Diaphorina citri psyllid: psy9025


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHREDIHESHITSE
cccccccccccHHHHHHcccccEEEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEEccccccEEEEEEEEEEEEEEccEEEEEEccccEEEccccccccccccccCEEEEccEEccccccHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLI****************************************V*Q****************************************************************************
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HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHREDIHESHITSE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cyclic nucleotide-gated cation channel beta-1 Isoform GARP2 is a high affinity rod photoreceptor phosphodiesterase (PDE6)-binding protein that modulates its catalytic properties: it is a regulator of spontaneous activation of rod PDE6, thereby serving to lower rod photoreceptor 'dark noise' and allowing these sensory cells to operate at the single photon detection limit.confidentQ14028
Cyclic nucleotide-gated cation channel alpha-3 Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones (By similarity). Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3.confidentQ9JJZ8
Cyclic nucleotide-gated cation channel beta-1 Subunit of cyclic nucleotide-gated (CNG) channels, nonselective cation channels, which play important roles in both visual and olfactory signal transduction. When associated with CNGA1, it is involved in the regulation of ion flow into the rod photoreceptor outer segment (ROS), in response to light-induced alteration of the levels of intracellular cGMP.confidentQ28181

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0043204 [CC]perikaryonprobableGO:0044464, GO:0044297, GO:0005623, GO:0005575, GO:0097458, GO:0043025
GO:0005223 [MF]intracellular cGMP activated cation channel activityprobableGO:0022891, GO:0008324, GO:0005261, GO:0043855, GO:0005221, GO:0005215, GO:0005216, GO:0005217, GO:0015276, GO:0015075, GO:0022857, GO:0015267, GO:0003674, GO:0022836, GO:0022892, GO:0022834, GO:0022803, GO:0022839, GO:0022838
GO:0009653 [BP]anatomical structure morphogenesisprobableGO:0032502, GO:0048856, GO:0008150
GO:0051591 [BP]response to cAMPprobableGO:1901700, GO:0009719, GO:0050896, GO:1901698, GO:0010243, GO:0010033, GO:0008150, GO:0042221, GO:0014074, GO:0046683, GO:0014070
GO:0032026 [BP]response to magnesium ionprobableGO:0042221, GO:0050896, GO:0010035, GO:0008150, GO:0010038
GO:0042622 [CC]photoreceptor outer segment membraneprobableGO:0060170, GO:0043229, GO:0071944, GO:0005929, GO:0043227, GO:0043226, GO:0044446, GO:0072372, GO:0031090, GO:0031514, GO:0016020, GO:0031513, GO:0044459, GO:0031253, GO:0005886, GO:0042995, GO:0001750, GO:0043231, GO:0044463, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044441, GO:0044424, GO:0044425, GO:0044422
GO:0006810 [BP]transportprobableGO:0051234, GO:0008150, GO:0051179
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0030425 [CC]dendriteprobableGO:0044464, GO:0005623, GO:0005575, GO:0097458, GO:0043005, GO:0042995
GO:0048666 [BP]neuron developmentprobableGO:0032502, GO:0048699, GO:0048856, GO:0007399, GO:0030182, GO:0009987, GO:0048869, GO:0030154, GO:0048468, GO:0044767, GO:0032501, GO:0044763, GO:0048731, GO:0008150, GO:0022008, GO:0007275, GO:0044699, GO:0044707

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3SHR, chain A
Confidence level:very confident
Coverage over the Query: 111-232
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Template: 3UKN, chain A
Confidence level:very confident
Coverage over the Query: 40-42,53-243
View the alignment between query and template
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Template: 3V5W, chain A
Confidence level:probable
Coverage over the Query: 260-359
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Template: 4H33, chain A
Confidence level:probable
Coverage over the Query: 3-39
View the alignment between query and template
View the model in PyMOL