLPDNSAVLTIMPVTLDTP 180
Query: 367 M 367
M
Sbjct: 181 M 181
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 55.8 bits (134), Expect = 2e-09
Identities = 18/196 (9%), Positives = 50/196 (25%), Gaps = 20/196 (10%)
Query: 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFA 241
D + + + A G+G + L ++ ++ + ++
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTALAELKAINPKVNITF 59
Query: 242 IQAEKTILTNYLGLVRTCV-FLFPLLRRHARVVNLS--SSAGHLSQITNLELKKRLRQLR 298
+ +T + + + +F L+ ++N + + + + +
Sbjct: 60 HTYD---VTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTT 116
Query: 299 EPVSLRSLNITKEHPR------AHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQ 351
+ Y+ SK V T K
Sbjct: 117 AILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKL----APIT 172
Query: 352 DKVINAVHPGYVATNM 367
+++PG T +
Sbjct: 173 GVTAYSINPGITRTPL 188
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 55.2 bits (132), Expect = 3e-09
Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 19/194 (9%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV----------QVLKDRA 235
+VAVVTG+ G+G GI +L Q G I L E V +VL D A
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 236 S-TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRL 294
+ A++ +G + V + + + + +
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGT 122
Query: 295 RQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
+ + AH + SAY +K GV T++ E Q
Sbjct: 123 AAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTAL----ETAGQGI 178
Query: 354 VINAVHPGYVATNM 367
NA+ PG+V T +
Sbjct: 179 TANAICPGWVRTPL 192
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 4e-09
Identities = 34/232 (14%), Positives = 64/232 (27%), Gaps = 24/232 (10%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQ-FDGYI-YLTARDKKKGAEAVQVLKDRASTVPFAI 242
+ V ++TG + G+G + L + Y T RD K + + A
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 243 ---------QAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLE---- 289
++ + L + L A N+
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVR 120
Query: 290 -LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCEL 348
L+ L ++ S R L + + Y SK + L L
Sbjct: 121 MLQAFLPDMKRRGSGRVLVTGS---VGGLMGLPFNDVYCASKFALEGLCESLA----VLL 173
Query: 349 GNQDKVINAVHPGYVATNM-SSFMGNVNIFDDSSTFNAFERVISHFLIGQQI 399
++ + G V T +G+ D + + F R + +Q+
Sbjct: 174 LPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQV 225
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 54.7 bits (131), Expect = 4e-09
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 19/200 (9%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
RVA+VTG ++GLGFGI + L E G + + +R+ ++ +EA Q L ++ A + +
Sbjct: 6 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD 63
Query: 246 KTILTNYLGLVRTCVFLFPLLR---------RHARVVNLSSSAGHLSQITNLELKKRLRQ 296
+ L+ F L R NL + +
Sbjct: 64 VSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCR 123
Query: 297 LREPVSLRSLNITKEHPR---AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
+ S N + + SAYA SK GV LT+ K E G
Sbjct: 124 EAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAK----EWGRYGI 179
Query: 354 VINAVHPGYVATNMSSFMGN 373
+N + PG+ T M+ + +
Sbjct: 180 RVNVIAPGWYRTKMTEAVFS 199
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 54.6 bits (131), Expect = 6e-09
Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA+VTG G+G +VK L + G + + ++ G + L +R+ V + +E
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSE 64
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-----HLSQITNLELKKRLRQLREP 300
+ + RR + L ++AG + + + L+ E
Sbjct: 65 ADWTL----------VMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTES 114
Query: 301 V---SLRSLNITKEHPRAHVA-------KGWPDS-AYAVSKIGVNLLTRIYQKKFDCELG 349
V + + KE + + Y+ SK V+ LTR
Sbjct: 115 VFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAAL----SCR 170
Query: 350 NQDKVI--NAVHPGYVATNM 367
Q I N++HP + T M
Sbjct: 171 KQGYAIRVNSIHPDGIYTPM 190
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 54.2 bits (130), Expect = 8e-09
Identities = 37/212 (17%), Positives = 87/212 (41%), Gaps = 40/212 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP--FAIQ 243
+ ++TG++ G+G ++ G + +T R ++ E Q++ + ++
Sbjct: 6 KTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63
Query: 244 AEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH------LSQITNLELKKRLRQL 297
A+ T ++ + + ++ ++ L ++AG + T+ + + L
Sbjct: 64 ADVTTEDGQDQIINSTL------KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTL 117
Query: 298 REPVSLRS-LNITKEHPRAHVA---------------KGWPDSAY-AVSKIGVNLLTRIY 340
+ ++L++ + +TK+ VA + PD Y A++K ++ TR
Sbjct: 118 K--LNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRST 175
Query: 341 QKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
+L +N+V PG V T ++ MG
Sbjct: 176 AI----DLAKFGIRVNSVSPGMVETGFTNAMG 203
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 54.3 bits (130), Expect = 8e-09
Identities = 29/198 (14%), Positives = 62/198 (31%), Gaps = 29/198 (14%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
++TG GLG +V + G + + + ++ AE D + +++
Sbjct: 6 EAVLITGGASGLGRALVDRFVAE--GAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSL 63
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305
+ CV F + + + L + L ++ ++++
Sbjct: 64 EDQKQ----AASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFH-INVKG 118
Query: 306 -LNITKEHPRAHVAKGWPD---------------SAYAVSKIGVNLLTRIYQKKFDCELG 349
++ K A VA Y +K + L R EL
Sbjct: 119 YIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAF----ELA 174
Query: 350 NQDKVINAVHPGYVATNM 367
+V N V G + +++
Sbjct: 175 PYVRV-NGVGSGGINSDL 191
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.8 bits (129), Expect = 1e-08
Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 35/208 (16%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKK-----KGAEAVQVLKDRASTVPF 240
RV +VTGA GLG + E+ G + + KG+ A + +
Sbjct: 8 RVVLVTGAGGGLGRAYALAFAER--GALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 65
Query: 241 AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREP 300
A + LV+T + R+ + ++AG L + + + +
Sbjct: 66 KAVANYDSVEAGEKLVKTAL------DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQR 119
Query: 301 VSLRSLNITKEHPRAHVAK-----------------GWPDSAYAVSKIGVNLLTRIYQKK 343
V LR H+ K + + Y+ +K+G+ L
Sbjct: 120 VHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVI- 178
Query: 344 FDCELGNQDKVINAVHPGYVATNMSSFM 371
E + N + P + + M
Sbjct: 179 ---EGRKNNIHCNTIAPNAGSRMTETVM 203
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (129), Expect = 1e-08
Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 31/201 (15%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVP----FA 241
+VA+VTG G+G IVK L E G + + +R ++ A L+
Sbjct: 13 QVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70
Query: 242 IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301
IQ LV++ + F + +VN + LS ++ K L +
Sbjct: 71 IQCNIRNEEEVNNLVKSTLDTFG---KINFLVN-NGGGQFLSPAEHISSKGWHAVLETNL 126
Query: 302 SLRSLNITKEHPRAHVAKGWPD---------------SAYAVSKIGVNLLTRIYQKKFDC 346
+ + K + + + ++ GV LT+
Sbjct: 127 -TGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLAL---- 181
Query: 347 ELGNQDKVINAVHPGYVATNM 367
E IN V PG + +
Sbjct: 182 EWACSGIRINCVAPGVIYSQT 202
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 53.3 bits (128), Expect = 1e-08
Identities = 39/213 (18%), Positives = 68/213 (31%), Gaps = 39/213 (18%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEA-VQVLKDRASTVPFAIQA 244
++AV+TG G+G I + + G I + AEA ++ L R TV +
Sbjct: 6 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ 63
Query: 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG--HLSQITNLELKKRLRQLREPVS 302
+ + + R L ++AG L L ++ + ++
Sbjct: 64 PGDVEA----FGKQVI------STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFE--IN 111
Query: 303 LRS-LNITKEHPRAHVAKGW----------------PDSAYAVSKIGVNLLTRIYQKKFD 345
+ S + K GW + Y +K TR
Sbjct: 112 VDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALAS--- 168
Query: 346 CELGNQDKVINAVHPGYVATNMSSFMGNVNIFD 378
+LG +NA+ P V T + +FD
Sbjct: 169 -DLGKDGITVNAIAPSLVRTATTEASALSAMFD 200
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.1 bits (127), Expect = 2e-08
Identities = 39/199 (19%), Positives = 64/199 (32%), Gaps = 28/199 (14%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS-----TVPF 240
A+VTGA KG+G VK+L G + R +
Sbjct: 6 LRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWD 63
Query: 241 AIQA------EKTILTNYLGLVRTCVFLFPLLRRHARVVNLS-SSAGHLSQITNLELKKR 293
A + +L N LV FL R +++ S +SQ+ ++ R
Sbjct: 64 ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR 123
Query: 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
+I Y+ +K + +LT+ ELG
Sbjct: 124 GVPG---------SIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAM----ELGPHKI 170
Query: 354 VINAVHPGYVATNMSSFMG 372
+N+V+P V T+M +
Sbjct: 171 RVNSVNPTVVLTDMGKKVS 189
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.9 bits (126), Expect = 2e-08
Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 42/238 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFD-GY-IYLTARDKKKGAEAVQVLKDRASTVP-FAIQ 243
V V+TGA++G G + L G + ++AR + + + L + +
Sbjct: 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAA 66
Query: 244 AEKTILTNYLGLVRTCVFLFPLLRRHARVVNL---------SSSAGHLSQITNLELKKRL 294
A+ L G+ R + L R L S G L+ E+
Sbjct: 67 AD---LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123
Query: 295 RQLREPVSLRSLNITKEHPRAHVAKGWPD--------------SAYAVSKIGVNLLTRIY 340
+ + + Y K ++L ++
Sbjct: 124 ALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLYQVL 183
Query: 341 QKKFDCELGNQDKV-INAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQ 397
+ + V + + PG + +M + S ++ G
Sbjct: 184 AAE-------EPSVRVLSYAPGPLDNDMQQ-----LARETSKDPELRSKLQKLKSDGA 229
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 52.0 bits (124), Expect = 5e-08
Identities = 30/202 (14%), Positives = 76/202 (37%), Gaps = 29/202 (14%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA+VTGA +G+G + L + G + + + + AE V + + ++A
Sbjct: 19 KVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKAN 76
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELK-KRLRQLREPVSLR 304
++ + + + V + ++ + S++G +S ++ + ++ +
Sbjct: 77 VGVVEDIVRMFEEAV------KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRG 130
Query: 305 SLNITKEHPRAHVAKGWPD---------------SAYAVSKIGVNLLTRIYQKKFDCELG 349
+ +E + G + Y+ SK + R ++
Sbjct: 131 QFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAI----DMA 186
Query: 350 NQDKVINAVHPGYVATNMSSFM 371
++ +N V PG + T+M +
Sbjct: 187 DKKITVNVVAPGGIKTDMYHAV 208
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 5e-08
Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 27/193 (13%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+V ++T A +G+G + + G + T ++ K E + + + + +
Sbjct: 7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQ 64
Query: 246 K----------TILTNYLGLVRTCVFL-FPLLRRHARVVNLSSSAGHLSQITNLELKKRL 294
+L N G V L + S + + L
Sbjct: 65 IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAF-------L 117
Query: 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKV 354
++ S +N++ + V Y+ +K V LT+ + Q
Sbjct: 118 PKMLAQKSGNIINMSSVA--SSVKGVVNRCVYSTTKAAVIGLTKSVAA----DFIQQGIR 171
Query: 355 INAVHPGYVATNM 367
N V PG V T
Sbjct: 172 CNCVCPGTVDTPS 184
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 51.3 bits (122), Expect = 5e-08
Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 30/202 (14%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQ------FDGYIYLTARDKKKGAEAVQVLKDRASTVPF 240
+ ++TGA KG+G I F+ + L++R + + +
Sbjct: 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDT 61
Query: 241 ---------AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNL--- 288
++ T + G + V + R + +L+ + TNL
Sbjct: 62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAG-VGRFGALSDLTEEDFDYTMNTNLKGT 120
Query: 289 --ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFD 345
+ + S IT K + S Y +SK G L +
Sbjct: 121 FFLTQALFALMERQHSGHIFFIT----SVAATKAFRHSSIYCMSKFGQRGLVETMRL--- 173
Query: 346 CELGNQDKVINAVHPGYVATNM 367
+ I V PG V T M
Sbjct: 174 -YARKCNVRITDVQPGAVYTPM 194
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 51.6 bits (123), Expect = 6e-08
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 30/198 (15%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+ A++TGA G+G I + G + ++ + V ++ FA + +
Sbjct: 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQA-FACRCD 68
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG----------------HLSQITNLE 289
+T+ L + + +V L ++AG
Sbjct: 69 ---ITSEQELSALA---DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSF 122
Query: 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELG 349
E I A K ++YA SK + L R +LG
Sbjct: 123 FHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAF----DLG 178
Query: 350 NQDKVINAVHPGYVATNM 367
++ +N + PG + T+
Sbjct: 179 EKNIRVNGIAPGAILTDA 196
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 51.4 bits (122), Expect = 8e-08
Identities = 33/214 (15%), Positives = 55/214 (25%), Gaps = 39/214 (18%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAE-------------AVQVLKD 233
AV+TG + +G I L +Q G+ + + R + A+ AV D
Sbjct: 3 AAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGD 60
Query: 234 RASTVPFAIQAEK------------TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 281
+ + E +L N L A +
Sbjct: 61 LSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVA 120
Query: 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPD-------SAYAVSKIGVN 334
+N L + + Y ++K +
Sbjct: 121 ELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALG 180
Query: 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368
LTR EL + +NAV PG +
Sbjct: 181 GLTRAAAL----ELAPRHIRVNAVAPGLSLLPPA 210
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 32/214 (14%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQF-DGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
++TG N+GLG G+VK+L ++ T R++++ E + K+ ++ I
Sbjct: 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDL 62
Query: 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN----------------- 287
+ L V L ++ + ++ + +
Sbjct: 63 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122
Query: 288 ----LELKKRLRQLREPVSLRSLNITKEHPRAHVAKGW-----PDSAYAVSKIGVNLLTR 338
L L K+ + E + + + + AY SK +N T+
Sbjct: 123 AKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATK 182
Query: 339 IYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372
L Q + ++HPG+V T+M
Sbjct: 183 SLSVD----LYPQRIMCVSLHPGWVKTDMGGSSA 212
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 49.0 bits (116), Expect = 3e-07
Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 16/195 (8%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQA 244
ER A+VTG GLG +L + GY + + ++G + + V D
Sbjct: 1 ERSALVTGGASGLGRAAALALKAR--GYRVVVLDLR-REGEDLIYVEGDVTREEDVRRAV 57
Query: 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304
+ L V + + + + + NL + +L
Sbjct: 58 ARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRE 117
Query: 305 SLNITKEHPRAHVA-------KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQDKVIN 356
+ + V +G +AYA SK GV LT + EL +
Sbjct: 118 NPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAAR----ELAGWGIRVV 173
Query: 357 AVHPGYVATNMSSFM 371
V PG T + +
Sbjct: 174 TVAPGLFDTPLLQGL 188
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.7 bits (115), Expect = 4e-07
Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 10/185 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
R +V G LG V++ + + + + + A A ++K S A Q
Sbjct: 3 RRVLVYGGRGALGSRCVQAFRAR--NWWVASIDVVENEEASASVIVKMTDSFTEQADQVT 60
Query: 246 KTILTNY-LGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304
+ V + + L ++ L
Sbjct: 61 AEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE 120
Query: 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVI--NAVHPGY 362
+T +A + Y ++K V+ L + + AV P
Sbjct: 121 GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAG----KNSGMPSGAAAIAVLPVT 176
Query: 363 VATNM 367
+ T M
Sbjct: 177 LDTPM 181
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 48.1 bits (114), Expect = 7e-07
Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 38/202 (18%)
Query: 189 AVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKT 247
A+VT G G L E G+ + K+ E + Q +
Sbjct: 3 AIVTNVKHFGGMGSALRLSEA--GHTVACHDESFKQKDELEAFAET-------YPQLKPM 53
Query: 248 ILTNYLGLVRTCVFLFPLLRRHARV---VN---LSSSAGHLSQITNLELKKRLRQLREPV 301
L+ + +V V+ + + + + + + L+
Sbjct: 54 SEQEPAELIEAVT------SAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRP 107
Query: 302 SLRS------------LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELG 349
+I S Y ++ G L K ELG
Sbjct: 108 FALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSK----ELG 163
Query: 350 NQDKVINAVHPGYVATNMSSFM 371
+ + A+ P Y+ + S +
Sbjct: 164 EYNIPVFAIGPNYLHSEDSPYF 185
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 47.9 bits (113), Expect = 8e-07
Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 20/194 (10%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD---RASTVPF-- 240
+VA+VTGA +G+G I L + G+ + + + + A V
Sbjct: 2 KVALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDV 59
Query: 241 ----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ 296
+ A LG V + + +++ N++ Q
Sbjct: 60 SDRDQVFAAVEQARKTLGGFDVIVN-NAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQ 118
Query: 297 LREPVSLRSLNITKEHPRAHVAKGWPDS---AYAVSKIGVNLLTRIYQKKFDCELGNQDK 353
+ + K A + Y+ SK V + +L
Sbjct: 119 AAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRG----LTQTAARDLAPLGI 174
Query: 354 VINAVHPGYVATNM 367
+N PG V T M
Sbjct: 175 TVNGYCPGIVKTPM 188
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 47.8 bits (113), Expect = 9e-07
Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 35/202 (17%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+V V+TG++ GLG + + + + R K+ A +V + A++ +
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGD 65
Query: 246 KT--------------------ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI 285
T ++ N GL L +V++ + + L
Sbjct: 66 VTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSR 125
Query: 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFD 345
++ +++ S++ P YA SK G+ L+T
Sbjct: 126 EAIKYFVENDIKGTVINMSSVHEKIPWPLFVH--------YAASKGGMKLMTETLAL--- 174
Query: 346 CELGNQDKVINAVHPGYVATNM 367
E + +N + PG + T +
Sbjct: 175 -EYAPKGIRVNNIGPGAINTPI 195
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 47.7 bits (113), Expect = 1e-06
Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 23/196 (11%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VA++TG G+G K G + + G + + + V + +
Sbjct: 7 KVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIG--SPDVISFVHCD 62
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ--------- 296
T + LV T + L V + S+ + E KR+
Sbjct: 63 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 122
Query: 297 ----LREPVSLRSLNITK-EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQ 351
R + + +I + A Y +K V LT ELG
Sbjct: 123 AKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCT----ELGEY 178
Query: 352 DKVINAVHPGYVATNM 367
+N V P VA+ +
Sbjct: 179 GIRVNCVSPYIVASPL 194
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.0 bits (111), Expect = 1e-06
Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQV---LKDRASTVPFAI 242
R +VTG N+G+G I + L G+ + +T R V + D +
Sbjct: 8 RSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFT 65
Query: 243 QAEK-----TILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQL 297
E+ +L + GL + + +V+N + + +R +
Sbjct: 66 AVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG 125
Query: 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 357
R + + S+ + + + YA SK GV + R EL + N
Sbjct: 126 R-MIFIGSV--------SGLWGIGNQANYAASKAGVIGMARSIA----RELSKANVTANV 172
Query: 358 VHPGYVATNMSSFM 371
V PGY+ T+M+ +
Sbjct: 173 VAPGYIDTDMTRAL 186
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 47.0 bits (111), Expect = 2e-06
Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 22/226 (9%)
Query: 185 SERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS------- 236
++RV ++TG GLG L + G + L + + + + A
Sbjct: 3 TDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTT 60
Query: 237 ----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKK 292
+ ++A T T G + + + + +++ NL
Sbjct: 61 VADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVF 120
Query: 293 RLRQLREPVSLRSLNITKEHPRAHVA-KGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGN 350
+ + + + + +G + S YA +K GV LTR E G
Sbjct: 121 LGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAV----EYGR 176
Query: 351 QDKVINAVHPGYVATNMSSFMGNVNIFDDSSTFNAFERVISHFLIG 396
INA+ PG + T M ++ D + A E I
Sbjct: 177 YGIRINAIAPGAIWTPM--VENSMKQLDPENPRKAAEEFIQVNPSK 220
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 46.2 bits (109), Expect = 3e-06
Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 20/186 (10%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQ--VLKDRASTVPFAIQ 243
+ +V A++G+G + L ++ G + + AR+++ + V+ D + +
Sbjct: 5 KGVLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFE 62
Query: 244 AEKT--ILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301
K IL G + F ++ R
Sbjct: 63 KVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV--------RNYLPAMKE 114
Query: 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361
+ ++ + +++ + + E+ +N V PG
Sbjct: 115 KGWGRIVAITSFSVISPIENLYTSNS-ARMALTGFLKTLSF----EVAPYGITVNCVAPG 169
Query: 362 YVATNM 367
+ T
Sbjct: 170 WTETER 175
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 4e-06
Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 34/209 (16%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
VAV+TG GLG + L Q G L G + L + P + +E
Sbjct: 6 LVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSE 63
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305
K + T F + ++ ++ + Q V+L
Sbjct: 64 KDVQTAL----ALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 119
Query: 306 LNITKEHPRAHVAKGWPD-----------------------SAYAVSKIGVNLLTRIYQK 342
+ + PD +AY+ SK G+ +T +
Sbjct: 120 TFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIAR 179
Query: 343 KFDCELGNQDKVINAVHPGYVATNMSSFM 371
+L + + PG T + + +
Sbjct: 180 ----DLAPIGIRVMTIAPGLFGTPLLTSL 204
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 42.4 bits (99), Expect = 5e-05
Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 26/200 (13%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV----QVLKDRASTVPF-- 240
V VVTGA++G+G I SL + G + + K AE V + +A T
Sbjct: 3 VVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDV 60
Query: 241 ----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITN----LELKK 292
++A + G + V + R + S + + L +
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQA 120
Query: 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPD-SAYAVSKIGVNLLTRIYQKKFDCELGNQ 351
+ + + R +NI G + YA +K GV ++ + E ++
Sbjct: 121 ATKIMMKKRKGRIINIAS----VVGLIGNIGQANYAAAKAGVIGFSKTAAR----EGASR 172
Query: 352 DKVINAVHPGYVATNMSSFM 371
+ +N V PG++A++M++ +
Sbjct: 173 NINVNVVCPGFIASDMTAKL 192
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 26/210 (12%)
Query: 175 TGIVNGSVDPSERVAVVTGA--NKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV-QV 230
TG+++G + +V+G + + F I + EQ G + LT D+ + + +
Sbjct: 1 TGLLDG------KRILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLRLIQRITDR 52
Query: 231 LKDRASTVPFAIQAEKTILTNYLGLVRTCVFL-----------FPLLRRHARVVNLSSSA 279
L +A + +Q E+ + + + F +
Sbjct: 53 LPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPY 112
Query: 280 GHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339
+S+ ++ + + + + + ++ P +
Sbjct: 113 ADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNW---MTVAKSALES 169
Query: 340 YQKKFDCELGNQDKVINAVHPGYVATNMSS 369
+ E G N V G + T S
Sbjct: 170 VNRFVAREAGKYGVRSNLVAAGPIRTLAMS 199
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 188 VAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAV-QVLKDRASTVPFAIQA 244
VA+VTGA K LG I + L + GY + L A A+ L R +QA
Sbjct: 4 VALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALSATLNARRPNSAITVQA 60
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 24/182 (13%), Positives = 50/182 (27%)
Query: 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+VTG G+G I + L + ++ L +R A +++ + + A
Sbjct: 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAA 68
Query: 246 KTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305
+ + + G + +T +++ R
Sbjct: 69 CDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLH 128
Query: 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365
+ A V SA+ +G Y + + AV G A
Sbjct: 129 ELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAG 188
Query: 366 NM 367
+
Sbjct: 189 SG 190
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 21/208 (10%), Positives = 58/208 (27%), Gaps = 21/208 (10%)
Query: 187 RVAVVTGA--NKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRAS------- 236
+ +VTG + +GI +++ + G + T ++ K + S
Sbjct: 6 KRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCD 63
Query: 237 -----TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELK 291
++ + + G V + F V ++ ++ +
Sbjct: 64 VAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSF 123
Query: 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQ 351
+ + + + + ++K + R G +
Sbjct: 124 VAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAM----GPE 179
Query: 352 DKVINAVHPGYVATNMSSFMGNVNIFDD 379
+NA+ G + T +S + +
Sbjct: 180 GVRVNAISAGPIRTLAASGIKDFRKMLA 207
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 38.4 bits (88), Expect = 0.001
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQAE 245
+ V++G G+G K L G+ I + + + R + +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKC 59
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 37.0 bits (84), Expect = 0.004
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 187 RVAVVTGA--NKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRASTVPFAIQ 243
+ A + G + G G+ + KSL G I + + + +
Sbjct: 9 KRAFIAGIADDNGYGWAVAKSLAAA--GAEILVGTWVPALNIFETSLRRGKFDQSRVLPD 66
Query: 244 AEKTILTNYLGL 255
+ L
Sbjct: 67 GSLMEIKKVYPL 78
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 36.6 bits (83), Expect = 0.004
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 187 RVAVVTGA--NKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKD 233
+ ++ G NK + +GI +S Q G + T ++ + ++
Sbjct: 6 KKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNESLEKRVRPIAQE 53
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.97 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.97 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.97 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.97 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.97 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.97 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.97 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.96 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.96 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.96 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.96 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.96 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.95 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.95 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.95 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.95 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.95 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.95 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.94 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.79 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.3 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.25 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.22 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.22 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.18 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.14 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.11 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.01 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.99 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 98.92 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 98.91 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 98.85 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.84 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 98.84 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.83 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 98.77 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 98.75 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 98.72 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 98.72 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 98.69 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 98.67 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.66 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.55 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.44 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 98.43 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 98.42 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 98.4 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.12 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.06 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.02 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 97.95 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 97.59 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.89 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.79 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.62 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.61 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.41 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.38 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.34 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.23 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.18 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.05 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.9 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.89 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.83 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.75 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.64 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.54 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.53 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.52 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.51 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.44 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.35 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.11 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.04 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.89 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.88 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.82 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.69 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.66 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.47 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.28 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.18 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.13 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.13 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.03 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.95 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 93.72 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.51 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.48 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 93.4 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.34 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.33 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.24 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 93.06 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.03 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.99 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.82 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.79 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.71 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 92.69 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.47 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.34 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 91.98 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.9 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 91.88 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.65 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 91.26 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 90.57 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 90.56 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.2 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 89.97 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.88 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 89.79 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 89.65 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 89.39 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 89.26 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.17 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 88.47 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 88.3 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 88.18 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 87.76 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 87.57 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.13 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 86.23 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.25 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 85.2 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 84.86 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 84.67 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 84.29 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 83.81 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 82.41 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 81.18 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 81.15 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 80.89 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 80.13 |
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1.6e-37 Score=301.58 Aligned_cols=186 Identities=22% Similarity=0.220 Sum_probs=160.6
Q ss_pred CCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------
Q psy8786 179 NGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------ 234 (484)
Q Consensus 179 ~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------ 234 (484)
|+.++|+||+||||||++|||+++|++|+++ |++|++++|++++++++.++++..
T Consensus 3 n~~f~lenKvalITGas~GIG~a~a~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 3 NYYYCGENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp CCCCCCSSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4458899999999999999999999999999 899999999999999888888653
Q ss_pred --------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 --------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 --------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
.......++|++++++|+.++++++++++|+|++ +|+|||+||.++. +.+..
T Consensus 82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~----- 156 (251)
T d2c07a1 82 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQ----- 156 (251)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC-----
T ss_pred HHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCC-----
Confidence 2233456899999999999999999999999965 5899999999883 33332
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
.+|++||+|+++|+|+||+||+++ |||||+|+||+|+|+|....
T Consensus 157 --------------------------------~~Y~asKaal~~ltr~lA~el~~~----gIrVN~V~PG~v~T~~~~~~ 200 (251)
T d2c07a1 157 --------------------------------ANYSSSKAGVIGFTKSLAKELASR----NITVNAIAPGFISSDMTDKI 200 (251)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCC-----C
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHhhhh----CeEEEEEccCCEeccccccc
Confidence 789999999999999999999998 99999999999999998765
Q ss_pred CC---------------CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 GN---------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ~~---------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.+ .+|+|+|+++.||+|+.++|+||++| .+||||+
T Consensus 201 ~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i--~vDGG~s 250 (251)
T d2c07a1 201 SEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVF--VIDGGLS 250 (251)
T ss_dssp CHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSC
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEE--EECCCcC
Confidence 32 68999999999999999999999999 7898874
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.1e-37 Score=298.75 Aligned_cols=186 Identities=23% Similarity=0.240 Sum_probs=152.4
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
.++|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999 899999999999988888777543
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
...+.+.++|+.++++|+.|+++++|+++|+|++ +|+||+++|..+. +.+..
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~------ 155 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVG------ 155 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------C------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccccccc------
Confidence 2234456899999999999999999999999964 5899999999884 33222
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
.+|++||+|+.+|+|++|.|++++ |||||+|+||+|+|+|.....
T Consensus 156 -------------------------------~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~V~PG~i~T~~~~~~~ 200 (259)
T d1xq1a_ 156 -------------------------------SIYSATKGALNQLARNLACEWASD----GIRANAVAPAVIATPLAEAVY 200 (259)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEECCSCC--------
T ss_pred -------------------------------ccccccccchhhhhHHHHHHhccc----CeEEEEeccCcccCHHhhhhc
Confidence 789999999999999999999998 999999999999999876532
Q ss_pred C----------------CCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 373 N----------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 373 ~----------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
. ++|||+|+.++||+|+.++|+||++| .+||++++.
T Consensus 201 ~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~iTG~~i--~vDGG~s~~ 252 (259)
T d1xq1a_ 201 DDEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTI--CVDGGLTVN 252 (259)
T ss_dssp -----------------CCGGGGHHHHHHHTSGGGTTCCSCEE--ECCCCEEET
T ss_pred hHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCcEE--EeCCCEECC
Confidence 1 68999999999999999999999999 889998763
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=8.1e-37 Score=295.28 Aligned_cols=183 Identities=17% Similarity=0.238 Sum_probs=162.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999999999999999999 999999999999988888777543
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
...+.+.++|++++++|+.|+|+++|++.|.|++ .|+||+++|.++. +.+..
T Consensus 82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~------------ 149 (244)
T d1nffa_ 82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVAC------------ 149 (244)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTB------------
T ss_pred eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccc------------
Confidence 2234456999999999999999999999999965 4899999999984 33332
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-----
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN----- 373 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~----- 373 (484)
.+|++||+|+++|+|++|+||+++ |||||+|+||+|+|+|......
T Consensus 150 -------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~ 200 (244)
T d1nffa_ 150 -------------------------HGYTATKFAVRGLTKSTALELGPS----GIRVNSIHPGLVKTPMTDWVPEDIFQT 200 (244)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCSGGGTTSCTTCSCC
T ss_pred -------------------------cchhhHHHHHHHHHHHHHHHhccc----CEEEEEEeeCCccChhHhhhhHHHHhc
Confidence 789999999999999999999998 9999999999999999765432
Q ss_pred -----CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 -----VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 -----~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+|+|+|+.++||+|+.++|+||++| .+||+++.
T Consensus 201 pl~R~~~p~diA~~v~fL~s~~s~~itG~~i--~vDGG~~a 239 (244)
T d1nffa_ 201 ALGRAAEPVEVSNLVVYLASDESSYSTGAEF--VVDGGTVA 239 (244)
T ss_dssp SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred cccCCCCHHHHHHHHHHHhChhhCCCcCCEE--EECCCeec
Confidence 79999999999999999999999999 88999864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-37 Score=298.75 Aligned_cols=182 Identities=17% Similarity=0.265 Sum_probs=160.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
||+||++|||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~-G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAAR-GAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 579999999999999999999999999 999999999999999888887543
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
...+...++|+.++++|+.++++++|+++|+|++ +|+|||+||.++. +.+..
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~------------ 147 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQ------------ 147 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC------------
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCC------------
Confidence 1123345899999999999999999999999964 5899999999883 33332
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-----
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN----- 373 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~----- 373 (484)
.+|++||+|+++|+|++|.|++++ |||||+|+||+|+|+|.+...+
T Consensus 148 -------------------------~~Y~asKaal~~lt~~lA~ela~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~ 198 (243)
T d1q7ba_ 148 -------------------------ANYAAAKAGLIGFSKSLAREVASR----GITVNVVAPGFIETDMTRALSDDQRAG 198 (243)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHTSCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHhCcc----CeEEEEEecceEechhhhhhhhhHHHH
Confidence 789999999999999999999998 9999999999999998765432
Q ss_pred ----------CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 374 ----------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 374 ----------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
.+|||+|+.+.||+|+.++|+||++| .+||++.
T Consensus 199 ~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itGq~i--~vdGG~~ 241 (243)
T d1q7ba_ 199 ILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETL--HVNGGMY 241 (243)
T ss_dssp HHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSS
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeE--EECCCeE
Confidence 68999999999999999999999999 7888864
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=5.1e-37 Score=299.24 Aligned_cols=184 Identities=20% Similarity=0.290 Sum_probs=161.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+||+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999 899999999999998888887653
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
.....+.++|+.++++|+.|+|+++++++|+|++ +|+||+++|..+. ..+..
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~------- 155 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYE------- 155 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTC-------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccc-------
Confidence 1122345899999999999999999999999965 4899999999884 33332
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
..|++||+|+++|+|++|+|++++ |||||+|+||+|+|+|.+...
T Consensus 156 ------------------------------~~Y~asKaal~~lt~~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~ 201 (259)
T d2ae2a_ 156 ------------------------------AVYGATKGAMDQLTRCLAFEWAKD----NIRVNGVGPGVIATSLVEMTIQ 201 (259)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEECSBCSHHHHHHTT
T ss_pred ------------------------------cchHHHHHHHHHHHHHHHHHhCcC----ceEEEEeeeCcccCHHHHhhhh
Confidence 789999999999999999999998 999999999999999864321
Q ss_pred -------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+|+.++|+||++| .+||+++.
T Consensus 202 ~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i--~VDGG~~a 255 (259)
T d2ae2a_ 202 DPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQII--YVDGGLMA 255 (259)
T ss_dssp SHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred chhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEE--EECCCeEe
Confidence 268999999999999999999999999 88999865
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-37 Score=298.59 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=162.7
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------- 234 (484)
+++|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++++.
T Consensus 6 ~m~L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 6 NLRLDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 999999999999999888888653
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
...+.+.++|+.++++|+.|+++++++++|+|++ +++||++||.++. +.+..
T Consensus 85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~-------- 156 (255)
T d1fmca_ 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINM-------- 156 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTC--------
T ss_pred HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccccc--------
Confidence 1123456899999999999999999999999976 4799999999884 33332
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN- 373 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~- 373 (484)
.+|++||+|+++|+|+||.|++++ |||||+|+||+|+|++......
T Consensus 157 -----------------------------~~Y~asKaal~~lt~~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~ 203 (255)
T d1fmca_ 157 -----------------------------TSYASSKAAASHLVRNMAFDLGEK----NIRVNGIAPGAILTDALKSVITP 203 (255)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBCSHHHHTTCCH
T ss_pred -----------------------------ccchhHHHHHHHHHHHHHHHhCcc----CeEEEEeeeCcCcChHhhccCCH
Confidence 799999999999999999999988 9999999999999998765422
Q ss_pred ---------------CCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 374 ---------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 374 ---------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
++|+|+|++++||+|+.++|+||+.| .+|||+.
T Consensus 204 e~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i--~vDGG~~ 251 (255)
T d1fmca_ 204 EIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQIL--TVSGGGV 251 (255)
T ss_dssp HHHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTSC
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEE--EECcCcc
Confidence 68999999999999999999999999 8898874
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.1e-37 Score=296.52 Aligned_cols=185 Identities=28% Similarity=0.371 Sum_probs=159.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
++|+||++|||||++|||+++|++|+++ |++|++++|++++++++.+++.+.
T Consensus 1 f~l~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 1 FDLRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999 899999999999888877776432
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKR 293 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~ 293 (484)
...+.+.++|+.++++|+.|+|+++|+++|+|++ +|+||+++|..+ ......
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~------- 152 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN------- 152 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS-------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCcc-------
Confidence 1122356999999999999999999999999965 489999999765 322111
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
..+|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|.+...
T Consensus 153 -----------------------------~~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~I~PG~i~T~~~~~~~~ 199 (251)
T d1vl8a_ 153 -----------------------------ISAYAASKGGVASLTKALAKEWGRY----GIRVNVIAPGWYRTKMTEAVFS 199 (251)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCSTTTHHHHT
T ss_pred -----------------------------ccchHHHHHhHHHHHHHHHHHhccc----CeEEEEEeeCcccCHHHHhccC
Confidence 2789999999999999999999998 999999999999999975421
Q ss_pred ----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 ----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+|+.++|+||++| .+||+|+.
T Consensus 200 ~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~a~~itG~~i--~vDGG~ta 250 (251)
T d1vl8a_ 200 DPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQII--FVDGGWTA 250 (251)
T ss_dssp CHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhCCCcCcEE--EeCcCeeC
Confidence 268999999999999999999999999 88999864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-36 Score=292.53 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=161.2
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|+++|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 467799999999999999999999999999 899999999999988877766432
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhh-hc--CCEEEEEeCCCcc-ccccchHHHHHHHhhccc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLL-RR--HARVVNLSSSAGH-LSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l-~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~ 299 (484)
.....+.++|+..+++|+.++++++++++|.| ++ +|+||+++|.++. ..+..
T Consensus 80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~------------- 146 (244)
T d1pr9a_ 80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNH------------- 146 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTB-------------
T ss_pred EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccch-------------
Confidence 11233459999999999999999999999965 33 4899999999884 33332
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------- 372 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------- 372 (484)
.+|++||+|+++|+|++|.||+++ |||||+|+||+|+|++.+...
T Consensus 147 ------------------------~~Y~asKaal~~lt~~lA~el~~~----gIrvN~I~PG~v~T~~~~~~~~~~~~~~ 198 (244)
T d1pr9a_ 147 ------------------------SVYCSTKGALDMLTKVMALELGPH----KIRVNAVNPTVVMTSMGQATWSDPHKAK 198 (244)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCSHHHHTTSCSHHHHH
T ss_pred ------------------------hhhhhhHHHHHHHHHHHHHHhCCC----cEEEEEEeeCcCcChHHhhhccChHHHH
Confidence 789999999999999999999998 999999999999999875432
Q ss_pred ----------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 ----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.+.||+|+.++|+||+.| .+||+|+.
T Consensus 199 ~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i--~vDGG~~A 243 (244)
T d1pr9a_ 199 TMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL--PVEGGFWA 243 (244)
T ss_dssp HHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCchhCCcCCcEE--EECccHhh
Confidence 268999999999999999999999999 88999864
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-36 Score=290.84 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=156.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+|+||+||||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~-G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 79 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLD 79 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCce
Confidence 4589999999999999999999999999 899999999988877766554322
Q ss_pred ------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCccccccchHHHHHHHhhcccc
Q psy8786 235 ------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGHLSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 ------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~ 300 (484)
.....+.++|++++++|+.|+++++|+++|+|++. ++|+++||......+.
T Consensus 80 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~~~--------------- 144 (242)
T d1ulsa_ 80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNLG--------------- 144 (242)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCTT---------------
T ss_pred EEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCCCC---------------
Confidence 11233458999999999999999999999999764 5666666643333332
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN------- 373 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~------- 373 (484)
..+|++||+|+++|+|+||+|++++ |||||+|+||+|+|+|.....+
T Consensus 145 ----------------------~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~v~T~~~~~~~~~~~~~~~ 198 (242)
T d1ulsa_ 145 ----------------------QANYAASMAGVVGLTRTLALELGRW----GIRVNTLAPGFIETRMTAKVPEKVREKAI 198 (242)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTTSSSCHHHHHHHH
T ss_pred ----------------------CcchHHHHHHHHHHHHHHHHHHhhh----CcEEEEEeeCcccChhhhcCCHHHHHHHH
Confidence 2789999999999999999999998 9999999999999999876532
Q ss_pred --------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 --------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 --------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+|+|+|+.++||+|+.++|+||++| .+||+|+.
T Consensus 199 ~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i--~vDGG~t~ 240 (242)
T d1ulsa_ 199 AATPLGRAGKPLEVAYAALFLLSDESSFITGQVL--FVDGGRTI 240 (242)
T ss_dssp HTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTT
T ss_pred hcCCCCCCCCHHHHHHHHHHHhchhhCCCCCcEE--EECCCccC
Confidence 68999999999999999999999999 88998854
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=1.2e-36 Score=295.68 Aligned_cols=183 Identities=22% Similarity=0.297 Sum_probs=159.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
||+||+||||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 589999999999999999999999999 999999999998888877766543
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
.......++|+..+++|+.|+++++++++|+|++ .|+||++||.++. ..+..
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~------------ 148 (254)
T d1hdca_ 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALT------------ 148 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC------------
T ss_pred cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccch------------
Confidence 1123345899999999999999999999999865 5899999999884 33332
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-----
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN----- 373 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~----- 373 (484)
.+|++||+|+.+|+|+||.|++++ |||||+|+||+|+|+|......
T Consensus 149 -------------------------~~Y~asKaal~~lt~~lA~e~a~~----gIrVN~I~PG~v~T~~~~~~~~~~~~~ 199 (254)
T d1hdca_ 149 -------------------------SSYGASKWGVRGLSKLAAVELGTD----RIRVNSVHPGMTYTPMTAETGIRQGEG 199 (254)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHTCCCSTT
T ss_pred -------------------------hhHHHHHHHHHHHHHHHHHHhCCC----ceEEEEeeeCcccCccchhcCHHHHHH
Confidence 799999999999999999999998 9999999999999998643211
Q ss_pred ----------C-CHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 ----------V-NIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 ----------~-~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+ +|+|+|++++||+|+.++|+||++| .+||+|+.
T Consensus 200 ~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i--~vDGG~t~ 244 (254)
T d1hdca_ 200 NYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAEL--AVDGGWTT 244 (254)
T ss_dssp SCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTT
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceE--EeCCCccC
Confidence 2 6999999999999999999999999 88999865
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=1.4e-36 Score=295.89 Aligned_cols=183 Identities=20% Similarity=0.168 Sum_probs=158.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|+.++++++.+++...
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999 899999999999888877766432
Q ss_pred ------------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 ------------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 ------------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
+ ....+.++|++++++|+.|+|+++|+++|.|++ +|+|||++|.++. +.+..
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~------ 153 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQ------ 153 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSB------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCc------
Confidence 1 112245899999999999999999999999864 5899999999884 33332
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM- 371 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~- 371 (484)
.+|++||+|+.+|+|+||.|++++ |||||+|+||+|+|+|....
T Consensus 154 -------------------------------~~Y~asKaal~~lt~~lA~el~~~----gIrVN~i~PG~v~T~~~~~~~ 198 (258)
T d1iy8a_ 154 -------------------------------SGYAAAKHGVVGLTRNSAVEYGRY----GIRINAIAPGAIWTPMVENSM 198 (258)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSHHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHhCcc----CceEEEEeeCcccCHHHHHHH
Confidence 799999999999999999999998 99999999999999975321
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+..+|+|+|+.++||+|+.++|+||++| .+||+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i--~VDGG~sa 256 (258)
T d1iy8a_ 199 KQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVV--PIDGGQSA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTTTT
T ss_pred hhcCcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceE--EcCcchhc
Confidence 1268999999999999999999999999 88999865
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=1.2e-35 Score=290.80 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=160.5
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999 899999999999998888887542
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
.....+.++|+.++++|+.|+++++|+++|+|++ .|+||+++|..+. ..+..
T Consensus 82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~-------- 153 (268)
T d2bgka1 82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGV-------- 153 (268)
T ss_dssp CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTS--------
T ss_pred CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccccc--------
Confidence 0123345899999999999999999999999965 4899999998873 22221
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
...|++||+|+++|+|++|.||+++ |||||+|+||+|+|+|.....
T Consensus 154 ----------------------------~~~Y~asKaal~~lt~~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~ 201 (268)
T d2bgka1 154 ----------------------------SHVYTATKHAVLGLTTSLCTELGEY----GIRVNCVSPYIVASPLLTDVFGV 201 (268)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCCSCCCCTTSSSC
T ss_pred ----------------------------ccccchhHHHHHhCHHHHHHHhChh----CeEEEecCCCCccChHHhhhhcC
Confidence 1579999999999999999999998 999999999999999976542
Q ss_pred ------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 ------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|||+|++++||+|+.++|+||++| .+||+|+.
T Consensus 202 ~~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itGq~i--~VDGG~t~ 254 (268)
T d2bgka1 202 DSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNL--VIDGGYTR 254 (268)
T ss_dssp CHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred CHHHHHHHHHhccccCCCCcCHHHHHHHHHHHhChhhCCccCceE--EECcCccc
Confidence 268999999999999999999999999 89999965
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=5.5e-36 Score=290.57 Aligned_cols=185 Identities=22% Similarity=0.300 Sum_probs=159.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|+++.++++.+++...
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999 899999999999888888777532
Q ss_pred ---------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 ---------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 ---------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
...+.+.++|+.++++|+.|+|+++++++|+|++. ++||+++|.++. +.+..
T Consensus 82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~--------- 152 (251)
T d1zk4a1 82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSL--------- 152 (251)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTC---------
T ss_pred CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCc---------
Confidence 22344669999999999999999999999999763 589999999884 33332
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC--
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-- 373 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-- 373 (484)
..|++||+|+.+|+|++|.|++ ++++|||||+|+||+|+|+|......
T Consensus 153 ----------------------------~~Y~asKaal~~lt~~lA~e~~--l~~~gIrVN~I~PG~i~T~~~~~~~~~~ 202 (251)
T d1zk4a1 153 ----------------------------GAYNASKGAVRIMSKSAALDCA--LKDYDVRVNTVHPGYIKTPLVDDLPGAE 202 (251)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHH--HTTCSEEEEEEEECCBCCHHHHTSTTHH
T ss_pred ----------------------------hhHHHHHHHHhcchHHHHHHHh--cCCCcEEEEEEeCCCCCChhHHhcCCHH
Confidence 7899999999999999999853 12239999999999999998765432
Q ss_pred --------------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 --------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 --------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+|||+|+.++||+|+.++|+||++| .+||+|+.
T Consensus 203 ~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i--~vDGG~ta 250 (251)
T d1zk4a1 203 EAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEF--VVDGGYTA 250 (251)
T ss_dssp HHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEE--EECccccc
Confidence 58999999999999999999999999 88999864
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.8e-36 Score=292.37 Aligned_cols=182 Identities=21% Similarity=0.232 Sum_probs=152.4
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc-hhHHHHHHHHHhc----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK-KKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~-~~~~~~~~~l~~~---------------------------- 234 (484)
|+||+||||||++|||+++|++|+++ |++|++++|++ +.++++.+++...
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 89999999974 5566666555432
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
...+.+.++|+.++++|+.|+++++++++|+|++ .|+||+++|.++. +.+..
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~-------- 152 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANK-------- 152 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC--------
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCc--------
Confidence 1123356899999999999999999999999975 4899999999984 33332
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
.+|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|.....
T Consensus 153 -----------------------------~~Y~asKaal~~lt~~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~ 199 (260)
T d1x1ta1 153 -----------------------------SAYVAAKHGVVGFTKVTALETAGQ----GITANAICPGWVRTPLVEKQISA 199 (260)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCBCC---------
T ss_pred -----------------------------chhhhhhhhHHHhHHHHHHHhchh----CcEEEEEecCCCCChhhhhhhhh
Confidence 789999999999999999999987 999999999999999865321
Q ss_pred -------------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -------------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -------------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+|+.++|+||++| .+||+|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i--~vDGG~ta 259 (260)
T d1x1ta1 200 LAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTV--SVDGGWTA 259 (260)
T ss_dssp ---------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hhhhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEE--EECcchhc
Confidence 168999999999999999999999999 88999864
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-36 Score=290.85 Aligned_cols=184 Identities=20% Similarity=0.173 Sum_probs=158.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|||+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV 79 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV 79 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence 4689999999999999999999999999 999999999999888777665432
Q ss_pred ---------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhh-c--CCEEEEEeCCCcc-ccccchHHHHHHHhhccccc
Q psy8786 235 ---------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLR-R--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ---------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~-~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~ 301 (484)
.....+.++|+..+++|+.++++++|++.|.|. + +|+||+++|.++. ..+..
T Consensus 80 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~--------------- 144 (242)
T d1cyda_ 80 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNL--------------- 144 (242)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTB---------------
T ss_pred ECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCcc---------------
Confidence 112335689999999999999999999999753 2 4899999999873 33332
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--------- 372 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--------- 372 (484)
.+|++||+|+.+|+|+||.|++++ |||||+|+||+|+|+|.+...
T Consensus 145 ----------------------~~Y~asKaal~~lt~~lA~e~~~~----gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~ 198 (242)
T d1cyda_ 145 ----------------------ITYSSTKGAMTMLTKAMAMELGPH----KIRVNSVNPTVVLTDMGKKVSADPEFARKL 198 (242)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBTTHHHHHHTCCHHHHHHH
T ss_pred ----------------------ccccchHHHHHHHHHHHHHHhCcc----CeecccCCCCCccCHHHHhhcCCHHHHHHH
Confidence 789999999999999999999998 999999999999999865432
Q ss_pred --------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 --------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 --------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|||+|+.+.||+|+.++|+||++| .+||+|+.
T Consensus 199 ~~~~pl~R~~~peeva~~v~fL~S~~s~~itG~~i--~vDGG~~a 241 (242)
T d1cyda_ 199 KERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGI--LVDAGYLA 241 (242)
T ss_dssp HHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEE--EESTTGGG
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCceE--EeCcchhc
Confidence 278999999999999999999999999 78999864
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=4.5e-36 Score=291.54 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=159.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 479999999999999999999999999 899999999999998888887543
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhccc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~ 299 (484)
.....+.++|++++++|+.|+|+++++++|+|++ +|+|||++|.++. +.+..
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~~------------- 148 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQY------------- 148 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTB-------------
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCcccc-------------
Confidence 2234456999999999999999999999999975 5999999999884 33332
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------- 372 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------- 372 (484)
.+|++||+|+.+|+|++|+|++++ ..|||||+|+||+|+|+|.+...
T Consensus 149 ------------------------~~Y~asKaal~~lt~~lA~e~~~~--g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~ 202 (253)
T d1hxha_ 149 ------------------------AGYSASKAAVSALTRAAALSCRKQ--GYAIRVNSIHPDGIYTPMMQASLPKGVSKE 202 (253)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEESEECCHHHHHHSCTTCCHH
T ss_pred ------------------------ccccchhHHHHHHHHHHHHHHhhc--CCCEEEEEEeECCCcCHhHHhhCcchhhHH
Confidence 789999999999999999999985 11599999999999999753211
Q ss_pred -------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 -------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 -------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|||+|+.++||+|+.++|+||++| .+||+|.
T Consensus 203 ~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i--~VDGG~~ 249 (253)
T d1hxha_ 203 MVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSEL--HADNSIL 249 (253)
T ss_dssp HHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEE--EESSSCT
T ss_pred HHHhCccccccCCCCCHHHHHHHHHHHhChhhCCCcCcEE--EECccHh
Confidence 157999999999999999999999999 7899874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=9.2e-36 Score=288.33 Aligned_cols=182 Identities=19% Similarity=0.182 Sum_probs=147.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~~~~~~l~~~--------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++ .++..++....
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVE-GADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999 8999999998643 22222222111
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
...+.+.++|+.++++|+.|+++++|+++|+|++ +|+|||++|.++. +.+..
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~----------- 149 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAY----------- 149 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSC-----------
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCccc-----------
Confidence 1123355999999999999999999999999965 4899999999884 33332
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----- 372 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----- 372 (484)
..|++||+|+++|+|+||.|++++ |||||+|+||+|+|++.+...
T Consensus 150 --------------------------~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~i~T~~~~~~~~~~~~ 199 (247)
T d2ew8a1 150 --------------------------THYISTKAANIGFTRALASDLGKD----GITVNAIAPSLVRTATTEASALSAMF 199 (247)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCC--------------
T ss_pred --------------------------ccchhhhccHHHHHHHHHHHhccc----CeEEEEEeeCCCCCccccccccchhH
Confidence 789999999999999999999998 999999999999999875431
Q ss_pred ------------CCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 373 ------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|||+|+.++||+|+.++|+||++| .+||+++
T Consensus 200 ~~~~~~~~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i--~vDGG~~ 245 (247)
T d2ew8a1 200 DVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTL--AVDGGMV 245 (247)
T ss_dssp ----CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEE--EESSSCC
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHhCchhcCCcCCeE--EECCCEe
Confidence 168999999999999999999999999 8899885
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=6.9e-36 Score=291.53 Aligned_cols=186 Identities=19% Similarity=0.199 Sum_probs=158.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-hHHHHHHHHHhc-------------------------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-KGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-~~~~~~~~l~~~------------------------- 234 (484)
..||+||+||||||++|||+++|++|+++ |++|++++|+.+ .++++.++++..
T Consensus 2 ~~dL~gK~alITGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 2 YKDLEGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp CGGGTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999 899999999854 566666666543
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC---CEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH---ARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~---grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
...+.+.++|++++++|+.|+++++|+++|+|++. ++||++||.++. +.+..
T Consensus 81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~----- 155 (261)
T d1geea_ 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLF----- 155 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTC-----
T ss_pred HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccc-----
Confidence 11223568999999999999999999999999643 469999999884 33332
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
.+|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|....
T Consensus 156 --------------------------------~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~I~PG~v~T~~~~~~ 199 (261)
T d1geea_ 156 --------------------------------VHYAASKGGMKLMTETLALEYAPK----GIRVNNIGPGAINTPINAEK 199 (261)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCSGGGHHH
T ss_pred --------------------------------cccccCCccchhhHHHHHHHhhhh----CcEEEEEeeCcCcCHhHhhh
Confidence 789999999999999999999998 99999999999999986432
Q ss_pred -----------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 -----------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 -----------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
+..+|+|+|++++||+|+.++|+||++| .+||+++..
T Consensus 200 ~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i--~vDGG~sl~ 253 (261)
T d1geea_ 200 FADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITL--FADGGMTLY 253 (261)
T ss_dssp HHSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGGC
T ss_pred cCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeE--EECCCeeCC
Confidence 1269999999999999999999999999 899999763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-36 Score=293.07 Aligned_cols=182 Identities=20% Similarity=0.262 Sum_probs=156.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||++|||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD 81 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 479999999999999999999999999 899999999998888777665432
Q ss_pred ------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHHHhhccc
Q psy8786 235 ------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKRLRQLRE 299 (484)
Q Consensus 235 ------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~ 299 (484)
+ ....+.++|+.++++|+.|+++++|+++|+|++ +|+||++||.++. ..+..
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~~~------------- 148 (250)
T d1ydea1 82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQA------------- 148 (250)
T ss_dssp EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTC-------------
T ss_pred EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccccCc-------------
Confidence 1 112345889999999999999999999999976 4899999999883 33332
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------- 371 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------- 371 (484)
.+|++||+|+++|+|+||+|++++ |||||+|+||+|+|+|.+..
T Consensus 149 ------------------------~~Y~asKaal~~lt~~lA~e~a~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~~ 200 (250)
T d1ydea1 149 ------------------------VPYVATKGAVTAMTKALALDESPY----GVRVNCISPGNIWTPLWEELAALMPDPR 200 (250)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECSBCCHHHHHHHTTSSSHH
T ss_pred ------------------------chhHHHHhhHHHHHHHHHHHhccc----CeEEEEEeeCCCCChhHHHHhhcCCCHH
Confidence 799999999999999999999998 99999999999999986422
Q ss_pred -------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+..+|+|+|+++.||+|+ ++|+||++| .+||++..
T Consensus 201 ~~~~~~~~~~pl~R~g~p~eva~~v~fL~Sd-a~~itG~~i--~vDGG~~l 248 (250)
T d1ydea1 201 ASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIEL--LVTGGAEL 248 (250)
T ss_dssp HHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEE--EESTTTTS
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cCCCcCCeE--EECCCccc
Confidence 126999999999999996 899999999 88988753
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.2e-36 Score=288.54 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=154.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
|+||+||||||++|||+++|++|+++ |++|++++|+++..+ ..+++...
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 80 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFARE-GALVALCDLRPEGKE-VAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVL 80 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTHHH-HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHH-HHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeE
Confidence 69999999999999999999999999 899999999876533 33333221
Q ss_pred ----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhccccc
Q psy8786 235 ----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~ 301 (484)
...+.+.++|++++++|+.|+|+++|+++|+|++ +|+||+++|.++. +.+..
T Consensus 81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~--------------- 145 (248)
T d2d1ya1 81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQEN--------------- 145 (248)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTB---------------
T ss_pred EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccccccc---------------
Confidence 2234466999999999999999999999999976 4899999999984 33332
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---------- 371 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---------- 371 (484)
.+|++||+|+++|+|++|+|++++ |||||+|+||+|+|++....
T Consensus 146 ----------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~ 199 (248)
T d2d1ya1 146 ----------------------AAYNASKGGLVNLTRSLALDLAPL----RIRVNAVAPGAIATEAVLEAIALSPDPERT 199 (248)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHHHC--------
T ss_pred ----------------------chhHHHHHHHHHHHHHHHHHhhhh----CcEEEEEeeCCCCCchHHHHhhcCCCHHHH
Confidence 789999999999999999999998 99999999999999875321
Q ss_pred -----------CCCCHHhHHHHHHHHHhhhccccccccccccccceeecc
Q psy8786 372 -----------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 372 -----------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~~ 410 (484)
+..+|+|+|+.+.||+|+.++|+||+.| .+||+++..
T Consensus 200 ~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i--~vDGG~tas 247 (248)
T d2d1ya1 200 RRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAIL--PVDGGMTAS 247 (248)
T ss_dssp CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGGB
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEE--EcCcCcccc
Confidence 0158999999999999999999999999 889998753
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=5e-36 Score=291.65 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=157.3
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVRE-GARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGS 79 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHT-TEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4589999999999999999999999999 899999999999988888877543
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhh-hc--CCEEEEEeCCCcc-ccccchHHHHHHHhh
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLL-RR--HARVVNLSSSAGH-LSQITNLELKKRLRQ 296 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l-~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~ 296 (484)
.....+.++|+..+++|+.|+++++++++|.| ++ +|+||++||.++. +.+..
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~---------- 149 (256)
T d1k2wa_ 80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALV---------- 149 (256)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTC----------
T ss_pred ccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccc----------
Confidence 11223459999999999999999999999875 32 4899999999884 33332
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
.+|++||+|+++|+|++|.||+++ |||||+|+||+|+|++.+..
T Consensus 150 ---------------------------~~Y~asKaal~~lt~~lA~el~~~----gIrVN~V~PG~i~T~~~~~~~~~~~ 198 (256)
T d1k2wa_ 150 ---------------------------GVYCATKAAVISLTQSAGLNLIRH----GINVNAIAPGVVDGEHWDGVDAKFA 198 (256)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCTTHHHHHHHHH
T ss_pred ---------------------------cchhhhhhHHHHHHHHHHHHhccc----CeEEEEEecCCCCchhhhhhhhhhh
Confidence 799999999999999999999998 99999999999999985321
Q ss_pred ---------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ---------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ---------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
+..+|+|+|+.++||+|+.++|+||+.| .+|||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i--~vDGG~ 253 (256)
T d1k2wa_ 199 DYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTY--NVDGGN 253 (256)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGTTCCSCEE--EESTTS
T ss_pred hhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCceE--EECcch
Confidence 1268999999999999999999999999 788874
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=3.3e-35 Score=286.19 Aligned_cols=184 Identities=22% Similarity=0.303 Sum_probs=157.6
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+||+||+||||||++|||+++|++|+++ |++|++++|++++++++.++++..
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999 899999999999988888877653
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKR 293 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~ 293 (484)
.....+.++|+.++++|+.+++.+++++.|.|++ .|+||+++|.++ .+.+..
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~------- 153 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSV------- 153 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTC-------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccc-------
Confidence 2223456899999999999999999999999865 589999999998 333332
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
..|+++|+|+++|+|.+|+|++++ |||||+|+||+|+|+|.....
T Consensus 154 ------------------------------~~Y~~sK~al~~lt~~lA~el~~~----gIrvN~I~PG~i~T~~~~~~~~ 199 (258)
T d1ae1a_ 154 ------------------------------SLYSASKGAINQMTKSLACEWAKD----NIRVNSVAPGVILTPLVETAIK 199 (258)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBC---------
T ss_pred ------------------------------hhHHHHHHHHHHHHHHHHHhcCcC----cEEEEEEeeCcccCcchhhhhh
Confidence 799999999999999999999998 999999999999999875442
Q ss_pred --------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 --------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 --------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+++.||+|+.++|+||+.| .+||+|++
T Consensus 200 ~~~~~~~~~~~~~~~~plgR~~~pediA~~v~fL~S~~s~~itG~~i--~vDGG~s~ 254 (258)
T d1ae1a_ 200 KNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQII--WADGGFTA 254 (258)
T ss_dssp ----CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCcEE--EeCCCeec
Confidence 159999999999999999999999999 89999965
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-35 Score=287.75 Aligned_cols=183 Identities=21% Similarity=0.264 Sum_probs=153.7
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 369999999999999999999999999 899999999999999888887542
Q ss_pred -------------C----------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCc-c-ccccchH
Q psy8786 235 -------------A----------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAG-H-LSQITNL 288 (484)
Q Consensus 235 -------------~----------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag-~-~~~~~~~ 288 (484)
+ ....+.++|+..+++|+.|++.++++++|+|++ +|++|+++|..+ . +.+.
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~--- 157 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPD--- 157 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTT---
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCCC---
Confidence 0 111245889999999999999999999999976 478888888764 3 3322
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
...|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|.
T Consensus 158 ----------------------------------~~~Y~asKaal~~lt~~lA~el~~~----gIrVN~V~PG~v~T~~~ 199 (264)
T d1spxa_ 158 ----------------------------------FPYYSIAKAAIDQYTRNTAIDLIQH----GIRVNSISPGLVATGFG 199 (264)
T ss_dssp ----------------------------------SHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCCCC-
T ss_pred ----------------------------------chhhhhhhhhHHHHHHHHHHHhccc----CeEEEEEeeCCCCCcch
Confidence 2789999999999999999999998 99999999999999986
Q ss_pred cCCC------------------------CCCHHhHHHHHHHHHhh-hccccccccccccccceeec
Q psy8786 369 SFMG------------------------NVNIFDDSSTFNAFERV-ISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 369 ~~~~------------------------~~~peevA~~~~~L~s~-~a~~itG~~i~~~~~g~~~~ 409 (484)
.... .++|+|+|++++||+|+ .++|+||+.| .+||+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~~s~~itG~~i--~vDGG~sl 263 (264)
T d1spxa_ 200 SAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQL--VVDGGSSL 263 (264)
T ss_dssp -------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE--EESTTGGG
T ss_pred hccCCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCceE--EeCCChhh
Confidence 5431 15899999999999995 5899999999 88998864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.8e-35 Score=284.59 Aligned_cols=182 Identities=21% Similarity=0.250 Sum_probs=152.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----------------hHHHHHHHHHhc-----------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----------------KGAEAVQVLKDR----------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----------------~~~~~~~~l~~~----------- 234 (484)
++|+||+||||||++|||+++|++|+++ |++|++++|+++ ..+++++++.+.
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 81 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA 81 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeee
Confidence 5689999999999999999999999999 999999999653 234444444433
Q ss_pred ------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHHHHhhccccccccc
Q psy8786 235 ------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 ------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
.....+.++|+.++++|+.+++.++++++|.|++. |+|||+||.++. +.+..
T Consensus 82 G~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~------------------- 142 (237)
T d1uzma1 82 GLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQ------------------- 142 (237)
T ss_dssp SCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CC-------------------
T ss_pred cccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCccc-------------------
Confidence 22344569999999999999999999999999754 799999999984 33322
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------------- 372 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------------- 372 (484)
.+|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|.+...
T Consensus 143 ------------------~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl 200 (237)
T d1uzma1 143 ------------------ANYAASKAGVIGMARSIARELSKA----NVTANVVAPGYIDTDMTRALDERIQQGALQFIPA 200 (237)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTT
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhhhhcC----CceeeeeeeCcCCChhhhccCHHHHHHHHhcCCC
Confidence 799999999999999999999998 999999999999999876442
Q ss_pred --CCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 373 --NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 373 --~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
..+|||+|+.+.||+|+.++|+||++| .+||++
T Consensus 201 ~R~~~pedvA~~v~fL~S~~s~~itG~~i--~vdGG~ 235 (237)
T d1uzma1 201 KRVGTPAEVAGVVSFLASEDASYISGAVI--PVDGGM 235 (237)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTT
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcCCeE--EECCCC
Confidence 268999999999999999999999999 778875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=1.4e-35 Score=289.07 Aligned_cols=180 Identities=19% Similarity=0.173 Sum_probs=155.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|+.|+++ |++|++++|++++++++.++++..
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 369999999999999999999999999 899999999999998888887643
Q ss_pred ----------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHH
Q psy8786 235 ----------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRL 294 (484)
Q Consensus 235 ----------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~ 294 (484)
+ ..+.+.++|+.++++|+.++++++++++|+|++ +|+||+++|.++ .+.+..
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~-------- 152 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNM-------- 152 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTB--------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcch--------
Confidence 1 112345899999999999999999999999854 589999999988 443332
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
.+|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|....
T Consensus 153 -----------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~v~T~~~~~~~~~ 199 (260)
T d1zema1 153 -----------------------------AAYGTSKGAIIALTETAALDLAPY----NIRVNAISPGYMGPGFMWERQVE 199 (260)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCSSHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHhhhh----CCEEEEeccCcccCcchhhcchh
Confidence 789999999999999999999998 99999999999999974210
Q ss_pred ----------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 372 ----------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 372 ----------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
+.++|+|+|+.++||+|+.++|+||++| .+||+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i--~VDGG 260 (260)
T d1zema1 200 LQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNL--PIAGG 260 (260)
T ss_dssp HHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE--EESCC
T ss_pred hhhhhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeE--EeCCC
Confidence 1268999999999999999999999999 66764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.3e-35 Score=284.55 Aligned_cols=186 Identities=20% Similarity=0.191 Sum_probs=151.1
Q ss_pred CCCCCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------
Q psy8786 180 GSVDPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------- 234 (484)
|.+||+||++|||||++ |||+++|++|+++ |++|++++|+++..+++.+.....
T Consensus 2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (256)
T d1ulua_ 2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGV 80 (256)
T ss_dssp EEECCTTCEEEEESCCCSSSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHH
Confidence 35789999999999886 9999999999999 899999999876544433322211
Q ss_pred ------------C------------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHH
Q psy8786 235 ------------A------------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLE 289 (484)
Q Consensus 235 ------------~------------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~ 289 (484)
. ..+...++|+..+++|+.+++.+++++.|+|+++|+||+++|..+. ..+..
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~~--- 157 (256)
T d1ulua_ 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKY--- 157 (256)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTC---
T ss_pred HHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCCCc---
Confidence 0 1123357899999999999999999999999999999999999883 33332
Q ss_pred HHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCcc
Q psy8786 290 LKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSS 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~ 369 (484)
.+|++||+|+++|+|++|.||+++ |||||+|+||+|+|++..
T Consensus 158 ----------------------------------~~Y~asKaal~~ltr~lA~ela~~----gIrVN~I~PG~i~t~~~~ 199 (256)
T d1ulua_ 158 ----------------------------------NVMAIAKAALEASVRYLAYELGPK----GVRVNAISAGPVRTVAAR 199 (256)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCC------
T ss_pred ----------------------------------hHHHHHHHHHHHHHHHHHHHhccc----CCEEeeeccceeeecccc
Confidence 789999999999999999999998 999999999999999876
Q ss_pred CCC-----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 370 FMG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 370 ~~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
... ..+|||+|++++||+|+.++|+||++| .+||+|.+
T Consensus 200 ~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i--~VDGG~~~ 254 (256)
T d1ulua_ 200 SIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVV--YVDAGYHI 254 (256)
T ss_dssp ----CHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred chhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCCeE--EECcCEeC
Confidence 542 279999999999999999999999999 88999864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=7.7e-35 Score=286.27 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=155.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+|+||+||||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAE-GAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence 4589999999999999999999999999 899999999999888877776543
Q ss_pred --------C-----------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCcc-ccccchHHHHHH
Q psy8786 235 --------A-----------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAGH-LSQITNLELKKR 293 (484)
Q Consensus 235 --------~-----------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag~-~~~~~~~~~~~~ 293 (484)
+ ..+..++.|++++++|+.|+++++|+++|+|++ +|+||+++|.++. +.+..
T Consensus 80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~~~~------- 152 (276)
T d1bdba_ 80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGG------- 152 (276)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTTSSC-------
T ss_pred cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCCCCC-------
Confidence 0 012233579999999999999999999999964 6999999998873 33322
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG- 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~- 372 (484)
..|++||+|+++|||+||.|+++ +||||+|+||+|+|+|.....
T Consensus 153 ------------------------------~~Y~asKaal~~ltr~lA~ela~-----~IrVN~I~PG~i~T~~~~~~~~ 197 (276)
T d1bdba_ 153 ------------------------------PLYTAAKHAIVGLVRELAFELAP-----YVRVNGVGSGGINSDLRGPSSL 197 (276)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECCCCSCCCCCGGG
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhc-----ceEEcccCCCCEecCcCCccch
Confidence 78999999999999999999974 599999999999999853210
Q ss_pred ------------------------CCCHHhHHHHHHHHHhh-hccccccccccccccceeec
Q psy8786 373 ------------------------NVNIFDDSSTFNAFERV-ISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ------------------------~~~peevA~~~~~L~s~-~a~~itG~~i~~~~~g~~~~ 409 (484)
.++|+|+|+.++||+|+ .++|+||+.| .+||++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i--~VDGG~~~ 257 (276)
T d1bdba_ 198 GMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALL--NYDGGLGV 257 (276)
T ss_dssp C---------CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEE--EESSSGGG
T ss_pred hhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEE--EECcChhh
Confidence 16899999999999984 7999999999 88999865
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=5.8e-35 Score=286.54 Aligned_cols=184 Identities=21% Similarity=0.226 Sum_probs=155.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++.+.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999 899999999999999888887542
Q ss_pred -------------CC----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCC-Ccc-ccccchH
Q psy8786 235 -------------AS----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSS-AGH-LSQITNL 288 (484)
Q Consensus 235 -------------~~----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~-ag~-~~~~~~~ 288 (484)
+. .+...+.|+.++++|+.|++.++++++|+|++ +|++|+++|. ++. +.+..
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~~-- 158 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDF-- 158 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSS--
T ss_pred HHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCCCc--
Confidence 00 11234679999999999999999999999965 4777777775 443 33322
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
..|++||+|+++|+|+||.||+++ |||||+|+||+|+|+|.
T Consensus 159 -----------------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i~T~~~ 199 (272)
T d1xkqa_ 159 -----------------------------------LYYAIAKAALDQYTRSTAIDLAKF----GIRVNSVSPGMVETGFT 199 (272)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCBCSSHH
T ss_pred -----------------------------------chhhhHHHHHHHHHHHHHHHhccc----CeEEEEEeeCCCcchhh
Confidence 789999999999999999999988 99999999999999986
Q ss_pred cCCC------------------------CCCHHhHHHHHHHHHhhh-ccccccccccccccceeecc
Q psy8786 369 SFMG------------------------NVNIFDDSSTFNAFERVI-SHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 369 ~~~~------------------------~~~peevA~~~~~L~s~~-a~~itG~~i~~~~~g~~~~~ 410 (484)
.... .++|+|+|++++||+|++ +.|+||++| .+||+++.-
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v~fL~S~~as~~iTG~~i--~vDGG~~l~ 264 (272)
T d1xkqa_ 200 NAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSI--VADGGTSLV 264 (272)
T ss_dssp HHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE--EESTTGGGC
T ss_pred hccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcchhCCccCeEE--EeCcCHHHh
Confidence 4321 268999999999999976 579999999 899998764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=5.4e-35 Score=284.86 Aligned_cols=194 Identities=16% Similarity=0.240 Sum_probs=159.5
Q ss_pred CCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 180 GSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 180 ~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
|+++|+||+||||||++|||+++|++|+++ |++|++++|+.+++++..+++.+.
T Consensus 3 ~~m~l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 3 FTISFVNKTIIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQI 81 (260)
T ss_dssp EEECCTTEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999 999999999998888777766432
Q ss_pred --------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHH
Q psy8786 235 --------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 --------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
...+.+.++|++.+++|+.|++++++++.|+|.+ +++|++++|..........
T Consensus 82 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~---- 157 (260)
T d1h5qa_ 82 DADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS---- 157 (260)
T ss_dssp HHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----
T ss_pred HHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc----
Confidence 1122355899999999999999999999999842 3677777776653221110
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
.....+...|++||+|+.+|+|++|.||+++ |||||+|+||+|+|++....
T Consensus 158 -------------------------~~~~~~~~~Y~asKaal~~lt~~lA~el~~~----gIrvN~I~PG~i~T~~~~~~ 208 (260)
T d1h5qa_ 158 -------------------------LNGSLTQVFYNSSKAACSNLVKGLAAEWASA----GIRVNALSPGYVNTDQTAHM 208 (260)
T ss_dssp -------------------------TTEECSCHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCGGGGGS
T ss_pred -------------------------cccCccccchhhhhhhHHHHHHHHHHHhchh----CeEEeecCCCcccCcchhcc
Confidence 0000012789999999999999999999998 99999999999999997655
Q ss_pred CC---------------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 GN---------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ~~---------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+ ++|||+|+.++||+|+.++|+||++| .+||+|.+
T Consensus 209 ~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i--~VDGG~~~ 259 (260)
T d1h5qa_ 209 DKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEY--FIDGGQLI 259 (260)
T ss_dssp CHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE--EECTTGGG
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcchhCCCcCceE--EECCCeec
Confidence 32 68999999999999999999999999 88999864
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.3e-35 Score=286.97 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=155.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
.||++|||||++|||+++|++|+++ |++|++++|++++++++.+++++.
T Consensus 1 DgKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3799999999999999999999999 899999999999999888888653
Q ss_pred --------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhh--h-c-CCEEEEEeCCCcc-ccccchHHHHHHHh
Q psy8786 235 --------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLL--R-R-HARVVNLSSSAGH-LSQITNLELKKRLR 295 (484)
Q Consensus 235 --------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l--~-~-~grIV~iSS~ag~-~~~~~~~~~~~~~~ 295 (484)
...+.+.++|+.++++|+.|+++++|+++|+| + + .|+||+++|..+. +.+..
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~--------- 150 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHA--------- 150 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTC---------
T ss_pred CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccc---------
Confidence 11233568999999999999999999999974 2 2 3799999999883 33332
Q ss_pred hccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC----
Q psy8786 296 QLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM---- 371 (484)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~---- 371 (484)
.+|++||+|+.+|+|+||.|++++ |||||+|+||+|+|+|....
T Consensus 151 ----------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~~ 198 (257)
T d2rhca1 151 ----------------------------APYSASKHGVVGFTKALGLELART----GITVNAVCPGFVETPMAASVREHY 198 (257)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHTTTS----EEEEEEEEECSBCSHHHHHHHHHH
T ss_pred ----------------------------hhHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEeeCCCCCHHHHHHHhhh
Confidence 789999999999999999999887 99999999999999985421
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+..+|+|+|+.++||+|+.++|+||+.| .+||++.
T Consensus 199 ~~~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL~S~~s~~itG~~i--~vDGG~~ 255 (257)
T d2rhca1 199 SDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQAL--NVCGGLG 255 (257)
T ss_dssp HHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTCC
T ss_pred hhhcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceE--EECcCcc
Confidence 1268999999999999999999999999 7888864
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=7e-35 Score=286.26 Aligned_cols=184 Identities=21% Similarity=0.190 Sum_probs=155.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++.+.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999 899999999999998888877542
Q ss_pred -------------CC--------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHH
Q psy8786 235 -------------AS--------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLEL 290 (484)
Q Consensus 235 -------------~~--------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~ 290 (484)
+. ...+.++|+.++++|+.++|.++|+++|+|+++ ++|+++||.++. ..+.
T Consensus 80 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~----- 154 (274)
T d1xhla_ 80 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSG----- 154 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTT-----
T ss_pred HHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCC-----
Confidence 10 111347899999999999999999999999653 677777777663 3222
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
..+|++||+|+++|||++|.|++++ |||||+|+||+|+|++...
T Consensus 155 --------------------------------~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~i~T~~~~~ 198 (274)
T d1xhla_ 155 --------------------------------YPYYACAKAALDQYTRCTAIDLIQH----GVRVNSVSPGAVATGFMGA 198 (274)
T ss_dssp --------------------------------SHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBCSSHHHH
T ss_pred --------------------------------CceehhhhhHHHHHHHHHHHHHhHh----CCceeeeccCCCcCchhhh
Confidence 2789999999999999999999998 9999999999999997543
Q ss_pred CC------------------------CCCHHhHHHHHHHHHhh-hccccccccccccccceeecc
Q psy8786 371 MG------------------------NVNIFDDSSTFNAFERV-ISHFLIGQQINTFIPAIYTVP 410 (484)
Q Consensus 371 ~~------------------------~~~peevA~~~~~L~s~-~a~~itG~~i~~~~~g~~~~~ 410 (484)
.. .++|+|+|+.++||+|+ .++|+||++| .+||+++.-
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL~S~d~s~~itG~~i--~vDGG~~l~ 261 (274)
T d1xhla_ 199 MGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSI--VADGGSTLV 261 (274)
T ss_dssp TTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE--EESTTGGGC
T ss_pred hcccchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCCccccCccCcEE--EeCcCHHHh
Confidence 21 26899999999999995 6999999999 899998753
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-34 Score=285.97 Aligned_cols=184 Identities=20% Similarity=0.200 Sum_probs=157.5
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
..|+||+||||||++|||+++|++|+++ |++|++++|+.++++++.+++...
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~-Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 3479999999999999999999999999 899999999999988888877532
Q ss_pred ----------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHH
Q psy8786 235 ----------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLEL 290 (484)
Q Consensus 235 ----------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~ 290 (484)
.......++|+..+++|+.|+++++++++|.|++ +++||++|+......+..
T Consensus 87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~~~~~---- 162 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLA---- 162 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCCTTC----
T ss_pred HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccccccccc----
Confidence 1122345899999999999999999999999865 478888866443333332
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSF 370 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~ 370 (484)
..|++||+|+++|+|++|.|++++ |||||+|+||+|+|++...
T Consensus 163 ---------------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i~T~~~~~ 205 (297)
T d1yxma1 163 ---------------------------------VHSGAARAGVYNLTKSLALEWACS----GIRINCVAPGVIYSQTAVE 205 (297)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEECSBCCTGGGT
T ss_pred ---------------------------------ccchhHHHHHHHHHHHHHHHhccc----CceEEEeeeCcCcCcchhh
Confidence 789999999999999999999998 9999999999999998643
Q ss_pred CC-------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 371 MG-------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 371 ~~-------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.. .++|+|+|++++||+|+.++|+||++| .+||++++
T Consensus 206 ~~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i--~VDGG~sl 261 (297)
T d1yxma1 206 NYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSV--DVDGGRSL 261 (297)
T ss_dssp TSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCcEE--EeCcChhh
Confidence 21 168999999999999999999999999 88999865
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=6.6e-35 Score=283.52 Aligned_cols=179 Identities=20% Similarity=0.225 Sum_probs=155.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
|+||||||++|||+++|++|+++ |++|++++|++++++++.+++++.
T Consensus 2 KValITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 88999999999999999999999 899999999999999888888653
Q ss_pred ------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchHHHHHHHhhcc
Q psy8786 235 ------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 ------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~ 298 (484)
.....+.++|++++++|+.|+++++|+++|+|.+ +++||++||.++. +.+..
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~------------ 148 (255)
T d1gega_ 81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPEL------------ 148 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTB------------
T ss_pred EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCccc------------
Confidence 1123356899999999999999999999997643 3789999999883 33332
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------- 371 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------- 371 (484)
..|++||+|+++|+|+||.|++++ |||||+|+||+|+|+|+...
T Consensus 149 -------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~ 199 (255)
T d1gega_ 149 -------------------------AVYSSSKFAVRGLTQTAARDLAPL----GITVNGYCPGIVKTPMWAEIDRQVSEA 199 (255)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBSSHHHHHHHHHHHHH
T ss_pred -------------------------ccchhCHHHHHhhHHHHHHHhhhh----CcEEEEEecCcccChHHhhhhhhhHhh
Confidence 789999999999999999999998 99999999999999975321
Q ss_pred -------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 -------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 -------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+..+|+|+|+.++||+|+.++|+||+.| .+|||+..
T Consensus 200 ~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i--~vDGG~~~ 254 (255)
T d1gega_ 200 AGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSL--LIDGGMVF 254 (255)
T ss_dssp HTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESSSSSC
T ss_pred hcccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCcEE--EecCCEEe
Confidence 1268999999999999999999999999 88998753
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.5e-35 Score=281.13 Aligned_cols=182 Identities=13% Similarity=0.165 Sum_probs=153.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH------------HHHHHhc-----------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA------------VQVLKDR----------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~------------~~~l~~~----------------- 234 (484)
|+||+||||||++|||+++|++|+++ |++|++++|+++.+++. ++.+.+.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~-Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~~~~ 80 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQE-GAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGPKAG 80 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCCCCB
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecccccCCc
Confidence 58999999999999999999999999 89999999998766542 1112111
Q ss_pred CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
...+.+.++|++.+++|+.+++.++|+++|.|++ .|+||+++|..+. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~-------------------------- 134 (234)
T d1o5ia_ 81 FFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIEN-------------------------- 134 (234)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT--------------------------
T ss_pred chhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccc--------------------------
Confidence 1122356899999999999999999999999975 4899999998773 3222
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC----------------CCC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG----------------NVN 375 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~----------------~~~ 375 (484)
...|++||+|+++|+|++|+|++++ |||||+|+||+|+|++..... ..+
T Consensus 135 -----------~~~Y~asKaal~~ltk~lA~ela~~----gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~ 199 (234)
T d1o5ia_ 135 -----------LYTSNSARMALTGFLKTLSFEVAPY----GITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAK 199 (234)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBC
T ss_pred -----------cccchhHHHHHHHHHHHHHHHhccc----CeEEeecccCccchhhhhhhcCHHHHHHHHhcCCCCCCcC
Confidence 2789999999999999999999998 999999999999999865421 268
Q ss_pred HHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 376 IFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 376 peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
|||+|+.++||+|+.++|+||++| .+||+++.
T Consensus 200 pediA~~v~fL~S~~s~~itG~~i--~vDGG~s~ 231 (234)
T d1o5ia_ 200 PEEIASVVAFLCSEKASYLTGQTI--VVDGGLSK 231 (234)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEE--EESTTCCC
T ss_pred HHHHHHHHHHHhChhhcCCcCcEE--EECccccc
Confidence 999999999999999999999999 88999864
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=1.1e-34 Score=279.69 Aligned_cols=183 Identities=21% Similarity=0.183 Sum_probs=158.6
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
.|+||+||||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 369999999999999999999999999 999999999998887776665432
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~ 301 (484)
...+.+.++|+.++++|+.+++.++++++|+|++++.|+++||.+....+..
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~--------------- 145 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGL--------------- 145 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHH---------------
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCc---------------
Confidence 2233456899999999999999999999999998888888877766544432
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC--------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-------- 373 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-------- 373 (484)
..|+++|+|+++|+|+||+|++++ |||||+|+||+|+|+|.....+
T Consensus 146 ----------------------~~Y~~sK~al~~lt~~lA~el~~~----gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~ 199 (241)
T d2a4ka1 146 ----------------------AHYAAGKLGVVGLARTLALELARK----GVRVNVLLPGLIQTPMTAGLPPWAWEQEVG 199 (241)
T ss_dssp ----------------------HHHHHCSSHHHHHHHHHHHHHTTT----TCEEEEEEECSBCCGGGTTSCHHHHHHHHH
T ss_pred ----------------------cccchhhHHHHHHHHHHHHHHhHh----CCEEeeeccCcCCCHHHHhhhHhHHHHHHh
Confidence 689999999999999999999988 9999999999999999876532
Q ss_pred -------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 -------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 -------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+|+|+|++++||+|+.++|+||++| .+||+|++
T Consensus 200 ~~p~~r~~~p~dva~~v~fL~S~~s~~itG~~i--~vDGG~s~ 240 (241)
T d2a4ka1 200 ASPLGRAGRPEEVAQAALFLLSEESAYITGQAL--YVDGGRSI 240 (241)
T ss_dssp TSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTTTT
T ss_pred CCCCCCCcCHHHHHHHHHHHhcchhCCCcCceE--EeCCCccc
Confidence 69999999999999999999999999 88999864
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=8.8e-35 Score=280.92 Aligned_cols=178 Identities=21% Similarity=0.262 Sum_probs=153.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHHhc-------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~~~------------------------------- 234 (484)
++||||||++|||+++|++|+++ |++|++.+ |+++.++++.++++..
T Consensus 2 pV~lITGas~GIG~a~a~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKA-GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999 89998865 5666777777766542
Q ss_pred -------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchHHHHHHHhhcc
Q psy8786 235 -------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNLELKKRLRQLR 298 (484)
Q Consensus 235 -------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~ 298 (484)
...+.+.++|++++++|+.|+++++|+++|+|++ +|+|||+||.++ .+.+..
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~------------ 148 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ------------ 148 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC------------
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCC------------
Confidence 1123356999999999999999999999999954 589999999988 343332
Q ss_pred ccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------
Q psy8786 299 EPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------ 372 (484)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------ 372 (484)
.+|++||+|+.+|+|+||.||+++ |||||+|+||+|+|+|.+...
T Consensus 149 -------------------------~~Y~asKaal~~ltk~lA~el~~~----gIrvN~I~PG~i~T~~~~~~~~~~~~~ 199 (244)
T d1edoa_ 149 -------------------------ANYAAAKAGVIGFSKTAAREGASR----NINVNVVCPGFIASDMTAKLGEDMEKK 199 (244)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHTT----TEEEEEEEECSBCSHHHHTTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHChHHHHHHHhhh----CcEEEEEecceeccHHHHHhhHHHHHH
Confidence 789999999999999999999988 999999999999999876543
Q ss_pred ---------CCCHHhHHHHHHHHH-hhhccccccccccccccceee
Q psy8786 373 ---------NVNIFDDSSTFNAFE-RVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 373 ---------~~~peevA~~~~~L~-s~~a~~itG~~i~~~~~g~~~ 408 (484)
..+|+|+|+.+.||+ |+.++|+||++| .+|||++
T Consensus 200 ~~~~~pl~R~~~p~dvA~~v~fLa~S~~a~~itG~~i--~vdGG~s 243 (244)
T d1edoa_ 200 ILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAF--TIDGGIA 243 (244)
T ss_dssp HHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEE--EESTTTT
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHHCCchhcCCcCCeE--EeCCCee
Confidence 269999999999997 899999999999 7888875
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-34 Score=274.90 Aligned_cols=174 Identities=18% Similarity=0.204 Sum_probs=146.3
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|+++++++..+++...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV 80 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 579999999999999999999999999 899999999999988888777543
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--------CCEEEEEeCCCcc-ccccc
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--------HARVVNLSSSAGH-LSQIT 286 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--------~grIV~iSS~ag~-~~~~~ 286 (484)
.......+.|+.++++|+.+++++++++.|+|.. .|+||++||..+. +.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~ 160 (248)
T d2o23a1 81 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQ 160 (248)
T ss_dssp CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTC
T ss_pred cccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCCCc
Confidence 1112235899999999999999999999998742 4799999999883 33332
Q ss_pred hHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 287 NLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+|++||+|+++|+|+||+|++++ |||||+|+||+|+|+
T Consensus 161 -------------------------------------~~Y~asKaal~~lt~~la~e~~~~----gIrvN~I~PG~i~T~ 199 (248)
T d2o23a1 161 -------------------------------------AAYSASKGGIVGMTLPIARDLAPI----GIRVMTIAPGLFGTP 199 (248)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCCC
T ss_pred -------------------------------------hHHHHHHHHHHHHHHHHHHHhccc----CcceeeeccCceecc
Confidence 789999999999999999999998 999999999999999
Q ss_pred CccCCCC----------------CCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 367 MSSFMGN----------------VNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 367 m~~~~~~----------------~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
|.....+ ++|||+|++++||++ ++|+|||+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~pl~~R~g~peevA~~v~fL~s--~~~itGq~I~ 247 (248)
T d2o23a1 200 LLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIE--NPFLNGEVIR 247 (248)
T ss_dssp ----------CHHHHTCSSSCSCBCHHHHHHHHHHHHH--CTTCCSCEEE
T ss_pred hhhcCCHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHh--CCCCCceEeE
Confidence 8765422 589999999999996 6899999874
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=4.3e-34 Score=277.27 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=152.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------C
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------------A 235 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------------~ 235 (484)
|+|||||++|||+++|++|+++ |++|++++|+.++++++.+..... +
T Consensus 2 TAlVTGas~GiG~aiA~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg 80 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI 80 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 7999999999999999999999 899999999987776554332211 1
Q ss_pred -------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccc
Q psy8786 236 -------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 236 -------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
..+.+.++|+..+++|+.++|+++|+++|+|++ +|+|||+||.++. +.+..
T Consensus 81 ~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~------------------- 141 (252)
T d1zmta1 81 FAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKEL------------------- 141 (252)
T ss_dssp CCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTC-------------------
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccc-------------------
Confidence 112245899999999999999999999999965 5999999999884 33322
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------------- 372 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------------- 372 (484)
.+|++||+|+++|+|+||+||+++ |||||+|+||+|+|++.....
T Consensus 142 ------------------~~Y~asKaal~~lt~~lA~ela~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~ 199 (252)
T d1zmta1 142 ------------------STYTSARAGACTLANALSKELGEY----NIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVA 199 (252)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHGGG----TCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHH
T ss_pred ------------------cccccccccHHHHHHHHHHHhccc----CcEEEEEecCCCcCcchhhhhhcccccCCHHHHH
Confidence 789999999999999999999998 999999999999999876532
Q ss_pred ----------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 ----------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ----------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.++|||+|+.++||+|+.++|+||+.| .+||+|+.
T Consensus 200 ~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~iTG~~i--~vdGG~~~ 244 (252)
T d1zmta1 200 HVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVF--WLAGGFPM 244 (252)
T ss_dssp HHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEE--EESTTCCC
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeE--EECCCcee
Confidence 269999999999999999999999999 88999865
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-34 Score=280.64 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=154.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|+.|+++ |++|++++|+++++++..++....
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~-G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ 81 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNV 81 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEec
Confidence 379999999999999999999999999 899999999987766543322111
Q ss_pred -------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 -------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 -------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
...+.+.++|+..+++|+.+++.+++++.|+|.+ .|+||+++|..+...+..
T Consensus 82 ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~------------------- 142 (245)
T d2ag5a1 82 AGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVV------------------- 142 (245)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCT-------------------
T ss_pred ccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCcc-------------------
Confidence 1223456899999999999999999999998865 489999999877321111
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC--------------
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM-------------- 371 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~-------------- 371 (484)
+..+|++||+|+++|+|+||+||+++ |||||+|+||+|+|++....
T Consensus 143 ----------------~~~~Y~~sKaal~~l~r~lA~e~~~~----gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~ 202 (245)
T d2ag5a1 143 ----------------NRCVYSTTKAAVIGLTKSVAADFIQQ----GIRCNCVCPGTVDTPSLQERIQARGNPEEARNDF 202 (245)
T ss_dssp ----------------TBHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHH
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHhhhh----CcEEEEEeeceeechhhHhhhhhhhhhHHHHHHH
Confidence 12789999999999999999999998 99999999999999985421
Q ss_pred -------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+..+|+|+|+.+.||+++.++|+||++| .+||+|+
T Consensus 203 ~~~~pl~R~~~pedva~~v~fL~s~~s~~iTG~~i--~VDGG~s 244 (245)
T d2ag5a1 203 LKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPV--IIDGGWS 244 (245)
T ss_dssp HHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEE--EECTTGG
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCceE--EeCCCcC
Confidence 1268999999999999999999999999 8899985
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1e-33 Score=277.31 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=156.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc--------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~-------------------------- 234 (484)
.+|+||+||||||++|||+++|++|+++ |++|++++|+ ++.++++.+++++.
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 9999999887 45666666666543
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhh
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~ 296 (484)
.......++|+..+++|+.+++.+++++.|+|++++++++++|..+...+..
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~---------- 162 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP---------- 162 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS----------
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccccccc----------
Confidence 1123345899999999999999999999999999999999998876321111
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
....|++||+|+++|+|++|+||+++ |||||+|+||+|+|++.+..
T Consensus 163 -------------------------~~~~Y~asKaal~~ltk~lA~e~~~~----gIrVN~I~PG~v~T~~~~~~~~~~~ 213 (272)
T d1g0oa_ 163 -------------------------KHAVYSGSKGAIETFARCMAIDMADK----KITVNVVAPGGIKTDMYHAVCREYI 213 (272)
T ss_dssp -------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBSSHHHHHHGGGGS
T ss_pred -------------------------chhhHHHHHHHHHHHHHHHHHHhchh----CeEEEEEccCCcCChHHHHHHHhhh
Confidence 12789999999999999999999998 99999999999999874221
Q ss_pred -----------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceee
Q psy8786 372 -----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYT 408 (484)
Q Consensus 372 -----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~ 408 (484)
+..+|+|+|+++.||+|+.++|+||++| .+|||+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~i--~vDGG~~ 271 (272)
T d1g0oa_ 214 PNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVI--GIDGGAC 271 (272)
T ss_dssp TTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTCC
T ss_pred hcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCchhcCccCceE--eECCCCC
Confidence 1268999999999999999999999999 7888763
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1.3e-33 Score=274.80 Aligned_cols=183 Identities=23% Similarity=0.201 Sum_probs=153.0
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEe-cCchhHHHHHHHHHhc---------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTA-RDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~-R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.|+||+||||||++|||+++|++|+++ |++|++++ |+++.++++.+++.+.
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 369999999999999999999999999 99998865 4555567766666543
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhc
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~ 297 (484)
.....+.++|+..+++|+.++++++++++|+|++++++++++|..+...+..
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~~----------- 150 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIP----------- 150 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCC-----------
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCCC-----------
Confidence 1223356899999999999999999999999999999999988776221111
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC------
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM------ 371 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~------ 371 (484)
....|++||+|+++|+|+||+|++++ |||||+|+||+|+|+|.+..
T Consensus 151 ------------------------~~~~Y~asK~al~~l~r~lA~e~~~~----gIrvN~I~PG~i~T~~~~~~~~~~~~ 202 (259)
T d1ja9a_ 151 ------------------------NHALYAGSKAAVEGFCRAFAVDCGAK----GVTVNCIAPGGVKTDMFDENSWHYAP 202 (259)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEEEECCBSSHHHHHHGGGTST
T ss_pred ------------------------CchhHHHHHHHHHHHHHHHHHHHhhc----CeEEeccCcCCccChhhhhhhhhhhh
Confidence 12789999999999999999999998 99999999999999874211
Q ss_pred ----------------------CCCCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 372 ----------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 372 ----------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
+.++|+|+|++++||+|+.++|+||+.| .+|||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i--~vDGG~ 258 (259)
T d1ja9a_ 203 GGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVI--KLTGGG 258 (259)
T ss_dssp TCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTC
T ss_pred hhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCceE--EeCCCC
Confidence 1268999999999999999999999999 788876
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2e-33 Score=279.61 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=154.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc---------hhHHHHHHHHHhc------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK---------KKGAEAVQVLKDR------------------ 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~---------~~~~~~~~~l~~~------------------ 234 (484)
|+|+||+||||||++|||+++|++|+++ |++|++++|+. +.+++..+++...
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~-Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAER-GALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHH
Confidence 6789999999999999999999999999 89999987653 3455555555432
Q ss_pred -----------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCc-cccccchH
Q psy8786 235 -----------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAG-HLSQITNL 288 (484)
Q Consensus 235 -----------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag-~~~~~~~~ 288 (484)
.....+.++|+.++++|+.|+|+++|+++|+|++ +|+|||+||.++ .+.+..
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~-- 159 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQ-- 159 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC--
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCc--
Confidence 1122345899999999999999999999999965 489999999988 333332
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
..|++||+|+.+|+|+||.|++++ |||||+|+||++.|++.
T Consensus 160 -----------------------------------~~Y~asKaal~~lt~~la~E~~~~----gIrVN~I~PG~~~t~~~ 200 (302)
T d1gz6a_ 160 -----------------------------------ANYSAAKLGLLGLANTLVIEGRKN----NIHCNTIAPNAGSRMTE 200 (302)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHTGGG----TEEEEEEEEECCSTTTG
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHhcc----CCceeeeCCCCCCcchh
Confidence 799999999999999999999998 99999999999999886
Q ss_pred cCCCC-----CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 369 SFMGN-----VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 369 ~~~~~-----~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..... .+|||+|+.++||+|+.+ ++||+.| .+||+|..
T Consensus 201 ~~~~~~~~~~~~PedvA~~v~fL~S~~a-~itG~~i--~vdGG~~~ 243 (302)
T d1gz6a_ 201 TVMPEDLVEALKPEYVAPLVLWLCHESC-EENGGLF--EVGAGWIG 243 (302)
T ss_dssp GGSCHHHHHHSCGGGTHHHHHHHTSTTC-CCCSCEE--EEETTEEE
T ss_pred hcCcHhhHhcCCHHHHHHHHHHHcCCCc-CCCCcEE--EeCCCcee
Confidence 65543 789999999999999765 7899999 78888854
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=272.66 Aligned_cols=179 Identities=21% Similarity=0.244 Sum_probs=152.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
+||+||||||++|||+++|++|+++ |++|++++|+.++++++.+++.+.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999 999999999999988888877542
Q ss_pred --------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccchHHHHHHHhhcccc
Q psy8786 235 --------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITNLELKKRLRQLREP 300 (484)
Q Consensus 235 --------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~ 300 (484)
.......++|++.+++|+.+++.++++++|+|++ +|+||++||.++. +.+..
T Consensus 81 G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~-------------- 146 (254)
T d2gdza1 81 GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQ-------------- 146 (254)
T ss_dssp SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTC--------------
T ss_pred CCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCc--------------
Confidence 2223344678999999999999999999999965 3789999999983 33332
Q ss_pred ccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHH--HHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------
Q psy8786 301 VSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI--YQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------ 372 (484)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~--LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------ 372 (484)
.+|++||+|+.+|||+ |+.|++++ |||||+|+||+|+|+|.+...
T Consensus 147 -----------------------~~Y~asKaal~~ltrs~ala~e~~~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~ 199 (254)
T d2gdza1 147 -----------------------PVYCASKHGIVGFTRSAALAANLMNS----GVRLNAICPGFVNTAILESIEKEENMG 199 (254)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHTC----CEEEEEEEESCBSSHHHHGGGCHHHHG
T ss_pred -----------------------cchHHHHHHHHHHHHHHHHHHHhcCC----CEEEEEEEcCCCCChhhhhcccccccc
Confidence 7899999999999997 68899887 999999999999999875432
Q ss_pred -----------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -----------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -----------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
..+|+|+|+.++||+|+. ++||+.| .+||++..
T Consensus 200 ~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~--~itG~~i--~VdGG~~~ 249 (254)
T d2gdza1 200 QYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD--ALNGAIM--KITTSKGI 249 (254)
T ss_dssp GGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT--TCSSCEE--EEETTTEE
T ss_pred ccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHcCC--CCCCCEE--EECCCCee
Confidence 278999999999999875 5999999 78887654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=2.7e-32 Score=269.70 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=152.8
Q ss_pred CCCCCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------
Q psy8786 178 VNGSVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------- 234 (484)
Q Consensus 178 ~~~~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------- 234 (484)
|....+|+||+||||||++|||+++|++|+++ |++|++++|+.+++++..+++...
T Consensus 17 ~~~~~~l~gK~alITGas~GIG~aiA~~la~~-Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~ 95 (294)
T d1w6ua_ 17 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 95 (294)
T ss_dssp CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhh
Confidence 33457899999999999999999999999999 899999999999888887776542
Q ss_pred ----------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCcc-ccccchH
Q psy8786 235 ----------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGH-LSQITNL 288 (484)
Q Consensus 235 ----------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~-~~~~~~~ 288 (484)
.......++++..+.+|+.+.+.+.+...+.+.. ++.+++++|.++. ..+.
T Consensus 96 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~--- 172 (294)
T d1w6ua_ 96 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF--- 172 (294)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTT---
T ss_pred hhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccc---
Confidence 1122334788999999999999998887776543 3677777777663 2222
Q ss_pred HHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCc
Q psy8786 289 ELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMS 368 (484)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~ 368 (484)
..+|++||+|+++|+|++|+|++++ |||||+|+||+|+|++.
T Consensus 173 ----------------------------------~~~YsasKaal~~ltk~lA~ela~~----gIrVN~I~PG~i~T~~~ 214 (294)
T d1w6ua_ 173 ----------------------------------VVPSASAKAGVEAMSKSLAAEWGKY----GMRFNVIQPGPIKTKGA 214 (294)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCC---
T ss_pred ----------------------------------cchHHHHHHHHHHHHHHHHHHHhHh----CeEEEEEccCccccchh
Confidence 2789999999999999999999998 99999999999999986
Q ss_pred cCCC------------------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 369 SFMG------------------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 369 ~~~~------------------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.... .++|+|+|+.+.||+|+.++|+||++| .+|||+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~sd~s~~itG~~i--~vDGG~~l 271 (294)
T d1w6ua_ 215 FSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVI--KFDGGEEV 271 (294)
T ss_dssp ---CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTHHH
T ss_pred hhccCCcHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCchhcCCCCcEE--EECCChhh
Confidence 5432 169999999999999999999999999 78998754
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=1.7e-32 Score=264.05 Aligned_cols=171 Identities=21% Similarity=0.181 Sum_probs=149.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCe-------EEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGY-------IYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~-------Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
++||||||++|||+++|++|+++ |++ |++++|++++++++.++++..
T Consensus 2 ~VvlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 57999999999999999999999 776 899999999999888887653
Q ss_pred -------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHH
Q psy8786 235 -------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKK 292 (484)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~ 292 (484)
.....+.++|+.++++|+.|+++++|+++|+|++ +|+||+++|.++. +.+..
T Consensus 81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~------ 154 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHS------ 154 (240)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC------
T ss_pred HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCC------
Confidence 1122346999999999999999999999999965 5899999999984 33332
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
..|++||+|+.+|+|+|+.|++++ |||||+|+||+|+|+|+....
T Consensus 155 -------------------------------~~Y~asK~al~~lt~~la~el~~~----gIrvn~i~PG~v~T~~~~~~~ 199 (240)
T d2bd0a1 155 -------------------------------SIYCMSKFGQRGLVETMRLYARKC----NVRITDVQPGAVYTPMWGKVD 199 (240)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCBCSTTTCCCC
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHhCcC----CeEEEEeeeCcccCchhhhcC
Confidence 789999999999999999999987 999999999999999987654
Q ss_pred C------CCHHhHHHHHHHHHhhhccccccccc
Q psy8786 373 N------VNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 373 ~------~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. .+|||+|+.++||+++.+++++|+.+
T Consensus 200 ~~~~~~~~~PedvA~~v~~l~s~~~~~~~~~~~ 232 (240)
T d2bd0a1 200 DEMQALMMMPEDIAAPVVQAYLQPSRTVVEEII 232 (240)
T ss_dssp STTGGGSBCHHHHHHHHHHHHTSCTTEEEEEEE
T ss_pred HhhHhcCCCHHHHHHHHHHHHcCCccCccCCEE
Confidence 3 78999999999999999999988754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.8e-32 Score=262.04 Aligned_cols=179 Identities=19% Similarity=0.206 Sum_probs=152.4
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---------------------------- 234 (484)
+|+||+||||||++|||+++|++|+++ |++|++++|++++++++.++++..
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 489999999999999999999999999 899999999999999988888653
Q ss_pred ------------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc----CCEEEEEeCCCcc-ccccchHHHH
Q psy8786 235 ------------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR----HARVVNLSSSAGH-LSQITNLELK 291 (484)
Q Consensus 235 ------------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~----~grIV~iSS~ag~-~~~~~~~~~~ 291 (484)
.....+.++|+..+++|+.++|+++++++|.|++ +|+||+++|.++. ..+..
T Consensus 86 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~----- 160 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLS----- 160 (257)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCG-----
T ss_pred hcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCc-----
Confidence 2234557999999999999999999999998854 4899999999873 32222
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
....|++||+|+.+|+|+||.||.. ++.|||||+|+||+++|++....
T Consensus 161 ------------------------------~~~~Y~~sKaal~~ltr~la~el~~--~~~~I~vn~i~PG~i~t~~~~~~ 208 (257)
T d1xg5a_ 161 ------------------------------VTHFYSATKYAVTALTEGLRQELRE--AQTHIRATCISPGVVETQFAFKL 208 (257)
T ss_dssp ------------------------------GGHHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEEEESCBCSSHHHHH
T ss_pred ------------------------------ccHHHHHHHHHHHhCHHHHHHHHHh--CCCCEEEEEEeCCCCCChhhhhc
Confidence 1167999999999999999999831 22399999999999999986533
Q ss_pred C---------------CCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 372 G---------------NVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 372 ~---------------~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
. ..+|||+|++++||+|+.++|+|||++
T Consensus 209 ~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~a~~itG~i~ 251 (257)
T d1xg5a_ 209 HDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGDIQ 251 (257)
T ss_dssp TTTCHHHHHHHHC---CBCHHHHHHHHHHHHHSCTTEEEEEEE
T ss_pred ChhhHHHHHhcCCCCCCcCHHHHHHHHHHHhCChhcCeECCEE
Confidence 2 278999999999999999999999964
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.7e-32 Score=260.32 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=153.6
Q ss_pred CCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 184 PSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+||+||||||++ |||+++|+.|+++ |++|++++|+++..+.+.+.....
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence 6999999999998 8999999999999 999999999976554443332221
Q ss_pred --------C--C-----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHH
Q psy8786 235 --------A--S-----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKK 292 (484)
Q Consensus 235 --------~--~-----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~ 292 (484)
. . .....+.+...+.+|+.+.+.+++++.+.+++++.||++||..+ .+.+..
T Consensus 82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~------ 155 (258)
T d1qsga_ 82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNY------ 155 (258)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTT------
T ss_pred cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCc------
Confidence 0 0 01123668889999999999999999999988899999999887 433332
Q ss_pred HHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC
Q psy8786 293 RLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~ 372 (484)
..|++||+|+++|+|++|+||+++ |||||+|+||+|+|++.....
T Consensus 156 -------------------------------~~Y~~sKaal~~ltr~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~ 200 (258)
T d1qsga_ 156 -------------------------------NVMGLAKASLEANVRYMANAMGPE----GVRVNAISAGPIRTLAASGIK 200 (258)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHHHHHTTT----TEEEEEEEECCCCCTTGGGST
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHhCcc----Cceeecccccccccccccccc
Confidence 789999999999999999999987 999999999999999987643
Q ss_pred C-----------------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 N-----------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 ~-----------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
. .+|||+|+.+.||+|+.++|+||+++ .+||+|++
T Consensus 201 ~~~~~~~~~~~~~pl~R~~~peeia~~v~fL~s~~s~~itG~~i--~vDGG~~i 252 (258)
T d1qsga_ 201 DFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVV--HVDGGFSI 252 (258)
T ss_dssp THHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE--EESTTGGG
T ss_pred hhhhHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCccCceE--EECcCHHH
Confidence 2 79999999999999999999999999 88999865
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.6e-32 Score=260.92 Aligned_cols=178 Identities=20% Similarity=0.139 Sum_probs=144.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH---------------HHHHHHHhc----------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA---------------EAVQVLKDR---------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~---------------~~~~~l~~~---------------- 234 (484)
+|+||||||++|||+++|++|+++ |++|++++|+++..+ +...+....
T Consensus 1 DK~alITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAE 79 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCCCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcccccceEeeccccchhhhHHHHHhhhccccccchhhhhhccccc
Confidence 499999999999999999999999 999999999765321 111111111
Q ss_pred ----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhh--------cCCEEEEEeCCCc-cccccchHHHHHHHhhccccc
Q psy8786 235 ----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLR--------RHARVVNLSSSAG-HLSQITNLELKKRLRQLREPV 301 (484)
Q Consensus 235 ----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~--------~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~ 301 (484)
.......+.++..+++|+.+.+.+++.+.+.+. +.|+|||+||..+ .+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~--------------- 144 (241)
T d1uaya_ 80 KILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQ--------------- 144 (241)
T ss_dssp CSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTC---------------
T ss_pred cccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCc---------------
Confidence 112234578999999999999999999988743 2489999999988 443332
Q ss_pred cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC---------
Q psy8786 302 SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG--------- 372 (484)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~--------- 372 (484)
.+|++||+|+++|+|+||.||+++ |||||+|+||+|+|++.....
T Consensus 145 ----------------------~~Y~asKaal~~lt~~lA~ela~~----gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~ 198 (241)
T d1uaya_ 145 ----------------------AAYAASKGGVVALTLPAARELAGW----GIRVVTVAPGLFDTPLLQGLPEKAKASLAA 198 (241)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECSCSSHHHHTSCHHHHHHHHT
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHHHhhc----CCceeeecCCcccccccchhhhhHHHHHHh
Confidence 799999999999999999999998 999999999999999865442
Q ss_pred -------CCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 373 -------NVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 373 -------~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.++|||+|+.+.||+| ++|+||++| .+||+++.
T Consensus 199 ~~~~~~R~g~pedvA~~v~fL~s--~~~iTG~~i--~VDGG~~m 238 (241)
T d1uaya_ 199 QVPFPPRLGRPEEYAALVLHILE--NPMLNGEVV--RLDGALRM 238 (241)
T ss_dssp TCCSSCSCCCHHHHHHHHHHHHH--CTTCCSCEE--EESTTCCC
T ss_pred cCCCCCCCcCHHHHHHHHHHHHh--CCCCCCCEE--EECCcccC
Confidence 2699999999999997 579999999 78998753
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-31 Score=261.07 Aligned_cols=213 Identities=36% Similarity=0.532 Sum_probs=160.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc--------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-------------------------------- 234 (484)
+|+|||||++|||+++|++|++++|++|++++|++++++++.++++..
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iD 83 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLD 83 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCcE
Confidence 567999999999999999999876889999999999999998888754
Q ss_pred ------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcccc-
Q psy8786 235 ------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREP- 300 (484)
Q Consensus 235 ------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~- 300 (484)
.....+.++|+.++++|++|+++++++++|+|+++|+|||++|..+. ..+................
T Consensus 84 iLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~~~~ 163 (275)
T d1wmaa1 84 VLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITE 163 (275)
T ss_dssp EEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSCCH
T ss_pred EEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccccch
Confidence 22233458899999999999999999999999999999999998873 3222221111111100000
Q ss_pred -c--cccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCCCCHH
Q psy8786 301 -V--SLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGNVNIF 377 (484)
Q Consensus 301 -~--~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~~~pe 377 (484)
. ......+...........+++..+|++||+|+.+|++.++++|++++...||+||+|+||+|+|+|.+.....+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~~~~~pe 243 (275)
T d1wmaa1 164 EELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPE 243 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTTCSBCHH
T ss_pred hhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCcccCCHH
Confidence 0 0000000111111222334556789999999999999999999987667799999999999999999888888999
Q ss_pred hHHHHHHHHH--hhhccccccccc
Q psy8786 378 DDSSTFNAFE--RVISHFLIGQQI 399 (484)
Q Consensus 378 evA~~~~~L~--s~~a~~itG~~i 399 (484)
|+|++++|++ .++....+|+.+
T Consensus 244 e~A~~~~~~a~~~~~~~~~~G~~~ 267 (275)
T d1wmaa1 244 EGAETPVYLALLPPDAEGPHGQFV 267 (275)
T ss_dssp HHTHHHHHHHSCCTTCCCCCSCEE
T ss_pred HHHHHHHHHHcCChhhcCCCeEEE
Confidence 9999999987 456667788765
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.8e-31 Score=258.03 Aligned_cols=173 Identities=16% Similarity=0.184 Sum_probs=145.9
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHh---cCCCeEEEEecCchhHHHHHHHHHhc-------------------------
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCE---QFDGYIYLTARDKKKGAEAVQVLKDR------------------------- 234 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~---~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------- 234 (484)
.|+||+||||||++|||+++|++|++ + |++|++++|++++++++.+++...
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSP-GSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCT-TCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccC-CCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 57999999999999999999999996 4 889999999999999888877542
Q ss_pred -------------------C---------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC----CEEEEEeCCCcc-
Q psy8786 235 -------------------A---------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH----ARVVNLSSSAGH- 281 (484)
Q Consensus 235 -------------------~---------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~----grIV~iSS~ag~- 281 (484)
+ ....+.++|+.++++|+.|+++++++++|+|++. |+||++||.++.
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 0 0122347899999999999999999999999763 699999999883
Q ss_pred ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCC
Q psy8786 282 LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPG 361 (484)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG 361 (484)
+.+.. ..|++||+|+++|+|+||.| .+ |||||+|+||
T Consensus 162 ~~~~~-------------------------------------~~Y~asKaal~~lt~~la~e--~~----gIrVn~v~PG 198 (259)
T d1oaaa_ 162 PYKGW-------------------------------------GLYCAGKAARDMLYQVLAAE--EP----SVRVLSYAPG 198 (259)
T ss_dssp CCTTC-------------------------------------HHHHHHHHHHHHHHHHHHHH--CT----TEEEEEEECC
T ss_pred CCccc-------------------------------------hHHHHHHHHHHHHHHHHHhC--CC----CCEEEEEEcC
Confidence 33332 79999999999999999987 34 8999999999
Q ss_pred cccCCCccCC--------------------CCCCHHhHHHHHHHHHhhhcccccccccc
Q psy8786 362 YVATNMSSFM--------------------GNVNIFDDSSTFNAFERVISHFLIGQQIN 400 (484)
Q Consensus 362 ~V~T~m~~~~--------------------~~~~peevA~~~~~L~s~~a~~itG~~i~ 400 (484)
+|+|+|.+.. ...+|+|+|+.++||+++ .+|+||+.|+
T Consensus 199 ~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~-~s~~TG~~id 256 (259)
T d1oaaa_ 199 PLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK-DTFQSGAHVD 256 (259)
T ss_dssp SBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH-CCSCTTEEEE
T ss_pred CCCCHHHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhh-ccCCCCCeEE
Confidence 9999986421 126899999999999976 5799999885
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.97 E-value=4e-31 Score=256.58 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=145.1
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
+||+||+||||||++|||+++|++|+++ |++|++++|+.++.++..+.....
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~-G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999 899988888766544433221111
Q ss_pred -----------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-----CCEEEEEeCCCcc-ccccchHHHHHHHhhc
Q psy8786 235 -----------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-----HARVVNLSSSAGH-LSQITNLELKKRLRQL 297 (484)
Q Consensus 235 -----------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-----~grIV~iSS~ag~-~~~~~~~~~~~~~~~~ 297 (484)
.......+.|+.++++|+.|++.++++++|.|.+ +|+||+++|.++. +.+.
T Consensus 80 ~~~g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~------------ 147 (254)
T d1sbya1 80 DQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQ------------ 147 (254)
T ss_dssp HHHSCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT------------
T ss_pred HHcCCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCC------------
Confidence 3334456889999999999999999999999954 3899999999984 3332
Q ss_pred cccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC----
Q psy8786 298 REPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN---- 373 (484)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~---- 373 (484)
..+|++||+|+.+|+++|+.|++++ |||||+|+||+|+|+|.+....
T Consensus 148 -------------------------~~~Y~asKaal~~~t~~la~el~~~----gIrVn~I~PG~v~T~~~~~~~~~~~~ 198 (254)
T d1sbya1 148 -------------------------VPVYSASKAAVVSFTNSLAKLAPIT----GVTAYSINPGITRTPLVHTFNSWLDV 198 (254)
T ss_dssp -------------------------SHHHHHHHHHHHHHHHHHHHHHHHH----SEEEEEEEECSEESHHHHSCCCGGGS
T ss_pred -------------------------CHHHHHHHHHHHHHHHHHHhhcccc----CeEEEEEEeCCCcCccccccccchhH
Confidence 2789999999999999999999998 9999999999999998654321
Q ss_pred -------------CCHHhHHHHHHHHHhhhcccccccccccccccee
Q psy8786 374 -------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIY 407 (484)
Q Consensus 374 -------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~ 407 (484)
.+||++|+.++++.+ ...+|+++ .+||++
T Consensus 199 ~~~~~~~~~~~~~~~~e~va~~~~~~~~---~~~tG~vi--~vdgG~ 240 (254)
T d1sbya1 199 EPRVAELLLSHPTQTSEQCGQNFVKAIE---ANKNGAIW--KLDLGT 240 (254)
T ss_dssp CTTHHHHHTTSCCEEHHHHHHHHHHHHH---HCCTTCEE--EEETTE
T ss_pred HHHHHhccccCCCCCHHHHHHHHHHhhh---CCCCCCEE--EECCCE
Confidence 578999988877664 34699998 677775
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=4.5e-30 Score=258.09 Aligned_cols=181 Identities=14% Similarity=0.224 Sum_probs=145.6
Q ss_pred CCEEEEEc--CCchHHHHHHHHHHhcCCCeEEEEecCchh----------------------------------------
Q psy8786 186 ERVAVVTG--ANKGLGFGIVKSLCEQFDGYIYLTARDKKK---------------------------------------- 223 (484)
Q Consensus 186 gKvaLITG--assGIG~aiA~~La~~gga~Vvl~~R~~~~---------------------------------------- 223 (484)
+|++|||| +++|||++||++|+++ |++|++++++...
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~-GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKR-NVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHc-CCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 69999999 5689999999999999 9999998764321
Q ss_pred -------------------HHHHHHHHHhc-----------C--------CCCccHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy8786 224 -------------------GAEAVQVLKDR-----------A--------STVPFAIQAEKTILTNYLGLVRTCVFLFPL 265 (484)
Q Consensus 224 -------------------~~~~~~~l~~~-----------~--------~~~~~~~~~~~~~~vN~~g~~~l~~allp~ 265 (484)
.+++++.+.+. + ..+.+.++|+.++++|+++.+.++|+++|+
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 12233333222 0 012245899999999999999999999999
Q ss_pred hhcCCEEEEEeCCCcc-ccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHh
Q psy8786 266 LRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 344 (484)
Q Consensus 266 l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~el 344 (484)
|+++|+||++||.++. ..+.. ...|++||+|+++|+|+||.||
T Consensus 161 m~~~GsIv~iss~~~~~~~p~y------------------------------------~~~y~asKaal~~ltr~lA~El 204 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKVVPGY------------------------------------GGGMSSAKAALESDTRVLAYHL 204 (329)
T ss_dssp EEEEEEEEEEECGGGTSCCTTC------------------------------------TTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeehhccccccc------------------------------------chhhhhhhccccccchhhHHHH
Confidence 9999999999998873 33321 1579999999999999999999
Q ss_pred hh-hcCCCCeEEEEEeCCcccCCCccCC----------------------------------------------------
Q psy8786 345 DC-ELGNQDKVINAVHPGYVATNMSSFM---------------------------------------------------- 371 (484)
Q Consensus 345 a~-~~~~~gIrVNaV~PG~V~T~m~~~~---------------------------------------------------- 371 (484)
++ + |||||+|+||+|+|+..+..
T Consensus 205 a~~~----gIRVNaI~PG~i~T~a~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (329)
T d1uh5a_ 205 GRNY----NIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEY 280 (329)
T ss_dssp HHHH----CCEEEEEEECCCCCTTGGGCC------------------------------------------CHHHHHHHH
T ss_pred hccc----CcEEEEEecCcccchhhhcccchhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHH
Confidence 86 5 99999999999999432210
Q ss_pred --------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 --------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 --------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+..+|+|+|+.++||+|+.++|+||+.| .+||++.+
T Consensus 281 ~~~~~Pl~R~~~pedvA~~v~fLaSd~s~~iTGq~i--~VDGG~~~ 324 (329)
T d1uh5a_ 281 SEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTI--YVDNGLNI 324 (329)
T ss_dssp HHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred HhccCCCCCCcCHHHHHHHHHHHhCchhCCccCCeE--EECCCccc
Confidence 1279999999999999999999999999 88998854
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-30 Score=248.51 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=141.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
.+++||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999 999999999999999988888653
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
.......+.|+.++++|+.|+++++++++|+|+++ |+||++||.++. +.+..
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~-------- 153 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFL-------- 153 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHH--------
T ss_pred cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCc--------
Confidence 11223448899999999999999999999999764 799999999984 33332
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC---
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM--- 371 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~--- 371 (484)
..|++||+|+.+|+++|+.|++++ ...||+||+|+||+|+|+|.+..
T Consensus 154 -----------------------------~~Y~asKaal~~~~~~La~El~~~-~~~gI~V~~i~PG~v~T~~~~~~~~~ 203 (244)
T d1yb1a_ 154 -----------------------------LAYCSSKFAAVGFHKTLTDELAAL-QITGVKTTCLCPNFVNTGFIKNPSTS 203 (244)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHT-TCTTEEEEEEEETHHHHCSTTCTHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHhh-cCCCEEEEEEEcCCCCChhhhCcCcc
Confidence 789999999999999999999873 33489999999999999998653
Q ss_pred --CCCCHHhHHHHHHHHH
Q psy8786 372 --GNVNIFDDSSTFNAFE 387 (484)
Q Consensus 372 --~~~~peevA~~~~~L~ 387 (484)
...+||++|+.+....
T Consensus 204 ~~~~~~pe~va~~i~~~~ 221 (244)
T d1yb1a_ 204 LGPTLEPEEVVNRLMHGI 221 (244)
T ss_dssp HCCCCCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 2368999999877654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.96 E-value=1e-29 Score=250.62 Aligned_cols=188 Identities=13% Similarity=0.162 Sum_probs=152.0
Q ss_pred CCCCCCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhH---------------------------------
Q psy8786 180 GSVDPSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKG--------------------------------- 224 (484)
Q Consensus 180 ~~~~L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~--------------------------------- 224 (484)
|.+||+||++|||||++ |||+++|++|+++ |++|++++|+.+..
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDA 80 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECT
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 35789999999999875 9999999999999 99999998853211
Q ss_pred --------------------------HHHHHHHHhc-----------C--------CCCccHHHHHHHHHhhhHHHHHHH
Q psy8786 225 --------------------------AEAVQVLKDR-----------A--------STVPFAIQAEKTILTNYLGLVRTC 259 (484)
Q Consensus 225 --------------------------~~~~~~l~~~-----------~--------~~~~~~~~~~~~~~vN~~g~~~l~ 259 (484)
+++.+++.+. + ..+.+.++|+..+++|+.+++.++
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~ 160 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence 2223333221 0 112245889999999999999999
Q ss_pred HHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHH
Q psy8786 260 VFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRI 339 (484)
Q Consensus 260 ~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~ 339 (484)
+++++.++++++++++++.+....... ....|+++|+++.++++.
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------------------------------~~~~y~~aKaa~~~l~~~ 205 (297)
T d1d7oa_ 161 SHFLPIMNPGGASISLTYIASERIIPG-----------------------------------YGGGMSSAKAALESDTRV 205 (297)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSCCTT-----------------------------------CTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHhhcCCcceeeeehhhcccccc-----------------------------------cccceecccccccccccc
Confidence 999999998888888887765321111 126899999999999999
Q ss_pred HHHHhh-hhcCCCCeEEEEEeCCcccCCCccCCC-----------------CCCHHhHHHHHHHHHhhhccccccccccc
Q psy8786 340 YQKKFD-CELGNQDKVINAVHPGYVATNMSSFMG-----------------NVNIFDDSSTFNAFERVISHFLIGQQINT 401 (484)
Q Consensus 340 LA~ela-~~~~~~gIrVNaV~PG~V~T~m~~~~~-----------------~~~peevA~~~~~L~s~~a~~itG~~i~~ 401 (484)
++.+++ ++ |||||+|+||+|+|++..... ..+|||+|+.++||+|+.++|+||++|
T Consensus 206 ~a~e~~~~~----gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i-- 279 (297)
T d1d7oa_ 206 LAFEAGRKQ----NIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATI-- 279 (297)
T ss_dssp HHHHHHHHH----CCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEE--
T ss_pred cchhccccc----eEEecccccccccchhhhhccCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceE--
Confidence 999997 46 999999999999999987542 268999999999999999999999999
Q ss_pred cccceeec
Q psy8786 402 FIPAIYTV 409 (484)
Q Consensus 402 ~~~g~~~~ 409 (484)
.+||++..
T Consensus 280 ~vDGG~s~ 287 (297)
T d1d7oa_ 280 YVDNGLNS 287 (297)
T ss_dssp EESTTGGG
T ss_pred EECcCHhh
Confidence 88999864
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=5e-30 Score=245.88 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=145.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----------------HHHHHHHHHhc-------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----------------GAEAVQVLKDR------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----------------~~~~~~~l~~~------------- 234 (484)
+||+||||||++|||+++|++|+++ |++|+++++++.+ .+...+++...
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnA 79 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA 79 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECC
Confidence 5899999999999999999999999 9999998875321 11222222111
Q ss_pred C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc-ccccchHHHHHHHhhcccccccccc
Q psy8786 235 A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH-LSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 ~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
+ ......++|+..+++|+.+++.++++++|+|+++|+||++||.++. +.+..
T Consensus 80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~-------------------- 139 (236)
T d1dhra_ 80 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM-------------------- 139 (236)
T ss_dssp CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTB--------------------
T ss_pred cccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCccCC--------------------
Confidence 1 1122347899999999999999999999999999999999999883 33332
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC-------CCCHHhH
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-------NVNIFDD 379 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-------~~~peev 379 (484)
.+|++||+|+++|+|+||.|++.. +.|||||+|+||+|+|+|.+... ...|+++
T Consensus 140 -----------------~~Y~asKaal~~lt~~la~El~~~--~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~pe~v 200 (236)
T d1dhra_ 140 -----------------IGYGMAKGAVHQLCQSLAGKNSGM--PSGAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFL 200 (236)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTSTTSSC--CTTCEEEEEEESCEECHHHHHHSTTSCGGGSEEHHHH
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHhccC--CCcEEEEEEEeccCcCCcchhhCccchhhcCCCHHHH
Confidence 789999999999999999998721 23999999999999999865322 2579999
Q ss_pred HHHHHHHHhhhccccccccccccccce
Q psy8786 380 SSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 380 A~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
|+.+.+|+++.+.+++|+.+.....++
T Consensus 201 a~~~~~l~s~~~~~i~G~~i~v~~~~g 227 (236)
T d1dhra_ 201 VETFHDWITGNKRPNSGSLIQVVTTDG 227 (236)
T ss_dssp HHHHHHHHTTTTCCCTTCEEEEEEETT
T ss_pred HHHHHHHhCCCccCCCCCeEEEEEECC
Confidence 999999999999999999886444433
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4e-29 Score=244.10 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=138.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----------------------------- 234 (484)
|+||+||||||++|||+++|++|+++ |++|++++|++++++++.+++...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~-G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999 899999999999999887776432
Q ss_pred ----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-CCEEEEEeCCCc-cccccchHHHHHHHhh
Q psy8786 235 ----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-HARVVNLSSSAG-HLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-~grIV~iSS~ag-~~~~~~~~~~~~~~~~ 296 (484)
.....+.++++.++++|+.|++.+++.++|+|++ +|+||+++|.++ .+.+..
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~~---------- 160 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV---------- 160 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTC----------
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCCCc----------
Confidence 2223456899999999999999999999999975 689999999998 443332
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC-----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM----- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~----- 371 (484)
..|++||+|+++|+++|+.|++.+ ..||+||+|+||+|+|+|....
T Consensus 161 ---------------------------~~Y~asKaal~~~~~~La~El~~~--~~~I~V~~v~PG~v~T~~~~~~~~~~~ 211 (269)
T d1xu9a_ 161 ---------------------------AAYSASKFALDGFFSSIRKEYSVS--RVNVSITLCVLGLIDTETAMKAVSGIV 211 (269)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHH--TCCCEEEEEEECCBCCHHHHHHSCGGG
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHhhhc--CCCEEEEEEecCcCCCcHHHHhccCCc
Confidence 799999999999999999999864 2369999999999999986432
Q ss_pred --CCCCHHhHHHHHHHHH
Q psy8786 372 --GNVNIFDDSSTFNAFE 387 (484)
Q Consensus 372 --~~~~peevA~~~~~L~ 387 (484)
...+||++|+.++...
T Consensus 212 ~~~~~~~e~~a~~i~~~~ 229 (269)
T d1xu9a_ 212 HMQAAPKEECALEIIKGG 229 (269)
T ss_dssp GGGCBCHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHh
Confidence 2267899998876543
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.4e-29 Score=246.04 Aligned_cols=172 Identities=19% Similarity=0.189 Sum_probs=132.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEE---EEecCchhHH---HHHHHHHhc-------------------------
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIY---LTARDKKKGA---EAVQVLKDR------------------------- 234 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vv---l~~R~~~~~~---~~~~~l~~~------------------------- 234 (484)
.|+||||||++|||+++|++|+++ |++|+ ++.|+.+..+ +..+++...
T Consensus 2 kkVvlITGassGIG~a~A~~la~~-Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 80 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASD-PSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTC-TTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHC-CCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc
Confidence 489999999999999999999999 77644 4566654433 333333211
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc--CCEEEEEeCCCcc-ccccchHHHHHHH
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR--HARVVNLSSSAGH-LSQITNLELKKRL 294 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~--~grIV~iSS~ag~-~~~~~~~~~~~~~ 294 (484)
.....+.++|+.++++|+.|+++++++++|+|++ +|+||++||.++. +.+..
T Consensus 81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~-------- 152 (285)
T d1jtva_ 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFN-------- 152 (285)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTC--------
T ss_pred ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCc--------
Confidence 1122345899999999999999999999999965 5899999999984 43332
Q ss_pred hhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC--
Q psy8786 295 RQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG-- 372 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~-- 372 (484)
..|++||+|+.+|+++|+.|++++ |||||+|+||+|+|+|.+...
T Consensus 153 -----------------------------~~Y~asKaal~~l~~~la~El~~~----gIrVn~V~PG~v~T~~~~~~~~~ 199 (285)
T d1jtva_ 153 -----------------------------DVYCASKFALEGLCESLAVLLLPF----GVHLSLIECGPVHTAFMEKVLGS 199 (285)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHGGG----TEEEEEEEECCBCC-------CC
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHHHhhcc----CcEEEEEecCCCCChHHHHhccC
Confidence 789999999999999999999998 999999999999999976532
Q ss_pred ------------------------------CCCHHhHHHHHHHHHhhh---ccccccccc
Q psy8786 373 ------------------------------NVNIFDDSSTFNAFERVI---SHFLIGQQI 399 (484)
Q Consensus 373 ------------------------------~~~peevA~~~~~L~s~~---a~~itG~~i 399 (484)
..+|||+|+.+++++... .+|++|+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g~~~ 259 (285)
T d1jtva_ 200 PEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERF 259 (285)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESCSTT
T ss_pred HHHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhCCCCCeEEecHHHH
Confidence 157999999999988543 467888755
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.96 E-value=1.3e-28 Score=240.14 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=139.9
Q ss_pred CCCCEEEEEcCCc--hHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 184 PSERVAVVTGANK--GLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGass--GIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+||++|||||++ |||+++|++|+++ |++|++++|+++.. +.++++...
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~-Ga~V~i~~r~~~~~-~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNESLE-KRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTTTH-HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHH-HHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 6999999999764 9999999999999 99999999996433 333333322
Q ss_pred -----------C------CC----CccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHH
Q psy8786 235 -----------A------ST----VPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 235 -----------~------~~----~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
. .. ......+...+.++..+.+.+.+.+.+..+.++.|+++++.+.......
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~------- 153 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAH------- 153 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT-------
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccccc-------
Confidence 0 00 1122445555666666666666666666555566776666665332221
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN 373 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~ 373 (484)
...|++||+|+++++|++|.|++++ |||||+|+||+++|++......
T Consensus 154 -----------------------------~~~y~asK~al~~ltr~lA~e~~~~----GIrvN~I~PG~v~T~~~~~~~~ 200 (274)
T d2pd4a1 154 -----------------------------YNVMGLAKAALESAVRYLAVDLGKH----HIRVNALSAGPIRTLASSGIAD 200 (274)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCTTGGGSTT
T ss_pred -----------------------------chhhhHHHHHHHHHHHhhHHHhcCc----CceecccccCcccCccccccCc
Confidence 2789999999999999999999998 9999999999999998866532
Q ss_pred -----------------CCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 374 -----------------VNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 374 -----------------~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
.+|+|+|+.++||+|+.++|+||++| .+||+|.+
T Consensus 201 ~~~~~~~~~~~~p~~r~~~pedIA~~v~fL~S~~s~~itG~~i--~vDGG~~~ 251 (274)
T d2pd4a1 201 FRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVH--FVDAGYHV 251 (274)
T ss_dssp HHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred hHHHHHHHhhhhhccCCcCHHHHHHHHHHHhChhhCCCcCceE--EECCChhh
Confidence 79999999999999999999999999 88999854
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.95 E-value=9.6e-28 Score=231.35 Aligned_cols=176 Identities=23% Similarity=0.309 Sum_probs=138.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHh--cCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCE--QFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~--~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
|+||||||++|||+++|++|++ +.|++|++++|++++++++.+..+..
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~ 82 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ 82 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence 8999999999999999999974 22889999999988766554322221
Q ss_pred ---------C-------CCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------------CCEEEEEeCCCcccccc
Q psy8786 235 ---------A-------STVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-------------HARVVNLSSSAGHLSQI 285 (484)
Q Consensus 235 ---------~-------~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-------------~grIV~iSS~ag~~~~~ 285 (484)
+ ......++|+.++++|+.|++.++++++|+|++ .|+||+++|..+.....
T Consensus 83 ~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~~~ 162 (248)
T d1snya_ 83 GLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGN 162 (248)
T ss_dssp CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCSTTC
T ss_pred CcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCCC
Confidence 0 112234789999999999999999999999964 48999999988732211
Q ss_pred chHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccC
Q psy8786 286 TNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVAT 365 (484)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T 365 (484)
. ..+..+|++||+|+++|++++|.|++++ ||+||+|+||+|+|
T Consensus 163 ~---------------------------------~~~~~~Y~aSKaal~~lt~~la~e~~~~----gI~vn~v~PG~v~T 205 (248)
T d1snya_ 163 T---------------------------------DGGMYAYRTSKSALNAATKSLSVDLYPQ----RIMCVSLHPGWVKT 205 (248)
T ss_dssp C---------------------------------SCCCHHHHHHHHHHHHHHHHHHHHHGGG----TCEEEEECCCSBCS
T ss_pred C---------------------------------CCChHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEEcCCCcccC
Confidence 1 0012789999999999999999999988 99999999999999
Q ss_pred CCccCCCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 366 NMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 366 ~m~~~~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
+|.....+.++++.++.++.++.......+|+.+
T Consensus 206 ~m~~~~~~~~~~~~~~~i~~~i~~l~~~~tG~~i 239 (248)
T d1snya_ 206 DMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFV 239 (248)
T ss_dssp TTTCTTCSBCHHHHHHHHHHHHHHCCGGGTTCEE
T ss_pred CcccccCCCCchHHHHHHHHHHHhcCccCCCcEE
Confidence 9998877777777777766666555556688877
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.95 E-value=8.1e-28 Score=232.14 Aligned_cols=182 Identities=26% Similarity=0.369 Sum_probs=129.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHHHHHhc---------------------------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQVLKDR--------------------------- 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~~l~~~--------------------------- 234 (484)
|+.|+||||||++|||+++|++|+++ |+ +|++++|++++++++.+.....
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~-G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKD-KNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHC-CCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 35699999999999999999999999 65 6888999887665533221111
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcC-------------CEEEEEeCCCccccc
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRH-------------ARVVNLSSSAGHLSQ 284 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~-------------grIV~iSS~ag~~~~ 284 (484)
.......++|++++++|+.|++.++++++|+|++. ++++++++..+....
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~ 159 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence 11233458999999999999999999999999642 678888876653211
Q ss_pred cchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCccc
Q psy8786 285 ITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVA 364 (484)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~ 364 (484)
.. ......+..+|++||+|+.+|+++|+.||+++ ||+||+|+||+|+
T Consensus 160 ~~-----------------------------~~~~~~~~~aY~aSKaal~~l~~~la~el~~~----gI~v~~i~PG~v~ 206 (250)
T d1yo6a1 160 NT-----------------------------SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDD----NVLVVNFCPGWVQ 206 (250)
T ss_dssp CC-----------------------------STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGG----TCEEEEEECCCC-
T ss_pred Cc-----------------------------ccccchhHHHHHHHHHHHHHHHHHHHHHhccc----CeEEEEEecCCCC
Confidence 11 00112234689999999999999999999988 9999999999999
Q ss_pred CCCccCCCCCCHHhHHHHHHHHHhhhccccccccc
Q psy8786 365 TNMSSFMGNVNIFDDSSTFNAFERVISHFLIGQQI 399 (484)
Q Consensus 365 T~m~~~~~~~~peevA~~~~~L~s~~a~~itG~~i 399 (484)
|+|.......+|||.++.++..+.......+|+.+
T Consensus 207 T~m~~~~~~~~~e~~a~~~~~~~~~~~~~~sG~f~ 241 (250)
T d1yo6a1 207 TNLGGKNAALTVEQSTAELISSFNKLDNSHNGRFF 241 (250)
T ss_dssp ------------HHHHHHHHHHHTTCCGGGTTCEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 99998877889999999988877655555677754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.95 E-value=3.9e-28 Score=235.69 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=143.7
Q ss_pred CCCCEEEEEc--CCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH-HHHHhc--------------------------
Q psy8786 184 PSERVAVVTG--ANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV-QVLKDR-------------------------- 234 (484)
Q Consensus 184 L~gKvaLITG--assGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~-~~l~~~-------------------------- 234 (484)
|+||++|||| |++|||+++|++|+++ |++|++++|+.++..+.. +++...
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~-Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~ 82 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG 82 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHT-TCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHc-CCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence 6999999999 4679999999999999 899999999877653322 221111
Q ss_pred ------------CC-----------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHH
Q psy8786 235 ------------AS-----------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELK 291 (484)
Q Consensus 235 ------------~~-----------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~ 291 (484)
.. .....+.+...+.+|..+.+...+...+.+.+++.|+++++......+..
T Consensus 83 ~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~~----- 157 (268)
T d2h7ma1 83 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAY----- 157 (268)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTTT-----
T ss_pred cCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCccc-----
Confidence 00 11224788899999999999999998887765555555544433433332
Q ss_pred HHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCC
Q psy8786 292 KRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFM 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~ 371 (484)
..|+++|+|+.+|+|++|+|++++ |||||+|+||+|+|++....
T Consensus 158 --------------------------------~~y~~sK~a~~~ltr~lA~e~~~~----gIrVN~V~PG~v~T~~~~~~ 201 (268)
T d2h7ma1 158 --------------------------------NWMTVAKSALESVNRFVAREAGKY----GVRSNLVAAGPIRTLAMSAI 201 (268)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECCCCCHHHHHH
T ss_pred --------------------------------chhhccccchhhccccchhhhhcc----CCcceEEecCCCCChhhhhh
Confidence 789999999999999999999998 99999999999999865311
Q ss_pred ----------------------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 372 ----------------------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 372 ----------------------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
+..+|+|+|+.+.||+|+.++|+||++| .+||++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i--~vDGG~~~ 265 (268)
T d2h7ma1 202 VGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDII--YADGGAHT 265 (268)
T ss_dssp HTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEE--EESTTGGG
T ss_pred ccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCEE--EECcCccc
Confidence 1368999999999999999999999999 88998854
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=1.6e-27 Score=230.76 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=140.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-HHHHHHHHHhc-------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-GAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-~~~~~~~l~~~------------------------------- 234 (484)
.|+|||||++|||+++|++|+++ |++|++++|+.++ .+++.+++...
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~-G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 37999999999999999999999 8999999998654 44444444322
Q ss_pred ------------CC-----------------CCccHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------CCEEEEEeCC
Q psy8786 235 ------------AS-----------------TVPFAIQAEKTILTNYLGLVRTCVFLFPLLRR-------HARVVNLSSS 278 (484)
Q Consensus 235 ------------~~-----------------~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~-------~grIV~iSS~ 278 (484)
+. ....+..+...+.+|..+.+...+.....+.. .+.++++++.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 00 01123566778888999999988888776632 2567777776
Q ss_pred Cc-cccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEE
Q psy8786 279 AG-HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINA 357 (484)
Q Consensus 279 ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNa 357 (484)
.+ ...+. ...|++||+|+++|+|++|+|++++ |||||+
T Consensus 161 ~~~~~~~~-------------------------------------~~~Y~asKaal~~lt~~lA~e~~~~----gIrVN~ 199 (266)
T d1mxha_ 161 MTDLPLPG-------------------------------------FCVYTMAKHALGGLTRAAALELAPR----HIRVNA 199 (266)
T ss_dssp GGGSCCTT-------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGG----TEEEEE
T ss_pred cccccCcc-------------------------------------hhhhhhhHHHHhhhHHHHHHHhCcc----CcEEEE
Confidence 66 33222 2799999999999999999999998 999999
Q ss_pred EeCCcccCCCccCC--------------CCCCHHhHHHHHHHHHhhhccccccccccccccceeec
Q psy8786 358 VHPGYVATNMSSFM--------------GNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 358 V~PG~V~T~m~~~~--------------~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
|+||+|+|++.... ..++|||+|++++||+|+.++|+||++| .+||||..
T Consensus 200 I~PG~i~t~~~~~~~~~~~~~~~~pl~r~~~~peeva~~v~fL~s~~s~~itG~~i--~vDGG~~l 263 (266)
T d1mxha_ 200 VAPGLSLLPPAMPQETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTL--KVDGGLIL 263 (266)
T ss_dssp EEESSBSCCSSSCHHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTTGGG
T ss_pred eccCcEeccccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhCCccCCeE--EECccHhh
Confidence 99999999865431 1159999999999999999999999999 88999865
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.95 E-value=2.8e-27 Score=231.32 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=137.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-chhHHHHHHHHHhc-------------------------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-KKKGAEAVQVLKDR------------------------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-~~~~~~~~~~l~~~------------------------------- 234 (484)
.|||||||++|||+++|++|+++ |++|++++++ ++.+++..+++...
T Consensus 3 pVAlITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence 47999999999999999999999 8999988765 44454444444210
Q ss_pred -------------------------C------CCCccH--------------HHHHHHHHhhhHHHHHHHHHHHHhhh--
Q psy8786 235 -------------------------A------STVPFA--------------IQAEKTILTNYLGLVRTCVFLFPLLR-- 267 (484)
Q Consensus 235 -------------------------~------~~~~~~--------------~~~~~~~~vN~~g~~~l~~allp~l~-- 267 (484)
+ ...... ..+...+.+|+.+++++++++.+.+.
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 0 001111 23445789999999999999887642
Q ss_pred ----c--CCEEEEEeCCCc-cccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHH
Q psy8786 268 ----R--HARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIY 340 (484)
Q Consensus 268 ----~--~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~L 340 (484)
+ .++||+++|... .+.+. ..+|++||+|+++|+|++
T Consensus 162 ~~~~~~~~~~ii~~~s~~~~~~~~~-------------------------------------~~~Y~asKaal~~lt~~l 204 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDAMTNQPLLG-------------------------------------YTIYTMAKGALEGLTRSA 204 (284)
T ss_dssp CGGGSCSCEEEEEECCTTTTSCCTT-------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcccccccccccCCccc-------------------------------------eeeeccccccchhhhHHH
Confidence 2 368888888776 33322 278999999999999999
Q ss_pred HHHhhhhcCCCCeEEEEEeCCcccCCCccC--------------CCCCCHHhHHHHHHHHHhhhccccccccccccccce
Q psy8786 341 QKKFDCELGNQDKVINAVHPGYVATNMSSF--------------MGNVNIFDDSSTFNAFERVISHFLIGQQINTFIPAI 406 (484)
Q Consensus 341 A~ela~~~~~~gIrVNaV~PG~V~T~m~~~--------------~~~~~peevA~~~~~L~s~~a~~itG~~i~~~~~g~ 406 (484)
|+||+++ |||||+|+||++.|..... .+.++|+|+|+++.||+|+.++|+||++| .+|||
T Consensus 205 A~el~~~----gIrvN~I~PG~t~~~~~~~~~~~~~~~~~~pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i--~VDGG 278 (284)
T d1e7wa_ 205 ALELAPL----QIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV--KVDGG 278 (284)
T ss_dssp HHHHGGG----TEEEEEEEESSBCCGGGSCHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE--EESTT
T ss_pred HHHhCCc----cccccccccccccccccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCeE--EECcC
Confidence 9999998 9999999999865542211 11268999999999999999999999999 89999
Q ss_pred eec
Q psy8786 407 YTV 409 (484)
Q Consensus 407 ~~~ 409 (484)
|++
T Consensus 279 ~sl 281 (284)
T d1e7wa_ 279 YSL 281 (284)
T ss_dssp GGG
T ss_pred hhc
Confidence 865
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.95 E-value=2e-28 Score=236.07 Aligned_cols=207 Identities=19% Similarity=0.152 Sum_probs=136.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH----------HHHHHHHHhc-----------CCCCccHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG----------AEAVQVLKDR-----------ASTVPFAIQAE 245 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~----------~~~~~~l~~~-----------~~~~~~~~~~~ 245 (484)
||||||||++|||+++|++|+++ |++|++++|++++. +....+.... .......+.++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~ 80 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLG 80 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHhcCHHHHHHHHHHHHHHhCCCCcEEEEcCCCCCcHHHHH
Confidence 89999999999999999999999 99999999875321 1111122111 11122345678
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhcC--CEEEEEeCCCc-cccccchHHHHHHHhhccccccccccccccCCCcccccCCCC
Q psy8786 246 KTILTNYLGLVRTCVFLFPLLRRH--ARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWP 322 (484)
Q Consensus 246 ~~~~vN~~g~~~l~~allp~l~~~--grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
....+|+.+...+.+...+.+.+. ..+.++++... .............. ... ...+.+..... ....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~-----~~~i~s~~~~~--~~~~~ 151 (257)
T d1fjha_ 81 NVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALE--AGE-----EAKARAIVEHA--GEQGG 151 (257)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHH--HTC-----HHHHHHHHHTC--CTTHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhcc--CCc-----EEEEeeehhcc--CCCcc
Confidence 888999999999999999988654 56777766544 21111100000000 000 00000000000 00001
Q ss_pred ChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCC------------------CCCHHhHHHHHH
Q psy8786 323 DSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMG------------------NVNIFDDSSTFN 384 (484)
Q Consensus 323 ~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~------------------~~~peevA~~~~ 384 (484)
..+|++||+|+++|+|+||.||+++ |||||+|+||+|+|++.+... .++|+|+|+.+.
T Consensus 152 ~~~Y~asKaal~~ltr~lA~el~~~----gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~PlgR~g~p~eva~~v~ 227 (257)
T d1fjha_ 152 NLAYAGSKNALTVAVRKRAAAWGEA----GVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIA 227 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHT----TCEEEEEEECC---------------------CCCSTTSCCCTHHHHHHHH
T ss_pred hHHHHHHhhhhhccccccccccccc----cccccccccCCcCChhHHhhcCCHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Confidence 2579999999999999999999998 999999999999999865421 168999999999
Q ss_pred HHHhhhccccccccccccccceeec
Q psy8786 385 AFERVISHFLIGQQINTFIPAIYTV 409 (484)
Q Consensus 385 ~L~s~~a~~itG~~i~~~~~g~~~~ 409 (484)
||+|+.++|+||++| .+||||+.
T Consensus 228 fL~S~~s~~itG~~i--~vDGG~ta 250 (257)
T d1fjha_ 228 FLMSPAASYVHGAQI--VIDGGIDA 250 (257)
T ss_dssp HHTSGGGTTCCSCEE--EESTTHHH
T ss_pred HHhCchhCCccCceE--EeCCCccc
Confidence 999999999999999 88999864
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=3.3e-27 Score=225.79 Aligned_cols=174 Identities=14% Similarity=0.054 Sum_probs=136.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH-----------------HHHHHHHHhc---------------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG-----------------AEAVQVLKDR--------------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~-----------------~~~~~~l~~~--------------- 234 (484)
++||||||++|||+++|++|+++ |++|++++|++++. +...+.+...
T Consensus 3 gkVlITGas~GIG~aia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~ 81 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG 81 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCchhcccccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCcc
Confidence 44699999999999999999999 89999999975321 1111111111
Q ss_pred -----CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhcccccccccccc
Q psy8786 235 -----ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 235 -----~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
.......+.|+.++++|+.+++.++++++|+|+++|+||++||.++ .+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~~---------------------- 139 (235)
T d1ooea_ 82 WAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSM---------------------- 139 (235)
T ss_dssp CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTB----------------------
T ss_pred cccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcccc----------------------
Confidence 1112234789999999999999999999999999999999999987 333332
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCCccCCCC-------CCHHhHHH
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNMSSFMGN-------VNIFDDSS 381 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m~~~~~~-------~~peevA~ 381 (484)
.+|++||+|+++|+++||.|++.. +.||+||+|+||+++|++.+...+ .+|+++++
T Consensus 140 ---------------~~Y~asKaal~~l~~~la~e~~~~--~~~i~v~~i~Pg~~~T~~~~~~~~~~~~~~~~~~~~va~ 202 (235)
T d1ooea_ 140 ---------------IGYGMAKAAVHHLTSSLAAKDSGL--PDNSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLSFISE 202 (235)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHSTTSSC--CTTCEEEEEEESCBCCHHHHHHSTTCCGGGCBCHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHhccC--CCceEEEEEecCcCcCcchhhhCcCCccccCCCHHHHHH
Confidence 799999999999999999998731 238999999999999998654322 57999999
Q ss_pred HHH-HHHhhhcccccccccc
Q psy8786 382 TFN-AFERVISHFLIGQQIN 400 (484)
Q Consensus 382 ~~~-~L~s~~a~~itG~~i~ 400 (484)
.++ |+.++.+.+++|+.+.
T Consensus 203 ~~~~~l~~~~~~~~tG~~i~ 222 (235)
T d1ooea_ 203 HLLKWTTETSSRPSSGALLK 222 (235)
T ss_dssp HHHHHHHCGGGCCCTTCEEE
T ss_pred HHHHHhcCccccCCCceEEE
Confidence 876 5667778899999874
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.79 E-value=5.4e-19 Score=170.16 Aligned_cols=156 Identities=17% Similarity=0.077 Sum_probs=114.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCc---hhHHHHHHHHHhc--------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDK---KKGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~---~~~~~~~~~l~~~-------------------------- 234 (484)
.++++|||||++|||+++|++|+++ |+ +|++++|+. +..++..++++..
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~ 86 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 86 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccc
Confidence 3579999999999999999999999 66 688999874 3455555555432
Q ss_pred -----------------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhh
Q psy8786 235 -----------------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQ 296 (484)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~ 296 (484)
.......++++.++++|+.|.+++.+++.+ .+.++||++||.++ .+.+.
T Consensus 87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~--~~~~~iv~~SS~a~~~g~~~----------- 153 (259)
T d2fr1a1 87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE--LDLTAFVLFSSFASAFGAPG----------- 153 (259)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT--SCCSEEEEEEEHHHHTCCTT-----------
T ss_pred cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhc--cCCceEeeecchhhccCCcc-----------
Confidence 112234588999999999999999887554 34589999999998 44333
Q ss_pred ccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC-CccCC----
Q psy8786 297 LREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN-MSSFM---- 371 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~-m~~~~---- 371 (484)
+..|+++|++++.|++.++ .+ ||+|++|+||.+.++ |....
T Consensus 154 --------------------------~~~YaAaka~l~~la~~~~----~~----Gi~v~~I~pg~~~~~g~~~~~~~~~ 199 (259)
T d2fr1a1 154 --------------------------LGGYAPGNAYLDGLAQQRR----SD----GLPATAVAWGTWAGSGMAEGPVADR 199 (259)
T ss_dssp --------------------------CTTTHHHHHHHHHHHHHHH----HT----TCCCEEEEECCBC------------
T ss_pred --------------------------cHHHHHHHHhHHHHHHHHH----hC----CCCEEECCCCcccCCccccchHHHH
Confidence 2789999999998876544 45 999999999998644 32211
Q ss_pred ------CCCCHHhHHHHHHHHHh
Q psy8786 372 ------GNVNIFDDSSTFNAFER 388 (484)
Q Consensus 372 ------~~~~peevA~~~~~L~s 388 (484)
...+|+++++.+..+..
T Consensus 200 ~~~~G~~~~~~~~~~~~l~~~l~ 222 (259)
T d2fr1a1 200 FRRHGVIEMPPETACRALQNALD 222 (259)
T ss_dssp CTTTTEECBCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHh
Confidence 12689999988877663
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.30 E-value=1.9e-13 Score=125.26 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=48.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
..||+||++|||||++|||+++|+.|+++ |++|++++|+.+++++..+++...
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~ 70 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKR 70 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHHHHHHHHHhc
Confidence 46899999999999999999999999999 899999999999998888877654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.25 E-value=1.5e-10 Score=114.10 Aligned_cols=148 Identities=15% Similarity=0.063 Sum_probs=99.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHHHhc--------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVLKDR-------------------------- 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l~~~-------------------------- 234 (484)
+-|++|||||+|.||.+++++|.++ |..|++++|... ..+.........
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 5689999999999999999999999 899999886321 111111110000
Q ss_pred -----CCCC---ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccc
Q psy8786 235 -----ASTV---PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSL 306 (484)
Q Consensus 235 -----~~~~---~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (484)
.... ...++....+++|+.|+.++++++... +-.++|++||...++......
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~--~~~~~i~~SS~~vyg~~~~~~------------------ 153 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA--KVQSFTYAASSSTYGDHPGLP------------------ 153 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT--TCSEEEEEEEGGGGTTCCCSS------------------
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhc--CCceEEEcccceeeCCCCCCC------------------
Confidence 1111 123556778999999999999988653 235999999988654322100
Q ss_pred ccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 307 NITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
... .....|...|+.||.+.+.+++.+++.. ++++..+.|+.|-.+.
T Consensus 154 -~~E------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~i~~~ilR~~~v~G~~ 200 (341)
T d1sb8a_ 154 -KVE------DTIGKPLSPYAVTKYVNELYADVFSRCY-------GFSTIGLRYFNVFGRR 200 (341)
T ss_dssp -BCT------TCCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCCEEEEECCEECTT
T ss_pred -ccC------CCCCCCCCcchHHHHHHHHHHHHHHHHh-------CCCeEEEEeceeeccC
Confidence 000 0012244789999999999998887654 6888899998876553
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.5e-10 Score=110.35 Aligned_cols=150 Identities=15% Similarity=0.041 Sum_probs=97.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHHHhc--------------------CCCCc---
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVLKDR--------------------ASTVP--- 239 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l~~~--------------------~~~~~--- 239 (484)
|+||||||+|.||++++++|+++ |.+|++++|... ..........-+ +....
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~ 80 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPN 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchh
Confidence 78999999999999999999998 899999876321 111111000000 11111
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccC
Q psy8786 240 FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAK 319 (484)
Q Consensus 240 ~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (484)
...+.+..+++|+.|+.++++++... +.++|++||.+.++.+.... ...... .....
T Consensus 81 ~~~~~~~~~~~Nv~g~~~ll~~~~~~---~~k~I~~SS~~vy~~~~~~~-------------------~~e~~~-~~~~~ 137 (312)
T d2b69a1 81 YMYNPIKTLKTNTIGTLNMLGLAKRV---GARLLLASTSEVYGDPEVHP-------------------QSEDYW-GHVNP 137 (312)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGGBSCSSSS-------------------BCTTCC-CBCCS
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHc---CCcEEEEEChheecCCCCCC-------------------CCcccc-CCCCC
Confidence 11345677899999999999887643 35899999976654322100 000000 00001
Q ss_pred CCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 320 GWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 320 ~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
..|...|+.||.+.+.+++.+++++ |+.+..++|+.|--|.
T Consensus 138 ~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~lR~~~vyGp~ 178 (312)
T d2b69a1 138 IGPRACYDEGKRVAETMCYAYMKQE-------GVEVRVARIFNTFGPR 178 (312)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECCEECTT
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHh-------CCcEEEEEeeeEECCC
Confidence 1244789999999999998888764 7999999999997654
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=9.7e-11 Score=116.64 Aligned_cols=148 Identities=18% Similarity=0.102 Sum_probs=98.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-----hH------------------------HHHHHHHHh---c
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-----KG------------------------AEAVQVLKD---R 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-----~~------------------------~~~~~~l~~---~ 234 (484)
|+||||||+|.||..++++|+++ |..|++++|... ++ +...+.+.+ +
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 89999999999999999999999 899999998421 11 111111111 1
Q ss_pred --------CCCCccHHHHHHHHHhhhHHHHHHHHHHHHh-hhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccc
Q psy8786 235 --------ASTVPFAIQAEKTILTNYLGLVRTCVFLFPL-LRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRS 305 (484)
Q Consensus 235 --------~~~~~~~~~~~~~~~vN~~g~~~l~~allp~-l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (484)
.......++.+..+++|+.|+.++++++... .++..++|++||...++.+...
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~------------------ 142 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI------------------ 142 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS------------------
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCC------------------
Confidence 0111122455678899999999999988654 2334689999997655332210
Q ss_pred cccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 306 LNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.+. .. ....|...|+.||.+.+.+++.+++.+ |+.+..+.|+.|..|.
T Consensus 143 -~~~----E~--~~~~P~~~Y~~sK~~~E~~~~~~~~~~-------~l~~~ilR~~~vyGp~ 190 (357)
T d1db3a_ 143 -PQK----ET--TPFYPRSPYAVAKLYAYWITVNYRESY-------GMYACNGILFNHESPR 190 (357)
T ss_dssp -SBC----TT--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECCEECTT
T ss_pred -CcC----CC--CCCCCCChHHHHHHHHHHHHHHHHHHh-------CCCEEEEEeccccCCC
Confidence 000 00 011234789999999999998887754 7888899998776663
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.18 E-value=2.3e-10 Score=112.97 Aligned_cols=157 Identities=22% Similarity=0.150 Sum_probs=101.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc------------------------------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR------------------------------ 234 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~------------------------------ 234 (484)
+||+||||||+|.||.+++++|+++ |+.|++++|+.++.+.........
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~ 88 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence 6899999999999999999999999 899999999977655443321110
Q ss_pred --CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcccccc--ch-----------HHHHHHHhhccc
Q psy8786 235 --ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQI--TN-----------LELKKRLRQLRE 299 (484)
Q Consensus 235 --~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~--~~-----------~~~~~~~~~~~~ 299 (484)
.............+.+|+.|+.++++.+... +.-.++|++||........ .. ..........
T Consensus 89 ~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-- 165 (342)
T d1y1pa1 89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAAT-PSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP-- 165 (342)
T ss_dssp ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTC-TTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC--
T ss_pred hhcccccccccccccccchhhhHHHHHHhhhcc-cccccccccccceeeccCCCCCCCcccccccccccccccccccc--
Confidence 0111112334566788999999988887653 2236899999975421111 00 0000000000
Q ss_pred cccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 300 PVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
. .....+...|+.||.+.+.++..++++... ++++.+|+|+.+--+
T Consensus 166 --------------e--~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~-----~~~~~~i~p~~v~Gp 211 (342)
T d1y1pa1 166 --------------E--SDPQKSLWVYAASKTEAELAAWKFMDENKP-----HFTLNAVLPNYTIGT 211 (342)
T ss_dssp --------------T--TSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----SSEEEEEEESEEECC
T ss_pred --------------c--cCCCCCcCcccchhHhHHHHHHHhhhhccc-----ccccceecccceeCC
Confidence 0 000002267999999999999888776542 588899999887554
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.3e-09 Score=103.86 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=96.8
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hHHHHHHHHHhc-------CC-C-Cc---cHHHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KGAEAVQVLKDR-------AS-T-VP---FAIQAEKTIL 249 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~~~~~~~l~~~-------~~-~-~~---~~~~~~~~~~ 249 (484)
.|.||||||+|.||.+++++|+++ |..|+++++..+ ..+...+.+... .. . .. ........++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~ 80 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIY 80 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-cCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcchhccccccchhhHHHHHH
Confidence 367999999999999999999998 777776654322 122222222222 11 1 11 1233455678
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHh
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVS 329 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aS 329 (484)
+|+.|+.++++++... .-.++|++||.+.++...... ..+. . ... ....++...|+.|
T Consensus 81 ~Nv~gt~~ll~~a~~~--~v~~~i~~SS~~vyg~~~~~~-~~E~----------------~-~~~--~~~~~~~~~Y~~s 138 (315)
T d1e6ua_ 81 QNMMIESNIIHAAHQN--DVNKLLFLGSSCIYPKLAKQP-MAES----------------E-LLQ--GTLEPTNEPYAIA 138 (315)
T ss_dssp HHHHHHHHHHHHHHHT--TCCEEEEECCGGGSCTTCCSS-BCGG----------------G-TTS--SCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEECCceEcCCCCCCC-ccCC----------------c-ccc--CCCCCCCCHHHHH
Confidence 9999999998887653 225899999988754322100 0000 0 000 0011223679999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 330 KIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 330 KaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
|.+.+.+++.+.++. |+++..+.|+.|--|.
T Consensus 139 K~~~E~~~~~~~~~~-------gl~~~ilR~~~vyGp~ 169 (315)
T d1e6ua_ 139 KIAGIKLCESYNRQY-------GRDYRSVMPTNLYGPH 169 (315)
T ss_dssp HHHHHHHHHHHHHHH-------CCEEEEEEECEEESTT
T ss_pred HHHHHHHHHHHHHHh-------CCCEEEEeeccEECCC
Confidence 999999998887654 7999999999887654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.11 E-value=5.3e-09 Score=103.45 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch------------------hHHHHHHHHHhc------CCCCcc
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK------------------KGAEAVQVLKDR------ASTVPF 240 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~------------------~~~~~~~~l~~~------~~~~~~ 240 (484)
++..||||||+|.||.+++++|.++ |..|+++++... ..+...+.+.+. ......
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~ 92 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGG 92 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccccccc
Confidence 3455999999999999999999998 899998876321 123333333221 111111
Q ss_pred ----HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccc
Q psy8786 241 ----AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAH 316 (484)
Q Consensus 241 ----~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (484)
....+..+.+|+.++..++.++... .-.++|++||...+....... ..+ . ... ...
T Consensus 93 ~~~~~~~~~~~~~~n~~gt~~ll~~~~~~--~vk~~i~~SS~~~~~~~~~~~--------~~~-~---~~~------~~e 152 (363)
T d2c5aa1 93 MGFIQSNHSVIMYNNTMISFNMIEAARIN--GIKRFFYASSACIYPEFKQLE--------TTN-V---SLK------ESD 152 (363)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCSEEEEEEEGGGSCGGGSSS--------SSS-C---EEC------GGG
T ss_pred ccccccccccccccccchhhHHHHhHHhh--Ccccccccccccccccccccc--------ccc-c---ccc------ccc
Confidence 2445677889999999988887653 125899999977654322100 000 0 000 000
Q ss_pred ccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 317 VAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 317 ~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.....|...|+.||.+.+.+++.+.+++ |+.+..+.|+.+..+-
T Consensus 153 ~~~~~p~~~Yg~sK~~~E~~~~~~~~~~-------gl~~~ilR~~~vyG~~ 196 (363)
T d2c5aa1 153 AWPAEPQDAFGLEKLATEELCKHYNKDF-------GIECRIGRFHNIYGPF 196 (363)
T ss_dssp GSSBCCSSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEECTT
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHh-------CCCEEEEEeeeEeccC
Confidence 0011234789999999999998877654 7999999998887653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.8e-09 Score=104.49 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=95.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh------------------------------HHHHHHHHHhc--
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK------------------------------GAEAVQVLKDR-- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~------------------------------~~~~~~~l~~~-- 234 (484)
|+||||||+|.||.+++++|.++ |+.|+.++|.... .+...+.+.+.
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEecCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 55699999999999999999998 8999999884320 01111111111
Q ss_pred ------CCCCcc---HHHHHHHHHhhhHHHHHHHHHHHHhhh-cCCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 ------ASTVPF---AIQAEKTILTNYLGLVRTCVFLFPLLR-RHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ------~~~~~~---~~~~~~~~~vN~~g~~~l~~allp~l~-~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
...... .+.....+++|+.|+.++++++...-. +..++|++||.+.++.+...
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~----------------- 143 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEI----------------- 143 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSS-----------------
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCC-----------------
Confidence 111111 234456679999999999988876432 23589999997655432210
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+. ... ...|...|+.||.+.+.+++.+++++ ++.+..+.|+.+..|
T Consensus 144 --~~~----E~~--~~~P~~~Yg~sK~~aE~~~~~~~~~~-------~~~~~ilr~~~vyGp 190 (347)
T d1t2aa_ 144 --PQK----ETT--PFYPRSPYGAAKLYAYWIVVNFREAY-------NLFAVNGILFNHESP 190 (347)
T ss_dssp --SBC----TTS--CCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEECT
T ss_pred --CCC----CCC--CCCCCCHHHHHHHHHHHHHHHHHHHh-------CCCEEEEEecceeCC
Confidence 000 000 01134789999999999998877654 688888888666544
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2.5e-08 Score=97.71 Aligned_cols=146 Identities=18% Similarity=0.046 Sum_probs=95.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hH----------------------HHHHHHHHhc--------C
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KG----------------------AEAVQVLKDR--------A 235 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~----------------------~~~~~~l~~~--------~ 235 (484)
||||||+|.||..+++.|+++ |..|++++|... .. +...+.++.. +
T Consensus 3 iLItG~tGfIG~~l~~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA 81 (338)
T d1udca_ 3 VLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA 81 (338)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence 999999999999999999999 899998876211 11 1111112211 1
Q ss_pred CCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCC
Q psy8786 236 STVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEH 312 (484)
Q Consensus 236 ~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (484)
.... ..++.+..+++|+.|+.++++++... .-.++|++||.+.+.......
T Consensus 82 a~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~--~v~~~i~~Ss~~vy~~~~~~~------------------------ 135 (338)
T d1udca_ 82 GLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA--NVKNFIFSSSATVYGDQPKIP------------------------ 135 (338)
T ss_dssp SCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCSCCSSS------------------------
T ss_pred CccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh--CCCEEEecCcceEEccccccc------------------------
Confidence 1111 12345688999999999999988764 235899998876543221100
Q ss_pred CcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 313 PRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 313 ~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
........+|...|+.+|.+.+.+.+..+.+. . ++.+..++|+.|-.+-
T Consensus 136 ~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~----~~~~~ilR~~~v~G~~ 184 (338)
T d1udca_ 136 YVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ--P----DWSIALLRYFNPVGAH 184 (338)
T ss_dssp BCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS--T----TCEEEEEEECEEECCC
T ss_pred cccccccCCCcchHHHHHhhhhHHHHHHHhhc--c----CCeEEEEeeccEEecc
Confidence 00000112345899999999999998766553 2 6888889999887654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=98.92 E-value=5.2e-08 Score=95.66 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=92.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC-------ch------------------hHHHHHHHHHhc------C
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD-------KK------------------KGAEAVQVLKDR------A 235 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~-------~~------------------~~~~~~~~l~~~------~ 235 (484)
|.||||||+|.||.+++++|.++ |..|.+++++ .. +.+...+.+... .
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~-g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a 81 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNN-HPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA 81 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHH-CTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-CCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhhh
Confidence 67999999999999999999998 7754443321 00 111121111111 1
Q ss_pred CCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCC
Q psy8786 236 STVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEH 312 (484)
Q Consensus 236 ~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (484)
.... ...+.+..+++|+.|+.++++++... +.++|++||...++....... . .........
T Consensus 82 ~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~---~~k~i~~ss~~vyg~~~~~~~-----------~--~~~~~~~~~ 145 (346)
T d1oc2a_ 82 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY---DIRFHHVSTDEVYGDLPLRED-----------L--PGHGEGPGE 145 (346)
T ss_dssp SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH---TCEEEEEEEGGGGCCBCCGGG-----------S--TTTTCSTTS
T ss_pred hcccccchhhCcccceeeehHhHHhhhhhhccc---cccccccccceEecccCcccc-----------c--cccccCccc
Confidence 1111 11334578899999999998877553 457888887765432111000 0 000000000
Q ss_pred CcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 313 PRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 313 ~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.........|...|+.+|.+.+.+++.++++. |+++.++.|+.|.-|
T Consensus 146 ~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~-------~i~~~ilR~~~vyGp 192 (346)
T d1oc2a_ 146 KFTAETNYNPSSPYSSTKAASDLIVKAWVRSF-------GVKATISNCSNNYGP 192 (346)
T ss_dssp SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEEST
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc-------CCCEEEEeecceeCC
Confidence 00001112244789999999999998777654 799999999988765
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.91 E-value=1.1e-08 Score=99.14 Aligned_cols=146 Identities=18% Similarity=0.076 Sum_probs=93.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh-----HHH-------------------HHHHHHhc--------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK-----GAE-------------------AVQVLKDR-------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~-----~~~-------------------~~~~l~~~-------- 234 (484)
|+||||||+|.||++++++|+++ |++|+.++|.... +++ ..+.+...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 79 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence 78999999999999999999999 8999999885321 111 11111111
Q ss_pred CCCCccH---HHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccC
Q psy8786 235 ASTVPFA---IQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKE 311 (484)
Q Consensus 235 ~~~~~~~---~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
....... +.....+++|+.|+.++++++... ....++++.||...++..... ...
T Consensus 80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~-~~~~~~i~~Ss~~~~~~~~~~-------------------~~~-- 137 (321)
T d1rpna_ 80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLIQAE-------------------RQD-- 137 (321)
T ss_dssp CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSCSSS-------------------SBC--
T ss_pred cccccccccccchHHHHhhhhhchHHHHHHHHHh-CCCcccccccchhhcCcccCC-------------------CCC--
Confidence 1111111 335677899999999998877653 223467766665433222110 000
Q ss_pred CCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 312 HPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 312 ~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
. .....+...|+.||.+.+.+++.++.+. ++.+..+.|+.+.-|
T Consensus 138 --E--~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~lr~~~vyGp 181 (321)
T d1rpna_ 138 --E--NTPFYPRSPYGVAKLYGHWITVNYRESF-------GLHASSGILFNHESP 181 (321)
T ss_dssp --T--TSCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECCEECT
T ss_pred --C--CCCccccChhHHHHHHHHHHHHHHHhhc-------CCcEEEEEEecccCC
Confidence 0 0011244789999999999998887654 788888888766554
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.85 E-value=5.3e-08 Score=94.56 Aligned_cols=145 Identities=19% Similarity=0.081 Sum_probs=91.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCe------EEEEecC-----chhHH------------------HHHHHHHhc----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGY------IYLTARD-----KKKGA------------------EAVQVLKDR---- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~------Vvl~~R~-----~~~~~------------------~~~~~l~~~---- 234 (484)
.||||||+|.||+++++.|+++ |.. |+..++. ..... .........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~-g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAG-AYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-SCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 4899999999999999999998 653 3333321 11100 011111111
Q ss_pred --CCCCc----cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccc
Q psy8786 235 --ASTVP----FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNI 308 (484)
Q Consensus 235 --~~~~~----~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (484)
..... .....+..+++|+.|+.++++++... .-.++|++||...++...... +
T Consensus 81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~--~~~~~I~~Ss~~~yg~~~~~~-------------------~ 139 (322)
T d1r6da_ 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA--GVGRVVHVSTNQVYGSIDSGS-------------------W 139 (322)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEEEGGGGCCCSSSC-------------------B
T ss_pred EeecccccccccccchHHHhhhhHHHHHHHHHHHHHc--CCceEEEeecceeecCCCCCC-------------------C
Confidence 11111 12445677899999999999988653 236899999987654332100 0
Q ss_pred ccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 309 TKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.. . ....|...|+.||.+.+.+++.++++. |+.+..+.|+.|--|.
T Consensus 140 ~E----~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~~lR~~~vyGp~ 185 (322)
T d1r6da_ 140 TE----S--SPLEPNSPYAASKAGSDLVARAYHRTY-------GLDVRITRCCNNYGPY 185 (322)
T ss_dssp CT----T--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEECTT
T ss_pred CC----C--CCCCCCCHHHHHHHHHHHHHHHHHHHh-------CCCEEEEEeeeEECcC
Confidence 00 0 011234789999999999999888754 7999999999886553
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1.7e-08 Score=99.24 Aligned_cols=151 Identities=14% Similarity=0.016 Sum_probs=94.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch----hH---------------------HHHHHHHHhc-------
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK----KG---------------------AEAVQVLKDR------- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~----~~---------------------~~~~~~l~~~------- 234 (484)
|+||||||+|.||++++++|+++ |.+|+++++... .. ++....+...
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih 80 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-cCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 89999999999999999999999 899998865211 11 1111111111
Q ss_pred -CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccccccccc
Q psy8786 235 -ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITK 310 (484)
Q Consensus 235 -~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (484)
+.... ..+..+....+|+.|+.++++++... .-.++|++||...++...... .
T Consensus 81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~--~i~~~i~~SS~~vyg~~~~~~---------------------~ 137 (347)
T d1z45a2 81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY--NVSKFVFSSSATVYGDATRFP---------------------N 137 (347)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH--TCCEEEEEEEGGGGCCGGGST---------------------T
T ss_pred ccccccccccccCcccccccchhhhHHHHHHHHhc--ccceEEeecceeeecCcccCC---------------------C
Confidence 11111 12344577889999999999987653 235899999987654322100 0
Q ss_pred CCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 311 EHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...........|...|+.||.+.+.+++.+.+... .++.+..+.|+.+-.+
T Consensus 138 ~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-----~~~~~~~lR~~~v~g~ 188 (347)
T d1z45a2 138 MIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDK-----KSWKFAILRYFNPIGA 188 (347)
T ss_dssp CCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHST-----TSCEEEEEEECEEECC
T ss_pred CCccccccCCCCCChhHhHHHHHHHHHHHHHHhhc-----cCCcEEEEeecceEee
Confidence 00000000112347899999999999987765432 2688888888776543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.84 E-value=2e-08 Score=100.43 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=93.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec--------------------------------------------Cc
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR--------------------------------------------DK 221 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R--------------------------------------------~~ 221 (484)
||+||||||+|.||.+++++|+++ |+.|+++|. +.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~-g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 688999999999999999999998 899998861 01
Q ss_pred hhHHHHHHHHHhc-----CCCC------ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHH
Q psy8786 222 KKGAEAVQVLKDR-----ASTV------PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLEL 290 (484)
Q Consensus 222 ~~~~~~~~~l~~~-----~~~~------~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~ 290 (484)
+.++++.+..+-+ +... ...+.....+.+|+.|+.++++++... ....+++..||...+.......
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~~i~~ss~~~~~~~~~~~-- 156 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGTMGEYGTPNIDI-- 156 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECCGGGGCCCSSCB--
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHh-ccccceeecccccccccccccc--
Confidence 1112222221111 1111 112445567899999999999887653 2224566666655432221100
Q ss_pred HHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 291 KKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+... .. ..............|...|+.||.+.+.+++.++++. |+++.++.|+.|.-+
T Consensus 157 -------~~~~~--~~-~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~-------~l~~~~lR~~~v~G~ 215 (393)
T d1i24a_ 157 -------EEGYI--TI-THNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-------GIRATDLNQGVVYGV 215 (393)
T ss_dssp -------CSSEE--EE-EETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECS
T ss_pred -------ccccc--cc-cccccccccccccccccHHHHHhhhhccccccccccc-------ceeeeecccccccCC
Confidence 00000 00 0000000000112234689999999999998777654 789999999877654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=4e-07 Score=88.95 Aligned_cols=147 Identities=13% Similarity=-0.052 Sum_probs=91.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC----------chhHHHH---------------------HHHHHhc-
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD----------KKKGAEA---------------------VQVLKDR- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~----------~~~~~~~---------------------~~~l~~~- 234 (484)
|+||||||+|.||.+++++|+++ |..|+++++. .+..+.. .+.+...
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~-g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 81 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence 67899999999999999999998 8899988641 1111111 1111111
Q ss_pred -------CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 -------ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 -------~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+.... ........+++|+.|+.++.+++... .-.+++++||...++......
T Consensus 82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~--~v~~~i~~ss~~~~~~~~~~~---------------- 143 (346)
T d1ek6a_ 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH--GVKNLVFSSSATVYGNPQYLP---------------- 143 (346)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGGCSCSSSS----------------
T ss_pred cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc--Ccccccccccceeeecccccc----------------
Confidence 11111 11334577899999999988876542 125788888876643322100
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.........+...|+.+|...+...+.+++.. . |+....+.|+.+..+
T Consensus 144 --------~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~--~----~~~~~~lR~~~v~G~ 191 (346)
T d1ek6a_ 144 --------LDEAHPTGGCTNPYGKSKFFIEEMIRDLCQAD--K----TWNAVLLRYFNPTGA 191 (346)
T ss_dssp --------BCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHC--T----TCEEEEEEECEEECC
T ss_pred --------ccccccccccCChHHHHHHHHHHHHHHHHHhc--c----CCceEEEeecceecc
Confidence 00000011233689999999998887766532 2 678888888776554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.77 E-value=5.6e-08 Score=94.50 Aligned_cols=147 Identities=14% Similarity=0.003 Sum_probs=94.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch------------------------------hHHHHHHHHHhc--
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK------------------------------KGAEAVQVLKDR-- 234 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~------------------------------~~~~~~~~l~~~-- 234 (484)
|+||||||+|.||+++++.|+++ |++|+.++|... ..+.....+...
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHC-cCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 89999999999999999999999 999999998421 111111112211
Q ss_pred ------CCCCcc---HHHHHHHHHhhhHHHHHHHHHHHHhhhc---CCEEEEEeCCCccccccchHHHHHHHhhcccccc
Q psy8786 235 ------ASTVPF---AIQAEKTILTNYLGLVRTCVFLFPLLRR---HARVVNLSSSAGHLSQITNLELKKRLRQLREPVS 302 (484)
Q Consensus 235 ------~~~~~~---~~~~~~~~~vN~~g~~~l~~allp~l~~---~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
+..... .+.....+.+|+.++..+..++...... ..+++..||..........
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~--------------- 145 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPP--------------- 145 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSS---------------
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCC---------------
Confidence 111111 1445678889999999988887654322 2355555554432111100
Q ss_pred ccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 303 LRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.. .. ....|...|+.||.+.+.+++.++++. |+.+..+.|+.|--|.
T Consensus 146 -----~~----E~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilR~~~vyGp~ 192 (339)
T d1n7ha_ 146 -----QS----ET--TPFHPRSPYAASKCAAHWYTVNYREAY-------GLFACNGILFNHESPR 192 (339)
T ss_dssp -----BC----TT--SCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECCEECTT
T ss_pred -----CC----CC--CCCCCcchhhHHHHHHHHHHHHHHHHh-------CCCEEEEEEccccCCC
Confidence 00 00 011244789999999999998877653 7999999998876553
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=4.1e-08 Score=95.93 Aligned_cols=151 Identities=12% Similarity=0.029 Sum_probs=91.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH-------------------HHHHHHHhc-------CCCCc--
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA-------------------EAVQVLKDR-------ASTVP-- 239 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~-------------------~~~~~l~~~-------~~~~~-- 239 (484)
+||||||+|.||++++++|+++|...|+++++...... +..+..... .....
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~~~ 81 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPI 81 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccccccc
Confidence 38999999999999999999983357888766432111 111111111 11111
Q ss_pred -cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 240 -FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 240 -~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
..+.....+.+|+.|+.++++++... +.+.+++||...+....... ............
T Consensus 82 ~~~~~~~~~~~~nv~gt~~ll~~~~~~---~~~~~~~ss~~~~~~~~~~~------------------~~~~~~~~~~~~ 140 (342)
T d2blla1 82 EYTRNPLRVFELDFEENLRIIRYCVKY---RKRIIFPSTSEVYGMCSDKY------------------FDEDHSNLIVGP 140 (342)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHT---TCEEEEECCGGGGBTCCCSS------------------BCTTTCCCBCCC
T ss_pred ccccCCccccccccccccccccccccc---cccccccccccccccccccc------------------cccccccccccc
Confidence 11334567899999999999987542 45677777766543322100 000000000001
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...|...|+.||.+.+.+++.++++. |+.+..+.|..+-.+
T Consensus 141 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~i~r~~~~~g~ 181 (342)
T d2blla1 141 VNKPRWIYSVSKQLLDRVIWAYGEKE-------GLQFTLFRPFNWMGP 181 (342)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECSEECS
T ss_pred cCCCcchhhhcccchhhhhhhhhccc-------CceeEEeeccccccc
Confidence 11234789999999999998887764 788888888877654
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=98.72 E-value=7.5e-08 Score=95.47 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=96.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeE-EEEecC---------------------------chhHHHHHHHHHhc-----
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYI-YLTARD---------------------------KKKGAEAVQVLKDR----- 234 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~V-vl~~R~---------------------------~~~~~~~~~~l~~~----- 234 (484)
.||||||+|.||.+++++|++. |..| +++++. .+..++..+...-+
T Consensus 2 kILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKN-TQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHH-CSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 4899999999999999999998 7764 444431 11122222221111
Q ss_pred CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhc-------CCEEEEEeCCCccccccchHHHHHHHhhcccccccc
Q psy8786 235 ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRR-------HARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLR 304 (484)
Q Consensus 235 ~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~-------~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~ 304 (484)
+.... ...+....+++|+.|+.++.+++...-.. ..++|++||...++....... .+ .
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~--------~~-~--- 148 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDE--------VE-N--- 148 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGG--------SC-T---
T ss_pred ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCc--------cc-c---
Confidence 11111 11334678999999999999988765322 258999999876543221100 00 0
Q ss_pred ccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 305 SLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
..... .........|...|+.||.+.+.+++.++..+ |+.+..+.|+.|--|.
T Consensus 149 --~~~~~-~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~-------~i~~~~lR~~~vyGp~ 201 (361)
T d1kewa_ 149 --SVTLP-LFTETTAYAPSSPYSASKASSDHLVRAWRRTY-------GLPTIVTNCSNNYGPY 201 (361)
T ss_dssp --TSCCC-CBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-------CCCEEEEEECEEESTT
T ss_pred --ccCCC-CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh-------CCCEEEEecCceECcC
Confidence 00000 00000111244789999999999998887654 7899999999887654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=9.1e-09 Score=95.86 Aligned_cols=135 Identities=17% Similarity=0.079 Sum_probs=90.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHH-H-------------HHHHHhc----------
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAE-A-------------VQVLKDR---------- 234 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~-~-------------~~~l~~~---------- 234 (484)
++.|++|+||||||+|.||++++++|.++ |. +|++.+|++..... . .+.+...
T Consensus 9 ~~~m~~k~IlItGaTG~iG~~l~~~Ll~~-g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~ 87 (232)
T d2bkaa1 9 DFRMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCC 87 (232)
T ss_dssp HHHHTCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred HhCCCCCEEEEECCCcHHHHHHHHHHHhC-CCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccc
Confidence 35568899999999999999999999998 54 79999986432111 0 0011111
Q ss_pred CCCCccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCc
Q psy8786 235 ASTVPFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPR 314 (484)
Q Consensus 235 ~~~~~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (484)
..............++|+.++..+++++... .-.++|.+|+......+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~v~~fi~~Ss~~~~~~~~----------------------------- 136 (232)
T d2bkaa1 88 LGTTRGKAGAEGFVRVDRDYVLKSAELAKAG--GCKHFNLLSSKGADKSSN----------------------------- 136 (232)
T ss_dssp CCCCHHHHHHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECCTTCCTTCS-----------------------------
T ss_pred ccccccccchhhhhhhcccccceeeeccccc--CccccccCCccccccCcc-----------------------------
Confidence 1111223455667789999999988877542 235799999877543222
Q ss_pred ccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCe-EEEEEeCCcccCCC
Q psy8786 315 AHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDK-VINAVHPGYVATNM 367 (484)
Q Consensus 315 ~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gI-rVNaV~PG~V~T~m 367 (484)
..|+.+|...+...+ ++ |. ++..+.||.+-.+.
T Consensus 137 ---------~~Y~~~K~~~E~~l~----~~-------~~~~~~IlRP~~i~G~~ 170 (232)
T d2bkaa1 137 ---------FLYLQVKGEVEAKVE----EL-------KFDRYSVFRPGVLLCDR 170 (232)
T ss_dssp ---------SHHHHHHHHHHHHHH----TT-------CCSEEEEEECCEEECTT
T ss_pred ---------chhHHHHHHhhhccc----cc-------cccceEEecCceeecCC
Confidence 579999998875542 12 33 46778999987653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=98.69 E-value=7.8e-08 Score=94.13 Aligned_cols=157 Identities=17% Similarity=0.053 Sum_probs=96.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH-----------------------HHHHHHhc------
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE-----------------------AVQVLKDR------ 234 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~-----------------------~~~~l~~~------ 234 (484)
++||+||||||+|.||.++++.|+++ |+.|++++|+...... ..+.+...
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 58899999999999999999999999 8999999986542111 11111111
Q ss_pred -CCCCc----cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccc
Q psy8786 235 -ASTVP----FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNIT 309 (484)
Q Consensus 235 -~~~~~----~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
..... ..+..+..+.+|+.|+..+++++... .....++..|+..........
T Consensus 85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~-~~~~~~~~~s~~~~~~~~~~~---------------------- 141 (356)
T d1rkxa_ 85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNITSDKCYDNKEWI---------------------- 141 (356)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEECCGGGBCCCCSS----------------------
T ss_pred hhhccccccccccCCccccccccccchhhhhhhhcc-ccccccccccccccccccccc----------------------
Confidence 11111 12445678899999999999887653 222344444443333221110
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhh--cCCCCeEEEEEeCCcccCC
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCE--LGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~--~~~~gIrVNaV~PG~V~T~ 366 (484)
..........|...|+.+|.+.+.+++.++.++... ....++.+..+.|+.+.-+
T Consensus 142 --~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp 198 (356)
T d1rkxa_ 142 --WGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGG 198 (356)
T ss_dssp --SCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECT
T ss_pred --cccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCC
Confidence 000000011234789999999999998888765321 0112688889999877544
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=98.67 E-value=2.2e-06 Score=82.32 Aligned_cols=143 Identities=13% Similarity=-0.031 Sum_probs=78.7
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCc---------------------------hhHHHHHHHHHhc-----C
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDK---------------------------KKGAEAVQVLKDR-----A 235 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~---------------------------~~~~~~~~~l~~~-----~ 235 (484)
.||||||+|.||++++++|+++ |++|+++++-. +.++++.+..+-+ .
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 4899999999999999999999 89998876311 1111111111101 1
Q ss_pred CCCcc---HHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCc-cccccchHHHHHHHhhcccccccccccc--c
Q psy8786 236 STVPF---AIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAG-HLSQITNLELKKRLRQLREPVSLRSLNI--T 309 (484)
Q Consensus 236 ~~~~~---~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 309 (484)
..... ..+.+..+++|+.|+.++++++... ...+.++.+|... ...+... .......... .
T Consensus 81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~--~~~~~i~~sS~~~~~~~~~~~-----------~~~~~~~~~~~~~ 147 (338)
T d1orra_ 81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY--NSNCNIIYSSTNKVYGDLEQY-----------KYNETETRYTCVD 147 (338)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEEGGGGTTCTTS-----------CEEECSSCEEETT
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhcc--ccccccccccccccccccccc-----------ccccccccccccc
Confidence 11111 1344678899999999999877653 2344555555443 2222110 0000000000 0
Q ss_pred cCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHh
Q psy8786 310 KEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKF 344 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~el 344 (484)
............+...|+.+|...+.+....+..+
T Consensus 148 ~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~ 182 (338)
T d1orra_ 148 KPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF 182 (338)
T ss_dssp CTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccCCccccccccccccchhhhhhhhhhhcc
Confidence 00000000111234889999999999988777765
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=5.6e-08 Score=88.54 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG 224 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~ 224 (484)
..|+|+||||+|+||++++++|+++ |+.|++..|+.+++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~~~ 40 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRL 40 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcChhhc
Confidence 4578999999999999999999999 89999999987653
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.55 E-value=6.9e-07 Score=88.62 Aligned_cols=154 Identities=15% Similarity=0.072 Sum_probs=92.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEec-----------------------------------------C---ch
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTAR-----------------------------------------D---KK 222 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R-----------------------------------------~---~~ 222 (484)
..||||||+|.||..++++|+++++++|+++|+ | .+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence 359999999999999999999866889998863 0 01
Q ss_pred hHHHHHHHHHh-c-----CCCCc---cHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHH
Q psy8786 223 KGAEAVQVLKD-R-----ASTVP---FAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKR 293 (484)
Q Consensus 223 ~~~~~~~~l~~-~-----~~~~~---~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~ 293 (484)
.++++.+.... + +.... ..+.....+++|+.++..+++++... ...+++++++...+.........
T Consensus 83 ~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~--- 157 (383)
T d1gy8a_ 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH--KCDKIIFSSSAAIFGNPTMGSVS--- 157 (383)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEEEGGGTBSCCC-------
T ss_pred Hhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc--CCccccccccccccccccccccc---
Confidence 11111111111 0 11111 11344567889999999998887653 22577777766553322210000
Q ss_pred HhhccccccccccccccCCCcccccCCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCCC
Q psy8786 294 LRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATNM 367 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~m 367 (484)
.............|...|+.||.+.+.+++.+...+ |+.+.++.|+.+.-+.
T Consensus 158 ---------------~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-------gl~~~~lR~~~vyG~~ 209 (383)
T d1gy8a_ 158 ---------------TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY-------GIKGICLRYFNACGAH 209 (383)
T ss_dssp ----------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH-------CCEEEEEEECEEECCC
T ss_pred ---------------ccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh-------CCCEEEEecceeeccC
Confidence 000000000011234789999999999998877654 7999999998876554
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.44 E-value=2.9e-09 Score=94.80 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=40.9
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
+.|+||+|+||+++|+.|+++ |++|++.+|+++++++..+++...
T Consensus 3 i~vigGaG~iG~alA~~la~~-G~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 3 VALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp EEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhc
Confidence 667788899999999999999 999999999999999998888755
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.43 E-value=7.3e-06 Score=76.64 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=81.7
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHh---c----CCCCcc----HHHHHHHHHhhhHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK---KGAEAVQVLKD---R----ASTVPF----AIQAEKTILTNYLG 254 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~---~~~~~~~~l~~---~----~~~~~~----~~~~~~~~~vN~~g 254 (484)
||||||+|.||.+++++|.++ |..|+.++|++- +.+...+.+.. . ...... ....+.....|...
T Consensus 4 IlItGasGfiG~~l~~~L~~~-g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~ 82 (281)
T d1vl0a_ 4 ILITGANGQLGREIQKQLKGK-NVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIG 82 (281)
T ss_dssp EEEESTTSHHHHHHHHHHTTS-SEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHH
T ss_pred EEEECCCCHHHHHHHHHHHhC-CCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeeccccccccccccchhhccccccc
Confidence 899999999999999999998 899999998642 22222222322 1 111111 13335566677777
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCChhhHHhHHHHH
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDSAYAVSKIGVN 334 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~aSKaAl~ 334 (484)
...+....... ...++..||...+..+... .........+...|+.+|...+
T Consensus 83 ~~~~~~~~~~~---~~~~~~~ss~~v~~~~~~~-------------------------~~~e~~~~~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 83 PKNLAAAAYSV---GAEIVQISTDYVFDGEAKE-------------------------PITEFDEVNPQSAYGKTKLEGE 134 (281)
T ss_dssp HHHHHHHHHHH---TCEEEEEEEGGGSCSCCSS-------------------------CBCTTSCCCCCSHHHHHHHHHH
T ss_pred ccccccccccc---cccccccccceeeeccccc-------------------------cccccccccchhhhhhhhhHHH
Confidence 76666554432 3566666665443222110 0000001123478999998877
Q ss_pred HHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 335 LLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 335 ~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
.+.+ + . +.+...+.|+.+--+
T Consensus 135 ~~~~----~---~----~~~~~i~R~~~vyG~ 155 (281)
T d1vl0a_ 135 NFVK----A---L----NPKYYIVRTAWLYGD 155 (281)
T ss_dssp HHHH----H---H----CSSEEEEEECSEESS
T ss_pred HHHH----H---h----CCCccccceeEEeCC
Confidence 6653 2 2 566777999988544
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.42 E-value=3.4e-07 Score=83.22 Aligned_cols=38 Identities=24% Similarity=0.143 Sum_probs=31.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCe--EEEEecCchhHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGY--IYLTARDKKKGA 225 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~--Vvl~~R~~~~~~ 225 (484)
++||||||+|+||++++++|+++ |+. |+...|++++.+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~-g~~v~v~~~~R~~~~~~ 43 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKE 43 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHT-TTTCEEEEEESCHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHC-CCcEEEEEEcCCHHHHH
Confidence 68999999999999999999998 654 556678766543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.40 E-value=1.8e-07 Score=85.23 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=92.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchh-----------HHHHHHHHHhc------CCCCc--cHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKK-----------GAEAVQVLKDR------ASTVP--FAIQA 244 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~-----------~~~~~~~l~~~------~~~~~--~~~~~ 244 (484)
.|++|||||||.||++++++|+++ +. +|++..|+... ..+..+.+... ..... .....
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~-~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 80 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSE 80 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-CCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeeeccccccc
Confidence 388999999999999999999998 65 56666765321 11111111110 00001 11223
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCcccccCCCCCh
Q psy8786 245 EKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVAKGWPDS 324 (484)
Q Consensus 245 ~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
+...++|+.++..+++++... .-.+++++||..+..... .
T Consensus 81 ~~~~~~~~~~~~~~~~~a~~~--~v~~~i~~Ss~~~~~~~~--------------------------------------~ 120 (212)
T d2a35a1 81 EAFRAVDFDLPLAVGKRALEM--GARHYLVVSALGADAKSS--------------------------------------I 120 (212)
T ss_dssp HHHHHHHTHHHHHHHHHHHHT--TCCEEEEECCTTCCTTCS--------------------------------------S
T ss_pred cccccchhhhhhhcccccccc--cccccccccccccccccc--------------------------------------c
Confidence 467788999998888876542 236899998876543222 5
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCe-EEEEEeCCcccCCCccCC------C-----------CCCHHhHHHHHHHH
Q psy8786 325 AYAVSKIGVNLLTRIYQKKFDCELGNQDK-VINAVHPGYVATNMSSFM------G-----------NVNIFDDSSTFNAF 386 (484)
Q Consensus 325 ~Y~aSKaAl~~lt~~LA~ela~~~~~~gI-rVNaV~PG~V~T~m~~~~------~-----------~~~peevA~~~~~L 386 (484)
.|..+|...+...+ .. +. ++..+.|+.|.-+..... . +...+|+|+++..+
T Consensus 121 ~y~~~K~~~E~~l~-------~~----~~~~~~I~Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DvA~ai~~~ 189 (212)
T d2a35a1 121 FYNRVKGELEQALQ-------EQ----GWPQLTIARPSLLFGPREEFRLAEILAAPIARILPGKYHGIEACDLARALWRL 189 (212)
T ss_dssp HHHHHHHHHHHHHT-------TS----CCSEEEEEECCSEESTTSCEEGGGGTTCCCC----CHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhcc-------cc----ccccceeeCCcceeCCcccccHHHHHHHHHhhccCCCCcEEEHHHHHHHHHHH
Confidence 79999988775542 11 33 567789998854432110 0 03456777777766
Q ss_pred Hh
Q psy8786 387 ER 388 (484)
Q Consensus 387 ~s 388 (484)
+.
T Consensus 190 ~~ 191 (212)
T d2a35a1 190 AL 191 (212)
T ss_dssp HT
T ss_pred Hc
Confidence 53
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=4.7e-06 Score=78.57 Aligned_cols=142 Identities=16% Similarity=0.064 Sum_probs=82.5
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCch--hH--------------HHHHHHHHhc------------CC-CC
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKK--KG--------------AEAVQVLKDR------------AS-TV 238 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~--~~--------------~~~~~~l~~~------------~~-~~ 238 (484)
||||||+|.||..++++|+++ |. .|+++++-.. +. ++....+... +. ..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~-g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~~ 80 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSS 80 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTT-TCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCC
T ss_pred EEEecCccHHHHHHHHHHHhC-CCCeEEEEECCCCcchhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhccccc
Confidence 899999999999999999998 65 5777652211 11 1111111111 10 11
Q ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHhhhcCCEEEEEeCCCccccccchHHHHHHHhhccccccccccccccCCCccccc
Q psy8786 239 PFAIQAEKTILTNYLGLVRTCVFLFPLLRRHARVVNLSSSAGHLSQITNLELKKRLRQLREPVSLRSLNITKEHPRAHVA 318 (484)
Q Consensus 239 ~~~~~~~~~~~vN~~g~~~l~~allp~l~~~grIV~iSS~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (484)
......+.....|+.+...+.+++... +-++++.||......+.... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~i~~v~~ss~~~~~~~~~~~-------------------------~~~~~ 132 (307)
T d1eq2a_ 81 TTEWDGKYMMDNNYQYSKELLHYCLER---EIPFLYASSAATYGGRTSDF-------------------------IESRE 132 (307)
T ss_dssp TTCCCHHHHHHHTHHHHHHHHHHHHHH---TCCEEEEEEGGGGTTCCSCB-------------------------CSSGG
T ss_pred ccccccccccccccccccccccccccc---cccccccccccccccccccc-------------------------ccccc
Confidence 112234456677788888877765543 33466666555432221100 00000
Q ss_pred CCCCChhhHHhHHHHHHHHHHHHHHhhhhcCCCCeEEEEEeCCcccCC
Q psy8786 319 KGWPDSAYAVSKIGVNLLTRIYQKKFDCELGNQDKVINAVHPGYVATN 366 (484)
Q Consensus 319 ~~~~~~~Y~aSKaAl~~lt~~LA~ela~~~~~~gIrVNaV~PG~V~T~ 366 (484)
...+...|+.+|.+.+.+++.++.+. ++.+..+.|..+.-|
T Consensus 133 ~~~~~~~Y~~~K~~~e~~~~~~~~~~-------~~~~~~~r~~~vyGp 173 (307)
T d1eq2a_ 133 YEKPLNVYGYSKFLFDEYVRQILPEA-------NSQIVGFRYFNVYGP 173 (307)
T ss_dssp GCCCSSHHHHHHHHHHHHHHHHGGGC-------SSCEEEEEECEEESS
T ss_pred ccccccccccccchhhhhcccccccc-------ccccccccceeEeec
Confidence 11234789999999999987665432 677888888777554
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.06 E-value=2.7e-05 Score=75.59 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
+.|+|+||||+|.||.+++++|+++ |++|++..|+..+..
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~R~~~~~~ 41 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLI 41 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhC-CCeEEEEECCcchhh
Confidence 4689999999999999999999998 899999999876543
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.02 E-value=0.0001 Score=68.57 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
.|+||||||+|.||++++++|+++ |+.|++.+|+...
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCcc
Confidence 477999999999999999999998 8999999997543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=97.95 E-value=1.7e-05 Score=74.84 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
++||||||+|.||++++++|+++ |..|+++.|+..
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~ 38 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEV 38 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCc
Confidence 44999999999999999999998 899999999754
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=97.59 E-value=0.0001 Score=68.81 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=56.1
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch-------hHHHHHHHHHh---c-----CCCCc---cHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK-------KGAEAVQVLKD---R-----ASTVP---FAIQAEKTIL 249 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~-------~~~~~~~~l~~---~-----~~~~~---~~~~~~~~~~ 249 (484)
.||||||+|-||.++++.|.++ | +++.++++.. +.+...+.++. + +.... .....+..+.
T Consensus 2 KILItG~tGfiG~~l~~~L~~~-g-~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~ 79 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPV-G-NLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQL 79 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTT-S-EEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhC-C-CEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCcccccc
Confidence 3999999999999999999986 5 4555544321 22333333332 2 11111 1234456788
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
+|+.++..+.+++.. .+.+++++||...+
T Consensus 80 ~n~~~~~~l~~~~~~---~~~~~~~~ss~~~~ 108 (298)
T d1n2sa_ 80 LNATSVEAIAKAANE---TGAWVVHYSTDYVF 108 (298)
T ss_dssp HHTHHHHHHHHHHTT---TTCEEEEEEEGGGS
T ss_pred ccccccccchhhhhc---cccccccccccccc
Confidence 999999988887643 24678888776553
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.89 E-value=0.00024 Score=62.55 Aligned_cols=93 Identities=13% Similarity=-0.004 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----CCCCccHHHHHHHHH-------hhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----ASTVPFAIQAEKTIL-------TNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~-------vN~~ 253 (484)
+|++|||+||++|+|.+.+...... |++|+.+++++++.+.+.+ +... .......+....... .|..
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-TTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHh-hhhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 5899999999999999887765555 8999999999877554433 2221 111111222211111 2333
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ...+..+..++++|+++.+....+
T Consensus 107 G~-~~~~~~~~~l~~~G~~v~~G~~~~ 132 (182)
T d1v3va2 107 GG-EFLNTVLSQMKDFGKIAICGAISV 132 (182)
T ss_dssp CH-HHHHHHGGGEEEEEEEEECCCGGG
T ss_pred Cc-hhhhhhhhhccCCCeEEeecceee
Confidence 42 356677888888999998875544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.79 E-value=0.00067 Score=58.39 Aligned_cols=45 Identities=7% Similarity=0.066 Sum_probs=39.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+|.|+|-|| |.+|+.+|+.|+++ |.+|++++|+.+++++..+.+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~-g~~V~v~dr~~~~a~~l~~~~~ 46 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSAGVQ 46 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTT-TCEEEEEESCHHHHHHHHTTCT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEECChHHHHHHHhccc
Confidence 588999887 89999999999999 8899999999999888766544
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0015 Score=49.39 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
++++++|+||++|+|...... ++.-|++|+.+.+++++.+-+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQl-ak~~G~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHH-HHHcCCeEEEEECCHHHHHHH
Confidence 578899999999999877774 544489999999998876644
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.61 E-value=0.0023 Score=55.03 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc-----CCCCccHHHH-HHHH---------H
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR-----ASTVPFAIQA-EKTI---------L 249 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~-----~~~~~~~~~~-~~~~---------~ 249 (484)
.|.+++|+| +|+||...+..+... |++|+++++++++.+.+.+ +... .......... +..- -
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~-~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN-CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCEEEEEc-ccccchhhHhhHhhh-cccccccchHHHHHHHHHH-cCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 567899997 679999988766555 8899999999998765543 3221 0111111121 1111 1
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
++..|.-...+.++..++++|+|+.++..
T Consensus 103 id~~g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSGNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCCChHHHHHHHHHHhcCCceEEEecC
Confidence 33445555667777888889999987643
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.41 E-value=0.0062 Score=53.48 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=56.8
Q ss_pred CCCE-EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCcc----------HHHHHHHHH----
Q psy8786 185 SERV-AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPF----------AIQAEKTIL---- 249 (484)
Q Consensus 185 ~gKv-aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~---- 249 (484)
.|.+ ++++||++|+|.+.+.-.-.. |++|+++.|+.++.++..+.+++.+..... .+.......
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~ 106 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG 106 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccC
Confidence 3554 455799999998887655445 899999988877777666655544221111 111111111
Q ss_pred -----hhhHHHHHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 250 -----TNYLGLVRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 250 -----vN~~g~~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
.|..|.- .....+..++++|++|.++...+.
T Consensus 107 ~vdvv~D~vg~~-~~~~~~~~l~~~G~~v~~G~~~~~ 142 (189)
T d1gu7a2 107 EAKLALNCVGGK-SSTGIARKLNNNGLMLTYGGMSFQ 142 (189)
T ss_dssp CEEEEEESSCHH-HHHHHHHTSCTTCEEEECCCCSSC
T ss_pred CceEEEECCCcc-hhhhhhhhhcCCcEEEEECCccCC
Confidence 1112212 235566788889999998776653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0031 Score=54.62 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=44.2
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
.+++||.|+|-|+ ||-+++++..|.+. |.+|+++.|+.+++++..+.+...
T Consensus 14 ~~~~~k~vlIlGa-GGaarai~~al~~~-g~~i~I~nRt~~ka~~l~~~~~~~ 64 (170)
T d1nyta1 14 FIRPGLRILLIGA-GGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHT 64 (170)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGG
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHhccc-ceEEEeccchHHHHHHHHHHHhhc
Confidence 5678999999996 78999999999998 778999999999988887766543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.34 E-value=0.00046 Score=61.08 Aligned_cols=93 Identities=12% Similarity=-0.021 Sum_probs=51.6
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCe-EEEEecCchhHHHHHHHHHhcC---CCCc-cHHHHHHHHH------hhhHH
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGY-IYLTARDKKKGAEAVQVLKDRA---STVP-FAIQAEKTIL------TNYLG 254 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~-Vvl~~R~~~~~~~~~~~l~~~~---~~~~-~~~~~~~~~~------vN~~g 254 (484)
+++|||+||+||+|...++-.-.. |+. |+.+++++++..+...++.... .... ..+....... .+..|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~-Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHT-TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCEEEEECCCchhhHHHHHHHHHc-CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 489999999999998777754445 765 5556666666666555554331 1111 1122221110 11222
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
- ...+..+..++++|+++.+.+.++
T Consensus 110 g-~~~~~~~~~l~~~G~iv~~G~~s~ 134 (187)
T d1vj1a2 110 G-DISNTVISQMNENSHIILCGQISQ 134 (187)
T ss_dssp H-HHHHHHHTTEEEEEEEEEC-----
T ss_pred c-hhHHHHhhhccccccEEEeccccc
Confidence 1 235567778888999999877665
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0053 Score=53.71 Aligned_cols=48 Identities=21% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
..++++|+|+|.|+ ||.|++++..|++.+..+++++.|+.++.+++..
T Consensus 13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 35789999999998 6999999999999955589999999887766544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.18 E-value=0.0012 Score=56.96 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc----CCCCccHHHHHHH-------HHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR----ASTVPFAIQAEKT-------ILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~----~~~~~~~~~~~~~-------~~vN~~ 253 (484)
.|.+++|.|+++++|..++..+...|...|+++++++++.+.+. ++... .......+...+. .-++..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~ 105 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINASMQDPLAEIRRITESKGVDAVIDLN 105 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence 57889999999999999998888874468999999988766543 34321 0111111111111 011222
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEe
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLS 276 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iS 276 (484)
|.-...+..+..++++|+|+.++
T Consensus 106 g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 106 NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CCHHHHTTGGGGEEEEEEEEECC
T ss_pred ccchHHHhhhhhcccCCEEEEec
Confidence 33344555667777888888775
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.09 E-value=0.0057 Score=52.52 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=43.1
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
++++|+++|.|+ |++|+.+++.|... |. +|.++.|+.+++++..+++..
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~~~ 70 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGG 70 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTC
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhhhc
Confidence 679999999998 99999999999998 55 799999999998888777653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0049 Score=53.26 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCC---C-CccHHHHHHHH-------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRAS---T-VPFAIQAEKTI-------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~---~-~~~~~~~~~~~-------~vN~~ 253 (484)
.|++|+|+||++++|...+...... |++|+++++++++.+.+ .++..... . ....+...... -.+..
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~-~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIV-LQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH-HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEEecccccccccccccccc-Ccccccccccccccccc-cccCcccccccccccHHHHhhhhhccCCceEEeecc
Confidence 6889999999999999887765555 89999999887765543 33322210 1 11112221111 12233
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSS 278 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ 278 (484)
|. ...+..+..++++|++|.++..
T Consensus 106 g~-~~~~~~~~~l~~~G~iv~~G~~ 129 (174)
T d1yb5a2 106 AN-VNLSKDLSLLSHGGRVIVVGSR 129 (174)
T ss_dssp HH-HHHHHHHHHEEEEEEEEECCCC
T ss_pred cH-HHHHHHHhccCCCCEEEEEecC
Confidence 43 2456667788888999988643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0032 Score=54.95 Aligned_cols=90 Identities=16% Similarity=0.031 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc---CCCCccH-HHHHHHHH----------
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR---ASTVPFA-IQAEKTIL---------- 249 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~-~~~~~~~~---------- 249 (484)
.|.+|+|+|+ |+||...+...... |+ +|+++++++++.+-+ +++... ....... +..+...+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSL-GAENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECC-Cccchhheeccccc-cccccccccccccccccc-ccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence 5899999997 79998887776666 76 799999999887644 444322 1111111 22222222
Q ss_pred hhhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 250 TNYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 250 vN~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
++..|.-...+..+..++++|+++.++-
T Consensus 105 id~vG~~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 105 LEATGDSRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EECSSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred eecCCchhHHHHHHHHhcCCCEEEEEee
Confidence 2233333455667778888899988763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.009 Score=51.34 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc---CCCCccHHHHHHHH----------Hh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR---ASTVPFAIQAEKTI----------LT 250 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~----------~v 250 (484)
.|.+++|.|+ |+||...+..+... |+ +|+++++++++++.+ +++... ...........+.+ -+
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a-~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKA-KEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHH-HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECC-CccHHHHHHHHHHc-CCceEEeccCCHHHHHHH-HHhCCcccccccccccccccccccccCCCCceEEE
Confidence 4678999986 89999888877777 66 799999999887754 344322 11111211111111 12
Q ss_pred hhHHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 251 NYLGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 251 N~~g~~~l~~allp~l~~~grIV~iSS 277 (484)
+..|.-...+..+..++++|+++.++-
T Consensus 103 d~~G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 103 ECTGAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp ECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred eccCCchhHHHHHHHhcCCCEEEEEec
Confidence 344555567777888888999998764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.89 E-value=0.004 Score=53.99 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCC-----------ccHHHHHHHHHhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTV-----------PFAIQAEKTILTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~vN~~ 253 (484)
+|.+|||+||+||+|...+. ||+.-|++|+.+++++++.+.+.+ +....... ...+.++.. ++..
T Consensus 23 ~~~~VLV~gaaGgVG~~avQ-lAk~~Ga~Viat~~s~~k~~~~~~-lGad~vi~~~~~~~~~~~~~~~~gvd~v--id~v 98 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVS-MLNKRGYDVVASTGNREAADYLKQ-LGASEVISREDVYDGTLKALSKQQWQGA--VDPV 98 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHH-HHHHHTCCEEEEESSSSTHHHHHH-HTCSEEEEHHHHCSSCCCSSCCCCEEEE--EESC
T ss_pred CCCEEEEeCCcchHHHHHHH-HHHHcCCceEEEecCHHHHHHHHh-hcccceEeccchhchhhhcccCCCceEE--EecC
Confidence 46789999999999988775 555548999999999888765533 32220000 000011111 1112
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
|-- .....+..++++|++|.+....+.
T Consensus 99 gg~-~~~~~~~~l~~~G~iv~~G~~~g~ 125 (167)
T d1tt7a2 99 GGK-QLASLLSKIQYGGSVAVSGLTGGG 125 (167)
T ss_dssp CTH-HHHHHHTTEEEEEEEEECCCSSCS
T ss_pred cHH-HHHHHHHHhccCceEEEeeccCCC
Confidence 212 234466677888999988877763
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0055 Score=53.00 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|++|+|+||++|+|...+...... |++|+++++++++.+.+.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~ 70 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSAL 70 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHH
Confidence 4789999999999998888766655 899999999998876543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.0058 Score=52.84 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|++|+|+||++++|...+...... |++|+.+++++++.+.+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~ 68 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALP 68 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHH
T ss_pred CCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccc
Confidence 6899999999999999887755444 88999999988776544
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0066 Score=53.06 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC--------CCCc-cHHHHHHHHHhhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA--------STVP-FAIQAEKTILTNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~--------~~~~-~~~~~~~~~~vN~~g~ 255 (484)
+++++||+||+||+|...+. |++.-|++|+.+++++++.+.+ +++..+. .... .....+.. ++..+-
T Consensus 31 ~~~~vlV~gasGGVG~~aiQ-lAk~~Ga~Via~~~~~~k~~~~-~~lGad~vi~~~~~~~~~~l~~~~~~~v--vD~Vgg 106 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVA-LLHKLGYQVVAVSGRESTHEYL-KSLGASRVLPRDEFAESRPLEKQVWAGA--IDTVGD 106 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHH-HHHHTTCCEEEEESCGGGHHHH-HHHTEEEEEEGGGSSSCCSSCCCCEEEE--EESSCH
T ss_pred CCCcEEEEEccccchHHHHH-HHHHcCCCeEEEecchhHHHHH-HhhccccccccccHHHHHHHHhhcCCee--EEEcch
Confidence 45689999999999976665 5555599999999998886644 4443320 0000 00000111 222222
Q ss_pred HHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
- .....++.++.+|+||.++...+.
T Consensus 107 ~-~~~~~l~~l~~~Griv~~G~~~~~ 131 (177)
T d1o89a2 107 K-VLAKVLAQMNYGGCVAACGLAGGF 131 (177)
T ss_dssp H-HHHHHHHTEEEEEEEEECCCTTCS
T ss_pred H-HHHHHHHHhccccceEeecccCCc
Confidence 2 245677788889999999877764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.54 E-value=0.0036 Score=54.13 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHHH----------hhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTIL----------TNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------vN~~g 254 (484)
.|.+++|.|+ +++|...+..+...|+..|+++++++++.+.+.+ +..........+.++...+ ++..|
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-cccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 5789999886 9999998888777744578888998887665443 3222111111122222222 23333
Q ss_pred HHHHHHHHHHhhhcCCEEEEEe
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLS 276 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iS 276 (484)
.-...+..+..++++|+++.++
T Consensus 110 ~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 110 SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp CHHHHHHGGGGEEEEEEEEECC
T ss_pred cchHHHHHHHHHhCCCEEEEEe
Confidence 3445666777888889999876
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.0066 Score=52.57 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc---C-CCCccHHHHHHHHH-------hhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR---A-STVPFAIQAEKTIL-------TNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~-------vN~~ 253 (484)
+|++|||+||++|+|...+...... |++|+++++++++.+.+ ++.... . ......+...+... .+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l-~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREML-SRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHH-HTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCCEEEEECCCCCcccccchhhccc-cccceeeeccccccccc-ccccccccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 5789999999999999988766555 89999999887765433 322211 0 11111122211110 1222
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeCCCc
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSSSAG 280 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS~ag 280 (484)
|. ...+.++..++++|++|.++...+
T Consensus 103 g~-~~~~~~~~~l~~~G~~v~~G~~~~ 128 (183)
T d1pqwa_ 103 AG-EAIQRGVQILAPGGRFIELGKKDV 128 (183)
T ss_dssp CT-HHHHHHHHTEEEEEEEEECSCGGG
T ss_pred cc-hHHHHHHHHhcCCCEEEEEccCCC
Confidence 32 234556677777888888764433
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.52 E-value=0.0058 Score=53.42 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHH----------HhhhHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTI----------LTNYLG 254 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~vN~~g 254 (484)
+|.+|||+||+||.|...+.- ++..|++|+.+++++++.+.+. ++......... +.++... -+|..|
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQl-ak~~Ga~Viat~~s~~k~~~~~-~lGa~~vi~~~-~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEHDYLR-VLGAKEVLARE-DVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCTTCHHHHH-HTTCSEEEECC----------CCSCCEEEEEECST
T ss_pred CCCEEEEEeccchHHHHHHHH-HHHcCCceEEecCchHHHHHHH-hcccceeeecc-hhHHHHHHHhhccCcCEEEEcCC
Confidence 588999999999999876665 5444999999999988866543 33222000000 1111110 011222
Q ss_pred HHHHHHHHHHhhhcCCEEEEEeCCCcc
Q psy8786 255 LVRTCVFLFPLLRRHARVVNLSSSAGH 281 (484)
Q Consensus 255 ~~~l~~allp~l~~~grIV~iSS~ag~ 281 (484)
-- .....+..++++||++.++...+.
T Consensus 108 g~-~~~~~l~~l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 108 GR-TLATVLSRMRYGGAVAVSGLTGGA 133 (176)
T ss_dssp TT-THHHHHHTEEEEEEEEECSCCSSS
T ss_pred ch-hHHHHHHHhCCCceEEEeecccCc
Confidence 11 245566778888999988887664
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.51 E-value=0.011 Score=51.15 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhc----CCCCccHHHHHHHH------HhhhH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDR----ASTVPFAIQAEKTI------LTNYL 253 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~------~vN~~ 253 (484)
.|.+|+|.|+ ++||...+..+... |+ .|+++++++++.+.+. ++... .......+...+.. -++..
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~-~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVC-GASIIIAVDIVESRLELAK-QLGATHVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCEEEEeCC-CHHHhhhhhccccc-ccceeeeeccHHHHHHHHH-HcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 5788999987 89999999877777 55 5667788887766543 44322 11111122222221 13344
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 254 GLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 254 g~~~l~~allp~l~~~grIV~iSS 277 (484)
|.-...+..+..++++|+++.++.
T Consensus 105 G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 105 GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CcHHHHHHHHhcccCceEEEEEee
Confidence 555566777788888999998764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.44 E-value=0.013 Score=50.79 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
.+++||.|+|-|+ ||-+++++..|.+. +.+|+++.|+.+++++..+.+...
T Consensus 14 ~~~~~k~vlIlGa-GGaarai~~aL~~~-~~~i~I~nR~~~~a~~l~~~~~~~ 64 (171)
T d1p77a1 14 WLRPNQHVLILGA-GGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPY 64 (171)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGG
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHccc-CceeeeccchHHHHHHHHHHHhhc
Confidence 5678999999976 67899999999975 779999999999999888877643
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.35 E-value=0.0085 Score=50.46 Aligned_cols=83 Identities=19% Similarity=0.120 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcCCCCccHHHHHHHHHhhhHHHHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRASTVPFAIQAEKTILTNYLGLVRTCVFLFP 264 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vN~~g~~~l~~allp 264 (484)
.-|++.|.||.|-||..+|+.|.++ |+.|.+.+|+.+...+... ... .... ..+.......+...+.+
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~~~~~~~~~--~~~-~~v~--------~~~~~~~~~~v~~~~~~ 75 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDWAVAESIL--ANA-DVVI--------VSVPINLTLETIERLKP 75 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCGGGHHHHH--TTC-SEEE--------ECSCGGGHHHHHHHHGG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc-CCCcEecccccccccchhh--hhc-cccc--------cccchhhheeeeecccc
Confidence 4467999999999999999999998 8999999998765443321 111 0000 01111223344556777
Q ss_pred hhhcCCEEEEEeCCC
Q psy8786 265 LLRRHARVVNLSSSA 279 (484)
Q Consensus 265 ~l~~~grIV~iSS~a 279 (484)
.++++.-|+-++|..
T Consensus 76 ~~~~~~iiiD~~Svk 90 (152)
T d2pv7a2 76 YLTENMLLADLTSVK 90 (152)
T ss_dssp GCCTTSEEEECCSCC
T ss_pred cccCCceEEEecccC
Confidence 777777777777753
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.11 E-value=0.017 Score=50.02 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhc
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDR 234 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~ 234 (484)
.+++||.|+|-|+ ||.+++++.+|.+. .+|.+..|+.+++++..+.+...
T Consensus 14 ~~~~~k~vlIlGa-GG~arai~~aL~~~--~~i~I~nR~~~ka~~l~~~~~~~ 63 (177)
T d1nvta1 14 GRVKDKNIVIYGA-GGAARAVAFELAKD--NNIIIANRTVEKAEALAKEIAEK 63 (177)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHTSS--SEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHccc--cceeeehhhhhHHHHHHHHHHHh
Confidence 4579999999986 57999999999764 48999999999999888777543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.011 Score=45.69 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
+++||+++|.|. +.-|+++|+.|+++ |++|++.|.+.+
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~-g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLAR-GVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHT-TCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHC-CCEEEEeeCCcC
Confidence 578999999998 55799999999999 899999988654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.89 E-value=0.0073 Score=52.44 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCCCCc----cHHHHHHHH-------Hhhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRASTVP----FAIQAEKTI-------LTNY 252 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~-------~vN~ 252 (484)
.|.+|+|.|+ ||||...+..+... |+ +|+++++++++.+.+ +++........ ..+...+.. -++.
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a-~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAA-KFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHH-HHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcc-cccccccccchhhhHHHH-HhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence 5778999986 89999877766665 65 799999998876654 34432211111 112222211 1233
Q ss_pred HHHHHHHHHHHHhhhcCCEEEEEeC
Q psy8786 253 LGLVRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 253 ~g~~~l~~allp~l~~~grIV~iSS 277 (484)
.|.-...+..+..++++|+++.++-
T Consensus 104 ~g~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 104 GGGSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp SSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred cCCHHHHHHHHHHHhcCCEEEEEee
Confidence 4444556667777888899988764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.88 E-value=0.081 Score=44.29 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=36.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHh
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.+.+.|.|+ |.+|..+|..|+.++- ..|+++|+++++++....++..
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~ 52 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED 52 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHG
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhc
Confidence 346777786 8899999999999832 4799999999877655555544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.82 E-value=0.027 Score=48.38 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
.|.+|+|.|+ +|+|...+..+...++.+|+++++++++.+.+.+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence 6789999999 6899999999998855689999999998775433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.025 Score=48.29 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=33.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|.+++|.|+ |++|...+..+... |++|+++++++++.+.+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKREDAM 68 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHH
T ss_pred CCCEEEEECC-CCcchhHHHHhhhc-cccccccccchhHHHHhh
Confidence 5789999987 89999877655455 899999999998877543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.66 E-value=0.021 Score=49.06 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
++|.|+|-|+ ||.+++++..|.+.|-.+|.++.|+.+++++..+.+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~ 62 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG 62 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh
Confidence 5688999986 7999999999999833479999999998887766543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.47 E-value=0.036 Score=47.87 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
.|.+|+|.|+ +|+|...+..+...|..+|+++++++++++-+.+
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence 5889999986 8999999998888844689999999999875443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.28 E-value=0.11 Score=43.57 Aligned_cols=48 Identities=23% Similarity=0.131 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.++.+.|.|+ |.+|..+|..++..+-+ .|++.|++++.++....++..
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~ 53 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH 53 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhh
Confidence 4567888897 89999999999997323 699999999887766556653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.18 E-value=0.041 Score=44.90 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=36.3
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
.|+|.|+ |-+|+.+|+.|.++ |..|+++++|++..++..+++
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~-g~~v~vid~d~~~~~~~~~~~ 43 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEK-GHDIVLIDIDKDICKKASAEI 43 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC
T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCcceecCChhhhhhhhhhh
Confidence 4899998 78999999999998 899999999999888765543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.13 E-value=0.042 Score=46.48 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|.+++|.|+ ++||...+..+... |++|+++++++++.+.+.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAM-GLHVAAIDIDDAKLELAR 68 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHc-CCccceecchhhHHHhhh
Confidence 5788999886 99999877655555 789999999988876543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.13 E-value=0.034 Score=44.32 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.++++||+++|.||+. +|..-|+.|++. |++|++++....
T Consensus 7 ~l~l~~k~vlVvG~G~-va~~ka~~ll~~-ga~v~v~~~~~~ 46 (113)
T d1pjqa1 7 FCQLRDRDCLIVGGGD-VAERKARLLLEA-GARLTVNALTFI 46 (113)
T ss_dssp EECCBTCEEEEECCSH-HHHHHHHHHHHT-TBEEEEEESSCC
T ss_pred EEEeCCCEEEEECCCH-HHHHHHHHHHHC-CCeEEEEeccCC
Confidence 3588999999999876 999999999999 899988876644
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.046 Score=47.95 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=37.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
|+|.|-|| |-||..+|..|+.. |..|++.|++++.++++.+.++
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~ 48 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAAT-GHTVVLVDQTEDILAKSKKGIE 48 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhC-CCcEEEEECChHHHHHHHhhHH
Confidence 67888888 56999999999998 8999999999988777666554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.95 E-value=0.051 Score=46.72 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|.+|+|.|+ +|+|...+..+...|..+|+++++++++++.+.
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~ 69 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 69 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence 6789999986 899999999888884457999999999887554
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.033 Score=50.25 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEcC----------------CchHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 182 VDPSERVAVVTGA----------------NKGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 182 ~~L~gKvaLITGa----------------ssGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
.||+||.||||+| ||-.|.++|+++.++ |++|.++.-.
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~-Ga~V~li~g~ 55 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR-GANVTLVSGP 55 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT-TCEEEEEECS
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHc-CCchhhhhcc
Confidence 3689999999997 478999999999999 9999887553
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.51 E-value=0.24 Score=40.98 Aligned_cols=45 Identities=18% Similarity=0.006 Sum_probs=34.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
|.+.|.|+ |.+|.++|..|+.++-+++++.|.+++.++....++.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~ 46 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLY 46 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhh
Confidence 34666686 8999999999998855689999998887665555553
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.48 E-value=0.073 Score=45.28 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
.|.+|+|.|+ +|+|...+..++..++.+|+++++++++++.+.
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~ 70 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 70 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence 6788999985 678888888888885668999999999876544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=93.40 E-value=0.21 Score=42.96 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHhc
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQ 209 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~ 209 (484)
-.|.||||+|+||..++..|++.
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g 47 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASG 47 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT
T ss_pred cEEEEECCCcHHHHHHHHHHHcC
Confidence 35999999999999999999873
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.34 E-value=0.069 Score=47.26 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+|+||+++|-| -|.+|..+|+.|.+. |++|++++.+.+.....
T Consensus 23 ~~L~gk~v~IqG-~G~VG~~~A~~L~~~-Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 23 GSLDGLTVLVQG-LGAVGGSLASLAAEA-GAQLLVADTDTERVAHA 66 (201)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHH
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEecchHHHHHHH
Confidence 468999999998 566999999999999 89999999887766543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.33 E-value=0.23 Score=41.70 Aligned_cols=47 Identities=11% Similarity=-0.085 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+.+.+.|.|+ |.+|..+|..++..+-+++++.|.+++.++..+.++.
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~ 52 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLS 52 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHH
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHh
Confidence 4466777897 8999999998888744589999999887665555554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.24 E-value=0.2 Score=41.51 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=30.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
+.|.|+ |.+|..+|..++.++-. .+++.|++++.++....++..
T Consensus 4 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~ 48 (142)
T d1y6ja1 4 VAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH 48 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTT
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeecc
Confidence 445586 99999999999987433 699999998876555555553
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=93.06 E-value=0.17 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCchHHHHHHHHHHhc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQ 209 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~ 209 (484)
.|.|+||+|.+|..++..|+..
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHHHhc
Confidence 5999999999999999999975
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.03 E-value=0.081 Score=44.97 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=35.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
|++.|.|| |.+|.++|..|+++ |++|.+.+|+++..+...+
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~-G~~V~~~~r~~~~~~~~~~ 42 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALK-GQSVLAWDIDAQRIKEIQD 42 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECc-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH
Confidence 78889987 67999999999998 8999999999887766543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.095 Score=44.40 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.|.+|+|.|+ ||||...+...-.. |+++++++++.++.+ ..+++..
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~-Ga~~i~~~~~~~~~~-~a~~lGa 75 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAM-GAHVVAFTTSEAKRE-AAKALGA 75 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSGGGHH-HHHHHTC
T ss_pred CCCEEEEecc-chHHHHHHHHhhcc-cccchhhccchhHHH-HHhccCC
Confidence 5789999986 89998877554444 889889999888765 3345543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.031 Score=46.86 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=33.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
..+++||++||.||+ .+|..-|+.|++. |++|++++..
T Consensus 8 ~~~l~gkrvLViGgG-~va~~ka~~Ll~~-GA~VtVvap~ 45 (150)
T d1kyqa1 8 AHQLKDKRILLIGGG-EVGLTRLYKLMPT-GCKLTLVSPD 45 (150)
T ss_dssp EECCTTCEEEEEEES-HHHHHHHHHHGGG-TCEEEEEEEE
T ss_pred heeeCCCEEEEECCC-HHHHHHHHHHHHC-CCEEEEEeCC
Confidence 356899999999995 5999999999999 8999988654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.79 E-value=0.1 Score=44.21 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
.|.+|+|.|+ +|+|...+..+...|...|+++++++++.+. .+++.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~lG 73 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEFG 73 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHHT
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHhC
Confidence 5789999998 5999988888777734578888888887654 44554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.71 E-value=0.066 Score=46.58 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=36.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
|+|.|-|| |=||..+|..|+.. |..|++.|++++.+++..+.+.
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~ 48 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASK-GTPILMKDINEHGIEQGLAEAA 48 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhC-CCeEEEEECCHHHHhhhhhhhh
Confidence 45778887 66999999999998 8999999999988777666544
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=92.69 E-value=0.4 Score=39.37 Aligned_cols=42 Identities=17% Similarity=0.028 Sum_probs=32.2
Q ss_pred EEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l 231 (484)
+.|.|| |.+|..+|..++..+- ..+++.|++++.++....++
T Consensus 3 I~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~ 45 (142)
T d1guza1 3 ITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDM 45 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHH
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhh
Confidence 566686 8999999999998732 37999999988766544444
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.47 E-value=0.11 Score=45.39 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.|.+|+|.|+ ++||...+......++.+|+++++++++++.+
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a 66 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA 66 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhh
Confidence 5789999986 79998777776666455899999998877644
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.34 E-value=0.098 Score=43.93 Aligned_cols=90 Identities=13% Similarity=-0.016 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHhcC---CC-CccHHHHHHHHH-----hhhHHH
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKDRA---ST-VPFAIQAEKTIL-----TNYLGL 255 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~~~---~~-~~~~~~~~~~~~-----vN~~g~ 255 (484)
.|++++|.|+ |+||...+..+... |++|+++++++++.+.+.+ +.... .. ....+....... +...+.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~-~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 103 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE-LGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS 103 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH-TTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred CCCEEEEeec-ccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh-cCcceecccccchhhhhcccccCCCceEEeecCC
Confidence 5788999875 88998766655554 8899999999988765433 32220 11 111111111100 011122
Q ss_pred HHHHHHHHHhhhcCCEEEEEeC
Q psy8786 256 VRTCVFLFPLLRRHARVVNLSS 277 (484)
Q Consensus 256 ~~l~~allp~l~~~grIV~iSS 277 (484)
-......+..++++|+++.++-
T Consensus 104 ~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 104 KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHHHHHhccCCceEeccc
Confidence 2345666777777888887653
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.16 Score=43.28 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKG 224 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~ 224 (484)
..|.||+++|.|=+ -||+.+|+.+... |++|++++.++.++
T Consensus 20 ~~l~Gk~v~V~GyG-~iG~g~A~~~rg~-G~~V~v~e~dp~~a 60 (163)
T d1li4a1 20 VMIAGKVAVVAGYG-DVGKGCAQALRGF-GARVIITEIDPINA 60 (163)
T ss_dssp CCCTTCEEEEECCS-HHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred ceecCCEEEEeccc-cccHHHHHHHHhC-CCeeEeeecccchh
Confidence 56899999999854 7999999999998 99999999987553
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=91.90 E-value=0.068 Score=43.38 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=34.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
|.++|.|+ |-+|+.+|+.|.++ |..|++++.+++..+++.+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~-g~~vvvid~d~~~~~~~~~ 41 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRM-GHEVLAVDINEEKVNAYAS 41 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHT-TCCCEEEESCHHHHHHTTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCeEEEecCcHHHHHHHHH
Confidence 45777777 57999999999998 8999999999988776543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=91.88 E-value=0.57 Score=39.50 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
..+.+.|.|+ |.+|..+|..++.++-+ .+++.|++++.++..+.++..
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h 67 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH 67 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhc
Confidence 4456777786 88999999999998433 699999998887766666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.65 E-value=0.18 Score=43.18 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHhcCC-----CCccHHHHHHH-------HHhh
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKDRAS-----TVPFAIQAEKT-------ILTN 251 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~-------~~vN 251 (484)
.|.+|+|.|+ ||||...+..+... |+ +|+++++++++.+-+ +++..... .....+..... .-++
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a-~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIA-GASRIIAIDINGEKFPKA-KALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHH-HHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHh-CCceeeeeccchHHHHHH-HHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 5789999975 99999888887777 55 788999999886543 44432211 01111111111 1122
Q ss_pred hHHHHHHHHHHHHhhhcC-CEEEEEeC
Q psy8786 252 YLGLVRTCVFLFPLLRRH-ARVVNLSS 277 (484)
Q Consensus 252 ~~g~~~l~~allp~l~~~-grIV~iSS 277 (484)
..|.-...+..+..++++ |+++.++-
T Consensus 105 ~~G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 105 CAGTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred ecccchHHHHHHHHhhcCCeEEEecCC
Confidence 344445566666777775 88888764
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.26 E-value=0.21 Score=42.25 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=37.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 184 PSERVAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 184 L~gKvaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
++...+.|.|+ |.+|..+|..++..+-+ .+++.|++++.++..+.++..
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~ 66 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQH 66 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhC
Confidence 34445667786 89999999999987433 699999998887766666654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=90.57 E-value=0.6 Score=38.62 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=35.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHh
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
|.+.|.|+ |.+|..+|..++.++- ..+++.|+++++++....++..
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~ 48 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQD 48 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhc
Confidence 55777885 8999999999998732 3799999998887655555543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.56 E-value=0.26 Score=40.86 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=30.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKG 224 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~ 224 (484)
.+.|.||+|.+|.++|..|+.++-. .+++.|.++.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~ 39 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG 39 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch
Confidence 3789999999999999999987332 688999876543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.27 Score=41.91 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=39.8
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
..++.||+++|.|-|.=+|+-++..|.++ |+.|+++.......++.
T Consensus 32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~-gatVt~~h~~t~~l~~~ 77 (166)
T d1b0aa1 32 NIDTFGLNAVVIGASNIVGRPMSMELLLA-GCTTTVTHRFTKNLRHH 77 (166)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTT-TCEEEEECSSCSCHHHH
T ss_pred CcccccceEEEEeccccccHHHHHHHHHh-hccccccccccchhHHH
Confidence 46789999999999999999999999998 89999998877665443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=89.97 E-value=1.2 Score=36.52 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=33.4
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHHh
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
+.|.|+ |.+|.++|..++.++-+ .+++.|+++++++....++..
T Consensus 4 i~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~ 48 (143)
T d1llda1 4 LAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH 48 (143)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHh
Confidence 556686 89999999999987333 699999998877655555543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.88 E-value=0.2 Score=42.03 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=31.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
+.|-|. |-+|.++|+.|.+. |.+|++.+|+++..+++.+
T Consensus 3 I~iIG~-G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~ 41 (165)
T d2f1ka2 3 IGVVGL-GLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVE 41 (165)
T ss_dssp EEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred EEEEee-cHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHH
Confidence 455555 88999999999998 8999999999887665543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.79 E-value=1 Score=36.76 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=32.8
Q ss_pred EEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCchhHHHHHHHHHh
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
+.|.|+ |.+|..+|..++.++- ..+++.|+++++++....++..
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~ 47 (140)
T d1a5za1 3 IGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH 47 (140)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccc
Confidence 455686 8899999999988733 3799999998877655555443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.65 E-value=0.72 Score=38.31 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=33.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.+.|.|+ |++|..+|..++..+=.++++.|++++.++....++..
T Consensus 5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~ 49 (150)
T d1t2da1 5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSH 49 (150)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHT
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhh
Confidence 3666685 89999999888876444799999998877655555543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=89.39 E-value=0.5 Score=40.01 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=35.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQV 230 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~ 230 (484)
++|-|.|- |-+|.++|+.|++. |.+|++.+|++++.+++.++
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~-G~~V~v~dr~~~~~~~l~~~ 44 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDH-GFVVCAFNRTVSKVDDFLAN 44 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSTHHHHHHHHT
T ss_pred CcEEEEeE-hHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHHh
Confidence 34667775 67999999999998 89999999999988876553
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.26 E-value=1.1 Score=36.84 Aligned_cols=43 Identities=16% Similarity=0.011 Sum_probs=32.6
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCC-eEEEEecCchhHHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDG-YIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga-~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+.|.|+ |.+|.++|..++.++-. .+++.|++++.++....++.
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~ 46 (142)
T d1ojua1 3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLA 46 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHH
T ss_pred EEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHh
Confidence 556686 89999999999987333 69999999887665444444
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.25 Score=42.25 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=40.0
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAE 226 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~ 226 (484)
..+++||.|+|.|-|.=+|+-++..|+++ |+.|.++........+
T Consensus 34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~-gatVt~~~~~t~~l~~ 78 (170)
T d1a4ia1 34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWN-NATVTTCHSKTAHLDE 78 (170)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSSHHH
T ss_pred CcccccceEEEEecCCccchHHHHHHHhc-cCceEEEecccccHHH
Confidence 46789999999999999999999999999 9999999887766543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.47 E-value=1.2 Score=36.72 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=33.0
Q ss_pred EEEEcCCchHHHHHHHHHHhcCC-CeEEEEecCch--hHHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFD-GYIYLTARDKK--KGAEAVQVLK 232 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gg-a~Vvl~~R~~~--~~~~~~~~l~ 232 (484)
+.|.||+|.+|.++|..++.++- ..+++.|++++ +++....++.
T Consensus 3 V~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~ 49 (145)
T d1hyea1 3 VTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIY 49 (145)
T ss_dssp EEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccch
Confidence 88999999999999999998732 37999998863 3343344443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=88.30 E-value=0.49 Score=42.37 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+.+|+||+++|-|- |-+|..+|+.|.+. |++|++++.+....+....+.
T Consensus 34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~-Gakvv~~d~~~~~~~~~~~~~ 82 (230)
T d1leha1 34 SDSLEGLAVSVQGL-GNVAKALCKKLNTE-GAKLVVTDVNKAAVSAAVAEE 82 (230)
T ss_dssp SCCCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEeecccHHHHHHHHHhc
Confidence 45689999999985 56999999999999 899999998887776665543
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=88.18 E-value=1.4 Score=36.13 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=32.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCC-eEEEEecC--chhHHHHHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDG-YIYLTARD--KKKGAEAVQVLK 232 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga-~Vvl~~R~--~~~~~~~~~~l~ 232 (484)
.+.|.||+|.+|.++|..++.++-. .+++.|.+ ++.++....++.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~ 49 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTN 49 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchh
Confidence 3789999999999999999987433 58888864 333443333443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.76 E-value=1.1 Score=37.00 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=31.8
Q ss_pred EEEEEcCCchHHHHHHHHHHhc-C-CCeEEEEecCchhHHHHHHHHHh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQ-F-DGYIYLTARDKKKGAEAVQVLKD 233 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~-g-ga~Vvl~~R~~~~~~~~~~~l~~ 233 (484)
.+.|+|++|.+|.++|..|+.+ + ...+++.|.++ ..+....++..
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h 48 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSH 48 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHT
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHC
Confidence 3789999999999999988754 2 34799999864 34433344443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=87.57 E-value=0.39 Score=40.65 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 194 ANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 194 assGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
|-|-+|.++|++|++. |.+|.+.+|++++.+++.++-
T Consensus 8 GlG~MG~~ma~~L~~~-G~~V~~~dr~~~~~~~l~~~~ 44 (178)
T d1pgja2 8 GLGVMGANLALNIAEK-GFKVAVFNRTYSKSEEFMKAN 44 (178)
T ss_dssp CCSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHcC
Confidence 5678999999999998 899999999999888776653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.13 E-value=0.3 Score=40.39 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=29.9
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchh
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKK 223 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~ 223 (484)
+|.|.|+ |.||..+|..|++. |.+|.+++|+++.
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~-G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQ-GHEVQGWLRVPQP 35 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSCCS
T ss_pred EEEEECc-CHHHHHHHHHHHHC-CCceEEEEcCHHH
Confidence 3778887 89999999999998 8999999998753
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=86.23 E-value=0.6 Score=38.47 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=34.1
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVL 231 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l 231 (484)
+.+-|+ |-+|.++++.|.+.++.+|++++|++++.++..++.
T Consensus 3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~ 44 (152)
T d1yqga2 3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL 44 (152)
T ss_dssp EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT
T ss_pred EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc
Confidence 455565 789999999999985589999999998887766654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.25 E-value=0.69 Score=38.41 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCchHHHHHHHHHHhc
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQ 209 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~ 209 (484)
.|.|+||+|.+|.++|..|+..
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~ 26 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNG 26 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.20 E-value=0.71 Score=38.43 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=32.8
Q ss_pred CEEEEEcCCchHHHHHHHHHHhcCCC--eEEEEecCchhHHHHHH
Q psy8786 187 RVAVVTGANKGLGFGIVKSLCEQFDG--YIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 187 KvaLITGassGIG~aiA~~La~~gga--~Vvl~~R~~~~~~~~~~ 229 (484)
|+++|.|. |-||.++|+.|.+. |. +|+..|++++..+.+.+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~ 44 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD 44 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHH
Confidence 45788875 78999999999987 54 68889999887766554
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.86 E-value=0.58 Score=39.91 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=35.1
Q ss_pred CCCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 181 SVDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 181 ~~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
..+++||.++|.|-|.=+|+-+|..|+++ |+.|..+..+
T Consensus 24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~-gaTVt~~~~~ 62 (171)
T d1edza1 24 GNRLYGKKCIVINRSEIVGRPLAALLAND-GATVYSVDVN 62 (171)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSS
T ss_pred cCCCCCCEEEEECCccccHHHHHHHHHHC-CCEEEEeccc
Confidence 35789999999999999999999999998 8999888765
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=84.67 E-value=0.53 Score=39.24 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.9
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQ 229 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~ 229 (484)
|-|.| -|-+|.++|+.|+++ |..|++.+|++++.+++.+
T Consensus 3 IgiIG-lG~MG~~~A~~L~~~-G~~V~~~d~~~~~~~~~~~ 41 (161)
T d1vpda2 3 VGFIG-LGIMGKPMSKNLLKA-GYSLVVSDRNPEAIADVIA 41 (161)
T ss_dssp EEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred EEEEe-hhHHHHHHHHHHHHC-CCeEEEEeCCcchhHHHHH
Confidence 44455 477999999999998 8999999999888776654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.29 E-value=0.62 Score=38.55 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=33.5
Q ss_pred EEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHH
Q psy8786 189 AVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAVQVLK 232 (484)
Q Consensus 189 aLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~~~l~ 232 (484)
+.|- |.|-+|.++++.|.+. +.+|++.+|+.++.++..++..
T Consensus 3 Ig~I-G~G~mG~al~~~l~~~-~~~i~v~~r~~~~~~~l~~~~g 44 (152)
T d2ahra2 3 IGII-GVGKMASAIIKGLKQT-PHELIISGSSLERSKEIAEQLA 44 (152)
T ss_dssp EEEE-CCSHHHHHHHHHHTTS-SCEEEEECSSHHHHHHHHHHHT
T ss_pred EEEE-eccHHHHHHHHHHHhC-CCeEEEEcChHHhHHhhccccc
Confidence 3344 5667999999999998 8899999999888877666553
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=83.81 E-value=0.48 Score=40.94 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=31.2
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEA 227 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~ 227 (484)
.+.|-||+. .|.++|..|++. |.+|.+.+|+++..++.
T Consensus 9 KI~ViGaG~-wGtAlA~~La~~-g~~V~l~~r~~~~~~~i 46 (189)
T d1n1ea2 9 KAVVFGSGA-FGTALAMVLSKK-CREVCVWHMNEEEVRLV 46 (189)
T ss_dssp EEEEECCSH-HHHHHHHHHHTT-EEEEEEECSCHHHHHHH
T ss_pred eEEEECCCH-HHHHHHHHHHHc-CCeEEEEEecHHHHHHH
Confidence 477888665 899999999997 78999999998766543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.41 E-value=0.98 Score=37.54 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=31.6
Q ss_pred EEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Q psy8786 188 VAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGAEAV 228 (484)
Q Consensus 188 vaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~~~~ 228 (484)
+|-|.| .|-+|.++|++|+++ |..|.+.+|+.++.+.+.
T Consensus 3 kIg~IG-lG~MG~~iA~~L~~~-g~~v~~~d~~~~~~~~~~ 41 (162)
T d3cuma2 3 QIAFIG-LGHMGAPMATNLLKA-GYLLNVFDLVQSAVDGLV 41 (162)
T ss_dssp EEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSSHHHHHHHH
T ss_pred EEEEEE-EHHHHHHHHHHHHHC-CCeEEEEECchhhhhhhh
Confidence 355554 567999999999998 899999999988766554
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=81.18 E-value=1.6 Score=36.70 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCchhHH
Q psy8786 182 VDPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKKKGA 225 (484)
Q Consensus 182 ~~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~~~~ 225 (484)
.-+.||+++|-|= +-+|+.+|+++... |++|+++..|+-++-
T Consensus 19 ~~laGk~vvV~GY-G~vGrG~A~~~rg~-Ga~V~V~E~DPi~al 60 (163)
T d1v8ba1 19 FLISGKIVVICGY-GDVGKGCASSMKGL-GARVYITEIDPICAI 60 (163)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHH-TCEEEEECSCHHHHH
T ss_pred ceecCCEEEEecc-cccchhHHHHHHhC-CCEEEEEecCchhhH
Confidence 4579999999984 56999999999998 999999999986533
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=81.15 E-value=0.69 Score=40.64 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecC
Q psy8786 186 ERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARD 220 (484)
Q Consensus 186 gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~ 220 (484)
||+|+|.||+ -=|..+|..|+++ |.+|++..++
T Consensus 1 ~KkV~IIGaG-~aGL~aA~~La~~-G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAG-VSGLAAAYKLKIH-GLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCS-HHHHHHHHHHHTT-SCEEEEECSS
T ss_pred CCEEEEECcC-HHHHHHHHHHHhC-CCCEEEEeCC
Confidence 5788888876 3478899999998 8899999764
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.89 E-value=1.2 Score=38.13 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 183 DPSERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 183 ~L~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.+.||++.|-|.++ ||+.+|+.+..- |.+|+..+|+..
T Consensus 39 ~l~gk~vgIiG~G~-IG~~va~~l~~~-g~~v~~~d~~~~ 76 (181)
T d1qp8a1 39 LIQGEKVAVLGLGE-IGTRVGKILAAL-GAQVRGFSRTPK 76 (181)
T ss_dssp CCTTCEEEEESCST-HHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred cccCceEEEecccc-ccccceeeeecc-cccccccccccc
Confidence 47899999999766 999999999887 889999998754
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=80.13 E-value=1.3 Score=35.12 Aligned_cols=36 Identities=8% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHhcCCCeEEEEecCch
Q psy8786 185 SERVAVVTGANKGLGFGIVKSLCEQFDGYIYLTARDKK 222 (484)
Q Consensus 185 ~gKvaLITGassGIG~aiA~~La~~gga~Vvl~~R~~~ 222 (484)
.+|+++|.|| |-+|.++|..|++. |.+|.++.+.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~-g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTA-GVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcc-cceEEEEeeccc
Confidence 4578888875 57999999999998 899999998765
|