Diaphorina citri psyllid: psy8860


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MSMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF
ccccccHHHHHHHHHccEEccccEEEEccHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEccccccHHHHHccccccEEEEEcccccccHHccccEEEEEcccccccccccccccccccccccccEEEEEccEEEEEcccEEEEEECcccCEEEEcccEEEEEEccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEEEEcccEEEEEcccccccccccccccEEEcccccEEEEEEccHHHHHHHHHHHHcccccccccccccccEEEcccEEEEEccccccEEEEEHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccEEEEEcccccCCccHHHHHHHHHHHccccc
****DPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGL**
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MSMSDPIADMLTYIRNGQIVNKKKIIMPSSKIKIAIAKVLKDEGYIKDFFIIKCFKNKFELKILLKYYMNRPVIECLKRVSRPGLRIYKNKDNIPKIMNGLGLVIISTASGIITDRKARSMGKMPIFIPPNVEVTLNSNKITLKGPLGILKQNKNNLVNIKNDSNVLYFTAINNSRIAKSMSGTMRSIINNMIIGVTKGFEKKLQLIGVGFRAKIEKNYLNLILGFSHPILYKIPFDIICETPSQTEILIKGINKQAVGHVAAEIRRYYKPEPYKGINRLMVHRTNLHIYANIISSNAKILISASTLEKEVRLTLNTKLGKGGNTFAASIIGQRIAKKALKIGITKVAFDRSGFRYHGRIKFLADAARKNGLNF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
50S ribosomal protein L6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.confidentQ3SLN4
50S ribosomal protein L6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.confidentA4SUX6
50S ribosomal protein L6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.confidentQ2L270

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0022626 [CC]cytosolic ribosomeprobableGO:0005737, GO:0032991, GO:0005840, GO:0043232, GO:0005829, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0044445, GO:0044424, GO:0043228, GO:0005622, GO:0043226
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0009536 [CC]plastidprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0044391 [CC]ribosomal subunitprobableGO:0005737, GO:0005575, GO:0032991, GO:0005840, GO:0043232, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0044446, GO:0044444, GO:0043228, GO:0044424, GO:0005622, GO:0043226, GO:0044422

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1RL6, chain A
Confidence level:very confident
Coverage over the Query: 125-285
View the alignment between query and template
View the model in PyMOL
Template: 1SEI, chain A
Confidence level:very confident
Coverage over the Query: 2-126
View the alignment between query and template
View the model in PyMOL
Template: 3BBO, chain Q
Confidence level:very confident
Coverage over the Query: 270-374
View the alignment between query and template
View the model in PyMOL