Psyllid ID: psy9025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHREDIHESHITSE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHcccccEEEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEEccccccEEEEEEEEEEEEEEccEEEEEEccccEEEccccccccccccccEEEEEccEEccccccHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHcccccccccEEEEccccccEEEEEEccEEEEEcccEEEEEEcccccccHHHHHHHcccccccccEEEEEHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHccccccccHHcccccccccccccccEEEcHccHcHcccccc
Coil and Loop (DISEMBL)
hiiyprnneteantwlrkesvpeqvrgdiesgvdedeeyhdsdseKERRERFIQERIRHLAHVFTERAQKIKRildfpptpsssttlssssedENKILNnlplklktdVAINVHIQTLSKVQLFQDCDEALLRELVLKLrpvlylpgdyicrkgevgkeMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAgtnrrtadvrshgfsnlfvlnkddlNEAIEYYPNAQEVLKKKARQLIKENAArervsqpklstmdASSVLldrkgeepkqapkllPIVMQVvpqnsmaskllrcgskslnkrphrrvnrsasadtyfhpkqqrrllhqtptghnnsfecqvtvhrediheshitse
Flexible Loop (DISEMBL)
hiiyprnneteantwlrkesvpeqvrgdiesgvdedeeyhdsdsekerRERFIQERIRHLAHVFTERAQKIkrildfpptpsssttlssssedENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLklrpvlylpgdyICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENaarervsqpklstmdASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLrcgskslnkrphrrvnrsasadtyfhpkQQRRLLHQTPTGHNNSFECQVTVHREDIheshitse
Low Complexity Region (SEG)
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVdedeeyhdsdsekerrerfiqerirHLAHVFTERAQKIKRILDFpptpsssttlssssEDEnkilnnlplklkTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHREDIHESHITSE
Disordered region (IsUnstruct)
***************************************************FIQERIRHLAHVFTERAQKIKRIL*********************ILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVL***********************************************IVMQ****************************************************************************
Disordered Region (DISOPRED)
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLI***********************************************************************************************************************
Disordered Region (DISEMBL)
HIIYPRNNETEANTWLRKESVPEQVRGDIES******************ERFIQERIRHLAHVFTERAQKIKRILDFPP***************NKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA***********TMDASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHRED*********
Disordered Region (DISPRO)
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEE***AP*****V*QVV******SKL*******************************R***HQTPTGHNNSFECQVTVHREDI********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HIIYPRNNETEANTWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHREDIHESHITSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
P55934	682	Cyclic nucleotide-gated c	N/A	N/A	0.465	0.246	0.545	1e-48
Q14028	1251	Cyclic nucleotide-gated c	yes	N/A	0.423	0.122	0.532	3e-47
Q28181	1394	Cyclic nucleotide-gated c	yes	N/A	0.423	0.109	0.532	3e-47
Q9JJZ8	631	Cyclic nucleotide-gated c	yes	N/A	0.468	0.267	0.525	5e-47
Q03041	663	Cyclic nucleotide-gated o	no	N/A	0.470	0.256	0.510	1e-46
Q28718	664	Cyclic nucleotide-gated o	no	N/A	0.415	0.225	0.561	5e-46
Q00195	664	Cyclic nucleotide-gated o	no	N/A	0.434	0.236	0.558	6e-46
Q62398	664	Cyclic nucleotide-gated o	no	N/A	0.434	0.236	0.558	6e-46
Q16280	664	Cyclic nucleotide-gated o	no	N/A	0.479	0.260	0.510	1e-45
Q90805	735	Cyclic nucleotide-gated c	no	N/A	0.445	0.219	0.532	2e-45

>sp|P55934|CNG_ICTPU Cyclic nucleotide-gated cation channel OS=Ictalurus punctatus PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 130/174 (74%), Gaps = 6/174 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE ++L NLP KL+ ++AINVH+ TL KV++FQDC+  LL ELVLKLRP +Y PGDYICR
Sbjct: 417 DEQEVLKNLPDKLRAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPQVYSPGDYICR 476

Query: 153 KGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSH 207
           KG++GKEMYI+K GQ+ VV+  G T  A LT G  FGEIS+L + G+   NRRTA++RS 
Sbjct: 477 KGDIGKEMYIIKEGQLAVVADDGVTQFALLTAGGCFGEISILNIQGSKMGNRRTANIRSI 536

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLI-KENAARERVSQPKLSTMD 260
           G+S+LF L+KDDL EA+  YP+AQ+VL+++ R+++ K+    E V+   L  +D
Sbjct: 537 GYSDLFCLSKDDLMEAVAEYPDAQKVLEERGREILRKQGLLDESVAAGGLGVID 590

This cyclic nucleotide-gated channel is activated equally well by both cAMP and cGMP.
Ictalurus punctatus (taxid: 7998)

>sp|Q14028|CNGB1_HUMAN Cyclic nucleotide-gated cation channel beta-1 OS=Homo sapiens GN=CNGB1 PE=1 SV=2

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 125/156 (80%), Gaps = 3/156 (1%)

Query: 93   DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
            DE++++  LP K++ D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP DY+C+
Sbjct: 932  DESELMVQLPDKMRLDLAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCK 991

Query: 153  KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
            KGE+G+EMYI++ GQVQV+ G   ++VL TL  GSVFGEISLLA+ G NRRTA+V +HGF
Sbjct: 992  KGEIGREMYIIQAGQVQVLGGPDGKSVLVTLKAGSVFGEISLLAVGGGNRRTANVVAHGF 1051

Query: 210  SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN 245
            +NLF+L+K DLNE + +YP +Q++L+KKAR++++ N
Sbjct: 1052 TNLFILDKKDLNEILVHYPESQKLLRKKARRMLRSN 1087

Isoform GARP2 is a high affinity rod photoreceptor phosphodiesterase (PDE6)-binding protein that modulates its catalytic properties: it is a regulator of spontaneous activation of rod PDE6, thereby serving to lower rod photoreceptor 'dark noise' and allowing these sensory cells to operate at the single photon detection limit.

Homo sapiens (taxid: 9606)

>sp|Q28181|CNGB1_BOVIN Cyclic nucleotide-gated cation channel beta-1 OS=Bos taurus GN=CNGB1 PE=1 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 125/156 (80%), Gaps = 3/156 (1%)

Query: 93   DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
            DE++++  LP K++ D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP DY+C+
Sbjct: 1046 DESELMVQLPDKMRLDLAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCK 1105

Query: 153  KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
            KGE+G+EMYI++ GQVQV+ G   ++VL TL  GSVFGEISLLA+ G NRRTA+V +HGF
Sbjct: 1106 KGEIGREMYIIQAGQVQVLGGPDGKSVLVTLKAGSVFGEISLLAVGGGNRRTANVVAHGF 1165

Query: 210  SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN 245
            +NLF+L+K DLNE + +YP +Q++L+KKAR++++ N
Sbjct: 1166 TNLFILDKKDLNEILVHYPESQKLLRKKARRMLRNN 1201

Subunit of cyclic nucleotide-gated (CNG) channels, nonselective cation channels, which play important roles in both visual and olfactory signal transduction. When associated with CNGA1, it is involved in the regulation of ion flow into the rod photoreceptor outer segment (ROS), in response to light-induced alteration of the levels of intracellular cGMP.

Bos taurus (taxid: 9913)

>sp|Q9JJZ8|CNGA3_MOUSE Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=2

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 130/175 (74%), Gaps = 6/175 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE ++L NLP KLK ++AINVH+ TL KV++FQDC+  LL ELVLKLRP ++ PGDYIC+
Sbjct: 393 DEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICK 452

Query: 153 KGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSH 207
           KG++G+EMYI+K G++ VV+  G T    L++GS FGEIS+L + G+   NRRTA++RS 
Sbjct: 453 KGDIGREMYIIKEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSI 512

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ-LIKENAARERVSQPKLSTMDA 261
           G+S+LF L+KDDL EA+  YP+A+  L++K RQ L+K+N   E +   ++ T D 
Sbjct: 513 GYSDLFCLSKDDLMEALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRDV 567

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones (By similarity). Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3.

Mus musculus (taxid: 10090)

>sp|Q03041|CNGA2_BOVIN Cyclic nucleotide-gated olfactory channel OS=Bos taurus GN=CNGA2 PE=1 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 131/182 (71%), Gaps = 12/182 (6%)

Query: 66  ERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQ 125
           E   K+ R  D+  T       +  S DE ++L NLP KL+ ++AINVH+ TL KV++FQ
Sbjct: 404 EMEAKVIRWFDYLWT-------NKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQ 456

Query: 126 DCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS--GETVLATLTEG 183
           DC+  LL ELVLKLRP ++ PGDYICRKG++GKEMYI+K G++ VV+  G T  A L+ G
Sbjct: 457 DCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKLAVVADDGVTQYALLSAG 516

Query: 184 SVFGEISLLALAGT---NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ 240
           S FGEIS+L + G+   NRRTA++RS G+S+LF L+KDDL EA+  YP+A+ VL+++ R+
Sbjct: 517 SCFGEISILNIKGSKMGNRRTANIRSLGYSDLFCLSKDDLMEAVTEYPDAKRVLEERGRE 576

Query: 241 LI 242
           ++
Sbjct: 577 IL 578

Odorant signal transduction is probably mediated by a G-protein coupled cascade using cAMP as second messenger. The olfactory channel can be shown to be activated by cyclic nucleotides which leads to a depolarization of olfactory sensory neurons.

Bos taurus (taxid: 9913)

>sp|Q28718|CNGA2_RABIT Cyclic nucleotide-gated olfactory channel OS=Oryctolagus cuniculus GN=CNGA2 PE=2 SV=1

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 123/155 (79%), Gaps = 5/155 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE ++L NLP KL+ ++AINVH+ TL KV++FQDC+  LL ELVLKLRP ++ PGDYICR
Sbjct: 424 DEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICR 483

Query: 153 KGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSH 207
           KG++GKEMYI+K G++ VV+  G T  A L+ GS FGEIS+L + G+   NRRTA++RS 
Sbjct: 484 KGDIGKEMYIIKEGKLAVVADDGVTQYALLSAGSCFGEISILNIKGSKMGNRRTANIRSL 543

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLI 242
           G+S+LF L+KDDL EA+  YP+A++VL+++ R+++
Sbjct: 544 GYSDLFCLSKDDLMEAVTEYPDAKKVLEERGREIL 578

Odorant signal transduction is probably mediated by a G-protein coupled cascade using cAMP as second messenger. The olfactory channel can be shown to be activated by cyclic nucleotides which leads to a depolarization of olfactory sensory neurons.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q00195|CNGA2_RAT Cyclic nucleotide-gated olfactory channel OS=Rattus norvegicus GN=Cnga2 PE=2 SV=1

 Score =  185 bits (469), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 126/163 (77%), Gaps = 6/163 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE ++L NLP KL+ ++AINVH+ TL KV++FQDC+  LL ELVLKLRP ++ PGDYICR
Sbjct: 426 DEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICR 485

Query: 153 KGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSH 207
           KG++GKEMYI+K G++ VV+  G T  A L+ GS FGEIS+L + G+   NRRTA++RS 
Sbjct: 486 KGDIGKEMYIIKEGKLAVVADDGVTQYALLSAGSCFGEISILNIKGSKMGNRRTANIRSL 545

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ-LIKENAARE 249
           G+S+LF L+KDDL EA+  YP+A++VL+++ R+ L+KE    E
Sbjct: 546 GYSDLFCLSKDDLMEAVTEYPDAKKVLEERGREILMKEGLLDE 588

Odorant signal transduction is probably mediated by a G-protein coupled cascade using cAMP as second messenger. The olfactory channel can be shown to be activated by cyclic nucleotides which leads to a depolarization of olfactory sensory neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q62398|CNGA2_MOUSE Cyclic nucleotide-gated olfactory channel OS=Mus musculus GN=Cnga2 PE=2 SV=2

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 126/163 (77%), Gaps = 6/163 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE ++L NLP KL+ ++AINVH+ TL KV++FQDC+  LL ELVLKLRP ++ PGDYICR
Sbjct: 426 DEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICR 485

Query: 153 KGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSH 207
           KG++GKEMYI+K G++ VV+  G T  A L+ GS FGEIS+L + G+   NRRTA++RS 
Sbjct: 486 KGDIGKEMYIIKEGKLAVVADDGVTQYALLSAGSCFGEISILNIKGSKMGNRRTANIRSL 545

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ-LIKENAARE 249
           G+S+LF L+KDDL EA+  YP+A++VL+++ R+ L+KE    E
Sbjct: 546 GYSDLFCLSKDDLMEAVTEYPDAKKVLEERGREILMKEGLLDE 588

Odorant signal transduction is probably mediated by a G-protein coupled cascade using cAMP as second messenger. The olfactory channel can be shown to be activated by cyclic nucleotides which leads to a depolarization of olfactory sensory neurons.

Mus musculus (taxid: 10090)

>sp|Q16280|CNGA2_HUMAN Cyclic nucleotide-gated olfactory channel OS=Homo sapiens GN=CNGA2 PE=2 SV=2

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 133/186 (71%), Gaps = 13/186 (6%)

Query: 70  KIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDE 129
           K+ R  D+  T       +  + DE +IL NLP KL+ ++AINVH+ TL KV++F DC+ 
Sbjct: 408 KVIRWFDYLWT-------NKKTVDEREILKNLPAKLRAEIAINVHLSTLKKVRIFHDCEA 460

Query: 130 ALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFG 187
            LL ELVLKLRP ++ PGDYICRKG++GKEMYI+K G++ VV+  G T  A L+ GS FG
Sbjct: 461 GLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKLAVVADDGVTQYALLSAGSCFG 520

Query: 188 EISLLALAGT---NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ-LIK 243
           EIS+L + G+   NRRTA++RS G+S+LF L+KDDL EA+  YP+A++VL+++ R+ L+K
Sbjct: 521 EISILNIKGSKMGNRRTANIRSLGYSDLFCLSKDDLMEAVTEYPDAKKVLEERGREILMK 580

Query: 244 ENAARE 249
           E    E
Sbjct: 581 EGLLDE 586

Odorant signal transduction is probably mediated by a G-protein coupled cascade using cAMP as second messenger. The olfactory channel can be shown to be activated by cyclic nucleotides which leads to a depolarization of olfactory sensory neurons.

Homo sapiens (taxid: 9606)

>sp|Q90805|CNG1_CHICK Cyclic nucleotide-gated channel cone photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 127/167 (76%), Gaps = 6/167 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE ++L NLP KLK ++AINVH+ TL KV++FQDC+  LL ELVLKL+P ++ PGDYIC+
Sbjct: 494 DEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLIELVLKLKPTVFSPGDYICK 553

Query: 153 KGEVGKEMYIVKTGQVQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSH 207
           KG++G+EMYI+K G++ VV+  G T    L++GS FGEIS+L + G+   NRRTA++RS 
Sbjct: 554 KGDIGREMYIIKEGKLAVVADDGITQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSI 613

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ-LIKENAARERVSQ 253
           G+S+LF L+KDDL EA+  YP A++ L++K RQ L+K+N   E  ++
Sbjct: 614 GYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEEAAK 660

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
328715146	596	PREDICTED: cyclic nucleotide-gated catio	0.434	0.263	0.825	8e-73
312373940	453	hypothetical protein AND_16790 [Anophele	0.620	0.494	0.613	1e-69
170040313	969	cyclic nucleotide-gated cation channel 4	0.587	0.218	0.643	3e-69
158297650	926	AGAP011459-PA [Anopheles gambiae str. PE	0.578	0.225	0.648	5e-69
170072152	609	cyclic nucleotide-gated cation channel b	0.587	0.348	0.643	9e-69
157129904	909	cyclic-nucleotide-gated cation channel [	0.587	0.233	0.639	4e-68
195431778	1056	GK15660 [Drosophila willistoni] gi|19415	0.623	0.213	0.599	2e-67
195486384	1039	GE13682 [Drosophila yakuba] gi|194177587	0.631	0.219	0.587	3e-67
194882000	1038	GG20750 [Drosophila erecta] gi|190658288	0.631	0.219	0.587	4e-67
16768108	515	GH17414p [Drosophila melanogaster]	0.631	0.442	0.583	6e-67

>gi|328715146|ref|XP_001949293.2| PREDICTED: cyclic nucleotide-gated cation channel beta-1-like [Acyrthosiphon pisum]

 Score =  280 bits (716), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/160 (82%), Positives = 153/160 (95%), Gaps = 3/160 (1%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DEN+IL++LP K+KTDVAINVH++TL+KVQLF+DCD+ALLRELVLKLRP+LYLPGDYICR
Sbjct: 413 DENRILDSLPHKMKTDVAINVHMKTLNKVQLFKDCDKALLRELVLKLRPILYLPGDYICR 472

Query: 153 KGEVGKEMYIVKTGQVQVVSGET---VLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           KGEVGKEMYIVKTGQVQVV GE    VLATLTEGSVFGEISLL+L GTNRRTADVRSHGF
Sbjct: 473 KGEVGKEMYIVKTGQVQVVGGENDDEVLATLTEGSVFGEISLLSLCGTNRRTADVRSHGF 532

Query: 210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARE 249
           SN+FVL+K+DLNEAI++YPNAQE+LK+KAR+LI++NAARE
Sbjct: 533 SNIFVLSKEDLNEAIKFYPNAQEILKRKARELIQQNAARE 572

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373940|gb|EFR21605.1| hypothetical protein AND_16790 [Anopheles darlingi]

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/233 (61%), Positives = 178/233 (76%), Gaps = 9/233 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE  I++ LP  +KTD+AI+VHIQTLSKVQLF DC+EALLRELVLKLR V +LPGD++CR
Sbjct: 132 DETHIMDALPANVKTDIAISVHIQTLSKVQLFADCEEALLRELVLKLRSVTFLPGDFVCR 191

Query: 153 KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGT--NRRTADVRSH 207
           KGEVGKEMYIVKTGQVQV+ G   + VLATL EGSVFGEISLLA+ G   NRRTADVRS 
Sbjct: 192 KGEVGKEMYIVKTGQVQVMGGARNDVVLATLYEGSVFGEISLLAINGAEGNRRTADVRSK 251

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERV-SQPKLSTMDASSVLL 266
           GFSNLFVL+K DLNEAI YYPNAQ +LKK+A+ L+++NAARE+  SQ  + T  + + ++
Sbjct: 252 GFSNLFVLSKSDLNEAIVYYPNAQAILKKRAKSLMRKNAAREKAESQQSIDTKCSDADVV 311

Query: 267 DRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASAD 319
            R  ++P  +PKLL  V+Q +P+ S A +LL  G KS++  P R  +  A  D
Sbjct: 312 IRNPQDP-TSPKLLKTVIQALPRESAAVQLLMQGFKSID--PPREEHSEAKVD 361

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040313|ref|XP_001847948.1| cyclic nucleotide-gated cation channel 4 [Culex quinquefasciatus] gi|167863875|gb|EDS27258.1| cyclic nucleotide-gated cation channel 4 [Culex quinquefasciatus]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 170/219 (77%), Gaps = 7/219 (3%)

Query: 91  SEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYI 150
           S DE  I++ LP  LKTD+AI+VHIQTLSKVQLF DC+EALLRELVLKLR V +LPGDY+
Sbjct: 664 SLDETHIMDALPANLKTDIAISVHIQTLSKVQLFADCEEALLRELVLKLRSVTFLPGDYV 723

Query: 151 CRKGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGT--NRRTADVR 205
           CRKGEVGKEMYIVKTGQVQV+ G   + VLATL EGSVFGEISLLA+ G   NRRTADVR
Sbjct: 724 CRKGEVGKEMYIVKTGQVQVMGGPRSDVVLATLYEGSVFGEISLLAINGAEGNRRTADVR 783

Query: 206 SHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERV-SQPKLSTMDASSV 264
           S GFSNLFVL+K DLNEAI YYPNAQ +LKK+A+ L+++NAARE+  SQ  ++T DA + 
Sbjct: 784 SKGFSNLFVLSKSDLNEAIVYYPNAQAILKKRAKSLMRKNAAREKAESQQSINTNDADTD 843

Query: 265 LLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKS 303
           ++    +    +PKLL  V+Q +P+ S A +LL  G K 
Sbjct: 844 VVISNPDHT-TSPKLLKTVIQALPRESAAVQLLTQGFKG 881

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297650|ref|XP_554755.3| AGAP011459-PA [Anopheles gambiae str. PEST] gi|157014678|gb|EAL39479.3| AGAP011459-PA [Anopheles gambiae str. PEST]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 140/216 (64%), Positives = 168/216 (77%), Gaps = 7/216 (3%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE  I++ LP  LKTD+AI+VHIQTLSKVQLF DC+EALLRELVLKLR V +LPGD++CR
Sbjct: 623 DETHIMDALPANLKTDIAISVHIQTLSKVQLFADCEEALLRELVLKLRSVTFLPGDFVCR 682

Query: 153 KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGT--NRRTADVRSH 207
           KGEVGKEMYIVKTGQVQV+ G   + VLATL EGSVFGEISLLA+ G   NRRTADVRS 
Sbjct: 683 KGEVGKEMYIVKTGQVQVMGGPRNDVVLATLYEGSVFGEISLLAINGAEGNRRTADVRSK 742

Query: 208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERV-SQPKLSTMDASSVLL 266
           GFSNLFVL+K DLNEAI YYPNAQ +LKK+A+ L+++NAARE+  SQ  + T  +   ++
Sbjct: 743 GFSNLFVLSKSDLNEAIVYYPNAQAILKKRAKSLMRKNAAREKAESQQSIDTKGSEVDVV 802

Query: 267 DRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSK 302
            R   +P  +PKLL  V+Q +PQ S A +LL  G K
Sbjct: 803 IRNPPDPA-SPKLLKTVIQALPQESAAVQLLMQGFK 837

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170072152|ref|XP_001870106.1| cyclic nucleotide-gated cation channel beta 3 [Culex quinquefasciatus] gi|167868267|gb|EDS31650.1| cyclic nucleotide-gated cation channel beta 3 [Culex quinquefasciatus]

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 170/219 (77%), Gaps = 7/219 (3%)

Query: 91  SEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYI 150
           S DE  I++ LP  LKTD+AI+VHIQTLSKVQLF DC+EALLRELVLKLR V +LPGDY+
Sbjct: 304 SLDETHIMDALPANLKTDIAISVHIQTLSKVQLFADCEEALLRELVLKLRSVTFLPGDYV 363

Query: 151 CRKGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGT--NRRTADVR 205
           CRKGEVGKEMYIVKTGQVQV+ G   + VLATL EGSVFGEISLLA+ G   NRRTADVR
Sbjct: 364 CRKGEVGKEMYIVKTGQVQVMGGPRSDVVLATLYEGSVFGEISLLAINGAEGNRRTADVR 423

Query: 206 SHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERV-SQPKLSTMDASSV 264
           S GFSNLFVL+K DLNEAI YYPNAQ +LKK+A+ L+++NAARE+  SQ  ++T DA + 
Sbjct: 424 SKGFSNLFVLSKSDLNEAIVYYPNAQAILKKRAKSLMRKNAAREKAESQQSINTNDADTD 483

Query: 265 LLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKS 303
           ++    +    +PKLL  V+Q +P+ S A +LL  G K 
Sbjct: 484 VVISNPDH-STSPKLLKTVIQALPRESAAVQLLTQGFKG 521

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129904|ref|XP_001661810.1| cyclic-nucleotide-gated cation channel [Aedes aegypti] gi|108872049|gb|EAT36274.1| AAEL011638-PA, partial [Aedes aegypti]

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 168/219 (76%), Gaps = 7/219 (3%)

Query: 91  SEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYI 150
           S DE  I++ LP  LKTD+AI+VHIQTLSKVQLF DC+EALLRELVLKLR V +LPGDY+
Sbjct: 606 SLDETHIMDALPANLKTDIAISVHIQTLSKVQLFADCEEALLRELVLKLRSVTFLPGDYV 665

Query: 151 CRKGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGT--NRRTADVR 205
           CRKGEVGKEMYIVKTGQV V+ G   + VLATL EGSVFGEISLLA+ G   NRRTADVR
Sbjct: 666 CRKGEVGKEMYIVKTGQVLVMGGPRNDVVLATLYEGSVFGEISLLAINGAEGNRRTADVR 725

Query: 206 SHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERV-SQPKLSTMDASSV 264
           S GFSNLFVL+K DLNEAI YYPNAQ +LKK+A+ L+++NAARE+  SQ  +   DA + 
Sbjct: 726 SKGFSNLFVLSKSDLNEAIVYYPNAQAILKKRAKSLMRKNAAREKAESQQSIDANDADTD 785

Query: 265 LLDRKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKS 303
           ++    +  K +PKLL  V+Q +P+ S A +LL  G K 
Sbjct: 786 VVISNPDHNK-SPKLLKTVIQALPRESAAVQLLTQGFKG 823

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431778|ref|XP_002063905.1| GK15660 [Drosophila willistoni] gi|194159990|gb|EDW74891.1| GK15660 [Drosophila willistoni]

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 175/237 (73%), Gaps = 12/237 (5%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE+ IL+ LP+ LKTD+AI+VHIQTLSKVQLF DC+EALLR+LVLKLR V +LPGD++C+
Sbjct: 752 DESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFLPGDFVCQ 811

Query: 153 KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           KGEVG+EMYIVK GQVQV+ G   + VLATLTEGSVFGEISLL + G +RRTADVRS G+
Sbjct: 812 KGEVGREMYIVKLGQVQVMGGPNSDVVLATLTEGSVFGEISLLGINGADRRTADVRSKGY 871

Query: 210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA--RERVSQPKLSTMDASSVLLD 267
           SNLFVL+K DLNE I YYPNAQ +LKK+ARQL+++NAA  RE   +   S + A  V+ +
Sbjct: 872 SNLFVLSKSDLNEVIAYYPNAQAILKKRARQLMRKNAAREREEERERVRSALQADVVIGN 931

Query: 268 RKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHP 324
            K   P+ APKLL  V+Q +P  S A  L+  GSK L     RR  +S   +T   P
Sbjct: 932 PK--TPESAPKLLQTVIQALPYESPAVVLITRGSKRL-----RRKRQSLQMETIVEP 981

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195486384|ref|XP_002091486.1| GE13682 [Drosophila yakuba] gi|194177587|gb|EDW91198.1| GE13682 [Drosophila yakuba]

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/240 (58%), Positives = 175/240 (72%), Gaps = 12/240 (5%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE+ IL+ LP+ LKTD+AI+VHIQTLSKVQLF DC+EALLR+LVLKLR V +LPGD++CR
Sbjct: 744 DESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFLPGDFVCR 803

Query: 153 KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           KGEVG+EMYIVK GQVQV+ G   + VLATLTEGSVFGEISLL + G +RRTADVRS G+
Sbjct: 804 KGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGINGADRRTADVRSKGY 863

Query: 210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN--AARERVSQPKLSTMDASSVLLD 267
           SNLFVL+K DLNE I YYPNAQ +LKK+ARQL+++N    RE   +   S + A  V+ +
Sbjct: 864 SNLFVLSKSDLNEVIAYYPNAQAILKKRARQLMRKNAAREREEERERARSALQADVVIGN 923

Query: 268 RKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQ 327
            K   P+ APKLL  V+Q +P  S A  L+  GSK +     RR  +S   +T   PK +
Sbjct: 924 PK--TPETAPKLLQTVIQALPFESPAVVLITRGSKRM-----RRKRQSVQMETIVEPKME 976

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882000|ref|XP_001975101.1| GG20750 [Drosophila erecta] gi|190658288|gb|EDV55501.1| GG20750 [Drosophila erecta]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/240 (58%), Positives = 175/240 (72%), Gaps = 12/240 (5%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE+ IL+ LP+ LKTD+AI+VHIQTLSKVQLF DC+EALLR+LVLKLR V +LPGD++CR
Sbjct: 743 DESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFLPGDFVCR 802

Query: 153 KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           KGEVG+EMYIVK GQVQV+ G   + VLATLTEGSVFGEISLL + G +RRTADVRS G+
Sbjct: 803 KGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGINGADRRTADVRSKGY 862

Query: 210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN--AARERVSQPKLSTMDASSVLLD 267
           SNLFVL+K DLNE I YYPNAQ +LKK+ARQL+++N    RE   +   S + A  V+ +
Sbjct: 863 SNLFVLSKSDLNEVIAYYPNAQAILKKRARQLMRKNAAREREEERERARSALQADVVIGN 922

Query: 268 RKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQ 327
            K   P+ APKLL  V+Q +P  S A  L+  GSK +     RR  +S   +T   PK +
Sbjct: 923 PK--TPETAPKLLQTVIQALPFESPAVVLITRGSKRM-----RRKRQSVQMETIVEPKME 975

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16768108|gb|AAL28273.1| GH17414p [Drosophila melanogaster]

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 140/240 (58%), Positives = 174/240 (72%), Gaps = 12/240 (5%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           DE+ IL+ LP+ LKTD+AI+VHIQTLSKVQLF DC+EALLR+LVLKLR V +LPGD++CR
Sbjct: 220 DESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFLPGDFVCR 279

Query: 153 KGEVGKEMYIVKTGQVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           KGEVG+EMYIVK GQVQV+ G   + VLATLTEGSVFGEISLL + G +RRTADVRS G+
Sbjct: 280 KGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGINGADRRTADVRSKGY 339

Query: 210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN--AARERVSQPKLSTMDASSVLLD 267
           SNLFVL+K DLNE I YYP AQ +LKK+ARQL+++N    RE   +   S + A  V+ +
Sbjct: 340 SNLFVLSKSDLNEVIAYYPTAQAILKKRARQLMRKNAAREREEERERARSALQADVVIGN 399

Query: 268 RKGEEPKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQ 327
            K   P+ APKLL  V+Q +P  S A  L+  GSK +     RR  +S   +T   PK +
Sbjct: 400 PK--TPETAPKLLQTVIQALPFESPAVVLITRGSKRM-----RRKRQSVQMETIVEPKME 452

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
FB|FBgn0034656	1040	CG17922 [Drosophila melanogast	0.592	0.205	0.597	4e-62
WB|WBGene00006525	800	tax-2 [Caenorhabditis elegans	0.498	0.225	0.534	1.7e-47
UNIPROTKB|F1MTS7	1386	CNGB1 "Cyclic nucleotide-gated	0.382	0.099	0.553	6.2e-41
UNIPROTKB|Q14028	1251	CNGB1 "Cyclic nucleotide-gated	0.606	0.175	0.409	9.4e-41
UNIPROTKB|F1LQB8	1214	Cngb1 "Protein Cngb1" [Rattus	0.520	0.154	0.455	2.2e-40
UNIPROTKB|Q28181	1394	CNGB1 "Cyclic nucleotide-gated	0.382	0.098	0.553	2e-39
UNIPROTKB|F1P1T1	713	F1P1T1 "Uncharacterized protei	0.382	0.193	0.553	2.2e-39
MGI|MGI:1341818	631	Cnga3 "cyclic nucleotide gated	0.423	0.242	0.522	4.2e-39
UNIPROTKB|F1NAI9	609	CNGA2 "Uncharacterized protein	0.437	0.259	0.520	8.2e-39
UNIPROTKB|I3LSH4	485	LOC100739165 "Uncharacterized	0.404	0.301	0.532	1.3e-38

FB|FBgn0034656 CG17922 [Drosophila melanogaster (taxid:7227)]

 Score = 626 (225.4 bits), Expect = 4.0e-62, Sum P(2) = 4.0e-62
 Identities = 135/226 (59%), Positives = 167/226 (73%)

Query:   107 TDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
             TD+AI+VHIQTLSKVQLF DC+EALLR+LVLKLR V +LPGD++CRKGEVG+EMYIVK G
Sbjct:   759 TDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFLPGDFVCRKGEVGREMYIVKLG 818

Query:   167 QVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEA 223
             QVQV+ G   + VLATLTEGSVFGEISLL + G +RRTADVRS G+SNLFVL+K DLNE 
Sbjct:   819 QVQVMGGPSSDVVLATLTEGSVFGEISLLGINGADRRTADVRSKGYSNLFVLSKSDLNEV 878

Query:   224 IEYYPNAQEVLKKKARQLIKENAARERVSQPKL--STMDASSVLLDRKGEEPKQAPKLLP 281
             I YYP AQ +LKK+ARQL+++NAARER  + +   S + A  V+ + K   P+ APKLL 
Sbjct:   879 IAYYPTAQAILKKRARQLMRKNAAREREEERERARSALQADVVIGNPK--TPETAPKLLQ 936

Query:   282 IVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQQ 327
              V+Q +P  S A  L+  GSK +     RR  +S   +T   PK +
Sbjct:   937 TVIQALPFESPAVVLITRGSKRM-----RRKRQSVQMETIVEPKME 977

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=ISS

GO:0017071 "intracellular cyclic nucleotide activated cation channel complex" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

WB|WBGene00006525 tax-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 502 (181.8 bits), Expect = 1.7e-47, P = 1.7e-47
 Identities = 100/187 (53%), Positives = 132/187 (70%)

Query:   107 TDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
             TD+A++VH  TLSKVQLFQDCD ALLR+LVLKLRPV++LPGD IC KG+VGKEMYI+  G
Sbjct:   522 TDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDVGKEMYIINQG 581

Query:   167 QVQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEA 223
              +QVV G   E + A L +G+VFGEISLLA+ G NRRTA +R+ G+  LFVL K+DLN+ 
Sbjct:   582 ILQVVGGDHNEKIFAELAQGAVFGEISLLAIGGNNRRTASIRAKGYCTLFVLAKEDLNDV 641

Query:   224 IEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIV 283
             I YYP AQ +L++KA  ++K     ++ S  K   + A + L DR    P+Q PKL+ ++
Sbjct:   642 IRYYPQAQTILRRKAAAMLKN----DKKSDEKTEKIKAQAELEDRCKINPRQVPKLITLI 697

Query:   284 MQVVPQN 290
               +   N
Sbjct:   698 ANMTEMN 704

GO:0016021 "integral to membrane" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0055093 "response to hyperoxia" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0030516 "regulation of axon extension" evidence=IMP

GO:0009454 "aerotaxis" evidence=IMP

UNIPROTKB|F1MTS7 CNGB1 "Cyclic nucleotide-gated cation channel beta-1" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 6.2e-41, Sum P(3) = 6.2e-41
 Identities = 78/141 (55%), Positives = 114/141 (80%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP DY+C+KGE+G+EMYI++ GQ
Sbjct:  1052 DLAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQ 1111

Query:   168 VQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
             VQV+ G   ++VL TL  GSVFGEISLLA+ G NRRTA+V +HGF+NLF+L+K DLNE +
Sbjct:  1112 VQVLGGPDGKSVLVTLKAGSVFGEISLLAVGGGNRRTANVVAHGFTNLFILDKKDLNEIL 1171

Query:   225 EYYPNAQEVLKKKARQLIKEN 245
              +YP +Q++L+KKAR++++ N
Sbjct:  1172 VHYPESQKLLRKKARRMLRNN 1192

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0043855 "cyclic nucleotide-gated ion channel activity" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

UNIPROTKB|Q14028 CNGB1 "Cyclic nucleotide-gated cation channel beta-1" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 9.4e-41, Sum P(2) = 9.4e-41
 Identities = 95/232 (40%), Positives = 151/232 (65%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP DY+C+KGE+G+EMYI++ GQ
Sbjct:   947 DLAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQ 1006

Query:   168 VQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
             VQV+ G   ++VL TL  GSVFGEISLLA+ G NRRTA+V +HGF+NLF+L+K DLNE +
Sbjct:  1007 VQVLGGPDGKSVLVTLKAGSVFGEISLLAVGGGNRRTANVVAHGFTNLFILDKKDLNEIL 1066

Query:   225 EYYPNAQEVLKKKARQLIKEN-AARERVS----QPKLST---MDASSVLLDRKGEEPKQA 276
              +YP +Q++L+KKAR++++ N   +E  S     P+  T    +A+  +  + G +  + 
Sbjct:  1067 VHYPESQKLLRKKARRMLRSNNKPKEEKSVLILPPRAGTPKLFNAALAMTGKMGGKGAKG 1126

Query:   277 PKL--LPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNRSASADTYFHPKQ 326
              KL  L   ++ +     A+K      ++ + +  +    SA+ D + HPK+
Sbjct:  1127 GKLAHLRARLKELAALEAAAKQQELVEQAKSSQDVKGEEGSAAPDQHTHPKE 1178

GO:0030552 "cAMP binding" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0005222 "intracellular cAMP activated cation channel activity" evidence=NAS

GO:0017071 "intracellular cyclic nucleotide activated cation channel complex" evidence=NAS

GO:0006810 "transport" evidence=TAS

GO:0007601 "visual perception" evidence=TAS

GO:0015276 "ligand-gated ion channel activity" evidence=TAS

UNIPROTKB|F1LQB8 Cngb1 "Protein Cngb1" [Rattus norvegicus (taxid:10116)]

 Score = 433 (157.5 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 92/202 (45%), Positives = 137/202 (67%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP DY+C+KGE+G+EMYI++ GQ
Sbjct:   918 DLAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQ 977

Query:   168 VQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
             VQV+ G   + VL TL  GSVFGEISLLA+ G NRRTA+V +HGF+NLF+L+K DLNE +
Sbjct:   978 VQVLGGPDGKAVLVTLKAGSVFGEISLLAVGGGNRRTANVVAHGFTNLFILDKKDLNEIL 1037

Query:   225 EYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQAPKLLPIVM 284
              +YP +Q++L+KKAR++++ N      ++PK    + S ++L  +   PK     L    
Sbjct:  1038 VHYPESQKLLRKKARRMLRNN------NKPK---EEKSVLILPPRAGTPKLFNAALAAAG 1088

Query:   285 QVVPQNSMASKL--LRCGSKSL 304
             ++ P+ +   KL  LR   K L
Sbjct:  1089 KMGPRGAKGGKLAHLRARLKEL 1110

GO:0007602 "phototransduction" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0043855 "cyclic nucleotide-gated ion channel activity" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

UNIPROTKB|Q28181 CNGB1 "Cyclic nucleotide-gated cation channel beta-1" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
 Identities = 78/141 (55%), Positives = 114/141 (80%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP DY+C+KGE+G+EMYI++ GQ
Sbjct:  1061 DLAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDYVCKKGEIGREMYIIQAGQ 1120

Query:   168 VQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
             VQV+ G   ++VL TL  GSVFGEISLLA+ G NRRTA+V +HGF+NLF+L+K DLNE +
Sbjct:  1121 VQVLGGPDGKSVLVTLKAGSVFGEISLLAVGGGNRRTANVVAHGFTNLFILDKKDLNEIL 1180

Query:   225 EYYPNAQEVLKKKARQLIKEN 245
              +YP +Q++L+KKAR++++ N
Sbjct:  1181 VHYPESQKLLRKKARRMLRNN 1201

GO:0050896 "response to stimulus" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

UNIPROTKB|F1P1T1 F1P1T1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 426 (155.0 bits), Expect = 2.2e-39, P = 2.2e-39
 Identities = 78/141 (55%), Positives = 113/141 (80%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             D+AI+V+   +SKV LFQ CD  ++ +++ +LR V+YLP D++C+KGE+G+EMYI++ GQ
Sbjct:   406 DIAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDFVCKKGEIGREMYIIQAGQ 465

Query:   168 VQVVSG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
             VQV+ G   +TVL TL  GSVFGEISLLA  G NRRTA+V +HGF+NLF+L+K DLNE +
Sbjct:   466 VQVLGGPDGKTVLVTLKAGSVFGEISLLAAGGGNRRTANVVAHGFANLFILDKKDLNEIL 525

Query:   225 EYYPNAQEVLKKKARQLIKEN 245
              +YP +Q++L+KKA++++K N
Sbjct:   526 VHYPESQKLLRKKAKKMLKSN 546

GO:0007602 "phototransduction" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0043855 "cyclic nucleotide-gated ion channel activity" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

MGI|MGI:1341818 Cnga3 "cyclic nucleotide gated channel alpha 3" [Mus musculus (taxid:10090)]

 Score = 420 (152.9 bits), Expect = 4.2e-39, P = 4.2e-39
 Identities = 83/159 (52%), Positives = 119/159 (74%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             ++AINVH+ TL KV++FQDC+  LL ELVLKLRP ++ PGDYIC+KG++G+EMYI+K G+
Sbjct:   408 EIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGREMYIIKEGK 467

Query:   168 VQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSHGFSNLFVLNKDDLNE 222
             + VV+  G T    L++GS FGEIS+L + G+   NRRTA++RS G+S+LF L+KDDL E
Sbjct:   468 LAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLME 527

Query:   223 AIEYYPNAQEVLKKKARQ-LIKENAARERVSQPKLSTMD 260
             A+  YP+A+  L++K RQ L+K+N   E +   ++ T D
Sbjct:   528 ALTEYPDAKRALEEKGRQILMKDNLIDEDLVAARVDTRD 566

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=ISO;IDA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IPI

GO:0005223 "intracellular cGMP activated cation channel activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IPI

GO:0007601 "visual perception" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0030553 "cGMP binding" evidence=ISO

GO:0032026 "response to magnesium ion" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO;IPI

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0046549 "retinal cone cell development" evidence=IMP

GO:0050896 "response to stimulus" evidence=IEA

GO:0051591 "response to cAMP" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NAI9 CNGA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 416 (151.5 bits), Expect = 8.2e-39, P = 8.2e-39
 Identities = 88/169 (52%), Positives = 123/169 (72%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             ++AINVH++TL KV++FQDC+  LL ELVLKLRP ++ PGDYICRKG++GKEMYI+K G+
Sbjct:   385 EIAINVHLETLKKVRIFQDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGK 444

Query:   168 VQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSHGFSNLFVLNKDDLNE 222
             + VV+  G T  A LT G  FGEIS+L + G+   NRRTA++RS G+S+LF L+K+DL E
Sbjct:   445 LAVVADDGTTQYALLTAGGCFGEISILNIKGSKMGNRRTANIRSLGYSDLFCLSKEDLME 504

Query:   223 AIEYYPNAQEVLKKKARQ-LIKENAARERVSQPKLSTMDASSV--LLDR 268
              +  YP+A++VL+++ R+ LIKE    E   +    +M+  SV   LDR
Sbjct:   505 VVTEYPDAKKVLEERGREILIKEGLLDESAEE---ESMEGKSVEEKLDR 550

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

UNIPROTKB|I3LSH4 LOC100739165 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/152 (53%), Positives = 117/152 (76%)

Query:   108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQ 167
             ++AINVH+ TL KV++FQDC+  LL ELVLKLRP ++ PGDYIC+KG++G+EMYI+K G+
Sbjct:   243 EIAINVHLDTLRKVRIFQDCEAGLLVELVLKLRPAVFSPGDYICKKGDIGREMYIIKEGK 302

Query:   168 VQVVS--GETVLATLTEGSVFGEISLLALAGT---NRRTADVRSHGFSNLFVLNKDDLNE 222
             + VV+  G T    L++GS FGEIS+L + G+   NRRTA++RS G+S+LF L+KDDL E
Sbjct:   303 LAVVAEDGITQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLME 362

Query:   223 AIEYYPNAQEVLKKKARQ-LIKENAARERVSQ 253
             A+  YP A++ L++K RQ L+K+N   E +++
Sbjct:   363 ALTEYPEAKKALEEKGRQILMKDNLIDEELAK 394

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28181	CNGB1_BOVIN	No assigned EC number	0.5320	0.4238	0.1097	yes	N/A
Q9JJZ8	CNGA3_MOUSE	No assigned EC number	0.5257	0.4681	0.2678	yes	N/A
Q14028	CNGB1_HUMAN	No assigned EC number	0.5320	0.4238	0.1223	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	361
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	8e-25
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	7e-24
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	1e-15
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	7e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-09

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 97.0 bits (242), Expect = 8e-25
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 123 LFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVL 177
           LF   D+  L EL   L    +  G+ I R+G+    +YIV +G V+V        E ++
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 178 ATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVL 234
             L  G +FGE++LL   G   R+A VR+   S L VL + D    ++ YP     L
Sbjct: 61  GFLGPGDLFGELALL---GNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 94.8 bits (236), Expect = 7e-24
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 123 LFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----GETVL 177
           LF++ D   LREL   L PV Y  G+ I R+G+VG   YI+ +G+V+V        E ++
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 178 ATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ 231
            TL  G  FGE++LL  +     +A   +   + L  ++  D  + +   P   
Sbjct: 61  GTLGPGDFFGELALLTNSRR-AASAAAVALELATLLRIDFRDFLQLLPELPQLL 113

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 141 PVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----GETVLATLTEGSVFGEISLLALA 195
              +  G+ I R+G+    +YIV +G+V+V        E +LA L  G  FGE++LL   
Sbjct: 1   LRSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALL--- 57

Query: 196 GTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           G   R+A V +   S L V+ ++D  E +E  P
Sbjct: 58  GGEPRSATVVALTDSELLVIPREDFLELLEQDP 90

Length = 91

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 117 TLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----- 171
            L +  L       LL  L LKL       G+ +  +GE    +YI+ +G V++      
Sbjct: 1   ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 172 SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ 231
             E +L  L  G  FGE++LL   G + R+A   +     +  + + D  E +   P   
Sbjct: 61  GREIILGFLGPGDFFGELALL---GGDPRSASAVALTDVEVLEIPRKDFLELLAESPKL- 116

Query: 232 EVLKKKARQLIKENAARERVSQPKLSTM 259
                 A  L++  A R R +  +LS +
Sbjct: 117 ------ALALLRLLARRLRQALERLSLL 138

Length = 214

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 20/200 (10%)

Query: 91  SEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYI 150
           S ++ ++++ LP  +   +  ++ +  + KV LF+     +L  LV K++     P + +
Sbjct: 349 SLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDV 408

Query: 151 CRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRS 206
             + E   ++YIV +G+V+++      E V+ TL  G +FGE+  L       ++   R+
Sbjct: 409 IMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALC---CRPQSFTFRT 465

Query: 207 HGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLL 266
              S L  L    L EA++       V+ K   Q              +L  ++   +L 
Sbjct: 466 KTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ-----------HHKELHDLNVGDLLG 514

Query: 267 DRKGE--EPKQAPKLLPIVM 284
           D  GE  +P  A  LL +  
Sbjct: 515 DNGGEHDDPNMASNLLTVAS 534

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG0614|consensus	732		100.0
KOG0500|consensus	536		100.0
KOG0498|consensus	727		100.0
KOG0499|consensus	815		99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.97
KOG0501|consensus	971		99.86
COG2905	610	Predicted signal-transduction protein containing c	99.86
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.76
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.68
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.65
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.63
KOG1113|consensus	368		99.62
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.61
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.6
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.6
KOG0614|consensus	732		99.57
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.57
KOG1113|consensus	368		99.48
PLN02868	413	acyl-CoA thioesterase family protein	99.46
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.46
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.45
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.37
KOG0616|consensus	355		98.81
KOG2968|consensus	1158		98.69
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	98.41
KOG2968|consensus	1158		98.13
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	98.08
KOG0592|consensus	604		97.83
KOG0605|consensus	550		97.64
KOG0598|consensus	357		97.62
KOG0610|consensus	459		97.25
KOG3542|consensus	1283		97.25
KOG0694|consensus	694		96.88
KOG0575|consensus	592		96.39
KOG3542|consensus	1283		96.03
KOG0612|consensus	1317		96.02
KOG0608|consensus	1034		93.25
KOG0690|consensus	516		92.53
KOG0615|consensus	475		92.22
KOG0695|consensus	593		91.51
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	91.22
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	90.5
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	89.32
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	88.12
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	87.67
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	87.58
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	87.34
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	87.28
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	86.84
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	86.77
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	84.73
PTZ00263	329	protein kinase A catalytic subunit; Provisional	83.64
KOG0585|consensus	576		83.06
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	82.89
PRK13290	125	ectC L-ectoine synthase; Reviewed	82.51
KOG0595|consensus	429		82.31
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	82.11
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	82.1
KOG0580|consensus	281		80.65
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	80.57

>KOG0614|consensus

Probab=100.00  E-value=3.6e-40  Score=304.62  Aligned_cols=264  Identities=20%  Similarity=0.245  Sum_probs=213.0

Q ss_pred             CCCcccHHHHHhhCCHhHHHH------------------------HHHHHHHHHhccCcccccCCHHHHHHHHHhcceEE
Q psy9025          88 SSSSEDENKILNNLPLKLKTD------------------------VAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVL  143 (361)
Q Consensus        88 ~~~~~~e~~ll~~lp~~Lr~~------------------------i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~  143 (361)
                      .+..++|.++|.+++...--+                        ...+.+.+||+++|+|.+++++.+.++++.++..+
T Consensus       220 ~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~  299 (732)
T KOG0614|consen  220 AGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEY  299 (732)
T ss_pred             CchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence            345678889999999665111                        12335789999999999999999999999999999


Q ss_pred             eCCCCEEEeCCCCCCeEEEEEeeEEEEE------eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecce-EEEEEEe
Q psy9025         144 YLPGDYICRKGEVGKEMYIVKTGQVQVV------SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF-SNLFVLN  216 (361)
Q Consensus       144 ~~~ge~I~~~G~~~~~ly~I~~G~v~v~------~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~-~~~~~l~  216 (361)
                      |..|++|+++|+.++.+|+|.+|.|.+.      +.+..++.+..||+|||.+|+.   ...|+++++|..+ ++|+.|+
T Consensus       300 Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~---edvRtAniia~~~gv~cl~lD  376 (732)
T KOG0614|consen  300 YDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLG---EDVRTANIIAQAPGVECLTLD  376 (732)
T ss_pred             hcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhc---cCccchhhhccCCCceEEEec
Confidence            9999999999999999999999999998      2347789999999999999998   8999999999998 9999999


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhhhhcCCccccccccccccccCCCCCCC-----------CCcchhHH-H
Q psy9025         217 KDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVLLDRKGEEPKQ-----------APKLLPIV-M  284 (361)
Q Consensus       217 ~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~l~~~-~  284 (361)
                      ++.|..+++...++.+.-.....++... ....+.........+.++....+.|+++.+           ..+++|.+ |
T Consensus       377 resF~~liG~l~~l~ek~~~D~~r~A~~-~~~~~~~~e~a~v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK  455 (732)
T KOG0614|consen  377 RESFKKLIGDLEELKEKDYGDEERRASV-VIKEDFAEEFAQVKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKK  455 (732)
T ss_pred             HHHHHHhcccHHHhhhhhccchhhhhhh-HHHHHHHhhhcccchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhH
Confidence            9999999998888875333333333111 101111112233345566666666665533           24678999 8


Q ss_pred             hhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCC-CCCC----ccceeeh
Q psy9025         285 QVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTG-HNNS----FECQVTV  348 (361)
Q Consensus       285 ~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~-~~~~----~~a~v~~  348 (361)
                      ++|+++.|++||  .+||+||..|+++    +||||+|++|+|||||+|       +|+  ++| ||+.    ++|||++
T Consensus       456 ~hIVdtkQqeHv--~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLr--dRg~Fdd~tarF~~acv~E  531 (732)
T KOG0614|consen  456 KHIVDTKQQEHV--FSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILR--DRGSFDDYTARFYVACVLE  531 (732)
T ss_pred             hhccchhHHHHH--HhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhh--hcCCcccchhhhhHHHHHH
Confidence            999999999999  9999999999988    899999999999999999       577  455 4444    3999999


Q ss_pred             hhhhhhhcccc
Q psy9025         349 HREDIHESHIT  359 (361)
Q Consensus       349 a~~~lH~~~i~  359 (361)
                      ||+|||++|||
T Consensus       532 AfeYLH~k~iI  542 (732)
T KOG0614|consen  532 AFEYLHRKGII  542 (732)
T ss_pred             HHHHHHhcCce
Confidence            99999999998

>KOG0500|consensus

Probab=100.00  E-value=1.9e-35  Score=271.88  Aligned_cols=223  Identities=45%  Similarity=0.720  Sum_probs=203.0

Q ss_pred             cCCCCcccc---cceeecceeeeehhhHHHHHhhhhhhcccchHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHH
Q psy9025           5 PRNNETEAN---TWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAH------VFTERAQKIKRIL   75 (361)
Q Consensus         5 ~~~~~~~~~---~~l~g~~vfayiiG~i~s~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~------~~~~l~~~i~~y~   75 (361)
                      |..+.+-++   -.|+|+.+||-++|+|+|++.++|+....          ||++|+.+++      +++.++.||.+||
T Consensus       204 P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~E----------Fq~~mDGiK~YM~~RkV~~~lq~rVikwf  273 (536)
T KOG0500|consen  204 PVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTE----------FQAKMDGIKQYMRYRKVPKALQTRVIKWF  273 (536)
T ss_pred             CCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            555555444   48899999999999999999999999999          8888888866      5578899999999


Q ss_pred             hCCCCCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCC
Q psy9025          76 DFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGE  155 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~  155 (361)
                      +|.|.       +++..||+++++.||+.|+.+++.+.+.+.|+++++|+.+.+.++.+++..+++..|.|||+|++.||
T Consensus       274 dYlwa-------~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGd  346 (536)
T KOG0500|consen  274 DYLWA-------HKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGD  346 (536)
T ss_pred             HHHHh-------ccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCc
Confidence            99999       77788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeeEEEEEeC--cEEEEEeCCCCeechhhhhcccC---CCceeeEEEecceEEEEEEeHHHHHHHHHHCHHH
Q psy9025         156 VGKEMYIVKTGQVQVVSG--ETVLATLTEGSVFGEISLLALAG---TNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA  230 (361)
Q Consensus       156 ~~~~ly~I~~G~v~v~~~--~~~~~~l~~Gd~fGe~~ll~~~~---~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~  230 (361)
                      .+.+||||.+|.+.+..+  ......+++|++|||++++...|   +++|++++++++.+++++|+++|+.+++.+||+.
T Consensus       347 vgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a  426 (536)
T KOG0500|consen  347 VGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDA  426 (536)
T ss_pred             ccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHH
Confidence            999999999999999954  47789999999999999998765   6889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy9025         231 QEVLKKKARQLIKE  244 (361)
Q Consensus       231 ~~~~~~~~~~~l~~  244 (361)
                      +..+.....+.+.+
T Consensus       427 ~~~L~~kgr~iL~k  440 (536)
T KOG0500|consen  427 RKRLEEKGRQILHK  440 (536)
T ss_pred             HHHHHHHHHHHhhh
Confidence            88877666655544

>KOG0498|consensus

Probab=100.00  E-value=6.9e-34  Score=280.33  Aligned_cols=218  Identities=23%  Similarity=0.393  Sum_probs=194.7

Q ss_pred             ecCCCCcccc---cceeecceeeeehhhHHHHHhhhhhhcccchHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC
Q psy9025           4 YPRNNETEAN---TWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKE-RRERFIQERIRHLAHVFTERAQKIKRILDFPP   79 (361)
Q Consensus         4 ~~~~~~~~~~---~~l~g~~vfayiiG~i~s~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~i~~y~~~~~   79 (361)
                      -|.|..|.++   .||+|.++|||+|||++++++........+..+. +.+.+     .+-+++|+++++||++|++|.|
T Consensus       315 ~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~-----m~~~~LP~~LRqRi~~y~q~kw  389 (727)
T KOG0498|consen  315 HANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQW-----MSRRQLPPDLRQRIRRYEQYKW  389 (727)
T ss_pred             CCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHH-----HHhccCCHHHHHHHHHHHHHHH
Confidence            3566666644   5899999999999999999999998777744443 33333     4446799999999999999999


Q ss_pred             CCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCe
Q psy9025          80 TPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKE  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~  159 (361)
                      .       .++++||+++|++||..||.+|+.+++.++++++|+|+++|+..+.+|+..++..+|.||++|++|||+.+.
T Consensus       390 ~-------~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~  462 (727)
T KOG0498|consen  390 L-------ATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTD  462 (727)
T ss_pred             h-------hccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccce
Confidence            8       779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeEEEEEeCc----EEEEEeCCCCeec-hhhhhcccCC-CceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHH
Q psy9025         160 MYIVKTGQVQVVSGE----TVLATLTEGSVFG-EISLLALAGT-NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEV  233 (361)
Q Consensus       160 ly~I~~G~v~v~~~~----~~~~~l~~Gd~fG-e~~ll~~~~~-~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~  233 (361)
                      ||||.+|.+++....    .....|++||+|| |+..+.   . .|.++||+|.+.|+++.|++++|..++++||.+...
T Consensus       463 myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~---~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~  539 (727)
T KOG0498|consen  463 MYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWC---LDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSK  539 (727)
T ss_pred             eEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHH---hcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHH
Confidence            999999999998433    8899999999999 777777   4 777999999999999999999999999999998766


Q ss_pred             HHH
Q psy9025         234 LKK  236 (361)
Q Consensus       234 ~~~  236 (361)
                      +.+
T Consensus       540 ~l~  542 (727)
T KOG0498|consen  540 FLQ  542 (727)
T ss_pred             HHH
Confidence            555

>KOG0499|consensus

Probab=99.97  E-value=2e-31  Score=249.19  Aligned_cols=223  Identities=45%  Similarity=0.762  Sum_probs=203.8

Q ss_pred             cceeecceeeeehhhHHHHHhhhhhhcccchHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHhCCCCCCCCCcCCCCc
Q psy9025          14 TWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLA--HVFTERAQKIKRILDFPPTPSSSTTLSSSS   91 (361)
Q Consensus        14 ~~l~g~~vfayiiG~i~s~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~--~~~~~l~~~i~~y~~~~~~~~~~~~~~~~~   91 (361)
                      .|+.|+-+||.+||-|..++...+.+...+...++      .-+..++  .++.+.++||+.+|+|.|.       +++.
T Consensus       436 ~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD------~tl~ym~~~~i~kevqnRVr~WyeyTW~-------sQr~  502 (815)
T KOG0499|consen  436 NWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMD------DTLAYMNNYSIPKEVQNRVRTWYEYTWD-------SQRM  502 (815)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH------HHHHHHHhcCCcHHHHHHHHHHHHhhhh-------hhcc
Confidence            69999999999999999999999988888332221      1123333  3778899999999999998       9999


Q ss_pred             ccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE
Q psy9025          92 EDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV  171 (361)
Q Consensus        92 ~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~  171 (361)
                      .||..+|+.||..|+.++++..+...|.++.+|++++.+.+..++..++.+.|-|||.|++.|+.+..||||..|.|.|.
T Consensus       503 LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVl  582 (815)
T KOG0499|consen  503 LDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVL  582 (815)
T ss_pred             ccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eC---cEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         172 SG---ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       172 ~~---~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      |+   +.++..|.+|++|||++|+...|+++|+++|+|.+.|.+++|+++++++++..||+.+..+++.++..++++.++
T Consensus       583 GGp~~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~nak~  662 (815)
T KOG0499|consen  583 GGPDGTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNAKT  662 (815)
T ss_pred             cCCCCCEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhcccc
Confidence            64   489999999999999999998889999999999999999999999999999999999999999999999887764


Q ss_pred             h
Q psy9025         249 E  249 (361)
Q Consensus       249 ~  249 (361)
                      .
T Consensus       663 ~  663 (815)
T KOG0499|consen  663 A  663 (815)
T ss_pred             c
Confidence            3

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.97  E-value=4.6e-30  Score=266.52  Aligned_cols=221  Identities=21%  Similarity=0.295  Sum_probs=196.9

Q ss_pred             eecCCCCcccc---cceeecceeeeehhhHHHHHhhhhhhcccchHHHHHHHHHHHHHHHH------HHhhHHHHHHHHH
Q psy9025           3 IYPRNNETEAN---TWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHL------AHVFTERAQKIKR   73 (361)
Q Consensus         3 ~~~~~~~~~~~---~~l~g~~vfayiiG~i~s~~~~~~~~~~~~~~~~~~~~~~q~~~~~~------~~~~~~l~~~i~~   73 (361)
                      |+|.|..|+.+   .||+|+++|||++|+|++++.+.+.....          ++++++.+      +++|..+++||++
T Consensus       270 i~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~----------f~~~~~~~~~ym~~~~lp~~lq~ri~~  339 (823)
T PLN03192        270 LHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTME----------FRNSIEAASNFVGRNRLPPRLKDQILA  339 (823)
T ss_pred             cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            67999999865   58899999999999999999998876666          33333333      4588999999999


Q ss_pred             HHhCCCCCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeC
Q psy9025          74 ILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRK  153 (361)
Q Consensus        74 y~~~~~~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~  153 (361)
                      |++|.|..        ...+++++++.||+.||.++..+++.++++++++|++++++++..|+..++.+.|.|||.|+.+
T Consensus       340 y~~~~~~~--------~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~q  411 (823)
T PLN03192        340 YMCLRFKA--------ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQ  411 (823)
T ss_pred             HHHHHHhh--------ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEEC
Confidence            99999862        3467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHH
Q psy9025         154 GEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN  229 (361)
Q Consensus       154 G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~  229 (361)
                      |+.++.+|||.+|.|++.    +++.++..+++|++|||.+++.   +.+++++++|.++|+++.|++++|.++++.+|+
T Consensus       412 ge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~---~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~  488 (823)
T PLN03192        412 NEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALC---CRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE  488 (823)
T ss_pred             CCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhc---CCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence            999999999999999997    3457889999999999999998   899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9025         230 AQEVLKKKARQLIKE  244 (361)
Q Consensus       230 ~~~~~~~~~~~~l~~  244 (361)
                      ....+.+...++.++
T Consensus       489 d~~~i~~~~l~~~~~  503 (823)
T PLN03192        489 DNVVILKNFLQHHKE  503 (823)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            988777666665543

>KOG0501|consensus

Probab=99.86  E-value=2e-22  Score=188.85  Aligned_cols=222  Identities=18%  Similarity=0.311  Sum_probs=194.3

Q ss_pred             eecCCCCcccc---cceeecceeeeehhhHHHHHhhhhhhcccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC
Q psy9025           3 IYPRNNETEAN---TWLRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPP   79 (361)
Q Consensus         3 ~~~~~~~~~~~---~~l~g~~vfayiiG~i~s~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~y~~~~~   79 (361)
                      |-|.-+-||++   -|++|+.+||-++|+++.+++.+.+....+.+.....+-    ..++.++|+.|.+||-+|.--.|
T Consensus       443 iA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVRe----FlKL~evPK~LsERVMDYvVSTW  518 (971)
T KOG0501|consen  443 IAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVRE----FLKLYEVPKGLSERVMDYVVSTW  518 (971)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHhccHHHHHHHHHHHHHHh
Confidence            34555556644   599999999999999999999999988886665444432    23456799999999988887777


Q ss_pred             CCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCe
Q psy9025          80 TPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKE  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~  159 (361)
                      .       ..+++|.+++|.-+|..+|.+++.+++++.+...|-|+-.++..++.|+-.+...+..|||.|+..|+..|.
T Consensus       519 a-------MtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDa  591 (971)
T KOG0501|consen  519 A-------MTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDA  591 (971)
T ss_pred             h-------hhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccce
Confidence            6       999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHH
Q psy9025         160 MYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKK  236 (361)
Q Consensus       160 ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~  236 (361)
                      ++||++|.+++..++.++.+|+.||+||+.-.-.. .-....++|+|++.|.+..|.++.+.+++.-|..++..|.+
T Consensus       592 LcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~~-t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaR  667 (971)
T KOG0501|consen  592 LCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKEN-TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFAR  667 (971)
T ss_pred             EEEEEecceEEeecCcEEEEeecCccchhHHhhhh-hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999755431 13456789999999999999999999999988888776654

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.86  E-value=1.2e-21  Score=184.50  Aligned_cols=231  Identities=18%  Similarity=0.191  Sum_probs=184.4

Q ss_pred             HHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe-CcEEEEEeCCCCeechhhh
Q psy9025         113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-GETVLATLTEGSVFGEISL  191 (361)
Q Consensus       113 ~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~~~~~~l~~Gd~fGe~~l  191 (361)
                      ...+|+.++|+|+.|+++++.+|...++..+|.+|+.|+..|.+.+++|+|.+|.|+++. +..++..+..||.||..++
T Consensus         4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l   83 (610)
T COG2905           4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSL   83 (610)
T ss_pred             CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhh
Confidence            346899999999999999999999999999999999999999999999999999999884 4468999999999999999


Q ss_pred             hcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhhhhc--CCccccccccccccccC
Q psy9025         192 LALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVS--QPKLSTMDASSVLLDRK  269 (361)
Q Consensus       192 l~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~  269 (361)
                      ++   +......+.|.+|+.||.||++.|.+++.++|.++.++....+.|++....+....  .....+++.++...++.
T Consensus        84 ~~---~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~~~  160 (610)
T COG2905          84 FT---ELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAV  160 (610)
T ss_pred             cc---cCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCCCc
Confidence            98   66667778889999999999999999999999999999999999998766544432  34566788999999999


Q ss_pred             CCCCCCCCcchhHHHhhcccCcccchhhhcc---------CcccccC-cccccccccccccccCchhhhhhhccCCCCCC
Q psy9025         270 GEEPKQAPKLLPIVMQVVPQNSMASKLLRCG---------SKSLNKR-PHRRVNRSASADTYFHPKQQRRLLHQTPTGHN  339 (361)
Q Consensus       270 ~~~~~~~~~~l~~~~~~i~~~~~~~~vl~~~---------ek~i~~~-~~~~~~~t~~d~~~~~~l~~~~~~~~~~~~~~  339 (361)
                      .+.+.   ..++.+.++|.+.|..+.++...         +||++.+ .++..+.|.+++.+|+.-+-+.-.+.-.    
T Consensus       161 ~v~~~---~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~~svd~~~~~----  233 (610)
T COG2905         161 TVSPQ---ASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGDFL----  233 (610)
T ss_pred             ccCcc---CcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCceeecCcchH----
Confidence            99884   44888889999988874443332         2555554 4444556777777776543322222111    


Q ss_pred             CCccceeehhhhhhhh
Q psy9025         340 NSFECQVTVHREDIHE  355 (361)
Q Consensus       340 ~~~~a~v~~a~~~lH~  355 (361)
                        |.|.+.|....||.
T Consensus       234 --feAml~m~r~~I~h  247 (610)
T COG2905         234 --FEAMLMMLRNRIKH  247 (610)
T ss_pred             --HHHHHHHHHhCCce
Confidence              37777777777764

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.76  E-value=2.9e-17  Score=146.63  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=120.2

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCeechhh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEIS  190 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~fGe~~  190 (361)
                      .++++.+++|+.|+++++..+....+.+.|++|+.|+++|+.++.+|+|.+|.|+++    +++.++..+++|++||+.+
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~   85 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA   85 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence            468899999999999999999999999999999999999999999999999999998    5668899999999999999


Q ss_pred             hhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         191 LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       191 ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                      ++.   +.++.++++|.++|+++.||+++|.+++.++|.+...+...+..++....
T Consensus        86 ~~~---~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~  138 (236)
T PRK09392         86 VVL---DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV  138 (236)
T ss_pred             HhC---CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            997   78999999999999999999999999999999999988888777766544

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.68  E-value=1.7e-15  Score=132.70  Aligned_cols=120  Identities=18%  Similarity=0.304  Sum_probs=108.0

Q ss_pred             ccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCc
Q psy9025         125 QDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNR  199 (361)
Q Consensus       125 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~  199 (361)
                      +.++++.++.++..+....|++|++|+.+|++.+.+|||.+|.++++     |++..+..+++|++||+.+++..  ..+
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--~~~   83 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE--GQE   83 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccC--CCC
Confidence            56899999999999999999999999999999999999999999988     45678899999999999999861  346


Q ss_pred             eeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         200 RTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       200 ~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                      +.++++|.++|.++.|++++|.+++..+|.+...+.+.+.+++....
T Consensus        84 ~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~  130 (211)
T PRK11753         84 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTS  130 (211)
T ss_pred             ceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999998887777777765544

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.65  E-value=3.4e-15  Score=116.69  Aligned_cols=109  Identities=34%  Similarity=0.563  Sum_probs=101.4

Q ss_pred             ccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCC
Q psy9025         123 LFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGT  197 (361)
Q Consensus       123 ~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~  197 (361)
                      +|..++++.+..++..++...|.+|+.|+.+|++.+.+|+|.+|.++++     |++..+..+.+|++||+..++.   +
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---~   77 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLG---N   77 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhc---C
Confidence            5789999999999999999999999999999999999999999999998     2458889999999999999986   7


Q ss_pred             CceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHH
Q psy9025         198 NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVL  234 (361)
Q Consensus       198 ~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~  234 (361)
                      .++..+++|.++|.++.|+.++|..++.++|.+...+
T Consensus        78 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~  114 (115)
T cd00038          78 GPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL  114 (115)
T ss_pred             CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence            8899999999999999999999999999999987653

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-14  Score=127.05  Aligned_cols=127  Identities=24%  Similarity=0.353  Sum_probs=114.3

Q ss_pred             ccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhc
Q psy9025         119 SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLA  193 (361)
Q Consensus       119 ~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~  193 (361)
                      ...+.|..++......+........+++|++|+.+|++++.+|+|.+|.++++     |++.++..+++||+||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~   82 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG   82 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence            45667777888888888889999999999999999999999999999999998     4568889999999999999997


Q ss_pred             ccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         194 LAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       194 ~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                         +.+++++++|.++|+++.++++.|..++.++|.+...+...+.++++.....
T Consensus        83 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~  134 (214)
T COG0664          83 ---GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALER  134 (214)
T ss_pred             ---CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHH
Confidence               6689999999999999999999999998889999999988888888776544

>KOG1113|consensus

Probab=99.62  E-value=1.1e-15  Score=136.93  Aligned_cols=117  Identities=21%  Similarity=0.360  Sum_probs=109.2

Q ss_pred             HHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhh
Q psy9025         112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISL  191 (361)
Q Consensus       112 ~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~l  191 (361)
                      .-...++++.-+|.+|+++++..+.+.|..+.+++|+.|+.||+.++.||+|.+|.++++-+...+..+++|..|||++|
T Consensus       118 ~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElAL  197 (368)
T KOG1113|consen  118 RRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFGELAL  197 (368)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCchhhhHh
Confidence            34567889999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             hcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHH
Q psy9025         192 LALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ  231 (361)
Q Consensus       192 l~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~  231 (361)
                      ..   +.||.+|+.|.+++.+|.|++..|..++-.+-.-.
T Consensus       198 my---n~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kk  234 (368)
T KOG1113|consen  198 MY---NPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKK  234 (368)
T ss_pred             hh---CCCcccceeeccccceEEEeeceeEEEeeccchhh
Confidence            99   99999999999999999999999998876665443

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.61  E-value=1.7e-14  Score=128.59  Aligned_cols=126  Identities=13%  Similarity=0.179  Sum_probs=108.6

Q ss_pred             hccCcccccCCHHHHHHHHHhcc-eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhh
Q psy9025         118 LSKVQLFQDCDEALLRELVLKLR-PVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISL  191 (361)
Q Consensus       118 l~~~~~f~~l~~~~l~~l~~~l~-~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~l  191 (361)
                      +++.++|..++++++..|..... ...|++|+.|+++|++.+.+|||.+|.|+++     |++.++..+.+|++||+.++
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            45556566799999999999886 4689999999999999999999999999998     45578888999999999776


Q ss_pred             hcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         192 LALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       192 l~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                      +.    .....+++|.++|+++.||++.|.+++..+|.+...+...+.+++.....
T Consensus        95 ~~----~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~  146 (235)
T PRK11161         95 GS----GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQE  146 (235)
T ss_pred             cC----CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence            53    45567899999999999999999999999999998888888777765443

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.60  E-value=1e-14  Score=129.29  Aligned_cols=109  Identities=14%  Similarity=0.166  Sum_probs=99.2

Q ss_pred             HHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEec
Q psy9025         133 RELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSH  207 (361)
Q Consensus       133 ~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~  207 (361)
                      ..+......+.|++|+.|+.+|++.+.+|||.+|.|+++     |++.++..+.+|++||+.+++.   +.++.++++|.
T Consensus        25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~---~~~~~~~~~A~  101 (226)
T PRK10402         25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELID---KDHETKAVQAI  101 (226)
T ss_pred             HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhc---CCCCCccEEEe
Confidence            357778999999999999999999999999999999998     5568899999999999999887   88999999999


Q ss_pred             ceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q psy9025         208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKE  244 (361)
Q Consensus       208 ~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~  244 (361)
                      ++|+++.+|+++|..++..+|.+...+...+.+++..
T Consensus       102 ~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~  138 (226)
T PRK10402        102 EECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYR  138 (226)
T ss_pred             ccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887777776543

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.60  E-value=1.1e-14  Score=109.41  Aligned_cols=86  Identities=27%  Similarity=0.470  Sum_probs=79.3

Q ss_pred             eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         141 PVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       141 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      .+.|++|++|+++|++.+.+|||.+|.+++.     ++...+..+.+|++||+.+++.   +.++.++++|.++|+++.|
T Consensus         1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~---~~~~~~~~~a~~~~~~~~i   77 (91)
T PF00027_consen    1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLT---GKPSPFTVIALTDSEVLRI   77 (91)
T ss_dssp             -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHH---TSBBSSEEEESSSEEEEEE
T ss_pred             CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecC---CCccEEEEEEccCEEEEEE
Confidence            3689999999999999999999999999998     2235689999999999999998   7799999999999999999


Q ss_pred             eHHHHHHHHHHCHH
Q psy9025         216 NKDDLNEAIEYYPN  229 (361)
Q Consensus       216 ~~~~f~~ll~~~p~  229 (361)
                      |+++|.++++++|+
T Consensus        78 ~~~~~~~~~~~~p~   91 (91)
T PF00027_consen   78 PREDFLQLLQQDPE   91 (91)
T ss_dssp             EHHHHHHHHHHSHH
T ss_pred             eHHHHHHHHHhCcC
Confidence            99999999999995

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>KOG0614|consensus

Probab=99.57  E-value=2e-15  Score=141.13  Aligned_cols=117  Identities=27%  Similarity=0.467  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeec
Q psy9025         108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFG  187 (361)
Q Consensus       108 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fG  187 (361)
                      .-...+..+.+....++++|+..++.+++++|.+..|.+|+.|+++|++++.+|++.+|.+.|..++..++.+++|.+||
T Consensus       146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFG  225 (732)
T KOG0614|consen  146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMGAGTVFG  225 (732)
T ss_pred             ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccCCchhhh
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHC
Q psy9025         188 EISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY  227 (361)
Q Consensus       188 e~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~  227 (361)
                      |++++.   +.+|+++++|+++|.+|.|+++.|+.++...
T Consensus       226 ELAILy---nctRtAsV~alt~~~lWaidR~vFq~IM~~t  262 (732)
T KOG0614|consen  226 ELAILY---NCTRTASVRALTDVRLWAIDREVFQAIMMRT  262 (732)
T ss_pred             HHHHHh---CCcchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999   8999999999999999999999999998654

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.57  E-value=9.4e-14  Score=109.08  Aligned_cols=110  Identities=32%  Similarity=0.532  Sum_probs=98.9

Q ss_pred             ccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCC
Q psy9025         123 LFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGT  197 (361)
Q Consensus       123 ~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~  197 (361)
                      +|.+++++.+..++..++...|.+|++|+++|++.+.+|||.+|.++++     +++..+..+.+|++||+..++.. ..
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~-~~   79 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTN-SR   79 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccC-CC
Confidence            5789999999999999999999999999999999999999999999998     34578999999999999999821 15


Q ss_pred             CceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHH
Q psy9025         198 NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEV  233 (361)
Q Consensus       198 ~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~  233 (361)
                      .+...++.|.++|.++.++.+.|...+..+|.+...
T Consensus        80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  115 (120)
T smart00100       80 RAASATAVALELATLLRIDFRDFLQLLQENPQLLLE  115 (120)
T ss_pred             cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHH
Confidence            678899999999999999999999999999887544

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>KOG1113|consensus

Probab=99.48  E-value=1.1e-13  Score=124.02  Aligned_cols=138  Identities=21%  Similarity=0.299  Sum_probs=123.2

Q ss_pred             CCCcccHHHHHhhCCHhH------------------------HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEE
Q psy9025          88 SSSSEDENKILNNLPLKL------------------------KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVL  143 (361)
Q Consensus        88 ~~~~~~e~~ll~~lp~~L------------------------r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~  143 (361)
                      .+..|.|-+++.+-|...                        -......++..+|+++|+++.|...+...+++.+.++.
T Consensus       188 ~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~  267 (368)
T KOG1113|consen  188 PGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTKS  267 (368)
T ss_pred             CCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhcccceee
Confidence            677889999999999665                        11123558899999999999999999999999999999


Q ss_pred             eCCCCEEEeCCCCCCeEEEEEeeEEEEE--eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHH
Q psy9025         144 YLPGDYICRKGEVGKEMYIVKTGQVQVV--SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLN  221 (361)
Q Consensus       144 ~~~ge~I~~~G~~~~~ly~I~~G~v~v~--~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~  221 (361)
                      |.+|+.|+.+|+.++.+|+|.+|.|.+.  +++..+ .++.||+|||.+++.   +.+|.++|.|.+...|..++++.|+
T Consensus       268 y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~v-kl~~~dyfge~al~~---~~pr~Atv~a~~~~kc~~~dk~~fe  343 (368)
T KOG1113|consen  268 YKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEV-KLKKGDYFGELALLK---NLPRAATVVAKGRLKCAKLDKPRFE  343 (368)
T ss_pred             ccCCceEEeccCCcceEEEecccccchhhccCCeEE-EechhhhcchHHHHh---hchhhceeeccCCceeeeeChHHHH
Confidence            9999999999999999999999999998  334555 999999999999999   8999999999999999999999999


Q ss_pred             HHHHHCHH
Q psy9025         222 EAIEYYPN  229 (361)
Q Consensus       222 ~ll~~~p~  229 (361)
                      .+++...+
T Consensus       344 rllgpc~d  351 (368)
T KOG1113|consen  344 RLLGPCQD  351 (368)
T ss_pred             HHhhHHHH
Confidence            99995444

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.46  E-value=8.3e-13  Score=127.26  Aligned_cols=112  Identities=22%  Similarity=0.269  Sum_probs=101.0

Q ss_pred             HHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe----CcEEEEEeCCCCeechh
Q psy9025         114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS----GETVLATLTEGSVFGEI  189 (361)
Q Consensus       114 ~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~----~~~~~~~l~~Gd~fGe~  189 (361)
                      ...+++++++|++|+++.+..++..++.+.|++|++|+++|+..+.+|||.+|.|+++.    ++.++..+++|++||+.
T Consensus         6 ~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~   85 (413)
T PLN02868          6 VVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG   85 (413)
T ss_pred             HHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh
Confidence            34678899999999999999999999999999999999999999999999999999972    35788899999999975


Q ss_pred             hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHH
Q psy9025         190 SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA  230 (361)
Q Consensus       190 ~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~  230 (361)
                        +.   +.++.++++|.++|+++.|+++.|..+...++..
T Consensus        86 --l~---~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~  121 (413)
T PLN02868         86 --LS---GSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWD  121 (413)
T ss_pred             --hC---CCCcccEEEECCCEEEEEEcHHHHhhhccccccc
Confidence              55   7889999999999999999999999887766543

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.46  E-value=8.4e-13  Score=113.94  Aligned_cols=99  Identities=25%  Similarity=0.375  Sum_probs=87.4

Q ss_pred             CCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCc--eeeEEEecceEEEEEEeHHH
Q psy9025         147 GDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNR--RTADVRSHGFSNLFVLNKDD  219 (361)
Q Consensus       147 ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~--~~~~v~A~~~~~~~~l~~~~  219 (361)
                      |+.|+++|++.+.+|+|.+|.|+++     |++.++..+++|++||+.+++.   +.+  +.++++|.++|.++.+|+++
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~---~~~~~~~~~~~A~~~~~v~~i~~~~   77 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLIT---GHRSDRFYHAVAFTRVELLAVPIEQ   77 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeecc---CCCCccceEEEEecceEEEEeeHHH
Confidence            7899999999999999999999997     4567799999999999999987   443  45789999999999999999


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         220 LNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       220 f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      |..++.++|.+...+.+.+.+++......
T Consensus        78 ~~~l~~~~p~l~~~~~~~l~~~l~~~~~~  106 (193)
T TIGR03697        78 VEKAIEEDPDLSMLLLQGLSSRILQTEMM  106 (193)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888877665433

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.45  E-value=1.5e-12  Score=115.69  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             HHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecc
Q psy9025         134 ELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG  208 (361)
Q Consensus       134 ~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~  208 (361)
                      .+........|++|++|+.+|++++++|||.+|.|+++     |++.++..+.+|++||+.   .   +.++.++++|.+
T Consensus        33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~---~~~~~~~~~A~~  106 (230)
T PRK09391         33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---S---GSTHRFTAEAIV  106 (230)
T ss_pred             cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---C---CCcCCeEEEEcC
Confidence            44556789999999999999999999999999999998     455788899999999964   3   567789999999


Q ss_pred             eEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         209 FSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       209 ~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                      +|.++.|+.+.|.+++..+|.+...+...+.+++.....
T Consensus       107 ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~  145 (230)
T PRK09391        107 DTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQD  145 (230)
T ss_pred             ceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888888887775543

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.37  E-value=1.1e-11  Score=107.89  Aligned_cols=96  Identities=24%  Similarity=0.284  Sum_probs=79.1

Q ss_pred             hcceEEeCCCCEEEeCCC--CCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceE
Q psy9025         138 KLRPVLYLPGDYICRKGE--VGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFS  210 (361)
Q Consensus       138 ~l~~~~~~~ge~I~~~G~--~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~  210 (361)
                      .++...|++|++|+.+|+  +++.+|+|.+|.|+++     |++.++..+.+||+||+.+++    +.++++++.|.++|
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~----~~~~~~~~~A~~~~   80 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA----GAERAYFAEAVTDS   80 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc----CCCCCceEEEcCce
Confidence            467889999999999999  7799999999999998     566889999999999997665    46788999999999


Q ss_pred             EEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q psy9025         211 NLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK  243 (361)
Q Consensus       211 ~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~  243 (361)
                      +++.|+++.|      +|.+...+...+.+++.
T Consensus        81 ~v~~i~~~~~------~~~~~~~l~~~l~~~~~  107 (202)
T PRK13918         81 RIDVLNPALM------SAEDNLVLTQHLVRTLA  107 (202)
T ss_pred             EEEEEEHHHc------ChhhHHHHHHHHHHHHH
Confidence            9999999987      45555444444444433

>KOG0616|consensus

Probab=98.81  E-value=7.2e-10  Score=98.05  Aligned_cols=83  Identities=10%  Similarity=0.082  Sum_probs=70.5

Q ss_pred             CCCCcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC
Q psy9025         274 KQAPKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS  341 (361)
Q Consensus       274 ~~~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~  341 (361)
                      ++...++|.+ ++.|+..+|.+|+  .+||++++.+.+|    +.-|++|++++||+|+.+       .+++ ..-++|+
T Consensus        68 ~g~yYAmKvL~k~~vVklKQveH~--~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk-~~rF~e~  144 (355)
T KOG0616|consen   68 SGNYYAMKVLDKQKVVKLKQVEHT--HNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRK-SGRFSEP  144 (355)
T ss_pred             CCceeehhhcCHHHHHHHHHHHHH--hhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHh-cCCCCch
Confidence            3456788888 9999999999999  9999999999988    566999999999999877       4552 2226666


Q ss_pred             ----ccceeehhhhhhhhcccc
Q psy9025         342 ----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 ----~~a~v~~a~~~lH~~~i~  359 (361)
                          |||.|+.|+||||+++|+
T Consensus       145 ~arFYAAeivlAleylH~~~ii  166 (355)
T KOG0616|consen  145 HARFYAAEIVLALEYLHSLDII  166 (355)
T ss_pred             hHHHHHHHHHHHHHHHHhcCee
Confidence                499999999999999997

>KOG2968|consensus

Probab=98.69  E-value=2.5e-08  Score=99.27  Aligned_cols=113  Identities=25%  Similarity=0.363  Sum_probs=100.4

Q ss_pred             HHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEE
Q psy9025         130 ALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADV  204 (361)
Q Consensus       130 ~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v  204 (361)
                      .++..+-..+.+....+|+.++++||.++++|+|.+|.++..     ++..++..++.||.+|+...++   +.+|..|+
T Consensus       499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt---~~~R~tTv  575 (1158)
T KOG2968|consen  499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLT---KQPRATTV  575 (1158)
T ss_pred             HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhh---cCCccceE
Confidence            355666677899999999999999999999999999999987     2345889999999999999999   89999999


Q ss_pred             EecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q psy9025         205 RSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN  245 (361)
Q Consensus       205 ~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~  245 (361)
                      .|+-++++..||.-.|..+...||.+...+.+.+.++....
T Consensus       576 ~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g~  616 (1158)
T KOG2968|consen  576 MAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILGS  616 (1158)
T ss_pred             EEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999888877777776443

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=98.41  E-value=2.7e-05  Score=62.59  Aligned_cols=118  Identities=10%  Similarity=0.106  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHh-cceEEeCCCCEEEeCCCC-CCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcc--cCCCceee
Q psy9025         127 CDEALLRELVLK-LRPVLYLPGDYICRKGEV-GKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLAL--AGTNRRTA  202 (361)
Q Consensus       127 l~~~~l~~l~~~-l~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~--~~~~~~~~  202 (361)
                      .+......|+.+ .+.....+|+.-.-||.. .|.+-++++|++.+..++..+..+.|.++.........  ..+.....
T Consensus        15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQV   94 (153)
T PF04831_consen   15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLRPSEDDKFQV   94 (153)
T ss_pred             CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccccCCCCeEEE
Confidence            588899999988 778999999999888865 49999999999999999999999999998877665542  23577899


Q ss_pred             EEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q psy9025         203 DVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKE  244 (361)
Q Consensus       203 ~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~  244 (361)
                      |++|.++|..+..+|+.+..++...|.++..+...+.+-+.+
T Consensus        95 TitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~  136 (153)
T PF04831_consen   95 TITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAE  136 (153)
T ss_pred             EEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887776655443

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>KOG2968|consensus

Probab=98.13  E-value=2.1e-05  Score=79.03  Aligned_cols=118  Identities=19%  Similarity=0.307  Sum_probs=95.7

Q ss_pred             cCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeech-hhhhc
Q psy9025         120 KVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGE-ISLLA  193 (361)
Q Consensus       120 ~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe-~~ll~  193 (361)
                      .-|.|-.|.        .+++...+..|++|++.|++.+.+|.+.+|.++++     |++..+..+.+|+.|-. .+++.
T Consensus       104 EkP~fl~L~--------rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd  175 (1158)
T KOG2968|consen  104 EKPVFLELD--------RHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILD  175 (1158)
T ss_pred             ccceeeeec--------hhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHH
Confidence            555555444        78889999999999999999999999999999998     56688999999976644 33332


Q ss_pred             ccCC---CceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q psy9025         194 LAGT---NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN  245 (361)
Q Consensus       194 ~~~~---~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~  245 (361)
                      ...+   ..+...++|.++|.+..+|...|..+...||+-...+.+.+..|+++.
T Consensus       176 ~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~v  230 (1158)
T KOG2968|consen  176 SLPGFPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQRV  230 (1158)
T ss_pred             hccCCCcccceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHHh
Confidence            1113   346778999999999999999999999999999888888888777753

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=98.08  E-value=0.00018  Score=61.74  Aligned_cols=108  Identities=9%  Similarity=-0.017  Sum_probs=82.6

Q ss_pred             HHHHHHhcceEEeCCCCEE-EeCCCCCCeEEEEEeeEEEEE-eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecce
Q psy9025         132 LRELVLKLRPVLYLPGDYI-CRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF  209 (361)
Q Consensus       132 l~~l~~~l~~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~-~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~  209 (361)
                      ...|....++..+++|..+ +......+.+|+|.+|.|.+. +++..+....+..+||-...+.   .....+..+|.++
T Consensus        15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~---~~~~~~~l~ae~~   91 (207)
T PRK11832         15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLM---KNDIPYKLISEGN   91 (207)
T ss_pred             HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccC---CCCceEEEEEcCc
Confidence            3455666788999999997 544444477999999999997 3447778888999999988776   4555688999999


Q ss_pred             EEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q psy9025         210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK  243 (361)
Q Consensus       210 ~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~  243 (361)
                      |+.+.+|.++|.++++++.-+ +.+.....-.+.
T Consensus        92 c~~~~i~~~~~~~iie~~~LW-~~~~~~l~~~~~  124 (207)
T PRK11832         92 CTGYHLPAKQTITLIEQNQLW-RDAFYWLAWQNR  124 (207)
T ss_pred             cEEEEeeHHHHHHHHHHhchH-HHHHHHHHHHHH
Confidence            999999999999999987643 333333333333

>KOG0592|consensus

Probab=97.83  E-value=1.6e-06  Score=82.84  Aligned_cols=81  Identities=7%  Similarity=0.059  Sum_probs=68.2

Q ss_pred             CCcchhHH-HhhcccCcccchhhhccCcccccCc-ccc----cccccccccccCchhhhh-------hhccCCCC-CCCC
Q psy9025         276 APKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR-------LLHQTPTG-HNNS  341 (361)
Q Consensus       276 ~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~-~~~~  341 (361)
                      ...++|-+ |++|.......-|  ..||+.|..+ .+|    |+-||+|+.-+|++++.+       +++  ..| |+|.
T Consensus        99 keYAiKVl~K~~Iike~KvkYV--~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~--K~Gsfde~  174 (604)
T KOG0592|consen   99 KEYAIKVLDKRYIIKEKKVKYV--TREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIK--KYGSFDET  174 (604)
T ss_pred             ceeeHhhhhHHHHHhhcccchh--hHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHH--HhCcchHH
Confidence            46678888 9999998888888  8899999997 566    788999999999999887       344  234 8887


Q ss_pred             c----cceeehhhhhhhhccccC
Q psy9025         342 F----ECQVTVHREDIHESHITS  360 (361)
Q Consensus       342 ~----~a~v~~a~~~lH~~~i~~  360 (361)
                      +    ||.++-|+||||++|||-
T Consensus       175 caR~YAAeIldAleylH~~GIIH  197 (604)
T KOG0592|consen  175 CARFYAAEILDALEYLHSNGIIH  197 (604)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcee
Confidence            4    999999999999999983

>KOG0605|consensus

Probab=97.64  E-value=2.5e-05  Score=74.85  Aligned_cols=98  Identities=10%  Similarity=0.070  Sum_probs=81.3

Q ss_pred             ccccccccccCCCCCCC-----------CCcchhHH-HhhcccCcccchhhhccCcccccCcccc----ccccccccccc
Q psy9025         259 MDASSVLLDRKGEEPKQ-----------APKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYF  322 (361)
Q Consensus       259 ~~~~l~~~~~~~~~~~~-----------~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~  322 (361)
                      .+.|+.+....|+++.+           ...++|.+ |..|.+.++..||  +.||+||...+++    ++-+|+|..|+
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV--~aERdiL~~~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHV--RAERDILAEVDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHH--HHHHHHhhhcCCCcEEEEEEEecCCCee
Confidence            45677788888876644           35577888 8899999999999  9999999998888    78899999999


Q ss_pred             Cchhhhh--------hhccCCCCCCCCc----cceeehhhhhhhhccccC
Q psy9025         323 HPKQQRR--------LLHQTPTGHNNSF----ECQVTVHREDIHESHITS  360 (361)
Q Consensus       323 ~~l~~~~--------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~~  360 (361)
                      |..||..        +++...  +.|.+    .|-.|.|++.||+.|+|-
T Consensus       217 YLiMEylPGGD~mTLL~~~~~--L~e~~arfYiaE~vlAI~~iH~~gyIH  264 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMRKDT--LTEDWARFYIAETVLAIESIHQLGYIH  264 (550)
T ss_pred             EEEEEecCCccHHHHHHhcCc--CchHHHHHHHHHHHHHHHHHHHcCccc
Confidence            9998755        566555  77774    999999999999999973

>KOG0598|consensus

Probab=97.62  E-value=6.6e-06  Score=75.29  Aligned_cols=96  Identities=6%  Similarity=0.042  Sum_probs=76.0

Q ss_pred             cccccccccCCCCCC-----------CCCcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccC
Q psy9025         260 DASSVLLDRKGEEPK-----------QAPKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFH  323 (361)
Q Consensus       260 ~~~l~~~~~~~~~~~-----------~~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~  323 (361)
                      ..++.+..+.|.++.           +...++|.+ |++|++.+...|+  ..|++|+...++|    +.-.|++...+|
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~--~~Er~IL~~v~hPFiv~l~ysFQt~~kLy  101 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHT--KAERNILSKIKHPFIVKLIYSFQTEEKLY  101 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHH--HHHHHHHHhCCCCcEeeeEEecccCCeEE
Confidence            445556666555442           236688888 8999999889999  9999999999999    455999999999


Q ss_pred             chhhhh--------hhccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         324 PKQQRR--------LLHQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       324 ~l~~~~--------~~~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ++++..        +-+.+.  ++|+    |.|=+++|++|||++|||
T Consensus       102 lVld~~~GGeLf~hL~~eg~--F~E~~arfYlaEi~lAL~~LH~~gIi  147 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQREGR--FSEDRARFYLAEIVLALGYLHSKGII  147 (357)
T ss_pred             EEEeccCCccHHHHHHhcCC--cchhHHHHHHHHHHHHHHHHHhCCee
Confidence            998766        344334  7776    499999999999999997

>KOG0610|consensus

Probab=97.25  E-value=2.4e-05  Score=72.72  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             CCcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCC-CCCC-
Q psy9025         276 APKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTG-HNNS-  341 (361)
Q Consensus       276 ~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~-~~~~-  341 (361)
                      ..+++|-+ +..+.+.....++  ..|+.|+..+++|    ||-.|..++|.+..|+.|       +.++.|.. +.|+ 
T Consensus       103 ~~fAmKVmdK~~l~~rkKl~Ra--~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~  180 (459)
T KOG0610|consen  103 CLFAMKVMDKESLASRKKLKRA--QTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESA  180 (459)
T ss_pred             ceEEEEEecHHHHhhhhHHHHH--HHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhh
Confidence            47778877 8888887777777  8899999999999    666899999999999999       34434422 6665 


Q ss_pred             ---ccceeehhhhhhhhcccc
Q psy9025         342 ---FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 ---~~a~v~~a~~~lH~~~i~  359 (361)
                         |||=|+.|+||||-.|||
T Consensus       181 aRFYaAEvl~ALEYLHmlGiv  201 (459)
T KOG0610|consen  181 ARFYAAEVLLALEYLHMLGIV  201 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhcee
Confidence               499999999999999997

>KOG3542|consensus

Probab=97.25  E-value=0.00067  Score=66.50  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEe-CCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCC
Q psy9025         106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLY-LPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGS  184 (361)
Q Consensus       106 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~-~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd  184 (361)
                      |.+-.++...+|+.+.|-|.+++-...++|+..|..... .+|.+|+..|+..+..|+|+.|.|++...+.....+.-|+
T Consensus       271 rtddDieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGn  350 (1283)
T KOG3542|consen  271 RTDDDIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGN  350 (1283)
T ss_pred             cchHHHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeeccc
Confidence            444456778899999999999999999999998775444 6799999999999999999999999997666667788899


Q ss_pred             eechhhhhcccCCCceeeEEE-ecceEEEEEEeHHHHHHHHHHC
Q psy9025         185 VFGEISLLALAGTNRRTADVR-SHGFSNLFVLNKDDLNEAIEYY  227 (361)
Q Consensus       185 ~fGe~~ll~~~~~~~~~~~v~-A~~~~~~~~l~~~~f~~ll~~~  227 (361)
                      .||...-..   .....-.++ -+.||+..+|..++|-.++..-
T Consensus       351 SFG~~PT~d---kqym~G~mRTkVDDCqFVciaqqDycrIln~v  391 (1283)
T KOG3542|consen  351 SFGAEPTPD---KQYMIGEMRTKVDDCQFVCIAQQDYCRILNTV  391 (1283)
T ss_pred             ccCCCCCcc---hhhhhhhhheecccceEEEeehhhHHHHHHHH
Confidence            999865543   222222222 3578999999999998887643

>KOG0694|consensus

Probab=96.88  E-value=5.7e-05  Score=74.43  Aligned_cols=96  Identities=11%  Similarity=0.061  Sum_probs=68.2

Q ss_pred             cccccccccCCCCCCC-----------CCcchhHH-HhhcccCcccchhhhccCcccccCcc-cc----ccccccccccc
Q psy9025         260 DASSVLLDRKGEEPKQ-----------APKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPH-RR----VNRSASADTYF  322 (361)
Q Consensus       260 ~~~l~~~~~~~~~~~~-----------~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~-~~----~~~t~~d~~~~  322 (361)
                      +.++.+..++|++..+           ...++|.+ |..|.+...-+..  ..||+|..-.. +|    ++.+|+-...+
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~--~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESL--MCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHH--HHHHHHHHHhccCCeEeecccccccCCeE
Confidence            3456666666665433           25567777 5566665544444  57888887744 66    67799999999


Q ss_pred             Cchhhhh-------hhccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         323 HPKQQRR-------LLHQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       323 ~~l~~~~-------~~~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      |+.|+.+       +.+...  ++|.    |||||+.|+.|||++|||
T Consensus       445 ~fvmey~~Ggdm~~~~~~~~--F~e~rarfyaAev~l~L~fLH~~~II  490 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIHTDV--FSEPRARFYAAEVVLGLQFLHENGII  490 (694)
T ss_pred             EEEEEecCCCcEEEEEeccc--ccHHHHHHHHHHHHHHHHHHHhcCce
Confidence            9999988       223122  6666    499999999999999997

>KOG0575|consensus

Probab=96.39  E-value=0.00028  Score=68.69  Aligned_cols=82  Identities=9%  Similarity=0.014  Sum_probs=68.3

Q ss_pred             CCcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh------hhccCCCCCCCC---
Q psy9025         276 APKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR------LLHQTPTGHNNS---  341 (361)
Q Consensus       276 ~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~------~~~~~~~~~~~~---  341 (361)
                      ...+.|-+ ++.|...++.+.+  .+|-.|...+.++    ++.-|.|+.++|+.+|-|      -+.+..+-++|.   
T Consensus        44 e~~A~KvVpk~~l~k~~~reKv--~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~Krrk~ltEpEar  121 (592)
T KOG0575|consen   44 EVVAVKVVPKKLLKKPKQREKV--LNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLKRRKPLTEPEAR  121 (592)
T ss_pred             cEEEEEEeehHHhcCcchHHHH--HHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHHhcCCCCcHHHH
Confidence            35567777 8888889999999  8998898888888    678999999999999999      244333448888   


Q ss_pred             -ccceeehhhhhhhhcccc
Q psy9025         342 -FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 -~~a~v~~a~~~lH~~~i~  359 (361)
                       |.-++|.++-|||+.|||
T Consensus       122 y~l~QIv~GlkYLH~~~Ii  140 (592)
T KOG0575|consen  122 YFLRQIVEGLKYLHSLGII  140 (592)
T ss_pred             HHHHHHHHHHHHHHhcCce
Confidence             388999999999999997

>KOG3542|consensus

Probab=96.03  E-value=0.0093  Score=58.78  Aligned_cols=106  Identities=22%  Similarity=0.232  Sum_probs=84.3

Q ss_pred             CCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEe
Q psy9025         101 LPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATL  180 (361)
Q Consensus       101 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l  180 (361)
                      -|+.++........-..|++...|++|-...+..++.......++...++|+.|+.+...||+++|.|-+.+.     .+
T Consensus        22 k~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq-----i~   96 (1283)
T KOG3542|consen   22 KPPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ-----IY   96 (1283)
T ss_pred             CCcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc-----ee
Confidence            4555555544444445788899999999999999999999999999999999999999999999999988653     33


Q ss_pred             CCCCeechhhhhcccCCCceeeEEEecceEEEEEEeH
Q psy9025         181 TEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNK  217 (361)
Q Consensus       181 ~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~  217 (361)
                      -|-.+||-.-      +..|..++-.+++++..+++.
T Consensus        97 mp~~~fgkr~------g~~r~~nclllq~semivid~  127 (1283)
T KOG3542|consen   97 MPYGCFGKRT------GQNRTHNCLLLQESEMIVIDY  127 (1283)
T ss_pred             cCcccccccc------ccccccceeeecccceeeeec
Confidence            4555676643      666888888888998888853

>KOG0612|consensus

Probab=96.02  E-value=0.0015  Score=68.09  Aligned_cols=99  Identities=7%  Similarity=0.052  Sum_probs=75.6

Q ss_pred             cccccccccccCCCCCCCC-----------CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccc
Q psy9025         258 TMDASSVLLDRKGEEPKQA-----------PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTY  321 (361)
Q Consensus       258 ~~~~~l~~~~~~~~~~~~~-----------~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~  321 (361)
                      ....|+.+....|++..+.           .++.|.+ |=.|....-++-+  +.|||||-..+++    +.-+|+|..|
T Consensus        72 l~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F--~EERDimv~~ns~Wiv~LhyAFQD~~~  149 (1317)
T KOG0612|consen   72 LKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACF--REERDIMVFGNSEWIVQLHYAFQDERY  149 (1317)
T ss_pred             CCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHH--HHHhHHHHcCCcHHHHHHHHHhcCccc
Confidence            3456777788888776553           4456666 5566666667777  8999999998887    5669999999


Q ss_pred             cCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         322 FHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       322 ~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      +|++|+.-       +|++-+ .++|+|    +|=+|+|++-||+-|-|
T Consensus       150 LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH~mgyV  197 (1317)
T KOG0612|consen  150 LYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLHSMGYV  197 (1317)
T ss_pred             eEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHhccce
Confidence            99999866       455222 277775    99999999999999976

>KOG0608|consensus

Probab=93.25  E-value=0.0074  Score=59.64  Aligned_cols=80  Identities=8%  Similarity=0.023  Sum_probs=61.6

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCC--CCCCCCc
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTP--TGHNNSF  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~--~~~~~~~  342 (361)
                      .+.|.+ |+-+....|-.||  -.||||+...+..    ||-.|+|...+|+.|+.+        +.+.+.  ..+.++|
T Consensus       657 YAmKTLrKaDVl~rnQvaHV--KAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFY  734 (1034)
T KOG0608|consen  657 YAMKTLRKADVLMRNQVAHV--KAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFY  734 (1034)
T ss_pred             HHHhhhHHHHHHhhhhhhhh--hhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHHHhccCHHHHHHHH
Confidence            355667 6666677888999  9999999998877    677999999999998876        344222  0033346


Q ss_pred             cceeehhhhhhhhcccc
Q psy9025         343 ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 ~a~v~~a~~~lH~~~i~  359 (361)
                      .|-|+.|.|+.|+.|.|
T Consensus       735 IAEltcAiesVHkmGFI  751 (1034)
T KOG0608|consen  735 IAELTCAIESVHKMGFI  751 (1034)
T ss_pred             HHHHHHHHHHHHhccce
Confidence            99999999999999976

>KOG0690|consensus

Probab=92.53  E-value=0.02  Score=52.27  Aligned_cols=80  Identities=8%  Similarity=0.064  Sum_probs=52.1

Q ss_pred             CCcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCC-
Q psy9025         276 APKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNS-  341 (361)
Q Consensus       276 ~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~-  341 (361)
                      ...++|.+ |..|....--+|-  ..|.+.++.+++|    +--.|+-..-+-+.|+..        +.+.  +.+.|+ 
T Consensus       194 k~YAiKIlkKeviiakdEVAHT--lTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsre--r~FsE~R  269 (516)
T KOG0690|consen  194 KLYAIKILKKEVIIAKDEVAHT--LTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRE--RVFSEDR  269 (516)
T ss_pred             ceeehhhhhhhheeehHHhhhh--hhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhhh--hcccchh
Confidence            45577777 4444545555666  7789999999999    333555554444444433        2221  224443 


Q ss_pred             ---ccceeehhhhhhhhcccc
Q psy9025         342 ---FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 ---~~a~v~~a~~~lH~~~i~  359 (361)
                         |.|-+|.|+.|||+++|+
T Consensus       270 tRFYGaEIvsAL~YLHs~~iv  290 (516)
T KOG0690|consen  270 TRFYGAEIVSALGYLHSRNIV  290 (516)
T ss_pred             hhhhhHHHHHHhhhhhhCCee
Confidence               699999999999999997

>KOG0615|consensus

Probab=92.22  E-value=0.018  Score=54.12  Aligned_cols=82  Identities=9%  Similarity=-0.046  Sum_probs=54.2

Q ss_pred             CcchhHH-HhhcccCc--ccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCC
Q psy9025         277 PKLLPIV-MQVVPQNS--MASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNS  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~--~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~  341 (361)
                      ..++|.+ ++++....  .....-...|-+||+.+++|    +..-|-+..|.||.||..        +..+..  +.|+
T Consensus       199 ~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~nk~--l~ed  276 (475)
T KOG0615|consen  199 QVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVANKY--LRED  276 (475)
T ss_pred             EEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhccc--cccc
Confidence            4566666 55555533  11222126889999999999    455666777778887766        222122  4555


Q ss_pred             ----ccceeehhhhhhhhccccC
Q psy9025         342 ----FECQVTVHREDIHESHITS  360 (361)
Q Consensus       342 ----~~a~v~~a~~~lH~~~i~~  360 (361)
                          +.=+++.|+-|||+.||+-
T Consensus       277 ~~K~~f~Qll~avkYLH~~GI~H  299 (475)
T KOG0615|consen  277 LGKLLFKQLLTAVKYLHSQGIIH  299 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHcCccc
Confidence                3778999999999999973

>KOG0695|consensus

Probab=91.51  E-value=0.035  Score=50.88  Aligned_cols=81  Identities=9%  Similarity=0.100  Sum_probs=49.7

Q ss_pred             CcchhHHHhhccc-CcccchhhhccCcccccC-cccc----cccccccccccCchhhhh----------hhccCCCCCCC
Q psy9025         277 PKLLPIVMQVVPQ-NSMASKLLRCGSKSLNKR-PHRR----VNRSASADTYFHPKQQRR----------LLHQTPTGHNN  340 (361)
Q Consensus       277 ~~~l~~~~~~i~~-~~~~~~vl~~~ek~i~~~-~~~~----~~~t~~d~~~~~~l~~~~----------~~~~~~~~~~~  340 (361)
                      ..++|-+|+.++. -....-|  +.||....+ .+.|    +..-|+-++-+.+..+.+          ..++-|.-+.+
T Consensus       277 iyamkvvkkel~nddedidwv--qtek~vfe~asn~pflvglhscfqtesrlffvieyv~ggdlmfhmqrqrklpeehar  354 (593)
T KOG0695|consen  277 IYAMKVVKKELVNDDEDIDWV--QTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHAR  354 (593)
T ss_pred             eeehhhHHHHhcCCcccchhH--HhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEecCcceeeehhhhhcCcHHHhh
Confidence            4566777666654 3334444  677877777 5556    344555555444443333          12222222444


Q ss_pred             Cccceeehhhhhhhhcccc
Q psy9025         341 SFECQVTVHREDIHESHIT  359 (361)
Q Consensus       341 ~~~a~v~~a~~~lH~~~i~  359 (361)
                      +|.|-+..|+.|||++|||
T Consensus       355 fys~ei~lal~flh~rgii  373 (593)
T KOG0695|consen  355 FYSAEICLALNFLHERGII  373 (593)
T ss_pred             hhhHHHHHHHHHHhhcCee
Confidence            5699999999999999998

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=91.22  E-value=1.8  Score=29.85  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             EEeCCCCEEEeCCCCCC-eEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         142 VLYLPGDYICRKGEVGK-EMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       142 ~~~~~ge~I~~~G~~~~-~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      ..++||+..-..-.+.. .+++|.+|.+.+.-++. ...+.+||.+=..+      +.+.......-+++.++.+
T Consensus         3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i~~------~~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen    3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPGDAIYIPP------GVPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETTEEEEEET------TSEEEEEEESSSEEEEEEE
T ss_pred             EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCCEEEEECC------CCeEEEEECCCCCEEEEEE
Confidence            46788887666555565 89999999999985444 67788988652221      4444444444555666554

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=90.50  E-value=0.015  Score=55.10  Aligned_cols=59  Identities=8%  Similarity=0.050  Sum_probs=43.3

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    ++..+.+..++|++++.|       .+ ++.+  +++.    +++.++.|++|||++||+
T Consensus        49 ~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--l~~~~~~~~~~qi~~aL~~lH~~giv  123 (363)
T cd05628          49 RAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKDT--LTEEETQFYIAETVLAIDSIHQLGFI  123 (363)
T ss_pred             HHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            5677777777776    345778888888888877       22 2222  5554    288999999999999997

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=89.32  E-value=0.021  Score=54.53  Aligned_cols=78  Identities=9%  Similarity=0.044  Sum_probs=51.5

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc--
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF--  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~--  342 (361)
                      .++|.+ +..+....+..++  ..|..++..++++    ++..+.+..++|+.++.|       .+ +...  ++|..  
T Consensus        29 ~aiK~i~~~~~~~~~~~~~~--~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~e~~~~  104 (382)
T cd05625          29 YAMKTLRKKDVLLRNQVAHV--KAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGI--FPEDLAR  104 (382)
T ss_pred             EEEEEEeHHHhhhHHHHHHH--HHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCC--CCHHHHH
Confidence            344444 3333333344455  6778888887776    455788888888888876       22 2122  55542  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        .+.++.|++|||++||+
T Consensus       105 ~~~~qi~~al~~lH~~~iv  123 (382)
T cd05625         105 FYIAELTCAVESVHKMGFI  123 (382)
T ss_pred             HHHHHHHHHHHHHHhCCee
Confidence              78899999999999997

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=88.12  E-value=0.032  Score=52.72  Aligned_cols=78  Identities=8%  Similarity=0.080  Sum_probs=51.2

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc--
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF--  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~--  342 (361)
                      .++|.+ +..+.......++  ..|..++..++++    ++..+.+..++|++++.|       .+ ++..  +.|..  
T Consensus        29 vaiK~~~~~~~~~~~~~~~~--~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~--l~~~~~~  104 (364)
T cd05599          29 YAMKKLRKSEMLEKEQVAHV--RAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKKDT--FTEEETR  104 (364)
T ss_pred             EEEEEEEHHHhhhhhHHHHH--HHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHcCC--CCHHHHH
Confidence            344444 2333333333444  5678888887777    445778888888888876       22 2222  55552  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        .+.++.|++|||++||+
T Consensus       105 ~~~~qi~~aL~~lH~~~iv  123 (364)
T cd05599         105 FYIAETILAIDSIHKLGYI  123 (364)
T ss_pred             HHHHHHHHHHHHHHHCCeE
Confidence              78999999999999986

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=87.67  E-value=0.034  Score=52.57  Aligned_cols=59  Identities=8%  Similarity=0.058  Sum_probs=43.2

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    ++..+.+..++|++++.|       .+ +...  +++.    ++++++.|++|||++||+
T Consensus        49 ~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--l~~~~~~~~~~qi~~~L~~lH~~giv  123 (360)
T cd05627          49 RAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDT--LSEEATQFYIAETVLAIDAIHQLGFI  123 (360)
T ss_pred             HHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHCCeE
Confidence            5677777777766    445778888888888877       22 2222  5555    388999999999999996

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=87.58  E-value=0.036  Score=52.90  Aligned_cols=78  Identities=9%  Similarity=0.061  Sum_probs=50.7

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc--
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF--  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~--  342 (361)
                      .++|.+ +..+.......++  ..|..++..++++    ++..+.+..++|+.++.|       ++ +...  ++|..  
T Consensus        29 ~aiK~i~~~~~~~~~~~~~~--~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~e~~~~  104 (381)
T cd05626          29 YAMKTLRKKDVLNRNQVAHV--KAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMEV--FPEVLAR  104 (381)
T ss_pred             EEEEEEEHHHhhhhHHHHHH--HHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhcCC--CCHHHHH
Confidence            344444 3333333333445  5677788777776    445777888888888876       22 2222  55553  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        ++.++.|++|||++||+
T Consensus       105 ~~~~qi~~aL~~LH~~giv  123 (381)
T cd05626         105 FYIAELTLAIESVHKMGFI  123 (381)
T ss_pred             HHHHHHHHHHHHHHhCCee
Confidence              78999999999999996

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=87.34  E-value=0.034  Score=52.91  Aligned_cols=59  Identities=8%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    ++..+.+..++|+.++.|       .+ +...  +++.    +++.++.|++|||++||+
T Consensus        49 ~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~ql~~aL~~LH~~giv  123 (377)
T cd05629          49 KAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYDT--FSEDVTRFYMAECVLAIEAVHKLGFI  123 (377)
T ss_pred             HHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            5677777777777    445778888899898877       12 2122  4444    278899999999999996

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=87.28  E-value=0.039  Score=52.56  Aligned_cols=59  Identities=10%  Similarity=0.129  Sum_probs=44.2

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    +...+.+..++|+.++.|       ++.+..  +++..    +++++.|++|||++||+
T Consensus        91 ~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~--~~~~~~~~~~~qil~aL~~LH~~~Iv  164 (370)
T cd05621          91 WEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYD--VPEKWAKFYTAEVVLALDAIHSMGLI  164 (370)
T ss_pred             HHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHCCeE
Confidence            5677788777777    445778888899898877       244223  55553    78999999999999986

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=86.84  E-value=0.045  Score=52.05  Aligned_cols=59  Identities=10%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    +...+.+..++|+.++.|       ++++..  +++..    +++++.|++|||++||+
T Consensus        91 ~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~--l~~~~~~~~~~qi~~aL~~LH~~~iv  164 (370)
T cd05596          91 WEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNYD--IPEKWARFYTAEVVLALDAIHSMGFI  164 (370)
T ss_pred             HHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            4567777777777    344777888888888876       344333  55554    78999999999999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=86.77  E-value=0.038  Score=52.63  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    +...+.+..++|+.++.|       ++.+..  +++..    ++.++.|++|||++||+
T Consensus        91 ~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~~~--~~~~~~~~~~~qi~~aL~~LH~~~iv  164 (371)
T cd05622          91 WEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD--VPEKWARFYTAEVVLALDAIHSMGFI  164 (371)
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHCCEE
Confidence            5677777777777    445777888888888866       233222  55553    78999999999999986

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=84.73  E-value=0.065  Score=50.94  Aligned_cols=60  Identities=10%  Similarity=0.036  Sum_probs=42.7

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++.++.++    ++..+.+..++|+.++.|       ++.+ ...+++..    .+.++.|++|||++||+
T Consensus        49 ~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~-~~~~~~~~~~~~~~qi~~al~~lH~~~iv  123 (376)
T cd05598          49 KAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIR-LGIFEEDLARFYIAELTCAIESVHKMGFI  123 (376)
T ss_pred             HHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeE
Confidence            5677788777766    445777888888888876       2221 11255553    77899999999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=83.64  E-value=0.074  Score=49.61  Aligned_cols=59  Identities=14%  Similarity=0.037  Sum_probs=41.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..+.++    +...+.+..++|+.++.|       .+ +...  +++..    ...++.|+.|||++||+
T Consensus        66 ~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~~iv  140 (329)
T PTZ00263         66 AQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGR--FPNDVAKFYHAELVLAFEYLHSKDII  140 (329)
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            5677777777776    344677778888888766       12 2122  45542    67899999999999986

>KOG0585|consensus

Probab=83.06  E-value=0.18  Score=48.53  Aligned_cols=62  Identities=13%  Similarity=0.058  Sum_probs=40.0

Q ss_pred             ccCcccccCcccc-ccc-----ccccccccCchhhhhh----hccCC-CC-CCCC----ccceeehhhhhhhhccccC
Q psy9025         299 CGSKSLNKRPHRR-VNR-----SASADTYFHPKQQRRL----LHQTP-TG-HNNS----FECQVTVHREDIHESHITS  360 (361)
Q Consensus       299 ~~ek~i~~~~~~~-~~~-----t~~d~~~~~~l~~~~~----~~~~~-~~-~~~~----~~a~v~~a~~~lH~~~i~~  360 (361)
                      +.|--||+.|+++ |-+     .-+.+.++||.++-|-    .-.++ .- +.|.    +---||.++||||..|||-
T Consensus       156 ~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiH  233 (576)
T KOG0585|consen  156 RREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIH  233 (576)
T ss_pred             HHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeec
Confidence            5667788888887 322     3345567999999882    22111 11 2222    2456899999999999983

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=82.89  E-value=0.095  Score=49.10  Aligned_cols=60  Identities=7%  Similarity=0.029  Sum_probs=42.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    ++..+.+..++++.++.|       .+.+. ..+++..    ..+++.|++|||++||+
T Consensus        49 ~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~gii  123 (350)
T cd05573          49 RAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHKLGFI  123 (350)
T ss_pred             HHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            5677777777766    445778888888888766       22211 1255553    78999999999999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=82.51  E-value=7.9  Score=30.67  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=42.7

Q ss_pred             ceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         140 RPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       140 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      ....+.||..+-.--.....+++|++|.+.+. -.+.....+.+||.|-..+      +.+.  .+.+.+++.++.+
T Consensus        38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~------~~~H--~~~N~e~~~~l~v  106 (125)
T PRK13290         38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYALDK------HDRH--YLRAGEDMRLVCV  106 (125)
T ss_pred             EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEECC------CCcE--EEEcCCCEEEEEE
Confidence            34577888755432222247999999999997 4323457899999875433      2333  3333477776665

>KOG0595|consensus

Probab=82.31  E-value=0.087  Score=49.53  Aligned_cols=80  Identities=10%  Similarity=0.082  Sum_probs=54.0

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC---
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS---  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~---  341 (361)
                      ..++|++ ++.+....++   ....|-.|++.+.++    +..-+.+..++|+.||.|       +++ ....++|+   
T Consensus        37 ~VAIK~i~~~~l~~k~~e---~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~-~~~~l~e~t~r  112 (429)
T KOG0595|consen   37 EVAIKCIAKKKLNKKLVE---LLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIR-RRGRLPEATAR  112 (429)
T ss_pred             eEEeeeehhhccCHHHHH---HHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHH-HcCCCCHHHHH
Confidence            4456666 4443322222   225677788888888    556778888999999999       333 11237777   


Q ss_pred             -ccceeehhhhhhhhccccC
Q psy9025         342 -FECQVTVHREDIHESHITS  360 (361)
Q Consensus       342 -~~a~v~~a~~~lH~~~i~~  360 (361)
                       |--++.-|+++||++|||-
T Consensus       113 ~Fm~QLA~alq~L~~~~IiH  132 (429)
T KOG0595|consen  113 HFMQQLASALQFLHENNIIH  132 (429)
T ss_pred             HHHHHHHHHHHHHHHCCeee
Confidence             3666777999999999973

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=82.11  E-value=0.08  Score=49.22  Aligned_cols=59  Identities=5%  Similarity=0.019  Sum_probs=40.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..++++    +...+.+..++|+.++.|       .+ .+..  +++.-    +..++.|++|||++||+
T Consensus        43 ~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~qi~~~L~~lH~~~iv  117 (323)
T cd05571          43 LTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV--FSEDRARFYGAEIVSALGYLHSCDVV  117 (323)
T ss_pred             HHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            4566677776666    334677778888888766       12 2122  44442    78899999999999986

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=82.10  E-value=0.084  Score=48.21  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..+++.++++    +...+.+..++|+.++.|       .+ +...  +.+..    +..++.|+.|||++||+
T Consensus        49 ~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~qi~~~l~~lH~~~i~  123 (291)
T cd05612          49 HNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGR--FSNSTGLFYASEIVCALEYLHSKEIV  123 (291)
T ss_pred             HHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            5667777777776    445777788888888765       12 2122  44442    78899999999999986

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0580|consensus

Probab=80.65  E-value=0.43  Score=42.03  Aligned_cols=99  Identities=6%  Similarity=-0.083  Sum_probs=70.8

Q ss_pred             cccccccccCCCCCCCC-----------CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccC
Q psy9025         260 DASSVLLDRKGEEPKQA-----------PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFH  323 (361)
Q Consensus       260 ~~~l~~~~~~~~~~~~~-----------~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~  323 (361)
                      +.|+.+..+.|.+..+.           .-++|-+ |.+|...+.+.++  ..|-.|-.++++|    +|.-|-|++=+|
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~ql--rREiEIqs~L~hpnilrlY~~fhd~~riy   98 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQL--RREIEIQSHLRHPNILRLYGYFHDSKRIY   98 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhh--hheeEeecccCCccHHhhhhheeccceeE
Confidence            45666667777654443           2245555 7777777777777  6777777778888    777888998888


Q ss_pred             chhhhh-------hhccCCCC-CCCCc----cceeehhhhhhhhccccC
Q psy9025         324 PKQQRR-------LLHQTPTG-HNNSF----ECQVTVHREDIHESHITS  360 (361)
Q Consensus       324 ~l~~~~-------~~~~~~~~-~~~~~----~a~v~~a~~~lH~~~i~~  360 (361)
                      ..+|..       .|...+.+ ++|..    ..++.-|+.|.|.++||-
T Consensus        99 LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIh  147 (281)
T KOG0580|consen   99 LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIH  147 (281)
T ss_pred             EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCccc
Confidence            887755       34433433 77774    788999999999999973

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=80.57  E-value=3.1  Score=29.50  Aligned_cols=42  Identities=21%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             eCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeec
Q psy9025         144 YLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFG  187 (361)
Q Consensus       144 ~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fG  187 (361)
                      ..||..-..-  ..+.+.+|++|.|.+...+.....+++||.|=
T Consensus        14 ~~pg~~~~~~--~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~   55 (74)
T PF05899_consen   14 CTPGKFPWPY--PEDEFFYVLEGEVTITDEDGETVTFKAGDAFF   55 (74)
T ss_dssp             EECEEEEEEE--SSEEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred             ECCceeEeeC--CCCEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence            3455533332  22788999999999997665668899999873

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
3etq_A	204	X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2		5e-18
3u0z_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		1e-17
3u11_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		2e-17
3otf_A	220	Structural Basis For The Camp-Dependent Gating In H		2e-17
4hbn_A	205	Crystal Structure Of The Human Hcn4 Channel C-termi		3e-17
3u10_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		9e-17
3ffq_A	202	Hcn2i 443-640 Apo-State Length = 202		1e-16
2q0a_A	200	Structure And Rearrangements In The Carboxy-Termina		1e-16
3bpz_A	202	Hcn2-I 443-460 E502k In The Presence Of Camp Length		1e-16
1q3e_A	207	Hcn2j 443-645 In The Presence Of Cgmp Length = 207		1e-16
1q43_A	207	Hcn2i 443-640 In The Presence Of Camp, Selenomethio		2e-15
2ptm_A	198	Structure And Rearrangements In The Carboxy-Termina		2e-11
3cl1_A	140	M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm		4e-09
2k0g_A	142	Solution Structure Of A Bacterial Cyclic Nucleotide		4e-09
1u12_A	138	M. Loti Cyclic Nucleotide Binding Domain Mutant Len		5e-09
1vp6_A	138	M.Loti Ion Channel Cylic Nucleotide Binding Domain		5e-09
3clp_A	140	M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L		3e-08
3beh_A	355	Structure Of A Bacterial Cyclic Nucleotide Regulate		3e-08
3co2_A	140	Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai		3e-08
3ukn_A	212	Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN		4e-08
3shr_A	299	Crystal Structure Of Cgmp-Dependent Protein Kinase		8e-06
4din_B	381	Novel Localization And Quaternary Structure Of The		1e-05
3ocp_A	139	Crystal Structure Of Camp Bound Cgmp-Dependent Prot		1e-04
3pvb_B	160	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		2e-04
3fhi_B	154	Crystal Structure Of A Complex Between The Catalyti		3e-04
1ne4_A	283	Crystal Structure Of Rp-Camp Binding R1a Subunit Of		3e-04
2qcs_B	291	A Complex Structure Between The Catalytic And Regul		3e-04
1rl3_A	288	Crystal Structure Of Camp-free R1a Subunit Of Pka L		4e-04
3r6s_A	247	Crystal Structure Of Glxr Transcription Factor From		5e-04
3i54_A	249	Crystal Structure Of Mtbcrp In Complex With Camp Le		6e-04
3mzh_A	225	Crystal Structure Of Camp Receptor Protein From Myc		6e-04
3d0s_A	227	Camp Receptor Protein From M.Tuberculosis, Camp-Fre		6e-04
3h3u_A	224	Crystal Structure Of Crp (Camp Receptor Protein) Fr		6e-04

>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVL 177
           ++ + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY ++ G V V++     
Sbjct: 76  VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 178 ATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
             L++GS FGEISLL      RRTA VR+  +S L+ L+ D+ NE +E YP
Sbjct: 136 MKLSDGSYFGEISLLT---RGRRTASVRADTYSRLYSLSVDNFNEVLEEYP 183

>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           +N + + L + + LF + D   +  ++ KLR  ++ PGDYI R+G VGK+MY ++ G   
Sbjct: 69  VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAG 128
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++  +    LT+GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 129 VITKSSKEMKLTDGSYFGEICLLT---KGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 184

>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           IN + + L + + LF + D   +  ++ KLR  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 69  INFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN 229
           V++       L +GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP 
Sbjct: 129 VLTKGNKETKLADGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 185
Query: 230 AQEVLKKKA 238
            +   +  A
Sbjct: 186 MRRAFETVA 194

>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           IN + + L + + LF + D   +  ++ KLR  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 63  INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 122
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L +GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 123 VLTKGNKETKLADGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 178

>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           IN + + L + + LF + D   +  ++ KLR  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 63  INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 122
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L +GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 123 VLTKGNKETKLADGSYFGEICLLT---RGRRTARVRADTYCRLYSLSVDNFNEVLEEYP 178

>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           +N + + L + + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 69  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L++GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 129 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 184

>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           +N + + L + + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L++GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 126 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181

>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           +N + + L + + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 64  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 123
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L++GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 124 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 179

>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           +N + + L + + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L++GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 126 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181

>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
           +N + + L + + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY ++ G V 
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
           V++       L++GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP
Sbjct: 126 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181

>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 123 LFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTE 182
           LF + D   +   + KL+  ++ PGDYI R+G +GK+ Y ++ G V V++       L++
Sbjct: 79  LFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEXKLSD 138
Query: 183 GSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKA 238
           GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE +E YP  +   +  A
Sbjct: 139 GSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPXXRRAFETVA 191

>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVL 177
           ++ V  F   D   +  +V  L   ++ P DY+ ++G  G  M+ ++ G V ++  + V+
Sbjct: 73  VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVI 132
Query: 178 AT-LTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKK 236
           AT L++GS FGEI LL      RR A V+   +  LF L+    N+ ++ +P  ++ +++
Sbjct: 133 ATSLSDGSYFGEICLLT---RERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEE 189
Query: 237 KA 238
            A
Sbjct: 190 IA 191

>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 13  QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++      R+A V +    +L  L+  D        P   E+ +
Sbjct: 73  V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 127
Query: 236 KKA 238
           K A
Sbjct: 128 KTA 130

>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 15  QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 74
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++      R+A V +    +L  L+  D        P   E+ +
Sbjct: 75  V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 129
Query: 236 KKA 238
           K A
Sbjct: 130 KTA 132

>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 11  QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 70
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++      R+A V +    +L  L+  D        P   E+ +
Sbjct: 71  V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125
Query: 236 KKA 238
           K A
Sbjct: 126 KTA 128

>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 11  QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 70
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++      R+A V +    +L  L+  D        P   E+ +
Sbjct: 71  V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125
Query: 236 KKA 238
           K A
Sbjct: 126 KTA 128

>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 13  QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++       +A V +    +L  L+  D        P   E+ +
Sbjct: 73  V--ELGPGAFFGEMALIS---GEPESATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 127
Query: 236 KKA 238
           K A
Sbjct: 128 KTA 130

>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 287
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++      R+A V +    +L  L+  D        P   E+ +
Sbjct: 288 V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 342
Query: 236 KKA 238
           K A
Sbjct: 343 KTA 345

>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +   
Sbjct: 13  QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           V   L  G+ FGE++L++       +A V +    +L  L+  D        P   E+ +
Sbjct: 73  V--ELGPGAFFGEMALIS---GEPWSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 127
Query: 236 KKA 238
           K A
Sbjct: 128 KTA 130

>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 107 TDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
            D+A++++ + L ++ LF+      LR L L ++     PG+++ R+G+  + +Y V +G
Sbjct: 67  ADIAMHLN-KELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSG 125
Query: 167 QVQVVSGETVLATLTEGSVFGEISLLA--LAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
            ++V+   TVLA L +G + G  SL    +  TN   A+V++  + +L  ++   L E +
Sbjct: 126 SMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTN---ANVKALTYCDLQYISLKGLREVL 182
Query: 225 EYYP 228
             YP
Sbjct: 183 RLYP 186

>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals Novel Site Of Interchain Communication Length = 299

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSG 173
           +++ L  V  FQ   E +L +L   L    Y  G+YI R+G  G   +I+  G+V V   
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214
Query: 174 ET------VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
           ++       L TL +G  FGE    AL G + RTA+V +       V+++D     I
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGE---KALQGEDVRTANVIAAEAVTCLVIDRDSFKHLI 268

>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri Beta Holoenzyme Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV-VSGE 174
           + +SK  LF   D+    ++   + PV ++ G+ + ++G  G   Y+V  G+V V V+GE
Sbjct: 130 KAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE 189
Query: 175 TVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
            V   ++EG  FGE++L  + GT  R A V++     L+ +++D
Sbjct: 190 WV-TNISEGGSFGELAL--IYGTP-RAATVKAKTDLKLWGIDRD 229

>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein Kinase(92-227) Length = 139

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISL 191
           ++E+V  + PV Y     I ++G+VG  +Y+++ G+V+V      L T+  G VFGE+++
Sbjct: 39  IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAI 98
Query: 192 LALAGTNRRTADVRS 206
           L       RTA V++
Sbjct: 99  LY---NCTRTATVKT 110

>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 160

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           + + K  LF   D+    ++   + PV ++ G+ + ++G+ G   Y++  G++ V     
Sbjct: 45  KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 104
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
              ++ EG  FGE++L  + GT  R A V++     L+ +++D
Sbjct: 105 WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 144

>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 154

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           + + K  LF   D+    ++   + PV ++ G+ + ++G+ G   Y++  G++ V     
Sbjct: 38  KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 97
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
              ++ EG  FGE++L  + GT  R A V++     L+ +++D
Sbjct: 98  WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 137

>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           + + K  LF   D+    ++   + PV ++ G+ + ++G+ G   Y++  G++ V     
Sbjct: 35  KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 94
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
              ++ EG  FGE++L  + GT  R A V++     L+ +++D
Sbjct: 95  WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 134

>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           + + K  LF   D+    ++   + PV ++ G+ + ++G+ G   Y++  G++ V     
Sbjct: 39  KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 98
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
              ++ EG  FGE++L  + GT  R A V++     L+ +++D
Sbjct: 99  WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 138

>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           + + K  LF   D+    ++   + PV ++ G+ + ++G+ G   Y++  G++ V     
Sbjct: 37  KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 96
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
              ++ EG  FGE++L  + GT  R A V++     L+ +++D
Sbjct: 97  WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 136

>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From Corynebacterium Glutamicum With Camp Length = 247

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
           + LS+  +FQ  D   +  L+  +  V +  G  I  +GE G  +YI+ +G+V++     
Sbjct: 26  EILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAP 85
Query: 172 -SGETVLATLTEGSVFGEISLL 192
              E +L  +    +FGE+S+ 
Sbjct: 86  DGRENLLTIMGPSDMFGELSIF 107

>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp Length = 249

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 112 NVHIQT-----LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
           N++ Q+     L++  +FQ  + + +  L  +L+PV +  G  +  +GE G  +YI+ +G
Sbjct: 19  NLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISG 78
Query: 167 QVQVV-----SGETVLATLTEGSVFGEISLL 192
           +V++        E +L  +    +FGE+S+ 
Sbjct: 79  KVKIGRRAPDGRENLLTIMGPSDMFGELSIF 109

>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From Mycobacterium Tuberculosis In Complex With Camp And Its Dna Binding Element Length = 225

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
           + L++  +FQ  + + +  L  +L+PV +  G  +  +GE G  +YI+ +G+V++     
Sbjct: 4   EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 63
Query: 172 -SGETVLATLTEGSVFGEISLL 192
              E +L  +    +FGE+S+ 
Sbjct: 64  DGRENLLTIMGPSDMFGELSIF 85

>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form Length = 227

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
           + L++  +FQ  + + +  L  +L+PV +  G  +  +GE G  +YI+ +G+V++     
Sbjct: 6   EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65
Query: 172 -SGETVLATLTEGSVFGEISLL 192
              E +L  +    +FGE+S+ 
Sbjct: 66  DGRENLLTIMGPSDMFGELSIF 87

>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From Mycoba Tuberculosis Length = 224

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
           + L++  +FQ  + + +  L  +L+PV +  G  +  +GE G  +YI+ +G+V++     
Sbjct: 3   EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 172 -SGETVLATLTEGSVFGEISLL 192
              E +L  +    +FGE+S+ 
Sbjct: 63  DGRENLLTIMGPSDMFGELSIF 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	9e-61
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	3e-58
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	6e-58
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	2e-54
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	8e-43
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	3e-37
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	2e-28
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	6e-27
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	6e-27
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	1e-24
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	7e-24
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-23
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	6e-21
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	3e-23
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	2e-22
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	1e-21
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	6e-18
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	2e-21
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	3e-21
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-20
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-18
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-15
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	3e-18
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	4e-18
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	4e-18
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	1e-17
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	2e-17
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	2e-17
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	8e-17
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	3e-17
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-17
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	5e-17
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	2e-16
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	2e-16
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	2e-16
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	2e-15
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	3e-15
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	4e-14
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	2e-13
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	1e-12
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	2e-12
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	3e-12
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	2e-11
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	3e-11
1ft9_A	222	Carbon monoxide oxidation system transcription reg	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	3e-10
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	2e-07
3b02_A	195	Transcriptional regulator, CRP family; structural	3e-07
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	4e-07
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	1e-04

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  191 bits (488), Expect = 9e-61
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 91  SEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYI 150
           S    K+L   P  ++ D+ ++++ +   +   F+   +  LR L ++ + V   PGD I
Sbjct: 2   SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61

Query: 151 CRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFS 210
              GE    +  V +G ++V+  + V+A L +G VFG++     A   +  A+VR+  + 
Sbjct: 62  YHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWK-EATLAQSCANVRALTYC 120

Query: 211 NLFVLNKDDLNEAIEYYPNAQEVLKKKAR 239
           +L V+ +D L + +E+Y        +   
Sbjct: 121 DLHVIKRDALQKVLEFYTAFSHSFSRNLI 149

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score =  186 bits (475), Expect = 3e-58
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 16/204 (7%)

Query: 48  RRERFIQERIRHLAHVFTERAQKI-----KRILDFPPTPSSSTTLSSSSEDENKILNNLP 102
            R ++ QE+ + +    +    K+     ++I D+               DE+ IL  L 
Sbjct: 7   SRRQY-QEKYKQVEQYMSFH--KLPADFRQKIHDY-----YEHRYQGKMFDEDSILGELN 58

Query: 103 LKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYI 162
             L+  +      + ++ + LF + D   +  ++ KL+  ++ PGDYI R+G +GK+MY 
Sbjct: 59  GPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYF 118

Query: 163 VKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNE 222
           ++ G V V++       L++GS FGEI LL      RRTA VR+  +  L+ L+ D+ NE
Sbjct: 119 IQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR---GRRTASVRADTYCRLYSLSVDNFNE 175

Query: 223 AIEYYPNAQEVLKKKARQLIKENA 246
            +E YP  +   +  A   +    
Sbjct: 176 VLEEYPMMRRAFETVAIDRLDRIG 199

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score =  185 bits (473), Expect = 6e-58
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 88  SSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPG 147
                DE  I   +   ++ DVA       ++ V  F   D   +  +V  L   ++ P 
Sbjct: 43  RGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPA 102

Query: 148 DYICRKGEVGKEMYIVKTGQVQVVS-GETVLATLTEGSVFGEISLLALAGTNRRTADVRS 206
           DY+ ++G  G  M+ ++ G V ++     +  +L++GS FGEI LL      RR A V+ 
Sbjct: 103 DYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLL---TRERRVASVKC 159

Query: 207 HGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK 243
             +  LF L+    N+ ++ +P  ++ +++ A + + 
Sbjct: 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  177 bits (451), Expect = 2e-54
 Identities = 38/153 (24%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 93  DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICR 152
           D +++L + P +L+ D+A++++ + L ++ LF+      LR L L ++     PG+++ R
Sbjct: 53  DVSELLKDFPDELRADIAMHLN-KELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIR 111

Query: 153 KGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNL 212
           +G+  + +Y V +G ++V+   TVLA L +G + G  SL       +  A+V++  + +L
Sbjct: 112 QGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLT-KEQVIKTNANVKALTYCDL 170

Query: 213 FVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN 245
             ++   L E +  YP   +    + +  +  N
Sbjct: 171 QYISLKGLREVLRLYPEYAQKFVSEIQHDLTYN 203

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score =  144 bits (365), Expect = 8e-43
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 117 TLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS---- 172
            + +V LF++ DE LL  +  +L+P L+    Y+ R+G+   EM  +  G+++ V+    
Sbjct: 7   GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66

Query: 173 --GETVLATLTEGSVFGEISLLALAGTN------RRTADVRSHGFSNLFVLNKDDLNEAI 224
             G    + L EG   G+  L               T  V++      F L  D+L    
Sbjct: 67  RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVA 126

Query: 225 EYYP 228
             + 
Sbjct: 127 SQFR 130

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score =  130 bits (328), Expect = 3e-37
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS 172
            + Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V +
Sbjct: 8   RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT 67

Query: 173 GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
                  L  G+ FGE++L+       R+A V +    +L  L+  D        P   E
Sbjct: 68  PNP--VELGPGAFFGEMALI---SGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAE 122

Query: 233 VLKKKARQLIKENAA 247
           + +K A +     A+
Sbjct: 123 IFRKTALERRGAAAS 137

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score =  107 bits (268), Expect = 2e-28
 Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 101 LPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEM 160
           LP   K+  + ++  + +      ++ + + ++E+V  + PV Y     I ++G+VG  +
Sbjct: 8   LPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLV 67

Query: 161 YIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTN-RRTADVRSHGFSNLFVLNKDD 219
           Y+++ G+V+V      L T+  G VFGE+++L     N  RTA V++     L+ +++  
Sbjct: 68  YVMEDGKVEVTKEGVKLCTMGPGKVFGELAIL----YNCTRTATVKTLVNVKLWAIDRQC 123

Query: 220 LNEAIEYYP 228
               +    
Sbjct: 124 FQTIMMRTG 132

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score =  104 bits (261), Expect = 6e-27
 Identities = 33/176 (18%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 95  NKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKG 154
             +  +L      D      ++ ++K++LF D     +R L   ++         +  +G
Sbjct: 18  QGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEG 77

Query: 155 EVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           + G  + ++ TG+V V+      G   +A +  G++ GE+S++       R+A   +   
Sbjct: 78  DPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMI---DGMPRSASCVASLP 134

Query: 210 SNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSVL 265
           ++  VL++D L + +   P   ++  K   +L++   AR R S  ++       ++
Sbjct: 135 TDFAVLSRDALYQLLANMP---KLGNKVLIRLLQLLTARFRESYDRILPKTLGELI 187

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score =  103 bits (258), Expect = 6e-27
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 85  TTLSSSSEDENKILN-NLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVL 143
             +S+    E    +    +  K    +    + + K  LF   D+    ++   + PV 
Sbjct: 6   GAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVS 65

Query: 144 YLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTN-RRTA 202
           ++ G+ + ++G+ G   Y++  G++ V        ++ EG  FGE++L+        R A
Sbjct: 66  FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALI----YGTPRAA 121

Query: 203 DVRSHGFSNLFVLNKDDLNEAIEYYP 228
            V++     L+ +++D     +    
Sbjct: 122 TVKAKTNVKLWGIDRDSYRRILMGST 147

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 9/128 (7%)

Query: 106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKT 165
           KTD   N   +    + LF++ D   + +++  +   L   G+++  +G+ G   Y++  
Sbjct: 28  KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 87

Query: 166 GQVQVV----SGETVLATLTEGSVFGEISLLALAGTN-RRTADVRSHGFSNLFVLNKDDL 220
           G   +          +        FGE++L+     N  R A + +     L+ L++   
Sbjct: 88  GTFDIYVKCDGVGRCVGNYDNRGSFGELALM----YNTPRAATITATSPGALWGLDRVTF 143

Query: 221 NEAIEYYP 228
              I    
Sbjct: 144 RRIIVKNN 151

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 94.7 bits (236), Expect = 7e-24
 Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV- 171
           +  + L   + F    +  L+++ L      +  G  I ++      + ++  G V++  
Sbjct: 3   ISPERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFY 62

Query: 172 -------SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
                  +  + + ++  G++FG  SL+        T+  R+     +  +N   L E  
Sbjct: 63  SNGGAGSAANSTVCSVVPGAIFGVSSLI---KPYHYTSSARATKPVRVVDINGARLREMS 119

Query: 225 EYYPN-AQEVLKKKARQL 241
           E      Q ++   A  +
Sbjct: 120 ENNQALGQVLMNNVAAAV 137

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 96.8 bits (241), Expect = 1e-23
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-S 172
           +   L  + + +        +L   L   +Y PG+ I R+G+ G+  Y+++ G V V   
Sbjct: 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKK 182

Query: 173 GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
           G+ V+  L +   FGE++LL       R A V +   + +  L K      +     A +
Sbjct: 183 GQGVINKLKDHDYFGEVALL---NDLPRQATVTATKRTKVATLGKSGFQRLL---GPAVD 236

Query: 233 VLKK 236
           VLK 
Sbjct: 237 VLKL 240

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 89.5 bits (222), Expect = 6e-21
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
           +++    LF   D    R ++  L       G  I ++G+ G   Y+V+ G V     + 
Sbjct: 7   KSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN 66

Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN 229
            + +   GS FGE   LAL   + R A V +     L+ L++    + +     
Sbjct: 67  KVNSSGPGSSFGE---LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSF 117

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 18/153 (11%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSG---- 173
           L +  LF   D+    EL   +  V    GD +  +G+ G  +Y+V  G+V++       
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 174 -ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
            E +LA +    + GE+SL        RTA   +     L  L   DL   +   P    
Sbjct: 67  RENMLAVVGPSELIGELSLF---DPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEV-- 121

Query: 233 VLKKKARQLIKENAARERVSQPK---LSTMDAS 262
                A  L++  A R R +      L   D S
Sbjct: 122 -----ATALLRAVARRLRKTNDAMSDLVFSDGS 149

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS 172
           VH Q L    LF+      L+EL+     V    G Y+ R+GE     Y + +G V++  
Sbjct: 9   VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 68

Query: 173 G-----ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY 227
                 E +L    E + F E  +     T    A  ++   S LF  +       ++  
Sbjct: 69  LTPEGQEKILEVTNERNTFAEAMM--FMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDN 126

Query: 228 PNAQEVLKKKARQLIKENAARERVSQPKLSTM 259
                     A  L+ + + R      ++ T+
Sbjct: 127 TPL-------ALALLAKLSTRLHQRIDEIETL 151

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 95.0 bits (235), Expect = 1e-21
 Identities = 39/196 (19%), Positives = 75/196 (38%), Gaps = 12/196 (6%)

Query: 78  PPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVL 137
            P  ++    S SS +    L+  PL+ ++   +++    L  V+ F+     LLR++ L
Sbjct: 5   IPMVAAHAAHSQSSAEWIACLDKRPLE-RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL 63

Query: 138 KLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET-------VLATLTEGSVFGEIS 190
                    G  + R+G++G   Y V  G + V   ET        + TL  G+ FGE  
Sbjct: 64  CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-- 121

Query: 191 LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARER 250
             ++     R A + +   S L  + ++D     E Y      L      +++  +  +R
Sbjct: 122 --SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVMETGSNNDR 179

Query: 251 VSQPKLSTMDASSVLL 266
           +   +    +      
Sbjct: 180 IPDKENVPSEKILRAG 195

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 83.8 bits (206), Expect = 6e-18
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 23  EQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPS 82
            Q  G  +  +++    H       + +      +           ++ K+  D     +
Sbjct: 244 TQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDT 303

Query: 83  SSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPV 142
                    +   +++   P   +T   + +    L  ++        + REL   L   
Sbjct: 304 MLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFE 363

Query: 143 LYLPGD-YICRKGEVGKEMYIVKTGQVQV-VSGETVLATLTEGSVFGEISLLALAGTNRR 200
            +  G   +  +GE G   YI+  G V V + G+ V+ TL EG  FG+++L+       R
Sbjct: 364 SHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALV---NDAPR 420

Query: 201 TADVRSH-GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKAR 239
            A +       +   ++K+D N  +         LK+  +
Sbjct: 421 AASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQ 460

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLY-LPGDYICRKGEVGKEMYIVK 164
             D  I   ++ + ++  F +   ++ REL   +   +    G  I   G+     Y++ 
Sbjct: 6   SGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVIL 65

Query: 165 TGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRS-HGFSNLFVLNKDDLNE 222
            G V++   +  +  L  G+ FG    L           VR+         + + D   
Sbjct: 66  NGTVEISHPDGKVENLFMGNSFGITPTL---DKQYMHGIVRTKVDDCQFVCIAQQDYWR 121

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 91.9 bits (228), Expect = 3e-21
 Identities = 29/143 (20%), Positives = 66/143 (46%), Gaps = 3/143 (2%)

Query: 89  SSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGD 148
            +S +    +       K++ + ++  + +      ++ + + ++E+V  + PV Y    
Sbjct: 12  MASIEGRGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDS 71

Query: 149 YICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG 208
            I ++G+VG  +Y+++ G+V+V      L T+  G VFGE   LA+     RTA V++  
Sbjct: 72  CIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGE---LAILYNCTRTATVKTLV 128

Query: 209 FSNLFVLNKDDLNEAIEYYPNAQ 231
              L+ +++      +      +
Sbjct: 129 NVKLWAIDRQCFQTIMMRTGLIK 151

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 89.6 bits (222), Expect = 1e-20
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-- 171
           +++ L  V  FQ   E +L +L   L    Y  G+YI R+G  G   +I+  G+V V   
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214

Query: 172 ----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY 227
                    L TL +G  FGE +L    G + RTA+V +       V+++D     I   
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGEKALQ---GEDVRTANVIAAEAVTCLVIDRDSFKHLIGGL 271

Query: 228 PNAQEVLKKKARQLIKENA 246
            +      + A    K  A
Sbjct: 272 DDVSNKAYEDAEAKAKYEA 290

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS 172
           ++ + LSKV + +  D+     +   L PV +  G  I  +GE G E +I+  G   V+ 
Sbjct: 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 213

Query: 173 G------ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEY 226
                     +  L     FGEI+LL       + A V + G      L++      +  
Sbjct: 214 RRSENEEFVEVGRLGPSDYFGEIALL---MNRPKAATVVARGPLKCVKLDRPRFERVLG- 269

Query: 227 YPNAQEVLKKKARQLIK 243
                ++LK+  +Q   
Sbjct: 270 --PCSDILKRNIQQYNS 284

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 75.4 bits (185), Expect = 1e-15
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 85  TTLSSSSEDENKILN-NLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVL 143
             +S+    E    +    +  K    +    + + K  LF   D+    ++   + PV 
Sbjct: 7   GAISAEVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVS 66

Query: 144 YLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTAD 203
           ++ G+ + ++G+ G   Y++  G++ V        ++ EG  FGE   LAL     R A 
Sbjct: 67  FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGE---LALIYGTPRAAT 123

Query: 204 VRSHGFSNLFVLNKDDLNEAIEYYPNAQ 231
           V++     L+ +++D     +      +
Sbjct: 124 VKAKTNVKLWGIDRDSYRRILMGSTLRK 151

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSG 173
           + Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V + 
Sbjct: 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 285

Query: 174 ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEV 233
             V   L  G+ FGE++L+       R+A V +    +L  L+  D        P   E+
Sbjct: 286 NPV--ELGPGAFFGEMALI---SGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEI 340

Query: 234 LKKKARQLIKENA 246
            +K A +     A
Sbjct: 341 FRKTALERRGAAA 353

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 83.2 bits (205), Expect = 4e-18
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV 171
              ++ L+ + +FQ C    L  L   ++P+    G  + R+GE      ++ +G  +V 
Sbjct: 9   GARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVS 68

Query: 172 ----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY 227
                G  ++A    G + GEI+LL     + R+A V +      +   +      +   
Sbjct: 69  HVGDDGVAIIARALPGMIVGEIALLR---DSPRSATVTTIEPLTGWTGGRGAFATMVHIP 125

Query: 228 PNAQEVLKKKARQ 240
              + +L+   ++
Sbjct: 126 GVGERLLRTARQR 138

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 24/183 (13%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-- 171
            +  L +  LFQ+  E  +RE +  +    + P + +  +   G+ +++V TG V+V   
Sbjct: 4   RLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRV 63

Query: 172 --SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
              G E VL  +    V GE ++L       R+A VR+       +L+++     +  +P
Sbjct: 64  SLGGRERVLGDIYAPGVVGETAVL---AHQERSASVRALTPVRTLMLHREHFELILRRHP 120

Query: 229 NAQEVLKKKARQLIKENAARERVSQPKLSTMDASSV---------LLDRKGEEPKQAPKL 279
                       L +  A R      +L     ++          L  ++       P++
Sbjct: 121 RV-------LWNLAEMLARRVTFLNDELIAFGQNTEAALTHVFANLYRQRLAAGVPQPEV 173

Query: 280 LPI 282
           LP+
Sbjct: 174 LPL 176

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 15/154 (9%)

Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
           + L++  +FQ  + + +  L  +L+PV +  G  +  +GE G  +YI+ +G+V++     
Sbjct: 6   EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65

Query: 172 SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA 230
            G E +L  +    +FGE+S+        RT+   +        +++D L   I   P  
Sbjct: 66  DGRENLLTIMGPSDMFGELSIF---DPGPRTSSATTITEVRAVSMDRDALRSWIADRPEI 122

Query: 231 QEVLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                  + QL++  A R R +   L+ +  + V
Sbjct: 123 -------SEQLLRVLARRLRRTNNNLADLIFTDV 149

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 24/184 (13%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-- 171
            +  +  + L +   +  L   +       Y     +  +GE  + +Y +  G V V+  
Sbjct: 44  AMADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK 103

Query: 172 --SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
              G E +L+ L +G   GE+ L        R+A VR+     +  ++     + I+  P
Sbjct: 104 DEEGKEMILSYLNQGDFIGELGL--FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNP 161

Query: 229 NAQEVLKKKARQLIKENAARERVSQPKLSTMDASSV----------LLDRKGEEPKQAPK 278
           +          +L  + A R +V+  K+  +    V          L  +          
Sbjct: 162 DI-------LMRLSAQMARRLQVTSEKVGNLAFLLVTGRIAQTLLNLAKQPDAMTHPDGM 214

Query: 279 LLPI 282
            + I
Sbjct: 215 QIKI 218

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 81.7 bits (201), Expect = 2e-17
 Identities = 21/142 (14%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-- 171
           +   +  +   +  + +   ++V  +   +Y  G+ I  +G++    +IV++G+V++   
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK 324

Query: 172 ---------SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNE 222
                    +G   +A    G  FGE++L+       R A   + G      ++      
Sbjct: 325 RKGKSEVEENGAVEIARCFRGQYFGELALV---TNKPRAASAHAIGTVKCLAMDVQAFER 381

Query: 223 AIEYYPNAQEVLKKKARQLIKE 244
            +       E++K+      ++
Sbjct: 382 LLGPCM---EIMKRNIATYEEQ 400

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 80.2 bits (197), Expect = 8e-17
 Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 12/225 (5%)

Query: 16  LRKESVPEQVRGDIESGVDEDEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRIL 75
            ++       R   E     D           +   F +E +R  +    E         
Sbjct: 40  QQENERKGAARFGHEGRTWGDAGAAAGGGIPSKGVNFAEEPMRSDSENGEEEEAAEAGAF 99

Query: 76  DFPPTPSSSTTLSSSSE-----DENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEA 130
           + P     +   S  +E     +E     +  +  KTD   N   +    + LF++ D  
Sbjct: 100 NAPVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPE 159

Query: 131 LLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVF 186
            + +++  +   L   G+++  +G+ G   Y++  G   +          +        F
Sbjct: 160 QMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF 219

Query: 187 GEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ 231
           GE   LAL     + A + +     L+ L++      I      +
Sbjct: 220 GE---LALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 15/152 (9%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG 173
           +    LF       +   +   +  LY  G  I  +G++G+ +Y+V +G+V++      G
Sbjct: 1   MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 174 -ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
            E  LA L  G +FGE+SLL       R+A   +   + L  L ++D    I   P    
Sbjct: 61  QERTLALLGPGELFGEMSLL---DEGERSASAVAVEDTELLALFREDYLALIRRLPLV-- 115

Query: 233 VLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                A  L    A R R +  +L  +     
Sbjct: 116 -----AHNLAALLARRLREADLELDLLSFEEA 142

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 81.3 bits (200), Expect = 3e-17
 Identities = 37/202 (18%), Positives = 76/202 (37%), Gaps = 9/202 (4%)

Query: 36  DEEYHDSDSEKERRERFIQERIRHLAHVFTERAQKIKRILDFPPTPSSS-----TTLSSS 90
           +          E+ E+    +I       ++     + +   PP P          +S+ 
Sbjct: 44  ERPMKFLREHFEKLEKEENRQILARQKSNSQSDSHDEEVSPTPPNPVVKARRRRGGVSAE 103

Query: 91  SEDENKILN-NLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDY 149
              E   ++    +  K    +    + +SK  LF   D+    ++   + PV ++ G+ 
Sbjct: 104 VYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGET 163

Query: 150 ICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGF 209
           + ++G  G   Y+V  G+V V      +  ++EG  FGE   LAL     R A V++   
Sbjct: 164 VIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGE---LALIYGTPRAATVKAKTD 220

Query: 210 SNLFVLNKDDLNEAIEYYPNAQ 231
             L+ +++D     +      +
Sbjct: 221 LKLWGIDRDSYRRILMGSTLRK 242

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 80.5 bits (198), Expect = 5e-17
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 103 LKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYI 162
           L   T     ++ + LSKV + +  ++     +   L PV +  G+ I  +GE G + YI
Sbjct: 235 LMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYI 294

Query: 163 VKTGQVQVVSG------ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLN 216
           +  G   V+           +  L     FGEI+LL       R A V + G      L+
Sbjct: 295 ITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALL---LNRPRAATVVARGPLKCVKLD 351

Query: 217 KDDLNEAIEYYPNAQEVLKKKARQ 240
           +      +       E+LK+  ++
Sbjct: 352 RPRFERVLG---PCSEILKRNIQR 372

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV 171
            VH Q L    LF+      L+EL+     V    G Y+ R+GE     Y + +G V++ 
Sbjct: 5   RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIY 64

Query: 172 ----SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEY 226
                G E +L    E + F E  +     T    A  ++   S LF  +       ++ 
Sbjct: 65  RLTPEGQEKILEVTNERNTFAEAMM--FMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQD 122

Query: 227 YPNAQEVLKKKARQLIKENAARERVSQPK---LSTMDAS----SVLLDRKGEEPKQAPKL 279
                      A  L+ + + R      +   LS  +A+      LL      P +  ++
Sbjct: 123 NTPL-------ALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRV 175

Query: 280 -LPI 282
            +P+
Sbjct: 176 EIPV 179

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 25/186 (13%), Positives = 57/186 (30%), Gaps = 25/186 (13%)

Query: 114 HIQTLSKVQLFQDCDEALLRELV--LKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV 171
              TL ++ LFQ         ++  +KL  + +  G+ I + G    ++  +  G++ +V
Sbjct: 16  MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 172 ----SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEY 226
                   TV+  +    +    SL          +   +H   +   ++K  +   +  
Sbjct: 76  TNAKENIYTVIEQIEAPYLIEPQSL--FGMNTNYASSYVAHTEVHTVCISKAFVLSDLFR 133

Query: 227 YPNAQEVLKKKARQLIKENAARERVSQPKLSTMDASSV-------LLDRKGEEPKQAPKL 279
           Y              +   + R +    +L       +        L    +   Q  K 
Sbjct: 134 YDIF-------RLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEK--PQGEKT 184

Query: 280 LPIVMQ 285
             + M 
Sbjct: 185 FKVKMD 190

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 15/152 (9%), Positives = 54/152 (35%), Gaps = 14/152 (9%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG 173
           +   ++        L++L+   + +++  G+ +  + +  +++ I+  G ++      +G
Sbjct: 1   MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 174 -ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
               +  +    +     +   +   R   +V +   S +  + K+   + +        
Sbjct: 61  KTLEIDEIKPVQIIASGFI--FSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDREL-- 116

Query: 233 VLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                    +K+ +   RV   KL  +   ++
Sbjct: 117 -----LLFFLKDVSEHFRVVSEKLFFLTTKTL 143

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 24/177 (13%)

Query: 121 VQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG-ET 175
           + L +   +  L   +       Y     +  +GE  + +Y +  G V V+     G E 
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           +L+ L +G   GE+ L        R+A VR+     +  ++     + I+  P+      
Sbjct: 61  ILSYLNQGDFIGELGL--FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDI----- 113

Query: 236 KKARQLIKENAARERVSQPKLSTMDASSV----------LLDRKGEEPKQAPKLLPI 282
               +L  + A R +V+  K+  +    V          L  +           + I
Sbjct: 114 --LMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI 168

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 27/195 (13%)

Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-- 171
                    L +   E  +  L+ +     Y  G+ +  + E  + +++V  G V++   
Sbjct: 9   QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRM 68

Query: 172 --SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
             +G E V++  T G  FGE   L             +     +  +        +   P
Sbjct: 69  TPTGSEAVVSVFTRGESFGEAVAL---RNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDP 125

Query: 229 NAQEVLKKKARQLIKENAARERVSQPK---LSTMDAS----SVLLDRKGEEPKQAPKLLP 281
                       ++            +   L     +      LL+    +       LP
Sbjct: 126 EI-------CISILATTFGHLHSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLP 178

Query: 282 IVMQVVPQNSMASKL 296
                  +  +A +L
Sbjct: 179 Y-----DKMLIAGRL 188

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 12/153 (7%)

Query: 117 TLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----S 172
           T+         D   +   +       Y     + R G+    +Y V +G V ++     
Sbjct: 12  TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDD 71

Query: 173 G-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ 231
             E VL     G   GE+ L     ++ R   +R+     L  ++ + L +  +   +  
Sbjct: 72  DRELVLGYFGSGEFVGEMGL--FIESDTREVILRTRTQCELAEISYERLQQLFQ--TSLS 127

Query: 232 EVLKKKARQLIKENAARERVSQPK---LSTMDA 261
               +    +  + + R   +  K   L+ +D 
Sbjct: 128 PDAPRILYAIGVQLSKRLLDTTRKASRLAFLDV 160

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 128 DEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG-ETVLATLTE 182
               L +L+       Y     I   G+  + ++ +  G V ++     G E ++  L  
Sbjct: 2   KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 61

Query: 183 GSVFGEISLLA-LAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQL 241
           G  FGE+ L         R+A VR+     +  ++     E  +               L
Sbjct: 62  GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEI-------LYTL 114

Query: 242 IKENAARERVSQPK---LSTMDASS 263
             + A R R +  K   L+ +D + 
Sbjct: 115 GSQMADRLRKTTRKVGDLAFLDVTG 139

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 19/177 (10%), Positives = 57/177 (32%), Gaps = 25/177 (14%)

Query: 121 VQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG-ET 175
             ++   +E     L  +++P        +  +G++   ++ +  G+++++     G   
Sbjct: 15  RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74

Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
           +   +  G  FG             ++   +   S +  +  + +   ++   +      
Sbjct: 75  ISRIVKPGQFFGMRPYF---AEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSF----- 126

Query: 236 KKARQLIKENAARERVSQPK---LSTMDAS----SVLL---DRKGEEPKQAPKLLPI 282
              R  +K  A     ++ +   L+           LL   +  G E   A   + +
Sbjct: 127 --CRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYL 181

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 19/154 (12%), Positives = 48/154 (31%), Gaps = 23/154 (14%)

Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---S 172
             L+   L +  +      ++ + R   Y     +         +++VK+G+V+V     
Sbjct: 4   MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYE 63

Query: 173 G-ETVLATLTEGSVFGEISLL-ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA 230
             E  LA L  G +F   +     A  +           + +   +  +    +  +P  
Sbjct: 64  DKEFTLAILEAGDIFCTHTRAFIQAMED-----------TTILYTDIRNFQNIVVEFPAF 112

Query: 231 QEVLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                  +  ++K      + S   ++ +     
Sbjct: 113 -------SLNMVKVLGDLLKNSLTIINGLVFKDA 139

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 18/152 (11%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG 173
              +          LR          +  G  +   GE    M  +  G++++      G
Sbjct: 11  CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDG 70

Query: 174 -ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
            E +L      S+ G++                +   +     ++  L        +   
Sbjct: 71  SEKLLYYAGGNSLIGKLYPT------GNNIYATAMEPTRTCWFSEKSLRTVFRTDEDM-- 122

Query: 233 VLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                  ++ K    +      +++ M+  + 
Sbjct: 123 -----IFEIFKNYLTKVAYYARQVAEMNTYNP 149

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
           Q  +   +F+         +V             I   G+  + +Y +  G V++     
Sbjct: 25  QDKALANVFRQMATGAFPPVVETFER-----NKTIFFPGDPAERVYFLLKGAVKLSRVYE 79

Query: 172 SG-ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA 230
           +G E  +A L E SVFG +SLL     + R     +     L     + + +A++  P  
Sbjct: 80  AGEEITVALLRENSVFGVLSLLT-GNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPEL 138

Query: 231 QEVLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                  +  +++  ++R   ++  + T+    +
Sbjct: 139 -------SMLMLRGLSSRILQTEMMIETLAHRDM 165

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 11/146 (7%)

Query: 115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV--- 171
           +   +   L+ D + A  + +   L       G  I         + +VK+GQ++     
Sbjct: 2   MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 172 -SG-ETVLATLTEG--SVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY 227
             G E  L  L +    +     ++    + +    + +   ++L+++  +     ++  
Sbjct: 62  DEGREITLYRLFDMDMCLLSASCIM---RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDS 118

Query: 228 PN-AQEVLKKKARQLIKENAARERVS 252
              A    +  A +        E++ 
Sbjct: 119 APVANYTNELMATRFSDVMWLIEQIM 144

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 23/152 (15%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS----G 173
             +  +                R  ++  G  +C        +++V  G+++V       
Sbjct: 2   PPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEER 61

Query: 174 ETVLATLTEGSVFGEISLL-ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
           E  L  LT G +F   S     A              + +   +     + ++  P+   
Sbjct: 62  EISLFYLTSGDMFCMHSGCLVEATER-----------TEVRFADIRTFEQKLQTCPSM-- 108

Query: 233 VLKKKARQLIKENAARERVSQPKLSTMDASSV 264
                A  LI             +  +    +
Sbjct: 109 -----AWGLIAILGRALTSCMRTIEDLMFHDI 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 59/407 (14%), Positives = 112/407 (27%), Gaps = 129/407 (31%)

Query: 28  DIESGVDEDEEYHD---SDSEKERRERFI------QERIRHLAHVFTERAQKI------K 72
           D+   +   EE      S        R        QE +      F E   +I       
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLRINYKFLMS 96

Query: 73  RILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALL 132
            I      PS  T +     D  ++ N+  +  K +V         S++Q +       L
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNV---------SRLQPYLK-----L 140

Query: 133 RELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLT----------E 182
           R+ +L+LRP        +   G +G              SG+T +A             +
Sbjct: 141 RQALLELRP-----AKNVLIDGVLG--------------SGKTWVALDVCLSYKVQCKMD 181

Query: 183 GSVF----GEIS--------LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEY---- 226
             +F       +        L  L          RS   SN+  L    +   +      
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKS 240

Query: 227 --YPNA---------QEVLKK---KARQLI----KENAARERVSQPK-LSTMDASSVLLD 267
             Y N           +         + L+    K+       +    +S    S  L  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 268 RKGEE-------------PKQAPKLLPIVMQVVPQNSMASKLLRCGSKSLNKRPHRRVNR 314
            + +              P++     P  +      S+ ++ +R G  + +   H   ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNWKHVNCDK 354

Query: 315 SASADTYFHPKQQRRLLHQTPTGHNNSFECQVTVHREDIHESHITSE 361
             +         +  L    P  +   F+ +++V        HI + 
Sbjct: 355 LTTI-------IESSLNVLEPAEYRKMFD-RLSVFPPSA---HIPTI 390

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 13/146 (8%), Positives = 41/146 (28%), Gaps = 15/146 (10%)

Query: 126 DCDEALLRELVLK--LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SG-ETVLA 178
           +      ++ +    ++P  +   + I  + +  +    +  G  ++     +G    L 
Sbjct: 3   NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQ 62

Query: 179 TLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKA 238
                 V     +           +V S   +  +V+  ++L E +              
Sbjct: 63  YYKGAFVIMSGFIDTETSVGYYNLEVISEQ-ATAYVIKINELKELLSKNLTH-------F 114

Query: 239 RQLIKENAARERVSQPKLSTMDASSV 264
             + +    +   S  K +    +  
Sbjct: 115 FYVFQTLQKQVSYSLAKFNDFSINGK 140

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 35/165 (21%)

Query: 135 LVLKLRPVLYLPGDYICRKGEVGK--EMYIVKTGQVQVV----SG-ETVLATLTEGSVFG 187
           +      V +  GD I   G  G     Y V  G V++      G    L  +  G  FG
Sbjct: 1   MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFG 60

Query: 188 EISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA 247
           E +L        R     +     L  L ++   E                + L +  + 
Sbjct: 61  EEALF----GQERIYFAEAATDVRLEPLPENPDPEL--------------LKDLAQHLSQ 102

Query: 248 RERVSQPK---LSTMDAS----SVLL---DRKGEEPKQAPKLLPI 282
               +  +   L+T        + LL   +      ++   +L  
Sbjct: 103 GLAEAYRRIERLATQRLKNRMAAALLELSETPLAHEEEGKVVLKA 147

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 26/151 (17%)

Query: 144 YLPGDYICRKGEVGKEMYIVKTGQVQVV----SG-ETVLATLTEGSVFGEISLLALAGTN 198
           +   + I  +GE  + +Y ++ G V+VV     G    L  +  G  FGE +L       
Sbjct: 4   FARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALE----GK 59

Query: 199 RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPKLST 258
                  +   + +  L    ++           V +  ARQ+      +   +   L T
Sbjct: 60  AYRYTAEAMTEAVVQGLEPRAMDHEA-----LHRVARNLARQM---RRVQAYEAH--LQT 109

Query: 259 MDAS----SVLL---DRKGEEPKQAPKLLPI 282
            +        LL   D       +    + +
Sbjct: 110 GELRARIARYLLFLADTPLSARDRQGIYVTV 140

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 88  SSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPG 147
           S SS +    L+  PL+ ++   +++    L  V+ F+     LLR++ L         G
Sbjct: 15  SQSSAEWIACLDKRPLE-RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKG 73

Query: 148 DYICRKGEVGKEMYIVKTGQVQVVSGET-------VLATLTEGSVFGEISLLALAGTNRR 200
             + R+G++G   Y V  G + V   ET        + TL  G+ FGE    ++     R
Sbjct: 74  ITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE----SILDNTPR 129

Query: 201 TADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVSQPK 255
            A + +   S L  + ++D     E Y      L      +++  +  +R+   +
Sbjct: 130 HATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVMETGSNNDRIPDKE 184

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 15/149 (10%), Positives = 39/149 (26%), Gaps = 11/149 (7%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS----- 172
           ++ ++ F    +     L    +       + + + GE+ +  Y V  G +++       
Sbjct: 9   INHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKG 68

Query: 173 GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE 232
            E       E     +    A          ++S     L  +   +     E  P  + 
Sbjct: 69  IEQTTQFAIENWWLSDYM--AFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALER 126

Query: 233 VLKKKARQLIKENAARERVSQPKLSTMDA 261
             +   ++       R +           
Sbjct: 127 YFRLVYQKSFAAAQLRSKF----QHMYSK 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.97
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.97
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.97
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.91
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.87
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.86
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.86
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.85
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.85
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.84
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.82
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.82
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.82
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.82
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.82
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.81
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.81
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.8
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.8
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.8
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.79
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.79
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.78
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.78
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.78
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.77
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.76
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.76
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.75
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.75
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.75
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.75
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.74
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.74
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.72
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.72
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.72
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.72
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.71
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.7
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.7
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.7
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.69
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.69
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.69
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.64
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.64
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.63
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.59
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.57
3b02_A	195	Transcriptional regulator, CRP family; structural	99.52
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.42
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	96.72
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	95.46
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	95.34
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	94.69
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	94.67
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	94.2
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	93.68
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	93.3
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	92.84
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	91.4
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	91.31
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	90.91
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	90.49
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	90.4
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	90.15
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	90.1
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	88.6
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	88.53
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	88.19
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	88.17
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	87.44
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	87.32
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	87.29
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	86.85
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	86.47
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	86.39
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	86.33
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	86.27
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	85.75
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	84.93
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	84.71
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	83.73
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	83.56
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	82.68
4aoj_A	329	High affinity nerve growth factor receptor; transf	81.6
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	81.41
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	81.37
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	81.15
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	80.93
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	80.65
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	80.49

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.97  E-value=2.3e-31  Score=232.41  Aligned_cols=193  Identities=21%  Similarity=0.399  Sum_probs=165.0

Q ss_pred             HHHHhhhhhhcccchHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHhCCCCCCCCCcCCCCcccHHHHHhhCCH
Q psy9025          30 ESGVDEDEEYHDSDSEKERRERFIQERIRHL------AHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPL  103 (361)
Q Consensus        30 ~s~~~~~~~~~~~~~~~~~~~~~~q~~~~~~------~~~~~~l~~~i~~y~~~~~~~~~~~~~~~~~~~e~~ll~~lp~  103 (361)
                      |+++.++++....          +++++..+      +++|.+++.+|++||+|.|.       .+++.+++++++.||+
T Consensus         1 g~ii~~~~~~~~~----------~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~-------~~~~~~~~~il~~Lp~   63 (212)
T 3ukn_A            1 GAMDQRMYSRRSL----------YHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWS-------VNNGIDVSELLKDFPD   63 (212)
T ss_dssp             -----------CH----------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC-------TGGGCCCCCTTTTSCH
T ss_pred             ChHHHHHHHHHHH----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHcCH
Confidence            4567777777777          44444444      34788999999999999998       6677888999999999


Q ss_pred             hHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCC
Q psy9025         104 KLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEG  183 (361)
Q Consensus       104 ~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G  183 (361)
                      .||.++..+++..++ ++|+|++++++++..++..++...|.||++|+++|++++.+|||.+|.|+++.++.++..+++|
T Consensus        64 ~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G  142 (212)
T 3ukn_A           64 ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKG  142 (212)
T ss_dssp             HHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTT
T ss_pred             HHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCC
Confidence            999999999887776 8999999999999999999999999999999999999999999999999999777889999999


Q ss_pred             CeechhhhhcccCCC--ceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q psy9025         184 SVFGEISLLALAGTN--RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK  243 (361)
Q Consensus       184 d~fGe~~ll~~~~~~--~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~  243 (361)
                      ++||+.+++.   +.  ++.++++|.++|+++.|++++|..++..+|++...+.+.+.+++.
T Consensus       143 ~~fGe~~~~~---~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~  201 (212)
T 3ukn_A          143 DLIGSDSLTK---EQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLT  201 (212)
T ss_dssp             CEEECSCCSS---SSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEE
T ss_pred             CCcCcHHhcc---CCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhc
Confidence            9999999998   66  999999999999999999999999999999999888877776643

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.97  E-value=1.7e-30  Score=225.23  Aligned_cols=175  Identities=30%  Similarity=0.497  Sum_probs=161.1

Q ss_pred             HHhhHHHHHHHHHHHhCCCCCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcc
Q psy9025          61 AHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLR  140 (361)
Q Consensus        61 ~~~~~~l~~~i~~y~~~~~~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~  140 (361)
                      +++|.+++.+|++|++|.|.        ++.++++++++.||+.||.++..+.+.++|+++|+|.+++++++..|+..++
T Consensus        25 ~~i~~~l~~rv~~y~~~~~~--------~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~   96 (202)
T 3bpz_A           25 HKLPADFRQKIHDYYEHRYQ--------GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLK   96 (202)
T ss_dssp             TTCCHHHHHHHHHHHHHHHT--------TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCE
T ss_pred             cCCCHHHHHHHHHHHHHHHh--------ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCC
Confidence            35788999999999999995        3578999999999999999999999999999999999999999999999999


Q ss_pred             eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHH
Q psy9025         141 PVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDL  220 (361)
Q Consensus       141 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f  220 (361)
                      ...|.||++|+++|++++.+|||.+|.|+++..+.....+++|++||+.+++.   +.++.++++|.++|+++.|++++|
T Consensus        97 ~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~---~~~~~~~v~a~~~~~l~~i~~~~f  173 (202)
T 3bpz_A           97 FEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNF  173 (202)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHH---CSBCSSEEEESSCEEEEEEEHHHH
T ss_pred             ceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhc---CCCcccEEEEeeEEEEEEEEHHHH
Confidence            99999999999999999999999999999984332334689999999999998   889999999999999999999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         221 NEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       221 ~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                      ..++..+|.+...+...+..+++...
T Consensus       174 ~~ll~~~p~~~~~~~~~~~~rl~~~~  199 (202)
T 3bpz_A          174 NEVLEEYPMMRRAFETVAIDRLDRIG  199 (202)
T ss_dssp             HHHHHHSGGGHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998888887544

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.97  E-value=2.2e-30  Score=223.76  Aligned_cols=172  Identities=23%  Similarity=0.461  Sum_probs=159.8

Q ss_pred             HHhhHHHHHHHHHHHhCCCCCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcc
Q psy9025          61 AHVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLR  140 (361)
Q Consensus        61 ~~~~~~l~~~i~~y~~~~~~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~  140 (361)
                      +++|.+++.+|++|++|.|.        .+.++++++++.||+.||.++..+.+.++++++|+|.+++++++..++..++
T Consensus        24 ~~i~~~l~~rv~~y~~~~~~--------~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~   95 (198)
T 2ptm_A           24 RKLPSHLRNKILDYYEYRYR--------GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLE   95 (198)
T ss_dssp             TTCCHHHHHHHHHHHHHHHT--------TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCE
T ss_pred             cCCCHHHHHHHHHHHHHHHc--------ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhcc
Confidence            35889999999999999995        3568899999999999999999999999999999999999999999999999


Q ss_pred             eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe-CcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHH
Q psy9025         141 PVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDD  219 (361)
Q Consensus       141 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~  219 (361)
                      ...|.||++|+++|++++.+|||.+|.|+++. ++..+..+++|++||+.+++.   +.++.++++|.++|+++.|++++
T Consensus        96 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~---~~~~~~~~~a~~~~~l~~i~~~~  172 (198)
T 2ptm_A           96 FEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLT---RERRVASVKCETYCTLFSLSVQH  172 (198)
T ss_dssp             EEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHH---SSCCSSEEEESSCEEEEEEEHHH
T ss_pred             ceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcC---CCccceEEEEeeEEEEEEEeHHH
Confidence            99999999999999999999999999999983 334889999999999999998   88999999999999999999999


Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHH
Q psy9025         220 LNEAIEYYPNAQEVLKKKARQLIK  243 (361)
Q Consensus       220 f~~ll~~~p~~~~~~~~~~~~~l~  243 (361)
                      |..++.++|++...+...+.+|++
T Consensus       173 f~~ll~~~p~~~~~~~~~~~~rl~  196 (198)
T 2ptm_A          173 FNQVLDEFPAMRKTMEEIAVRRLT  196 (198)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHh
Confidence            999999999999888877776654

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.91  E-value=2e-23  Score=173.25  Aligned_cols=140  Identities=24%  Similarity=0.519  Sum_probs=125.7

Q ss_pred             HHHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCc
Q psy9025          95 NKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGE  174 (361)
Q Consensus        95 ~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~  174 (361)
                      +++++.+|+.+|.++..+++.++|+++|+|.+++++.+..++..++...|++|++|+++|++++.+|||.+|.|+++.++
T Consensus         6 ~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~   85 (160)
T 4f8a_A            6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD   85 (160)
T ss_dssp             ---------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEeCCCCeechhhhhcccCC--CceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHH
Q psy9025         175 TVLATLTEGSVFGEISLLALAGT--NRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKK  237 (361)
Q Consensus       175 ~~~~~l~~Gd~fGe~~ll~~~~~--~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~  237 (361)
                      ..+..+++|++||+.+++.   +  .++.++++|.++|+++.|++++|.+++.++|.+...+.+.
T Consensus        86 ~~~~~~~~G~~fG~~~~~~---~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~  147 (160)
T 4f8a_A           86 EVVAILGKGDVFGDVFWKE---ATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRN  147 (160)
T ss_dssp             EEEEEEETTCEEECCTTTC---SSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred             EEEEEecCCCEeCcHHHhc---CcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997   5  6999999999999999999999999999999998776543

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.87  E-value=1e-21  Score=159.24  Aligned_cols=131  Identities=22%  Similarity=0.381  Sum_probs=119.6

Q ss_pred             hCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEE
Q psy9025         100 NLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLAT  179 (361)
Q Consensus       100 ~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~  179 (361)
                      .+|..+|.+........+|+++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++..++..+..
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~   86 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT   86 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEE
Confidence            57888888888899999999999999999999999999999999999999999999999999999999999987789999


Q ss_pred             eCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHH
Q psy9025         180 LTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEV  233 (361)
Q Consensus       180 l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~  233 (361)
                      +++|++||+.+++.   +.++.++++|.++|+++.|++++|.+++.++|.+.+.
T Consensus        87 ~~~G~~fGe~~~l~---~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~  137 (139)
T 3ocp_A           87 MGPGKVFGELAILY---NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT  137 (139)
T ss_dssp             ECTTCEESCHHHHH---CCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred             eCCCCEeccHHHHC---CCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence            99999999999998   8999999999999999999999999999999998643

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.86  E-value=6.7e-21  Score=162.73  Aligned_cols=152  Identities=20%  Similarity=0.310  Sum_probs=131.8

Q ss_pred             HHHHHhhCCHhH----HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEE
Q psy9025          94 ENKILNNLPLKL----KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ  169 (361)
Q Consensus        94 e~~ll~~lp~~L----r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~  169 (361)
                      +..+.+.+++.+    +.+........+|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus        13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~   92 (187)
T 3gyd_A           13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN   92 (187)
T ss_dssp             HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred             cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence            445556666665    4555566778999999999999999999999999999999999999999999999999999999


Q ss_pred             EE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHH----HHHHH
Q psy9025         170 VV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK----KKARQ  240 (361)
Q Consensus       170 v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~----~~~~~  240 (361)
                      ++     |++.++..+++|++||+.+++.   +.++.++++|.++|+++.|++++|..++.++|.+...+.    +.+.+
T Consensus        93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~---~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~  169 (187)
T 3gyd_A           93 VIKDIPNKGIQTIAKVGAGAIIGEMSMID---GMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTA  169 (187)
T ss_dssp             EEEEETTTEEEEEEEEETTCEESHHHHHH---CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCeEEEEEccCCCeeeeHHHhC---CCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            98     2347899999999999999998   889999999999999999999999999999999987766    55566


Q ss_pred             HHHHHHhh
Q psy9025         241 LIKENAAR  248 (361)
Q Consensus       241 ~l~~~~~~  248 (361)
                      +++....+
T Consensus       170 rl~~~~~~  177 (187)
T 3gyd_A          170 RFRESYDR  177 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555433

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.86  E-value=9.9e-21  Score=153.53  Aligned_cols=126  Identities=17%  Similarity=0.301  Sum_probs=113.8

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEE---EEEeCCCCee
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETV---LATLTEGSVF  186 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~---~~~l~~Gd~f  186 (361)
                      .++|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++     +++..   +..+++|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            357899999999999999999999999999999999999999999999999999998     34566   8999999999


Q ss_pred             chhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q psy9025         187 GEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK  243 (361)
Q Consensus       187 Ge~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~  243 (361)
                      |+.+++.   +.++.++++|.++|+++.|++++|..++.++|.+...+.+.+.+++.
T Consensus        85 G~~~~~~---~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~  138 (142)
T 3mdp_A           85 GVSSLIK---PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL  138 (142)
T ss_dssp             CGGGSST---TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             chHHHcC---CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence            9999998   89999999999999999999999999999999999877777766654

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.85  E-value=2e-20  Score=152.86  Aligned_cols=131  Identities=24%  Similarity=0.379  Sum_probs=122.2

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEI  189 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~  189 (361)
                      .++++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++..+..+++|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            357899999999999999999999999999999999999999999999999999998     455789999999999999


Q ss_pred             hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         190 SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       190 ~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +++.   +.++.++++|.++|+++.|++++|..++.++|.+...+...+.+++.....+
T Consensus        84 ~~~~---~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~  139 (149)
T 2pqq_A           84 SLFD---PGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDA  139 (149)
T ss_dssp             GGTS---CEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcC---CCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            9998   7899999999999999999999999999999999999998888888776644

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.85  E-value=2.5e-20  Score=150.62  Aligned_cols=128  Identities=30%  Similarity=0.445  Sum_probs=117.2

Q ss_pred             HHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhh
Q psy9025         113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLL  192 (361)
Q Consensus       113 ~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll  192 (361)
                      ...++|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++...  ...+++|++||+.+++
T Consensus         8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G~~~~~   85 (138)
T 1vp6_A            8 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALI   85 (138)
T ss_dssp             HHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEECHHHHH
T ss_pred             HHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEeeehHhc
Confidence            35678999999999999999999999999999999999999999999999999999998544  3589999999999999


Q ss_pred             cccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q psy9025         193 ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN  245 (361)
Q Consensus       193 ~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~  245 (361)
                      .   +.++.++++|.++|+++.|++++|..++.++|.+...+.+.+.+|++..
T Consensus        86 ~---~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~  135 (138)
T 1vp6_A           86 S---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA  135 (138)
T ss_dssp             H---CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred             c---CCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence            8   7899999999999999999999999999999999999888888776543

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.84  E-value=7.9e-20  Score=150.29  Aligned_cols=128  Identities=22%  Similarity=0.289  Sum_probs=116.4

Q ss_pred             HHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeech
Q psy9025         114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGE  188 (361)
Q Consensus       114 ~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe  188 (361)
                      ..++++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+
T Consensus        10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~   89 (154)
T 2z69_A           10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE   89 (154)
T ss_dssp             HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESG
T ss_pred             HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeecc
Confidence            3578999999999999999999999999999999999999999999999999999998     45577899999999999


Q ss_pred             hhhhcccCCCc-eeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q psy9025         189 ISLLALAGTNR-RTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKE  244 (361)
Q Consensus       189 ~~ll~~~~~~~-~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~  244 (361)
                      .+++.   +.+ +.++++|.++|+++.|++++|..++.++|.+...+.+.+..+++.
T Consensus        90 ~~~~~---~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~  143 (154)
T 2z69_A           90 AMMFM---DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ  143 (154)
T ss_dssp             GGGGS---SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred             Hhhcc---CCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            99998   677 999999999999999999999999999999998888877776653

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.82  E-value=2.7e-19  Score=155.75  Aligned_cols=127  Identities=25%  Similarity=0.391  Sum_probs=115.9

Q ss_pred             hccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhh
Q psy9025         118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLL  192 (361)
Q Consensus       118 l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll  192 (361)
                      |+++|+|.+++++++..++..++...|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.+++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            568999999999999999999999999999999999999999999999999998     455789999999999999999


Q ss_pred             cccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         193 ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       193 ~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                      .   +.++.++++|.++|+++.|++++|..++.++|.+...+...+..++.....
T Consensus        81 ~---~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~  132 (216)
T 4ev0_A           81 D---EGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADL  132 (216)
T ss_dssp             H---CCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---CCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH
Confidence            8   889999999999999999999999999999999998888888877765543

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.82  E-value=1.3e-19  Score=155.31  Aligned_cols=132  Identities=11%  Similarity=0.116  Sum_probs=120.7

Q ss_pred             HHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeech
Q psy9025         114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGE  188 (361)
Q Consensus       114 ~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe  188 (361)
                      ...+++.+++|.+|+++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+
T Consensus         5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge   84 (194)
T 3dn7_A            5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD   84 (194)
T ss_dssp             CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence            3567788999999999999999999999999999999999999999999999999998     45688999999999998


Q ss_pred             h-hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         189 I-SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       189 ~-~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      . +++.   +.++.++++|.++|+++.|++++|.+++.++|.+...+...+.+++.....+
T Consensus        85 ~~~~~~---~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~  142 (194)
T 3dn7_A           85 YMAFQK---QQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLR  142 (194)
T ss_dssp             HHHHHH---TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhc---CCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            7 6677   7899999999999999999999999999999999998888888887665544

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.82  E-value=1.2e-19  Score=149.80  Aligned_cols=120  Identities=19%  Similarity=0.401  Sum_probs=112.1

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhh
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEIS  190 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~  190 (361)
                      ......+|+++++|..|+++.+..++..++...|.+|++|+++|++++.+|||.+|.|+++.++..+..+++|++||+.+
T Consensus        33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~  112 (154)
T 3pna_A           33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELA  112 (154)
T ss_dssp             HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHH
T ss_pred             HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEeeehH
Confidence            44567899999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             hhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHH
Q psy9025         191 LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEV  233 (361)
Q Consensus       191 ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~  233 (361)
                      ++.   +.++.++++|.++|+++.|++++|..++.++|.+...
T Consensus       113 ~~~---~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~  152 (154)
T 3pna_A          113 LIY---GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK  152 (154)
T ss_dssp             HHH---CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred             hhc---CCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence            998   8899999999999999999999999999999987543

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.82  E-value=1e-19  Score=151.20  Aligned_cols=124  Identities=18%  Similarity=0.314  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeC
Q psy9025         106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLT  181 (361)
Q Consensus       106 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~  181 (361)
                      +.+.......++|+++++|..|+++.+..++..++...|.+|++|+++|++++.+|||.+|.|+++    |++..+..++
T Consensus        28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~  107 (161)
T 3idb_B           28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYD  107 (161)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcC
Confidence            444556667899999999999999999999999999999999999999999999999999999998    3357889999


Q ss_pred             CCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHH
Q psy9025         182 EGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE  232 (361)
Q Consensus       182 ~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~  232 (361)
                      +|++||+.+++.   +.++.++++|.++|+++.|++++|..++.++|.+..
T Consensus       108 ~G~~fGe~~~~~---~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~  155 (161)
T 3idb_B          108 NRGSFGELALMY---NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR  155 (161)
T ss_dssp             SCCEECGGGGTC---CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred             CCCEechHHHHc---CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence            999999999998   889999999999999999999999999999998754

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.82  E-value=2.8e-19  Score=157.99  Aligned_cols=134  Identities=14%  Similarity=0.149  Sum_probs=123.9

Q ss_pred             HHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCee
Q psy9025         112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVF  186 (361)
Q Consensus       112 ~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~f  186 (361)
                      ....++|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++|
T Consensus         7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~   86 (237)
T 3fx3_A            7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF   86 (237)
T ss_dssp             HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred             HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence            345688999999999999999999999999999999999999999999999999999998     455889999999999


Q ss_pred             chhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         187 GEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       187 Ge~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      |+.+++.   +.++.++++|.++|+++.|++++|..++.++|.+...+...+.+++.....+
T Consensus        87 G~~~~~~---~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~  145 (237)
T 3fx3_A           87 GEAVALR---NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQ  145 (237)
T ss_dssp             CHHHHHH---TCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHhc---CCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998   8899999999999999999999999999999999998888888887765544

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.81  E-value=3.3e-19  Score=156.99  Aligned_cols=131  Identities=22%  Similarity=0.333  Sum_probs=120.9

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEI  189 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~  189 (361)
                      .++|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            468899999999999999999999999999999999999999999999999999998     455889999999999999


Q ss_pred             hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         190 SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       190 ~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +++.   +.++.++++|.++|+++.|++++|..++.++|.+...+.+.+.+++.....+
T Consensus        85 ~~~~---~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~  140 (231)
T 3e97_A           85 AVLA---HQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDE  140 (231)
T ss_dssp             TTTC---CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhC---CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            9998   8899999999999999999999999999999999988888887777655443

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.81  E-value=2.7e-19  Score=157.10  Aligned_cols=131  Identities=22%  Similarity=0.411  Sum_probs=121.2

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEI  189 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~  189 (361)
                      .++|+++|+|..++++.+..++..++...|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   84 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL   84 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence            467899999999999999999999999999999999999999999999999999998     455789999999999999


Q ss_pred             hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         190 SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       190 ~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +++.   +.++.++++|.++|+++.|++++|..++.++|.+...+...+.+++.....+
T Consensus        85 ~~~~---~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~  140 (227)
T 3d0s_A           85 SIFD---PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNN  140 (227)
T ss_dssp             HHHS---CSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcC---CCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence            9998   7899999999999999999999999999999999988888888877665433

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.80  E-value=1e-18  Score=152.47  Aligned_cols=129  Identities=11%  Similarity=0.102  Sum_probs=118.3

Q ss_pred             HHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCe--ech
Q psy9025         116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSV--FGE  188 (361)
Q Consensus       116 ~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~--fGe  188 (361)
                      ++|+++|+|..|+++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            67899999999999999999999999999999999999999999999999999998     45688999999999  799


Q ss_pred             hhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         189 ISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       189 ~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                      .+++.   +.++.++++|.++|+++.|++++|.+++.++|.+...+...+.+++.....
T Consensus        83 ~~~~~---~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~  138 (220)
T 3dv8_A           83 SCIMR---SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMW  138 (220)
T ss_dssp             GGGCT---TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC---CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            99998   889999999999999999999999999999999998888888777765443

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.80  E-value=9.6e-19  Score=154.32  Aligned_cols=133  Identities=16%  Similarity=0.159  Sum_probs=122.7

Q ss_pred             HHHHHhccCcccccCCHHHHHHHHHh--cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCe
Q psy9025         113 VHIQTLSKVQLFQDCDEALLRELVLK--LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSV  185 (361)
Q Consensus       113 ~~~~~l~~~~~f~~l~~~~l~~l~~~--l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~  185 (361)
                      ....+++++|+|..++++++..++..  ++...|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++
T Consensus        15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~   94 (232)
T 1zyb_A           15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL   94 (232)
T ss_dssp             HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred             HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCe
Confidence            34578899999999999999999998  999999999999999999999999999999997     45689999999999


Q ss_pred             echhhhhcccCCCc-eeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         186 FGEISLLALAGTNR-RTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       186 fGe~~ll~~~~~~~-~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      ||+.+++.   +.+ +.++++|.++|+++.|++++|..++.++|.+...+.+.+.+++.....+
T Consensus        95 fG~~~~~~---~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~  155 (232)
T 1zyb_A           95 IEPQSLFG---MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR  155 (232)
T ss_dssp             ECGGGGSS---SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehHHhC---CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997   666 9999999999999999999999999999999999988888888766544

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.80  E-value=6.6e-19  Score=161.26  Aligned_cols=134  Identities=20%  Similarity=0.342  Sum_probs=125.8

Q ss_pred             HHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcE
Q psy9025          96 KILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET  175 (361)
Q Consensus        96 ~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~  175 (361)
                      .-..++|...|.+.......++++++++|+.|+++++..|+..++...|++|++|+++|+.++.+|||.+|.|++..++.
T Consensus        19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~   98 (299)
T 3shr_A           19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV   98 (299)
T ss_dssp             ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTE
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCE
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             EEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHH
Q psy9025         176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE  232 (361)
Q Consensus       176 ~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~  232 (361)
                      .+..+.+|++||+.+++.   +.++.++++|.++|+++.|++++|..++..+|....
T Consensus        99 ~~~~~~~G~~fGe~~ll~---~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~  152 (299)
T 3shr_A           99 KLCTMGPGKVFGELAILY---NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH  152 (299)
T ss_dssp             EEEEECTTCEESCSGGGT---TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCeeeHhHHhc---CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence            999999999999999998   899999999999999999999999999999997644

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.79  E-value=2.7e-18  Score=150.80  Aligned_cols=131  Identities=16%  Similarity=0.267  Sum_probs=109.7

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEI  189 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~  189 (361)
                      ...+++.++|..|++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            467889999999999999999999999999999999999999999999999999998     456889999999999999


Q ss_pred             hhhcccCC-CceeeEEEecceEEEEEEeHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHhh
Q psy9025         190 SLLALAGT-NRRTADVRSHGFSNLFVLNKDDLNEAIEYY-----PNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       190 ~ll~~~~~-~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~-----p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +++.   + .++.++++|.++|+++.|++++|.+++.++     |.+...+...+.+++.....+
T Consensus        90 ~~~~---~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~  151 (230)
T 3iwz_A           90 GLFI---ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRK  151 (230)
T ss_dssp             GGTS---CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhc---CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9997   4 579999999999999999999999999999     999988888888777665433

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.79  E-value=2.4e-18  Score=151.53  Aligned_cols=126  Identities=10%  Similarity=0.164  Sum_probs=116.9

Q ss_pred             cCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcc
Q psy9025         120 KVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLAL  194 (361)
Q Consensus       120 ~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~  194 (361)
                      .+|+|..++++.+..++..++...|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.+++. 
T Consensus        14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~-   92 (232)
T 2gau_A           14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA-   92 (232)
T ss_dssp             SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH-
T ss_pred             ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC-
Confidence            6789999999999999999999999999999999999999999999999998     5668899999999999999998 


Q ss_pred             cCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         195 AGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       195 ~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                        +.++.++++|.++|+++.|++++|..++.++|.+...+...+.+++.....+
T Consensus        93 --~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~  144 (232)
T 2gau_A           93 --EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERR  144 (232)
T ss_dssp             --TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence              7899999999999999999999999999999999998888888877665543

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.78  E-value=4.6e-19  Score=155.46  Aligned_cols=129  Identities=21%  Similarity=0.270  Sum_probs=119.2

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEI  189 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~  189 (361)
                      .++|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.
T Consensus         8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   87 (227)
T 3dkw_A            8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   87 (227)
T ss_dssp             HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence            478999999999999999999999999999999999999999999999999999998     456789999999999999


Q ss_pred             hhhcccCCCc-eeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         190 SLLALAGTNR-RTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       190 ~ll~~~~~~~-~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                      +++.   +.+ +.++++|.++|+++.|++++|..++..+|.+...+...+..++....
T Consensus        88 ~~~~---~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~  142 (227)
T 3dkw_A           88 MMFM---DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI  142 (227)
T ss_dssp             TTTT---TCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH
T ss_pred             HhcC---CCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            9997   777 99999999999999999999999999999999888887777766543

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.78  E-value=4.2e-18  Score=158.34  Aligned_cols=127  Identities=24%  Similarity=0.393  Sum_probs=117.7

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCeechhh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEIS  190 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~fGe~~  190 (361)
                      .++|+++|+|+.|+++++..++..++.+.|++|++|+++|++++.+|||.+|.|+++    ++..++..+++|++||+.+
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~   91 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA   91 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence            478899999999999999999999999999999999999999999999999999998    2335889999999999999


Q ss_pred             hhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q psy9025         191 LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN  245 (361)
Q Consensus       191 ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~  245 (361)
                      ++.   +.++.++++|.++|+++.|++++|..++ ++|.+...+.+.+.+++...
T Consensus        92 l~~---~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~  142 (333)
T 4ava_A           92 LLR---DSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLAAF  142 (333)
T ss_dssp             HHH---TCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHHHH
T ss_pred             hcC---CCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHHhh
Confidence            998   8999999999999999999999999999 99999988888877776643

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.78  E-value=1.8e-18  Score=158.37  Aligned_cols=135  Identities=27%  Similarity=0.388  Sum_probs=124.9

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe------CcEEEEEeCCCC
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS------GETVLATLTEGS  184 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~------~~~~~~~l~~Gd  184 (361)
                      ......+++++++|..++++.+..++..++...|.+|++|+++|++++.+|||.+|.|+++.      ++..+..+++|+
T Consensus       152 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~  231 (299)
T 3shr_A          152 HTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGD  231 (299)
T ss_dssp             HHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTC
T ss_pred             HHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCC
Confidence            34567889999999999999999999999999999999999999999999999999999983      347899999999


Q ss_pred             eechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         185 VFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       185 ~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +||+.+++.   +.++.++++|.++|+++.|++++|.+++..+|.+...+.+.+.+|++....+
T Consensus       232 ~fGe~~ll~---~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~~  292 (299)
T 3shr_A          232 WFGEKALQG---EDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEA  292 (299)
T ss_dssp             EECGGGGSS---SEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EeChHHHhC---CCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchhh
Confidence            999999998   8899999999999999999999999999999999988888888888876654

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.77  E-value=2.9e-19  Score=143.81  Aligned_cols=125  Identities=15%  Similarity=0.185  Sum_probs=108.8

Q ss_pred             CHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeC-CCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEe
Q psy9025         102 PLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYL-PGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATL  180 (361)
Q Consensus       102 p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~-~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l  180 (361)
                      |+..|.+........+|+++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++..+.....+
T Consensus         2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l   81 (134)
T 2d93_A            2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENL   81 (134)
T ss_dssp             CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEE
T ss_pred             ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEe
Confidence            34444444455667889999999999999999999999999999 99999999999999999999999998432222779


Q ss_pred             CCCCeechhhhhcccCCCceeeEE-EecceEEEEEEeHHHHHHHHHHCHH
Q psy9025         181 TEGSVFGEISLLALAGTNRRTADV-RSHGFSNLFVLNKDDLNEAIEYYPN  229 (361)
Q Consensus       181 ~~Gd~fGe~~ll~~~~~~~~~~~v-~A~~~~~~~~l~~~~f~~ll~~~p~  229 (361)
                      ++|++||+.+++.   +.++.+++ +|.++|+++.|++++|..++.+++.
T Consensus        82 ~~G~~fG~~~~~~---~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~  128 (134)
T 2d93_A           82 FMGNSFGITPTLD---KQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK  128 (134)
T ss_dssp             CTTCEESCCSSSC---CEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred             cCCCccChhHhcC---CCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence            9999999999998   78888888 9999999999999999999887764

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.76  E-value=6.3e-19  Score=142.15  Aligned_cols=113  Identities=26%  Similarity=0.438  Sum_probs=101.7

Q ss_pred             HHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEE--EeCCCCeechh
Q psy9025         116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLA--TLTEGSVFGEI  189 (361)
Q Consensus       116 ~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~--~l~~Gd~fGe~  189 (361)
                      ++|+++|+|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|++.    +++.++.  .+++|++||+.
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~   85 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence            46889999999999999999999999999999999999999999999999999976    3334444  99999999999


Q ss_pred             hh---hcccCCC------ceeeEEEecceEEEEEEeHHHHHHHHHHCHHHH
Q psy9025         190 SL---LALAGTN------RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ  231 (361)
Q Consensus       190 ~l---l~~~~~~------~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~  231 (361)
                      ++   +.   +.      ++.++++|.++|+++.|++++|.+++.++|.+.
T Consensus        86 ~l~~~~~---~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~  133 (137)
T 1wgp_A           86 LLTWALD---PKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG  133 (137)
T ss_dssp             HHHHHHC---SSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred             HHHHHhc---cccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence            96   65   44      468999999999999999999999999999764

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.76  E-value=1.7e-17  Score=143.55  Aligned_cols=123  Identities=19%  Similarity=0.291  Sum_probs=109.3

Q ss_pred             cccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccC
Q psy9025         122 QLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAG  196 (361)
Q Consensus       122 ~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~  196 (361)
                      ++++.++++.+..++..++...|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.+++.   
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~---   78 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE---   78 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTS---
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhc---
Confidence            46777999999999999999999999999999999999999999999998     4557899999999999999998   


Q ss_pred             CC-ceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         197 TN-RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       197 ~~-~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                      +. ++.++++|.++|+++.|++++|..++.++|.+...+.+.+..++.....
T Consensus        79 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~  130 (210)
T 3ryp_A           79 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSE  130 (210)
T ss_dssp             TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence            55 8999999999999999999999999999999998888888877765543

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.75  E-value=5.2e-18  Score=150.35  Aligned_cols=118  Identities=20%  Similarity=0.301  Sum_probs=110.8

Q ss_pred             HHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhc
Q psy9025         114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLA  193 (361)
Q Consensus       114 ~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~  193 (361)
                      ..++|+++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++.++..+..+++|++||+.+++.
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l~~   84 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMY   84 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHHHHH
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhHHhc
Confidence            46789999999999999999999999999999999999999999999999999999997666679999999999999998


Q ss_pred             ccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHH
Q psy9025         194 LAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVL  234 (361)
Q Consensus       194 ~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~  234 (361)
                         +.++.++++|.++|.++.|++++|..++..+|.....+
T Consensus        85 ---~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~  122 (246)
T 3of1_A           85 ---NSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLM  122 (246)
T ss_dssp             ---TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHH
T ss_pred             ---CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHH
Confidence               89999999999999999999999999999999765543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.75  E-value=1.3e-17  Score=151.85  Aligned_cols=128  Identities=19%  Similarity=0.379  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCe
Q psy9025         106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSV  185 (361)
Q Consensus       106 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~  185 (361)
                      |..-......++|+++++|..|+++.+..++..++...|++|++|+++|+.++.+|||.+|.|+++.++..+..+++|++
T Consensus        29 ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~  108 (291)
T 2qcs_B           29 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGS  108 (291)
T ss_dssp             CCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCE
T ss_pred             CCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCc
Confidence            33444556788999999999999999999999999999999999999999999999999999999977788999999999


Q ss_pred             echhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHH
Q psy9025         186 FGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKK  236 (361)
Q Consensus       186 fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~  236 (361)
                      ||+.+++.   +.++.++++|.++|+++.|++++|..++..+|.+...+..
T Consensus       109 fGe~~l~~---~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  156 (291)
T 2qcs_B          109 FGELALIY---GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYE  156 (291)
T ss_dssp             ECGGGGTC---CCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHhc---CCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHH
Confidence            99999998   8899999999999999999999999999999998665443

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.75  E-value=3.3e-20  Score=174.35  Aligned_cols=127  Identities=31%  Similarity=0.457  Sum_probs=0.9

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcc
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLAL  194 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~  194 (361)
                      .+.++++|+|+++++++++.++..++.+.|+||+.|+++||+++.+|||.+|.|+++..+  ...+++|++|||.+++. 
T Consensus       227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~-  303 (355)
T 3beh_A          227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALIS-  303 (355)
T ss_dssp             HC------------------------------------------------------------------------------
T ss_pred             chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEeehHHhC-
Confidence            356788999999999999999999999999999999999999999999999999998544  46899999999999998 


Q ss_pred             cCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         195 AGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       195 ~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                        +.++.++++|.++|+++.+++++|.++++++|++...+.+.+.+|+++..
T Consensus       304 --~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~~  353 (355)
T 3beh_A          304 --GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAAA  353 (355)
T ss_dssp             ----------------------------------------------------
T ss_pred             --CCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Confidence              88999999999999999999999999999999999998888888876543

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.75  E-value=4e-17  Score=140.92  Aligned_cols=118  Identities=17%  Similarity=0.266  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCC---
Q psy9025         127 CDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTN---  198 (361)
Q Consensus       127 l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~---  198 (361)
                      |+++++..++..++...|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.+++.   +.   
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~---~~~~~   77 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFE---KEGSE   77 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC--------
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhc---CCCCC
Confidence            688999999999999999999999999999999999999999998     4567899999999999999997   56   


Q ss_pred             -ceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         199 -RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       199 -~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                       ++.++++|.++|+++.|++++|..++.++|.+...+.+.+.+++.....
T Consensus        78 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~  127 (207)
T 2oz6_A           78 QERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTR  127 (207)
T ss_dssp             CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999998888877777665543

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.1e-17  Score=146.37  Aligned_cols=117  Identities=22%  Similarity=0.344  Sum_probs=109.1

Q ss_pred             HHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCc-EEEEEeCCCCeechhh
Q psy9025         112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGE-TVLATLTEGSVFGEIS  190 (361)
Q Consensus       112 ~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~Gd~fGe~~  190 (361)
                      .+...+++++++|..+++..+..++..++...|.+|++|+++|++++.+|||.+|.|+++... ..+..+++|++||+.+
T Consensus       121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~  200 (246)
T 3of1_A          121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVA  200 (246)
T ss_dssp             HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHH
T ss_pred             HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHH
Confidence            345678899999999999999999999999999999999999999999999999999999543 3889999999999999


Q ss_pred             hhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHH
Q psy9025         191 LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ  231 (361)
Q Consensus       191 ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~  231 (361)
                      ++.   +.++.++++|.++|+++.|++++|.+++..+|++.
T Consensus       201 ~~~---~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~  238 (246)
T 3of1_A          201 LLN---DLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL  238 (246)
T ss_dssp             HHH---TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred             HhC---CCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence            998   89999999999999999999999999999999864

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=157.21  Aligned_cols=127  Identities=21%  Similarity=0.373  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCe
Q psy9025         106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSV  185 (361)
Q Consensus       106 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~  185 (361)
                      |.+-.......+|+++++|++|+++.+..++..+..+.|.+|++|+++|+.++.+|||.+|.|+++.++..+..+++|++
T Consensus       120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~  199 (381)
T 4din_B          120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGS  199 (381)
T ss_dssp             CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCC
T ss_pred             CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCE
Confidence            44444566788999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             echhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHH
Q psy9025         186 FGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK  235 (361)
Q Consensus       186 fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~  235 (361)
                      ||+.+++.   +.++.++++|.++|++|.|++++|..++..+|.+...+.
T Consensus       200 fGe~all~---~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~  246 (381)
T 4din_B          200 FGELALIY---GTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMY  246 (381)
T ss_dssp             BCGGGGTS---CCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             EEchHHhc---CCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHH
Confidence            99999998   899999999999999999999999999999998865443

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.72  E-value=3.3e-17  Score=142.47  Aligned_cols=126  Identities=8%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             cCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcc
Q psy9025         120 KVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLAL  194 (361)
Q Consensus       120 ~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~  194 (361)
                      +-|+|+..++..+..+...++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.+++. 
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~-   81 (213)
T 1o5l_A            3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS-   81 (213)
T ss_dssp             ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS-
T ss_pred             ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc-
Confidence            4589999999999999999999999999999999999999999999999998     4558899999999999999987 


Q ss_pred             cCCC-ceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         195 AGTN-RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       195 ~~~~-~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                        +. ++.++++|.++|+++.|++++|.+++.++|.+...+.+.+.+++.....+
T Consensus        82 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~  134 (213)
T 1o5l_A           82 --SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEK  134 (213)
T ss_dssp             --SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence              55 89999999999999999999999999999999888888777777655433

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.72  E-value=9.4e-17  Score=144.07  Aligned_cols=121  Identities=18%  Similarity=0.311  Sum_probs=108.0

Q ss_pred             ccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCC-
Q psy9025         125 QDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTN-  198 (361)
Q Consensus       125 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~-  198 (361)
                      ..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+.+++.   +. 
T Consensus        55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~---~~~  131 (260)
T 3kcc_A           55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE---EGQ  131 (260)
T ss_dssp             ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTS---TTC
T ss_pred             CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhC---CCC
Confidence            55999999999999999999999999999999999999999999998     4557899999999999999998   56 


Q ss_pred             ceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         199 RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       199 ~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      ++.++++|.++|+++.|++++|..++.++|.+...+.+.+..++.....+
T Consensus       132 ~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~  181 (260)
T 3kcc_A          132 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEK  181 (260)
T ss_dssp             BCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988888888777665433

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.72  E-value=7.5e-17  Score=146.81  Aligned_cols=122  Identities=23%  Similarity=0.305  Sum_probs=111.8

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe------CcEEEEEeCCCC
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS------GETVLATLTEGS  184 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~------~~~~~~~l~~Gd  184 (361)
                      ......+++++++|..++...+..++..++...|.+|++|+++|++++.+|||.+|.|+++.      +...+..+++|+
T Consensus       152 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~  231 (291)
T 2qcs_B          152 RKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSD  231 (291)
T ss_dssp             HHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTC
T ss_pred             HHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCC
Confidence            34556788999999999999999999999999999999999999999999999999999982      237899999999


Q ss_pred             eechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHH
Q psy9025         185 VFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK  235 (361)
Q Consensus       185 ~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~  235 (361)
                      +|||.+++.   +.++.++++|.++|+++.|++++|..++..+|++...+.
T Consensus       232 ~fGe~~ll~---~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~  279 (291)
T 2qcs_B          232 YFGEIALLM---NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNI  279 (291)
T ss_dssp             EECSGGGTC---CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSH
T ss_pred             EecHHHHcC---CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHH
Confidence            999999998   889999999999999999999999999999999765443

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.72  E-value=5.4e-17  Score=155.48  Aligned_cols=123  Identities=17%  Similarity=0.310  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeC
Q psy9025         106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLT  181 (361)
Q Consensus       106 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~  181 (361)
                      |.+-.......+|+++++|++|+++.+..|+..+..+.|.+|++|+++|+.++.+|||.+|.|+++    |.+..+..+.
T Consensus       135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~  214 (416)
T 3tnp_B          135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYD  214 (416)
T ss_dssp             CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEec
Confidence            444556677899999999999999999999999999999999999999999999999999999998    3468899999


Q ss_pred             CCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHH
Q psy9025         182 EGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQ  231 (361)
Q Consensus       182 ~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~  231 (361)
                      +|++||+.+++.   +.++.++++|.++|.+|.|++++|..++..+|.+.
T Consensus       215 ~G~~fGe~all~---~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~  261 (416)
T 3tnp_B          215 NRGSFGELALMY---NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKK  261 (416)
T ss_dssp             SCCEECGGGGTS---CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCCEEeeHHHhc---CCCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence            999999999998   89999999999999999999999999999988864

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.71  E-value=4e-17  Score=142.52  Aligned_cols=122  Identities=16%  Similarity=0.258  Sum_probs=111.6

Q ss_pred             HHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCeechhhh
Q psy9025         116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEISL  191 (361)
Q Consensus       116 ~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~fGe~~l  191 (361)
                      .+|+++|+|..++++.+..++..++...|++|++|+++|++++.+|||.+|.|+++    |++.++..+++|++||+   
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~---   80 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT---   80 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence            46889999999999999999999999999999999999999999999999999996    45688999999999998   


Q ss_pred             hcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         192 LALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       192 l~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                             ++.++++|.++|+++.||+++|..++.++|.+...+...+.+++.....
T Consensus        81 -------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  129 (220)
T 2fmy_A           81 -------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLT  129 (220)
T ss_dssp             -------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence                   4578999999999999999999999999999998888888877765543

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.70  E-value=3.8e-17  Score=154.81  Aligned_cols=127  Identities=22%  Similarity=0.314  Sum_probs=114.6

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe-----C-cEEEEEeCCCC
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----G-ETVLATLTEGS  184 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~-~~~~~~l~~Gd  184 (361)
                      ..++..+++++++|..+++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+++.     + ...+..+++|+
T Consensus       243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd  322 (381)
T 4din_B          243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSD  322 (381)
T ss_dssp             HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTC
T ss_pred             HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCC
Confidence            34566899999999999999999999999999999999999999999999999999999982     2 45789999999


Q ss_pred             eechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Q psy9025         185 VFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ  240 (361)
Q Consensus       185 ~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~  240 (361)
                      +||+.+++.   +.++.++++|.++|.|+.|++++|..++..+|++.+........
T Consensus       323 ~fGe~all~---~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~  375 (381)
T 4din_B          323 YFGEIALLL---NRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNS  375 (381)
T ss_dssp             EECTTGGGS---CCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHH
T ss_pred             EechHHHhC---CCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            999999998   88999999999999999999999999999999986654444433

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.70  E-value=9.7e-17  Score=142.99  Aligned_cols=128  Identities=13%  Similarity=0.029  Sum_probs=114.6

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechh
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEI  189 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~  189 (361)
                      ..++....++..|+++++..++..++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+ 
T Consensus         8 ~~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-   86 (250)
T 3e6c_C            8 KDFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-   86 (250)
T ss_dssp             -CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-
T ss_pred             hhhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-
Confidence            345566667799999999999999999999999999999999999999999999998     45688999999999999 


Q ss_pred             hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         190 SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       190 ~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                       ++.   +. +.++++|.++|+++.|++++|..++.++|.+...+...+.+++.....+
T Consensus        87 -~l~---~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~  140 (250)
T 3e6c_C           87 -LYP---TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQ  140 (250)
T ss_dssp             -CSC---CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ecC---CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence             666   66 9999999999999999999999999999999998888888887765544

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.70  E-value=1.1e-16  Score=155.81  Aligned_cols=129  Identities=23%  Similarity=0.323  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhccCcccccCCHHHHHHHHHhcce-EEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeC-cEEEEEeCCCCe
Q psy9025         108 DVAINVHIQTLSKVQLFQDCDEALLRELVLKLRP-VLYLPGDYICRKGEVGKEMYIVKTGQVQVVSG-ETVLATLTEGSV  185 (361)
Q Consensus       108 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~l~~Gd~  185 (361)
                      .-......++++++++|..++++.+..++..+.. ..|++|++|+++|+.++.+|||.+|.|+++.. ...+..+++|++
T Consensus       329 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~  408 (469)
T 1o7f_A          329 VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD  408 (469)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCE
T ss_pred             HHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCE
Confidence            3345556789999999999999999999999985 49999999999999999999999999999843 358999999999


Q ss_pred             echhhhhcccCCCceeeEEEecc-eEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Q psy9025         186 FGEISLLALAGTNRRTADVRSHG-FSNLFVLNKDDLNEAIEYYPNAQEVLKKKAR  239 (361)
Q Consensus       186 fGe~~ll~~~~~~~~~~~v~A~~-~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~  239 (361)
                      ||+.+++.   +.++.++++|.+ +|+++.|++++|..++..+|.+...+.....
T Consensus       409 fGe~~ll~---~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~~~  460 (469)
T 1o7f_A          409 FGKLALVN---DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQ  460 (469)
T ss_dssp             ECGGGGTC---CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC---------
T ss_pred             EEEehhhc---CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhcCc
Confidence            99999998   889999999998 6999999999999999999998776655443

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.69  E-value=7.3e-17  Score=154.54  Aligned_cols=128  Identities=15%  Similarity=0.276  Sum_probs=108.9

Q ss_pred             HHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe-----------CcEEEEEeCCC
Q psy9025         115 IQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----------GETVLATLTEG  183 (361)
Q Consensus       115 ~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----------~~~~~~~l~~G  183 (361)
                      ..+++++++|..+++..+..++..+....|.+|++|+++|+.++.+|||.+|.|+++.           ++..+..+++|
T Consensus       266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G  345 (416)
T 3tnp_B          266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG  345 (416)
T ss_dssp             SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred             HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence            3578899999999999999999999999999999999999999999999999999982           23678999999


Q ss_pred             CeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q psy9025         184 SVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN  245 (361)
Q Consensus       184 d~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~  245 (361)
                      ++||+.+++.   +.++.++++|.++|.|+.|++++|..++..+|++...+.....+++...
T Consensus       346 ~~fGE~all~---~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~  404 (416)
T 3tnp_B          346 QYFGELALVT---NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVAL  404 (416)
T ss_dssp             CEESGGGGTC---CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----------
T ss_pred             CEecHHHHhC---CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9999999998   8999999999999999999999999999999998776666666665543

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.69  E-value=9.8e-17  Score=156.04  Aligned_cols=130  Identities=22%  Similarity=0.317  Sum_probs=120.2

Q ss_pred             hCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe-----C-
Q psy9025         100 NLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----G-  173 (361)
Q Consensus       100 ~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~-  173 (361)
                      ..|+..|.+........+|+++++|..|+++++..++..+....|++|++|+++|++++.+|||.+|.|+++.     + 
T Consensus        26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~  105 (469)
T 1o7f_A           26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ  105 (469)
T ss_dssp             TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred             cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence            4677888888888889999999999999999999999999999999999999999999999999999999982     1 


Q ss_pred             -cEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHH
Q psy9025         174 -ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEV  233 (361)
Q Consensus       174 -~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~  233 (361)
                       +..+..+++|++||+.+ +.   +.++.++++|.++|+++.|++++|..++.++|.+...
T Consensus       106 ~~~~~~~~~~G~~fGe~~-l~---~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~  162 (469)
T 1o7f_A          106 DAVTICTLGIGTAFGESI-LD---NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG  162 (469)
T ss_dssp             GCEEEEEECTTCEECGGG-GG---TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTT
T ss_pred             cceEEEEccCCCCcchhh-hC---CCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHH
Confidence             37899999999999999 87   8999999999999999999999999999999986543

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.69  E-value=6.7e-17  Score=141.37  Aligned_cols=122  Identities=12%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             HhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCeechhhhh
Q psy9025         117 TLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEISLL  192 (361)
Q Consensus       117 ~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~fGe~~ll  192 (361)
                      +|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++    |++.++..+++|++||     
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence            4788999999999999999999999999999999999999999999999999996    3457889999999999     


Q ss_pred             cccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         193 ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       193 ~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                           .++.++++|.++|+++.|++++|..++.++|.+...+...+.+++.....+
T Consensus        76 -----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~  126 (222)
T 1ft9_A           76 -----MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRT  126 (222)
T ss_dssp             -----SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence                 256789999999999999999999999999999988888888777665433

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.64  E-value=1.1e-15  Score=161.74  Aligned_cols=132  Identities=24%  Similarity=0.381  Sum_probs=116.3

Q ss_pred             HHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe---
Q psy9025          96 KILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS---  172 (361)
Q Consensus        96 ~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---  172 (361)
                      ..|..-| .-|.+-..+.....|+++++|++|++..+..|+.++..+.|++|++||++||.++.+|+|.+|.|.|+.   
T Consensus        23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~  101 (999)
T 4f7z_A           23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET  101 (999)
T ss_dssp             HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred             HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence            3444444 456555566667889999999999999999999999999999999999999999999999999999982   


Q ss_pred             ----CcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHH
Q psy9025         173 ----GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE  232 (361)
Q Consensus       173 ----~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~  232 (361)
                          .+..+..+++|+.||| +++.   +.+|+++++|.++|++|+|++++|..++..+|+...
T Consensus       102 ~~~~~~~~v~~l~~G~sFGE-all~---n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~  161 (999)
T 4f7z_A          102 SSHQDAVTICTLGIGTAFGE-SILD---NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA  161 (999)
T ss_dssp             SCTTSCEEEEEEETTCEECG-GGGG---TCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             CCCCCceeEEEecCCcchhh-hhcc---CCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence                3578899999999999 7887   899999999999999999999999999999887543

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.64  E-value=4e-15  Score=131.96  Aligned_cols=116  Identities=20%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhcc---eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCc-
Q psy9025         129 EALLRELVLKLR---PVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNR-  199 (361)
Q Consensus       129 ~~~l~~l~~~l~---~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~-  199 (361)
                      ++.++.|+....   .+.|++|++|+.+|++++.+|||.+|.|+++     |++.++..+++|++||+.+++.   +.+ 
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~---~~~~  106 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLT---GNKS  106 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHS---SCCS
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhC---CCCC
Confidence            677888888888   9999999999999999999999999999998     4568899999999999999997   554 


Q ss_pred             -eeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         200 -RTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       200 -~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                       +.++++|.++|+++.|++++|.+++.++|.+...+.+.+.+++.....
T Consensus       107 ~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~  155 (243)
T 3la7_A          107 DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEM  155 (243)
T ss_dssp             BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence             568999999999999999999999999999998888888777765543

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.63  E-value=4.8e-15  Score=130.99  Aligned_cols=119  Identities=8%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             ccCCHHHHHHHHH--hcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCC
Q psy9025         125 QDCDEALLRELVL--KLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGT  197 (361)
Q Consensus       125 ~~l~~~~l~~l~~--~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~  197 (361)
                      ++++++++..+..  .++.+.|++|++|+++|++++.+|||.+|.|+++     |++.++..+ +|++||+.+++.   +
T Consensus         2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~---~   77 (238)
T 2bgc_A            2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFID---T   77 (238)
T ss_dssp             --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTT---T
T ss_pred             CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhc---C
Confidence            4688999999885  5999999999999999999999999999999998     455788888 999999999997   5


Q ss_pred             Cce--eeEEEec-ceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHh
Q psy9025         198 NRR--TADVRSH-GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAA  247 (361)
Q Consensus       198 ~~~--~~~v~A~-~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~  247 (361)
                      .++  ..++.|. ++|+++.|++++|..++.++|.+...+.+.+..++.....
T Consensus        78 ~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~  130 (238)
T 2bgc_A           78 ETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLA  130 (238)
T ss_dssp             CCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            543  5667777 5999999999999999999999998888888777765543

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.59  E-value=5.9e-15  Score=149.32  Aligned_cols=132  Identities=24%  Similarity=0.340  Sum_probs=117.5

Q ss_pred             HHHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcc-eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeC-
Q psy9025          96 KILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLR-PVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSG-  173 (361)
Q Consensus        96 ~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~-~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-  173 (361)
                      .++ ..|+..|.+...+...++++++++|.+++++.+..++..+. .+.|++|++|+++|+.++.+|||.+|.|+++.. 
T Consensus        13 ~iL-~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g   91 (694)
T 3cf6_E           13 MIL-RKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG   91 (694)
T ss_dssp             HHH-HSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred             HHH-cCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence            344 34555666666667788999999999999999999999998 789999999999999999999999999999843 


Q ss_pred             cEEEEEeCCCCeechhhhhcccCCCceeeEEEecc-eEEEEEEeHHHHHHHHHHCHHHH
Q psy9025         174 ETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG-FSNLFVLNKDDLNEAIEYYPNAQ  231 (361)
Q Consensus       174 ~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~-~~~~~~l~~~~f~~ll~~~p~~~  231 (361)
                      ..++..+++|++||+.+++.   +.++.++++|.+ +|+++.|++++|.+++.++|.+.
T Consensus        92 ~~il~~l~~Gd~fGe~al~~---~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~  147 (694)
T 3cf6_E           92 KGVVCTLHEGDDFGKLALVN---DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANT  147 (694)
T ss_dssp             TEEEEEEETTCEECHHHHHH---TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred             CEEEEEeCCCCEeehHHHhC---CCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence            36899999999999999998   889999999999 59999999999999999999873

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.57  E-value=1.3e-14  Score=153.46  Aligned_cols=114  Identities=25%  Similarity=0.373  Sum_probs=104.3

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEE-eCCCCEEEeCCCCCCeEEEEEeeEEEEEe-CcEEEEEeCCCCeech
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVL-YLPGDYICRKGEVGKEMYIVKTGQVQVVS-GETVLATLTEGSVFGE  188 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~-~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~~~~~~l~~Gd~fGe  188 (361)
                      .+...+++.++|.|.+|+...++.|+..+.... +.+|++|++|||.++.+|||.+|.|.|+. ++..+..+++||+|||
T Consensus       332 ~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGE  411 (999)
T 4f7z_A          332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGK  411 (999)
T ss_dssp             HHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECG
T ss_pred             HHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCcccc
Confidence            456678999999999999999999999998655 57899999999999999999999999984 5578899999999999


Q ss_pred             hhhhcccCCCceeeEEEecce-EEEEEEeHHHHHHHHHHC
Q psy9025         189 ISLLALAGTNRRTADVRSHGF-SNLFVLNKDDLNEAIEYY  227 (361)
Q Consensus       189 ~~ll~~~~~~~~~~~v~A~~~-~~~~~l~~~~f~~ll~~~  227 (361)
                      .++++   +.||.++++|.++ |++++|++++|.+++++-
T Consensus       412 lALL~---~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~  448 (999)
T 4f7z_A          412 LALVN---DAPRAASIVLREDNCHFLRVDKEDGNRILRDV  448 (999)
T ss_dssp             GGGTC---SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred             hhhcc---CCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence            99999   9999999999985 999999999999999863

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.52  E-value=6.4e-14  Score=119.80  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=87.3

Q ss_pred             EEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEe
Q psy9025         142 VLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLN  216 (361)
Q Consensus       142 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~  216 (361)
                      +.|++|++|+++|++++.+|||.+|.|+++     |++.++..+++|++||+ +++.   +.++.++++|.++|+++.||
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~---~~~~~~~~~A~~~~~v~~i~   77 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALE---GKAYRYTAEAMTEAVVQGLE   77 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGT---CSBCSSEEEESSSEEEEEEC
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhC---CCCceeEEEECCcEEEEEEc
Confidence            679999999999999999999999999997     35588999999999999 9998   78999999999999999999


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         217 KDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       217 ~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +++|.      |.+...+...+..++.....+
T Consensus        78 ~~~~~------p~~~~~~~~~l~~~l~~~~~~  103 (195)
T 3b02_A           78 PRAMD------HEALHRVARNLARQMRRVQAY  103 (195)
T ss_dssp             GGGCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcC------HHHHHHHHHHHHHHHHHHHHH
Confidence            99998      999888888877777665544

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.42  E-value=4.6e-13  Score=115.02  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=85.3

Q ss_pred             HHHhcceEEeCCCCEEEeCCCCC--CeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEec
Q psy9025         135 LVLKLRPVLYLPGDYICRKGEVG--KEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSH  207 (361)
Q Consensus       135 l~~~l~~~~~~~ge~I~~~G~~~--~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~  207 (361)
                      |...++.+.|++|++|+++|+++  +.+|||.+|.|+++     |++.++..+++|++||+ +++.   +.++.++++|.
T Consensus         1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~---~~~~~~~~~A~   76 (202)
T 2zcw_A            1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALF---GQERIYFAEAA   76 (202)
T ss_dssp             -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHH---TCCBCSEEEES
T ss_pred             CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcC---CCCcceEEEEc
Confidence            34678899999999999999999  99999999999997     45688999999999999 8887   78899999999


Q ss_pred             ceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         208 GFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       208 ~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                      ++|+++.| +++|.      |.+...+...+..++....
T Consensus        77 ~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~  108 (202)
T 2zcw_A           77 TDVRLEPL-PENPD------PELLKDLAQHLSQGLAEAY  108 (202)
T ss_dssp             SCEEEEEC-CSSCC------HHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEE-hHhcC------HHHHHHHHHHHHHHHHHHH
Confidence            99999999 98886      8888777777766665544

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=96.72  E-value=3e-05  Score=70.62  Aligned_cols=79  Identities=8%  Similarity=0.092  Sum_probs=60.4

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC--
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS--  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~--  341 (361)
                      ..++|.+ ++.+.+......+  ..|.+++..+++|    ++..+.+..++|+.||.|       .+ +...  ++|.  
T Consensus        59 ~~AiK~i~k~~~~~~~~~~~~--~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~~~--l~e~~~  134 (311)
T 4aw0_A           59 EYAIKILEKRHIIKENKVPYV--TRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGS--FDETCT  134 (311)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSS--CCHHHH
T ss_pred             EEEEEEEEHHHCCCHHHHHHH--HHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcCC--CCHHHH
Confidence            4455655 5555555555666  7899999999988    567999999999999988       23 3233  7776  


Q ss_pred             --ccceeehhhhhhhhcccc
Q psy9025         342 --FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 --~~a~v~~a~~~lH~~~i~  359 (361)
                        +.++++.|++|||++||+
T Consensus       135 ~~~~~qi~~al~ylH~~~Ii  154 (311)
T 4aw0_A          135 RFYTAEIVSALEYLHGKGII  154 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHHHCCCc
Confidence              389999999999999997

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=95.46  E-value=0.00027  Score=63.18  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=52.7

Q ss_pred             chhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----
Q psy9025         279 LLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----  342 (361)
Q Consensus       279 ~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----  342 (361)
                      ++|.+ +..+.+......+  ..|-.+++.+++|    ++..+.+...+|+.||.|       +..+.+  ++|.-    
T Consensus        42 AiK~i~~~~~~~~~~~~~~--~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~g~L~~~l~~~~~--l~e~~~~~~  117 (275)
T 3hyh_A           42 ALKIINKKVLAKSDMQGRI--EREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDK--MSEQEARRF  117 (275)
T ss_dssp             EEEEEECC------CHHHH--HHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCEEHHHHHHHSCS--CCHHHHHHH
T ss_pred             EEEEEeHHHcCCHHHHHHH--HHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCCCCCHHHHHHHcCC--CCHHHHHHH
Confidence            44444 3333334444455  6788888888888    556888889999999988       334334  77763    


Q ss_pred             cceeehhhhhhhhcccc
Q psy9025         343 ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 ~a~v~~a~~~lH~~~i~  359 (361)
                      .++++.|++|||++||+
T Consensus       118 ~~qi~~al~ylH~~~Ii  134 (275)
T 3hyh_A          118 FQQIISAVEYCHRHKIV  134 (275)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCcc
Confidence            89999999999999997

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=95.34  E-value=0.00058  Score=61.93  Aligned_cols=59  Identities=5%  Similarity=0.032  Sum_probs=45.0

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..+|..+++|    ++..+.+...+|+.||.|       .+ +..+  ++|.    +.++++.|++|||++||+
T Consensus        74 ~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~--l~e~~~~~~~~qi~~aL~ylH~~~Ii  148 (304)
T 3ubd_A           74 KMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FTEEDVKFYLAELALALDHLHSLGII  148 (304)
T ss_dssp             ----CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            6789999999988    566888999999999988       22 3233  6666    388999999999999997

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=94.69  E-value=0.0014  Score=60.53  Aligned_cols=59  Identities=8%  Similarity=-0.017  Sum_probs=49.0

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..+|+.++++    ++..+.+...+|+.||.|       ++.+..  ++|.-    ..+++.|++|||++|||
T Consensus       119 ~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~--l~e~~~~~~~~qi~~aL~ylH~~~Ii  192 (346)
T 4fih_A          119 FNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLHAQGVI  192 (346)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            6788999999888    566888999999999988       445444  77763    88999999999999997

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=94.67  E-value=0.00088  Score=67.09  Aligned_cols=96  Identities=4%  Similarity=-0.019  Sum_probs=64.8

Q ss_pred             cccccccccCCCCCCC-----------CCcchhHH-HhhcccCcccchhhhccCccc---ccCcccc----ccccccccc
Q psy9025         260 DASSVLLDRKGEEPKQ-----------APKLLPIV-MQVVPQNSMASKLLRCGSKSL---NKRPHRR----VNRSASADT  320 (361)
Q Consensus       260 ~~~l~~~~~~~~~~~~-----------~~~~l~~~-~~~i~~~~~~~~vl~~~ek~i---~~~~~~~----~~~t~~d~~  320 (361)
                      +.|+.+...+|.+..+           ...++|.+ +..+.......++  ..|+.+   +..+++|    ++..|.+..
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~--~~E~~~l~ll~~~~HP~IV~l~~~f~~~~  265 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA--LNERIMLSLVSTGDCPFIVCMSYAFHTPD  265 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHH--HHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHH--HHHHHHHHHHhhCCCCCEeEEEEEEEECC
Confidence            3455555566654433           34456666 5555555555555  556544   4456677    566999999


Q ss_pred             ccCchhhhh--------hhccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         321 YFHPKQQRR--------LLHQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       321 ~~~~l~~~~--------~~~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ++|+.|+.|        +-+...  ++|.    ++++++.|++|||++|||
T Consensus       266 ~lylVmEy~~GGdL~~~l~~~~~--l~E~~a~~y~~qIl~aL~yLH~~gIi  314 (689)
T 3v5w_A          266 KLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIILGLEHMHNRFVV  314 (689)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             EEEEEEecCCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            999999988        223233  7776    399999999999999997

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=94.20  E-value=0.002  Score=60.99  Aligned_cols=59  Identities=8%  Similarity=-0.017  Sum_probs=48.8

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+|+.++++    ++..|.+...+|+.||.|       ++....  ++|.-    ..+++.|++|||++|||
T Consensus       196 ~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~~--l~e~~~~~~~~qil~aL~ylH~~~Ii  269 (423)
T 4fie_A          196 FNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLHAQGVI  269 (423)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            6788999999888    566888999999999988       344344  77763    88999999999999997

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=93.68  E-value=0.0039  Score=57.23  Aligned_cols=59  Identities=8%  Similarity=-0.072  Sum_probs=46.7

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..+++|    ++..+.+..++|+.||.|       ++ +..+  ++|.-    .+.++.|++|||++|||
T Consensus        98 ~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~--l~e~~~~~~~~qi~~aL~ylH~~~Ii  172 (336)
T 4g3f_A           98 VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGC--LPEDRALYYLGQALEGLEYLHTRRIL  172 (336)
T ss_dssp             THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCce
Confidence            4577888888888    566888899999999988       23 3233  66663    88999999999999997

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=93.30  E-value=0.0018  Score=61.29  Aligned_cols=78  Identities=9%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc---
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF---  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~---  342 (361)
                      .++|.+ +..+.......++  ..|..++..++++    +...+.+..++|+.++.|       ++++..  ++|..   
T Consensus        97 ~AiK~~~k~~~~~~~~~~~~--~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~--~~e~~~~~  172 (410)
T 3v8s_A           97 YAMKLLSKFEMIKRSDSAFF--WEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD--VPEKWARF  172 (410)
T ss_dssp             EEEEEEEHHHHHHTCCCSTH--HHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHCC--CCHHHHHH
T ss_pred             EEEEEEehhhhhhhHHHHHH--HHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHcCC--CCHHHHHH
Confidence            344544 3344444445555  6788888888887    455888999999998877       344333  66653   


Q ss_pred             -cceeehhhhhhhhcccc
Q psy9025         343 -ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 -~a~v~~a~~~lH~~~i~  359 (361)
                       +++++.|++|||++||+
T Consensus       173 ~~~qi~~aL~~LH~~giv  190 (410)
T 3v8s_A          173 YTAEVVLALDAIHSMGFI  190 (410)
T ss_dssp             HHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHCCeE
Confidence             89999999999999987

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=92.84  E-value=0.0017  Score=60.02  Aligned_cols=61  Identities=7%  Similarity=0.008  Sum_probs=46.9

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCC-CCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPT-GHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~-~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+|..++++    ++..+.+...+|+.||.|       ++..... .++|.    +.++++.|++|||++|||
T Consensus        71 ~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~Ii  147 (350)
T 4b9d_A           71 RREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKIL  147 (350)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            5788888888888    566888999999999988       2321111 15554    388999999999999997

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=91.40  E-value=0.013  Score=54.45  Aligned_cols=77  Identities=6%  Similarity=0.072  Sum_probs=43.5

Q ss_pred             chhHH-HhhcccCcccchhhhccCcccc-cCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC---
Q psy9025         279 LLPIV-MQVVPQNSMASKLLRCGSKSLN-KRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS---  341 (361)
Q Consensus       279 ~l~~~-~~~i~~~~~~~~vl~~~ek~i~-~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~---  341 (361)
                      ++|.+ +..+.......++  ..|+.++ +.+.++    +...+.+...+|+.++.|       .+ +...  +++.   
T Consensus        67 AiK~~~~~~~~~~~~~~~~--~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~~~~~~  142 (373)
T 2r5t_A           67 AVKVLQKKAILKKKEEKHI--MSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERC--FLEPRAR  142 (373)
T ss_dssp             EEEEEEGGGBC---------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSS--CCHHHHH
T ss_pred             EEEEEEHHHhhhhHHHHHH--HHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCC--CCHHHHH
Confidence            44444 3344444444455  5666664 447777    445888888888888877       12 2222  5554   


Q ss_pred             -ccceeehhhhhhhhcccc
Q psy9025         342 -FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 -~~a~v~~a~~~lH~~~i~  359 (361)
                       ++++++.|++|||++||+
T Consensus       143 ~~~~qi~~aL~~LH~~giv  161 (373)
T 2r5t_A          143 FYAAEIASALGYLHSLNIV  161 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHCCce
Confidence             389999999999999997

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=91.31  E-value=0.0064  Score=48.07  Aligned_cols=38  Identities=11%  Similarity=-0.056  Sum_probs=29.8

Q ss_pred             eecCCCCcccc---cceeecceeeeehhhHHHHHhhhhhhc
Q psy9025           3 IYPRNNETEAN---TWLRKESVPEQVRGDIESGVDEDEEYH   40 (361)
Q Consensus         3 ~~~~~~~~~~~---~~l~g~~vfayiiG~i~s~~~~~~~~~   40 (361)
                      ++|.+...+..   .|++|+++|++++|.+++.+.+.....
T Consensus        63 i~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  103 (137)
T 4h33_A           63 IVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTN  103 (137)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC-
T ss_pred             CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888877754   488999999999999999887654433

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=90.91  E-value=0.0071  Score=56.88  Aligned_cols=59  Identities=7%  Similarity=-0.040  Sum_probs=43.4

Q ss_pred             ccCcccccCcccc----ccc------ccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcc
Q psy9025         299 CGSKSLNKRPHRR----VNR------SASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESH  357 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~------t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~  357 (361)
                      ..|-.+|+.++++    ++.      .+.+...+|+.||.|       +..+.+  ++|..    ..+++.|++|||++|
T Consensus       101 ~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~g~L~~~i~~~~~--l~~~~~~~~~~qil~al~ylH~~~  178 (398)
T 4b99_A          101 LRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQP--LTLEHVRYFLYQLLRGLKYMHSAQ  178 (398)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCSEEHHHHHTSSSC--CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCCCCHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHCc
Confidence            4688888888887    222      355667889999888       223233  66663    899999999999999


Q ss_pred             cc
Q psy9025         358 IT  359 (361)
Q Consensus       358 i~  359 (361)
                      ||
T Consensus       179 ii  180 (398)
T 4b99_A          179 VI  180 (398)
T ss_dssp             CB
T ss_pred             Cc
Confidence            97

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=90.49  E-value=0.0041  Score=58.84  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=52.6

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC----
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS----  341 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~----  341 (361)
                      .++|.+ +..+.......++  ..|++++..++++    +...+.+..++|+.++.|       ++.+....+++.    
T Consensus        89 vAiK~l~k~~~~~~~~~~~~--~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~  166 (412)
T 2vd5_A           89 YAMKIMNKWDMLKRGEVSCF--REERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARF  166 (412)
T ss_dssp             EEEEEEEHHHHHHHGGGCCH--HHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHH
T ss_pred             EEEEEEeHHHhhhHHHHHHH--HHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHH
Confidence            344444 3333333334445  6678888777776    455888889999998876       233211125555    


Q ss_pred             ccceeehhhhhhhhcccc
Q psy9025         342 FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 ~~a~v~~a~~~lH~~~i~  359 (361)
                      ++++++.|++|||++||+
T Consensus       167 ~~~qi~~aL~~LH~~gii  184 (412)
T 2vd5_A          167 YLAEIVMAIDSVHRLGYV  184 (412)
T ss_dssp             HHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHCCee
Confidence            289999999999999997

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=90.40  E-value=0.0068  Score=55.58  Aligned_cols=79  Identities=6%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCC--
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNS--  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~--  341 (361)
                      ..++|.+ +..+.......++  ..|..++..++++    +...+.+...+|+.++.|        +.+...  +++.  
T Consensus        32 ~vaiK~~~~~~~~~~~~~~~~--~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~~~~~  107 (337)
T 1o6l_A           32 YYAMKILRKEVIIAKDEVAHT--VTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV--FTEERA  107 (337)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSC--CCHHHH
T ss_pred             EEEEEEEeHHHhhhhhHHHHH--HHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCC--CCHHHH
Confidence            3445544 3333333344455  5678888887777    445788888888888776        122223  5555  


Q ss_pred             --ccceeehhhhhhhhcccc
Q psy9025         342 --FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 --~~a~v~~a~~~lH~~~i~  359 (361)
                        ++++++.|++|||++||+
T Consensus       108 ~~~~~qi~~aL~~LH~~~iv  127 (337)
T 1o6l_A          108 RFYGAEIVSALEYLHSRDVV  127 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHHHHHHHCCee
Confidence              289999999999999997

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=90.15  E-value=0.0071  Score=54.91  Aligned_cols=80  Identities=10%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc--
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF--  342 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~--  342 (361)
                      ..++|.+ +..+.......++  ..|..++..+.++    +...+.+...+|+.++.|       ++++. ..+++..  
T Consensus        33 ~~aiK~~~~~~~~~~~~~~~~--~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~  109 (318)
T 1fot_A           33 YYAMKVLKKEIVVRLKQVEHT--NDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS-QRFPNPVAK  109 (318)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT-SSCCHHHHH
T ss_pred             EEEEEEEEHHHhhhhhHHHHH--HHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHc-CCCCHHHHH
Confidence            3344444 3333333344445  5677888887777    455788888888888876       23311 1155542  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        +++++.|++|||++||+
T Consensus       110 ~~~~qi~~aL~~LH~~~iv  128 (318)
T 1fot_A          110 FYAAEVCLALEYLHSKDII  128 (318)
T ss_dssp             HHHHHHHHHHHHHHTTTEE
T ss_pred             HHHHHHHHHHHHHHHCCcc
Confidence              89999999999999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=90.10  E-value=0.0074  Score=55.61  Aligned_cols=77  Identities=12%  Similarity=0.055  Sum_probs=51.7

Q ss_pred             chhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhc-cCCCCCCCCc---
Q psy9025         279 LLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLH-QTPTGHNNSF---  342 (361)
Q Consensus       279 ~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~-~~~~~~~~~~---  342 (361)
                      ++|.+ +..+.......++  ..|..++..+.++    +...+.+...+|+.++.|       .+. ...  +++..   
T Consensus        70 aiK~~~~~~~~~~~~~~~~--~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~--~~~~~~~~  145 (350)
T 1rdq_E           70 AMKILDKQKVVKLKQIEHT--LNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGR--FSEPHARF  145 (350)
T ss_dssp             EEEEEEHHHHHHTTCHHHH--HHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCC--CCHHHHHH
T ss_pred             EEEEEEhHHhccHHHHHHH--HHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCC--CCHHHHHH
Confidence            44444 3333333444455  5688888888777    445788888888888876       222 223  55552   


Q ss_pred             -cceeehhhhhhhhcccc
Q psy9025         343 -ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 -~a~v~~a~~~lH~~~i~  359 (361)
                       +++++.|++|||++||+
T Consensus       146 ~~~qi~~aL~~LH~~~iv  163 (350)
T 1rdq_E          146 YAAQIVLTFEYLHSLDLI  163 (350)
T ss_dssp             HHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHCCcc
Confidence             89999999999999986

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=88.60  E-value=0.019  Score=56.70  Aligned_cols=61  Identities=8%  Similarity=-0.037  Sum_probs=46.7

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..+|..++++    ++..|.+...+|+.|+.|       .+.+....++|.    +.++++.|++|||++||+
T Consensus       202 ~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~ii  277 (573)
T 3uto_A          202 RKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYV  277 (573)
T ss_dssp             HHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            5678888888888    566889999999999988       232111125555    288999999999999997

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=88.53  E-value=0.012  Score=58.07  Aligned_cols=81  Identities=9%  Similarity=0.057  Sum_probs=54.3

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhc-cCCCCCCCCc-
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLH-QTPTGHNNSF-  342 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~-~~~~~~~~~~-  342 (361)
                      ..++|.+ +..+.......++  ..|..++..++++    +...+.+...+|+.++.|       .+. ....++++.. 
T Consensus       211 ~vAvK~l~k~~~~~~~~~~~~--~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~  288 (576)
T 2acx_A          211 MYACKKLEKKRIKKRKGEAMA--LNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARA  288 (576)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHH
T ss_pred             EEEEEEEEhHhhhhhHHHHHH--HHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHH
Confidence            4455555 4444444444555  6788888888877    444788888888888876       222 1222355552 


Q ss_pred             ---cceeehhhhhhhhcccc
Q psy9025         343 ---ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 ---~a~v~~a~~~lH~~~i~  359 (361)
                         +++++.|++|||++||+
T Consensus       289 ~~i~~qIl~aL~yLH~~gIv  308 (576)
T 2acx_A          289 VFYAAEICCGLEDLHRERIV  308 (576)
T ss_dssp             HHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHHHCCEe
Confidence               89999999999999987

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=88.19  E-value=0.013  Score=55.09  Aligned_cols=77  Identities=9%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             chhHH-HhhcccCcccchhhhccCcccccCc-ccc----cccccccccccCchhhhh--------hhccCCCCCCCC---
Q psy9025         279 LLPIV-MQVVPQNSMASKLLRCGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNS---  341 (361)
Q Consensus       279 ~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~---  341 (361)
                      ++|.+ +..+.+......+  ..|+.++..+ +++    +...+.+...+|+.++.|        +.+...  +++.   
T Consensus        81 AvK~~~k~~~~~~~~~~~~--~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~--l~~~~~~  156 (396)
T 4dc2_A           81 AMRVVKKELVNDDEDIDWV--QTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRK--LPEEHAR  156 (396)
T ss_dssp             EEEEEEGGGTC----CCHH--HHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSS--CCHHHHH
T ss_pred             EEEEEEhhhccCHHHHHHH--HHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHcCC--CCHHHHH
Confidence            44444 3333333334444  5677777663 565    455788888888888877        122223  5555   


Q ss_pred             -ccceeehhhhhhhhcccc
Q psy9025         342 -FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 -~~a~v~~a~~~lH~~~i~  359 (361)
                       ++++++.|++|||++||+
T Consensus       157 ~~~~qi~~aL~~LH~~giv  175 (396)
T 4dc2_A          157 FYSAEISLALNYLHERGII  175 (396)
T ss_dssp             HHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHHHHHHCCEE
Confidence             289999999999999997

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=88.17  E-value=0.011  Score=56.18  Aligned_cols=68  Identities=7%  Similarity=0.111  Sum_probs=48.3

Q ss_pred             CcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC----ccceeehhhhhhh
Q psy9025         290 NSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS----FECQVTVHREDIH  354 (361)
Q Consensus       290 ~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~----~~a~v~~a~~~lH  354 (361)
                      .....++  ..|+.++..++++    +...+.+...+|+.++.|       ++.+....++|.    ++++++.|++|||
T Consensus       115 ~~~~~~~--~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH  192 (437)
T 4aw2_A          115 RAETACF--REERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH  192 (437)
T ss_dssp             TTTTCCH--HHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3334444  6678888777777    445788888888888876       344212226665    3899999999999


Q ss_pred             hcccc
Q psy9025         355 ESHIT  359 (361)
Q Consensus       355 ~~~i~  359 (361)
                      ++||+
T Consensus       193 ~~gii  197 (437)
T 4aw2_A          193 QLHYV  197 (437)
T ss_dssp             HTTEE
T ss_pred             hCCeE
Confidence            99987

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=87.44  E-value=0.016  Score=53.37  Aligned_cols=65  Identities=5%  Similarity=-0.038  Sum_probs=45.3

Q ss_pred             cccchhhhccCcccccCc-ccc----cccccccccccCchhhhh-------hhc-cCCCCCCCC----ccceeehhhhhh
Q psy9025         291 SMASKLLRCGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR-------LLH-QTPTGHNNS----FECQVTVHREDI  353 (361)
Q Consensus       291 ~~~~~vl~~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~-------~~~-~~~~~~~~~----~~a~v~~a~~~l  353 (361)
                      ....++  ..|+.++..+ .++    +...+.+...+|+.++.|       .+. ...  +++.    ++++++.|++||
T Consensus        62 ~~~~~~--~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~L  137 (353)
T 2i0e_A           62 DDVECT--MVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGR--FKEPHAVFYAAEIAIGLFFL  137 (353)
T ss_dssp             TCHHHH--HHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHH--HHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHH
Confidence            333444  5677777764 455    445788888888888877       222 123  5555    289999999999


Q ss_pred             hhcccc
Q psy9025         354 HESHIT  359 (361)
Q Consensus       354 H~~~i~  359 (361)
                      |++||+
T Consensus       138 H~~giv  143 (353)
T 2i0e_A          138 QSKGII  143 (353)
T ss_dssp             HHTTCB
T ss_pred             HHCCEE
Confidence            999997

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=87.32  E-value=0.016  Score=54.19  Aligned_cols=66  Identities=9%  Similarity=0.098  Sum_probs=46.7

Q ss_pred             cccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC----ccceeehhhhhhhh
Q psy9025         291 SMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS----FECQVTVHREDIHE  355 (361)
Q Consensus       291 ~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~----~~a~v~~a~~~lH~  355 (361)
                      .....+  ..|..++..++++    +...+.+...+|+.++.|       .+... ..+++.    +++.++.|+.|||+
T Consensus        57 ~~~~~~--~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~  133 (384)
T 4fr4_A           57 NEVRNV--FKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN-VHFKEETVKLFICELVMALDYLQN  133 (384)
T ss_dssp             TCHHHH--HHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333444  5678888888777    455788888888888776       23311 125555    28899999999999


Q ss_pred             cccc
Q psy9025         356 SHIT  359 (361)
Q Consensus       356 ~~i~  359 (361)
                      +||+
T Consensus       134 ~giv  137 (384)
T 4fr4_A          134 QRII  137 (384)
T ss_dssp             TTEE
T ss_pred             CCce
Confidence            9997

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=87.29  E-value=5.4  Score=29.57  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=46.7

Q ss_pred             cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEE
Q psy9025         139 LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFV  214 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~  214 (361)
                      +....+.+|..+-.--.+.+.+++|++|.+.+.-++. ...+.+||.+=..        ......+.+.+++.++.
T Consensus        38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~ip--------~~~~H~~~~~~~~~~~~  104 (114)
T 3fjs_A           38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-QRRLHQGDLLYLG--------AGAAHDVNAITNTSLLV  104 (114)
T ss_dssp             EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-EEEECTTEEEEEC--------TTCCEEEEESSSEEEEE
T ss_pred             EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-EEEECCCCEEEEC--------CCCcEEEEeCCCcEEEE
Confidence            4456788898877655666799999999999986554 4678999877432        22334566667765443

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=86.85  E-value=0.012  Score=54.06  Aligned_cols=59  Identities=8%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             ccCcccccCc-ccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|+.++..+ .++    +...+.+...+|+.++.|       .+ +...  +++.    ++++++.|++|||++||+
T Consensus        57 ~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~--l~~~~~~~~~~qi~~aL~~LH~~~iv  132 (345)
T 3a8x_A           57 QTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRK--LPEEHARFYSAEISLALNYLHERGII  132 (345)
T ss_dssp             HHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCce
Confidence            5677777664 555    445778888888888876       12 2223  5555    289999999999999997

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=86.47  E-value=4.1  Score=29.99  Aligned_cols=66  Identities=11%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         141 PVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       141 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      ...+.+|..+-.-..+...+++|++|.+.+.-++. ...+.+||.+=..+      +.+.  .+.+.+++.++.+
T Consensus        42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd~i~i~~------~~~H--~~~~~~~~~~~~i  107 (114)
T 2ozj_A           42 LFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPEDVLMVPA------HKIH--AIAGKGRFKMLQI  107 (114)
T ss_dssp             EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTCEEEECT------TCCB--EEEEEEEEEEEEE
T ss_pred             EEEECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCCEEEECC------CCcE--EEEeCCCcEEEEE
Confidence            34456776654444566789999999999986554 45799999773322      3333  3344466666554

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=86.39  E-value=0.013  Score=54.05  Aligned_cols=59  Identities=5%  Similarity=0.015  Sum_probs=42.3

Q ss_pred             ccCcccccCc-ccc----cccccccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|+.++..+ .++    +...+.+...+|+.++.|       .+ ....  +++.    ++++++.|++|||++||+
T Consensus        71 ~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~giv  146 (353)
T 3txo_A           71 MTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRR--FDEARARFYAAEIISALMFLHDKGII  146 (353)
T ss_dssp             HHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            5667777664 455    455788888888888877       12 2223  5555    389999999999999997

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=86.33  E-value=4.2  Score=34.44  Aligned_cols=68  Identities=12%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         139 LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      +....+.+|+.+-..--+.+.+++|++|.+++.-++.. ..+.+||++=-        .......+.|.+++.++.+
T Consensus        39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~~--------p~~~~H~~~a~~~~~~l~i  106 (227)
T 3rns_A           39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGDFLEI--------TANHNYSIEARDNLKLIEI  106 (227)
T ss_dssp             EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTEEEEE--------CSSCCEEEEESSSEEEEEE
T ss_pred             EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCCEEEE--------CCCCCEEEEECCCcEEEEE
Confidence            45677899999988878899999999999999855433 67899987632        2333556778899998877

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=86.27  E-value=0.17  Score=41.11  Aligned_cols=40  Identities=10%  Similarity=0.032  Sum_probs=32.0

Q ss_pred             eecCCCCccccc---ceeecceeeeehhhHHHHHhhhhhhccc
Q psy9025           3 IYPRNNETEANT---WLRKESVPEQVRGDIESGVDEDEEYHDS   42 (361)
Q Consensus         3 ~~~~~~~~~~~~---~l~g~~vfayiiG~i~s~~~~~~~~~~~   42 (361)
                      ++|.+...+..+   +++|.+++++++|.+++.+.+.......
T Consensus        87 i~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~  129 (166)
T 3pjs_K           87 LYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ  129 (166)
T ss_dssp             SCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred             CCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578888888664   7799999999999999998876554443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=85.75  E-value=0.013  Score=53.83  Aligned_cols=59  Identities=7%  Similarity=0.011  Sum_probs=42.5

Q ss_pred             ccCcccccCc-ccc----cccccccccccCchhhhh-------hhc-cCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR-------LLH-QTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~-------~~~-~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|+.++..+ .++    +...+.+...+|+.++.|       .+. ...  +++.    ++++++.|++|||++||+
T Consensus        65 ~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~~iv  140 (345)
T 1xjd_A           65 MVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHK--FDLSRATFYAAEIILGLQFLHSKGIV  140 (345)
T ss_dssp             HHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHCCeE
Confidence            5677777663 566    455888888888888876       222 123  5554    289999999999999997

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=84.93  E-value=0.067  Score=48.06  Aligned_cols=61  Identities=11%  Similarity=0.043  Sum_probs=45.1

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhcc------------CCCCCCCC----ccceeehhhh
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQ------------TPTGHNNS----FECQVTVHRE  351 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~------------~~~~~~~~----~~a~v~~a~~  351 (361)
                      ..|-.+|.++++|    ++..+.+...+|+.||.|       ++++            .+..+++.    ++..++.|+.
T Consensus        63 ~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~  142 (299)
T 4asz_A           63 HREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMV  142 (299)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            5688888898888    455777888888888887       2321            11224544    2889999999


Q ss_pred             hhhhcccc
Q psy9025         352 DIHESHIT  359 (361)
Q Consensus       352 ~lH~~~i~  359 (361)
                      |||++|||
T Consensus       143 yLH~~~ii  150 (299)
T 4asz_A          143 YLASQHFV  150 (299)
T ss_dssp             HHHHTTCC
T ss_pred             HHHhCCcc
Confidence            99999997

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=84.71  E-value=0.075  Score=47.73  Aligned_cols=60  Identities=10%  Similarity=0.007  Sum_probs=38.5

Q ss_pred             ccCcccccCcccc-c---cccc------------ccccccCchhhhh-------hhccCCCCCCCC-------ccceeeh
Q psy9025         299 CGSKSLNKRPHRR-V---NRSA------------SADTYFHPKQQRR-------LLHQTPTGHNNS-------FECQVTV  348 (361)
Q Consensus       299 ~~ek~i~~~~~~~-~---~~t~------------~d~~~~~~l~~~~-------~~~~~~~~~~~~-------~~a~v~~  348 (361)
                      ..|-.+|..+++| +   +..+            .+..++|+.||.|       ++++.. .+.+.       +..+++.
T Consensus        51 ~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~-~~~~~~~~~~~~i~~qi~~  129 (299)
T 4g31_A           51 MREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRC-TIEERERSVCLHIFLQIAE  129 (299)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCC-SGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcC-CCChhHHHHHHHHHHHHHH
Confidence            4577778887777 2   2222            2334688899888       233211 12221       2678999


Q ss_pred             hhhhhhhcccc
Q psy9025         349 HREDIHESHIT  359 (361)
Q Consensus       349 a~~~lH~~~i~  359 (361)
                      |++|||++||+
T Consensus       130 al~ylH~~~Ii  140 (299)
T 4g31_A          130 AVEFLHSKGLM  140 (299)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHCcCc
Confidence            99999999997

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=83.73  E-value=0.05  Score=48.71  Aligned_cols=59  Identities=10%  Similarity=-0.031  Sum_probs=41.8

Q ss_pred             ccCcccccCcccc-c---cccc----ccccccCchhhhh-------hh-ccCCCCCCCC----ccceeehhhhhhhhcc-
Q psy9025         299 CGSKSLNKRPHRR-V---NRSA----SADTYFHPKQQRR-------LL-HQTPTGHNNS----FECQVTVHREDIHESH-  357 (361)
Q Consensus       299 ~~ek~i~~~~~~~-~---~~t~----~d~~~~~~l~~~~-------~~-~~~~~~~~~~----~~a~v~~a~~~lH~~~-  357 (361)
                      ..|-.+|..+++| +   +..+    ....++|+.||.|       ++ +..+  +++.    ++..++.|++|||++| 
T Consensus        73 ~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~~--l~~~~~~~~~~qi~~aL~ylH~~~~  150 (290)
T 3fpq_A           73 KEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKV--MKIKVLRSWCRQILKGLQFLHTRTP  150 (290)
T ss_dssp             HHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            5678888888888 3   3333    3356788888877       23 2233  5555    3789999999999999 


Q ss_pred             -cc
Q psy9025         358 -IT  359 (361)
Q Consensus       358 -i~  359 (361)
                       ||
T Consensus       151 ~Ii  153 (290)
T 3fpq_A          151 PII  153 (290)
T ss_dssp             CCC
T ss_pred             CEE
Confidence             86

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=83.56  E-value=0.04  Score=51.00  Aligned_cols=57  Identities=9%  Similarity=-0.017  Sum_probs=42.1

Q ss_pred             ccCcccccCc-ccc----cccccccccccCchhhhh-------hhccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRP-HRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~-~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..+ .++    +...+.+..++|+.|+.|       +++  .  +++.    +..+++.|++|||++||+
T Consensus        67 ~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~--~--l~~~~~~~~~~qll~al~ylH~~gIi  139 (361)
T 4f9c_A           67 AAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILN--S--LSFQEVREYMLNLFKALKRIHQFGIV  139 (361)
T ss_dssp             HHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHT--T--CCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHHHHc--C--CCHHHHHHHHHHHHHHHHHHHHCCeE
Confidence            4566666664 455    556888889999999887       232  2  4544    388999999999999997

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=82.68  E-value=11  Score=30.20  Aligned_cols=89  Identities=13%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEe-cceEEEEEEe-
Q psy9025         139 LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRS-HGFSNLFVLN-  216 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A-~~~~~~~~l~-  216 (361)
                      +....+.+|..+-..--....+++|++|.+.+.-++. ...+.+||++=..+      +.+....... .+++.++.+- 
T Consensus        58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~ip~------~~~H~~~n~~~~~~~~~l~i~~  130 (167)
T 3ibm_A           58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDCVYIAP------HAWHQIHATGANEPLGFLCIVD  130 (167)
T ss_dssp             EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCEEEECT------TCCEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCEEEECC------CCcEEEEeCCCCCCEEEEEEEe
Confidence            3455667777654433457889999999999985554 56789999773322      3343333333 3455544442 


Q ss_pred             ---------HHHHHHHHHHCHHHHHHH
Q psy9025         217 ---------KDDLNEAIEYYPNAQEVL  234 (361)
Q Consensus       217 ---------~~~f~~ll~~~p~~~~~~  234 (361)
                               ...-..-+..+|.++.++
T Consensus       131 ~~~d~p~~p~~~~~~~l~~~~~~~~~~  157 (167)
T 3ibm_A          131 SDRDRPQRPDADDLARMCADPAVARRI  157 (167)
T ss_dssp             SSCCCCBCCCHHHHHHHTTSHHHHHHC
T ss_pred             CCcCcccCCCHHHHHHHHcChHHHHhh
Confidence                     233333455677776554

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=81.60  E-value=0.12  Score=47.03  Aligned_cols=61  Identities=8%  Similarity=-0.075  Sum_probs=44.1

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCC--------------CCCCCC----ccceeehh
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTP--------------TGHNNS----FECQVTVH  349 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~--------------~~~~~~----~~a~v~~a  349 (361)
                      ..|-.+|..++|+    ++..+.+...+|+.||.|       ++++..              ..+++.    ++..++.|
T Consensus        91 ~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~g  170 (329)
T 4aoj_A           91 QREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAG  170 (329)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHH
Confidence            5688889999888    455777888888898887       232110              013333    28889999


Q ss_pred             hhhhhhcccc
Q psy9025         350 REDIHESHIT  359 (361)
Q Consensus       350 ~~~lH~~~i~  359 (361)
                      +.|||++|||
T Consensus       171 l~yLH~~~ii  180 (329)
T 4aoj_A          171 MVYLAGLHFV  180 (329)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHhcCCee
Confidence            9999999997

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=81.41  E-value=0.041  Score=53.89  Aligned_cols=81  Identities=11%  Similarity=0.048  Sum_probs=52.1

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh-------hhccC---CCCCCCC
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQT---PTGHNNS  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~---~~~~~~~  341 (361)
                      ..++|.+ +..+........+  ..|..++..++++    +...+.+...+|+.++.|       .+...   ...+++.
T Consensus       212 ~vAiK~l~k~~~~~~~~~~~~--~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~  289 (543)
T 3c4z_A          212 LYACKKLNKKRLKKRKGYQGA--MVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEP  289 (543)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHH
T ss_pred             EEEEEEEEhHHhhhhHHHHHH--HHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHH
Confidence            3444544 3333333334445  5688888888877    345778888888888776       12211   1125554


Q ss_pred             c----cceeehhhhhhhhcccc
Q psy9025         342 F----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 ~----~a~v~~a~~~lH~~~i~  359 (361)
                      .    +++++.|++|||++||+
T Consensus       290 ~~~~~~~qi~~aL~~LH~~gIv  311 (543)
T 3c4z_A          290 RAIFYTAQIVSGLEHLHQRNII  311 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCc
Confidence            2    88999999999999987

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=81.37  E-value=13  Score=26.99  Aligned_cols=68  Identities=12%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         139 LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      +....+.+|..+-.--.....+++|.+|.+.+.-++.. ..+.+||++=..+      +.+  ..+.+.+++.++.+
T Consensus        42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip~------~~~--H~~~~~~~~~~~~v  109 (115)
T 1yhf_A           42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET-YRVAEGQTIVMPA------GIP--HALYAVEAFQMLLV  109 (115)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTCEEEECT------TSC--EEEEESSCEEEEEE
T ss_pred             EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE-EEECCCCEEEECC------CCC--EEEEECCCceEEEE
Confidence            44556788887654444467899999999999855543 5789999873221      233  34555667766654

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=81.15  E-value=3.9  Score=29.23  Aligned_cols=49  Identities=18%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             ceEEeCCCCEEEeCCCCCC-eEEEEEeeEEEEEeCcE-EEEEeCCCCeech
Q psy9025         140 RPVLYLPGDYICRKGEVGK-EMYIVKTGQVQVVSGET-VLATLTEGSVFGE  188 (361)
Q Consensus       140 ~~~~~~~ge~I~~~G~~~~-~ly~I~~G~v~v~~~~~-~~~~l~~Gd~fGe  188 (361)
                      ....+.||...-..--+.. .+++|++|.+.+.-++. ....+.+||.+=.
T Consensus        21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~   71 (97)
T 2fqp_A           21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTR   71 (97)
T ss_dssp             EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEE
T ss_pred             EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEe
Confidence            3456778776432223344 59999999999986553 5678999998733

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=80.93  E-value=0.16  Score=45.70  Aligned_cols=60  Identities=12%  Similarity=0.028  Sum_probs=40.9

Q ss_pred             ccCcccccCcccc-c---ccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR-V---NRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~-~---~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+|..++++ +   +.-+ ....+|+.||.|       .++.....+++.-    +..++.|++|||++|||
T Consensus        80 ~~E~~il~~l~HpNIV~l~g~~-~~~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~Ii  154 (307)
T 3omv_A           80 RNEVAVLRKTRHVNILLFMGYM-TKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNII  154 (307)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHhCCCCCEeeEEEEE-ECCeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            5678888888888 2   2223 234467888877       3432222255542    88999999999999997

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=80.65  E-value=0.059  Score=54.22  Aligned_cols=96  Identities=9%  Similarity=-0.012  Sum_probs=58.7

Q ss_pred             cccccccccCCCCCCCC-----------CcchhHH-HhhcccCcccchhhhccCcccccCc-ccc----ccccccccccc
Q psy9025         260 DASSVLLDRKGEEPKQA-----------PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRP-HRR----VNRSASADTYF  322 (361)
Q Consensus       260 ~~~l~~~~~~~~~~~~~-----------~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~-~~~----~~~t~~d~~~~  322 (361)
                      ..++.+...+|.+..+.           ..++|.+ +..+.........  ..|+.++..+ +++    +...+.+...+
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~--~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECT--MVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHH--HHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHH--HHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            34555666666655433           2344444 2223233333444  5677777764 444    44578888888


Q ss_pred             Cchhhhh-------hhc-cCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         323 HPKQQRR-------LLH-QTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       323 ~~l~~~~-------~~~-~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      |+.|+.|       .+. ...  +++.    +++.++.|++|||++||+
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~~--~~~~~~~~~~~qi~~aL~~LH~~gIi  464 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVGR--FKEPHAVFYAAEIAIGLFFLQSKGII  464 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred             EEEEeCcCCCcHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHhCCeE
Confidence            8888877       222 123  5555    399999999999999997

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=80.49  E-value=15  Score=27.54  Aligned_cols=48  Identities=19%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             ceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechh
Q psy9025         140 RPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEI  189 (361)
Q Consensus       140 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~  189 (361)
                      ....+.+|..+-.. ...+.+++|++|.+.+.-++. ...+++||++--.
T Consensus        43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~-~~~l~~GD~v~ip   90 (119)
T 3lwc_A           43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGE-TVTAGPGEIVYMP   90 (119)
T ss_dssp             EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTE-EEEECTTCEEEEC
T ss_pred             EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCE-EEEECCCCEEEEC
Confidence            34567888766543 377899999999999986544 4579999987443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	2e-16
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	3e-15
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	5e-14
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	1e-13
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	3e-13
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	4e-13
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	7e-13
d1q3ea_	193	b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu	6e-12
d1i5za2	132	b.82.3.2 (A:6-137) Catabolite gene activator prote	1e-09
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	1e-09
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	4e-09
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	9e-09
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	2e-08
d1o5la1	129	b.82.3.2 (A:1-129) CRP-like transcriptional regula	1e-05

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKT 165
           K    +    + + K  LF   D+    ++   + PV ++ G+ + ++G+ G   Y++  
Sbjct: 10  KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQ 69

Query: 166 GQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIE 225
           G++ V        ++ EG  FGE++L+       R A V++     L+ +++D     + 
Sbjct: 70  GEMDVYVNNEWATSVGEGGSFGELALI---YGTPRAATVKAKTNVKLWGIDRDSYRRILM 126

Query: 226 YYP 228
              
Sbjct: 127 GST 129

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 69.6 bits (169), Expect = 3e-15
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS----- 172
           + +V LF++ DE LL  +  +L+P L+    Y+ R+G+   EM  +  G+++ V+     
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 173 -GETVLATLTEGSVFGEISLL------ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIE 225
            G    + L EG   G+  L       + +     T  V++      F L  D+L     
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 226 YYP 228
            + 
Sbjct: 128 QFR 130

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (162), Expect = 5e-14
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 15/138 (10%)

Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV------ 171
           +  +   +  + +   ++V  +   +Y  G+ I  +G+     +IV++G+V++       
Sbjct: 4   IESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGK 63

Query: 172 -----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEY 226
                +G   +A    G  FGE+   AL     R A   + G      ++       +  
Sbjct: 64  SDIEENGAVEIARCLRGQYFGEL---ALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGP 120

Query: 227 YPN-AQEVLKKKARQLIK 243
                +  +     QL+ 
Sbjct: 121 CMEIMKRNIATYEEQLVA 138

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 65.6 bits (159), Expect = 1e-13
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV 170
              + Q ++ V LFQ    A+L E+V  LR      G  ICR GE G  M+ V  G V V
Sbjct: 6   FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65

Query: 171 VSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA 230
            +   V   L  G+ FGE++   L     R+A V +    +L  L+  D        P  
Sbjct: 66  ATPNPV--ELGPGAFFGEMA---LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEI 120

Query: 231 QEVLKKKARQ 240
            E+ +K A +
Sbjct: 121 AEIFRKTALE 130

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 96  KILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGE 155
             L+  PL+ ++   +++    L  V+ F+     LLR++ L         G  + R+G+
Sbjct: 5   ACLDKRPLE-RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGD 63

Query: 156 VGKEMYIVKTGQVQVV-------SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG 208
           +G   Y V  G + V             + TL  G+ FGE  L        R A + +  
Sbjct: 64  IGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILD----NTPRHATIVTRE 119

Query: 209 FSNLFVLNKDDLNEAIEYYP 228
            S L  + ++D     E Y 
Sbjct: 120 SSELLRIEQEDFKALWEKYR 139

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKT 165
           KTD   N   +    + LF++ D   + +++  +   L   G+++  +G+ G   Y++  
Sbjct: 6   KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 65

Query: 166 GQVQV----VSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLN 221
           G   +          +        FGE++L+       R A + +     L+ L++    
Sbjct: 66  GTFDIYVKCDGVGRCVGNYDNRGSFGELALM---YNTPRAATITATSPGALWGLDRVTFR 122

Query: 222 EAIE 225
             I 
Sbjct: 123 RIIV 126

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.9 bits (152), Expect = 7e-13
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS--- 172
           + LSKV + +  D+     +   L PV +  G  I  +GE G E +I+  G   V+    
Sbjct: 2   EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 61

Query: 173 ---GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN 229
                  +  L     FGEI+LL       R A V + G      L++      +     
Sbjct: 62  ENEEFVEVGRLGPSDYFGEIALL---MNRPRAATVVARGPLKCVKLDRPRFERVLGPCS- 117

Query: 230 AQEVLKKKARQLIK 243
             ++LK+  +Q   
Sbjct: 118 --DILKRNIQQYNS 129

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 6e-12
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 89  SSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGD 148
               DE+ IL  L   L+ ++      + ++ + LF + D   +  ++ KL+  ++ PGD
Sbjct: 41  GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGD 100

Query: 149 YICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG 208
           YI R+G +GK+MY ++ G V V++       L++GS FGEI    L    RRTA VR+  
Sbjct: 101 YIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEI---CLLTRGRRTASVRADT 157

Query: 209 FSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ 240
           +  L+ L+ D+ NE +E YP  +   +  A  
Sbjct: 158 YCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 189

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 129 EALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV-----VSGETVLATLTEG 183
           +  L   +       Y     +  +GE  + +Y +  G V V        E +L+ L +G
Sbjct: 3   DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQG 62

Query: 184 SVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK 243
              GE+ L        R+A VR+     +  ++     + I+  P+          +L  
Sbjct: 63  DFIGELGL--FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDI-------LMRLSA 113

Query: 244 ENAARERVSQPKLSTM 259
           + A R +V+  K+  +
Sbjct: 114 QMARRLQVTSEKVGNL 129

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 4/120 (3%)

Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYL-PGDYICRKGEVGKEMYIVKTGQVQ 169
           + +    L  ++        + REL   L    +   G  +  +GE G   YI+  G V 
Sbjct: 5   LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 64

Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG-FSNLFVLNKDDLNEAIEYYP 228
           VV        +       +   LAL     R A +       +   ++K+D N  +    
Sbjct: 65  VVIYGKG--VVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 122

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 10/140 (7%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 122 QLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV--SGETVLAT 179
            ++   +E     L  +++P        +  +G++   ++ +  G+++++          
Sbjct: 7   DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI 66

Query: 180 LTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKAR 239
                      +         ++   +   S +  +  + +   ++   +         R
Sbjct: 67  SRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSF-------CR 119

Query: 240 QLIKENAARERVSQPKLSTM 259
             +K  A     ++ +  T+
Sbjct: 120 YFLKALAKELGYAERRTVTL 139

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 51.5 bits (122), Expect = 9e-09
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 16/149 (10%)

Query: 115 IQTLSKVQLFQDCDEALLRELVLK--LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS 172
             TL ++ LFQ         ++ K  L  + +  G+ I + G    ++  +  G++ +V+
Sbjct: 5   FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVT 64

Query: 173 -----GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY 227
                  TV+  +    +    S           +   +H   +   ++K  +   +  Y
Sbjct: 65  NAKENIYTVIEQIEAPYLIEPQS--LFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY 122

Query: 228 PNAQEVLKKKARQLIKENAARERVSQPKL 256
                         +   + R +    +L
Sbjct: 123 DIF-------RLNYMNIVSNRAQNLYSRL 144

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----GETVLATLTEGSVF 186
           L +L+       Y     I   G+  + ++ +  G V ++       E ++  L  G  F
Sbjct: 5   LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 64

Query: 187 GEISLL-ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN 245
           GE+ L         R+A VR+     +  ++     E  +               L  + 
Sbjct: 65  GELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEI-------LYTLGSQM 117

Query: 246 AARERVSQPKLSTM 259
           A R R +  K+  +
Sbjct: 118 ADRLRKTTRKVGDL 131

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 14/133 (10%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVF 186
           L++L+   + +++  G+ +  + +  +++ I+  G ++            +  +    + 
Sbjct: 3   LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62

Query: 187 GEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA 246
                   +   R   +V +   S +  + K+   + +                 +K+ +
Sbjct: 63  ASGF--IFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDREL-------LLFFLKDVS 113

Query: 247 ARERVSQPKLSTM 259
              RV   KL  +
Sbjct: 114 EHFRVVSEKLFFL 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.97
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.88
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.88
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.87
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.87
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.86
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.86
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.84
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.84
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.83
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.83
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.8
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.78
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.75
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.75
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.74
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.63
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	95.9
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	94.67
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	93.62
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	93.54
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	93.14
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	92.85
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	92.49
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	92.48
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	91.9
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	91.31
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	91.06
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	90.58
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	90.56
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	90.41
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	89.98
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	89.73
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	89.46
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	88.75
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	88.36
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	88.16
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	87.23
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	86.81
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	86.67
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	85.73
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	85.7
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	84.51
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	84.01
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	82.39

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.6e-31  Score=224.70  Aligned_cols=180  Identities=30%  Similarity=0.517  Sum_probs=164.7

Q ss_pred             HHHHHHHHH------HhhHHHHHHHHHHHhCCCCCCCCCcCCCCcccHHHHHhhCCHhHHHHHHHHHHHHHhccCccccc
Q psy9025          53 IQERIRHLA------HVFTERAQKIKRILDFPPTPSSSTTLSSSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQD  126 (361)
Q Consensus        53 ~q~~~~~~~------~~~~~l~~~i~~y~~~~~~~~~~~~~~~~~~~e~~ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~  126 (361)
                      |+++++.++      ++|.+++.+|++||+|.|.        .+..+++.+++.+|+.|+.++..+++.++|+++|+|++
T Consensus         7 f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~--------~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~   78 (193)
T d1q3ea_           7 YQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ--------GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFAN   78 (193)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT--------TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh--------cccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHh
Confidence            455555554      4678999999999999996        34568889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEe
Q psy9025         127 CDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRS  206 (361)
Q Consensus       127 l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A  206 (361)
                      ++..++..|+..++...|.||++|+++|++++.+|||.+|.|++..++.....+++|++||+.+++.   +.+++++++|
T Consensus        79 ~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~---~~~~~~~~~a  155 (193)
T d1q3ea_          79 ADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRA  155 (193)
T ss_dssp             SCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHH---CSBCSSEEEE
T ss_pred             hhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeeeeeeccC---CCccccccee
Confidence            9999999999999999999999999999999999999999999996665667899999999999998   8999999999


Q ss_pred             cceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q psy9025         207 HGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK  243 (361)
Q Consensus       207 ~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~  243 (361)
                      .++|+++.|++++|.+++..+|++...+...+.+|++
T Consensus       156 ~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL~  192 (193)
T d1q3ea_         156 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD  192 (193)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred             cCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999988888774

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=5.6e-22  Score=160.75  Aligned_cols=128  Identities=15%  Similarity=0.278  Sum_probs=116.5

Q ss_pred             HHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----------eCcEEEEEeCCCC
Q psy9025         116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----------SGETVLATLTEGS  184 (361)
Q Consensus       116 ~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----------~~~~~~~~l~~Gd  184 (361)
                      .+|+++|+|++|+++++.+|+..++.+.|++|++|+++|+.++.+|||.+|.|+++           ++...+..+++|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            58999999999999999999999999999999999999999999999999999997           2336688999999


Q ss_pred             eechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q psy9025         185 VFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA  246 (361)
Q Consensus       185 ~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~  246 (361)
                      +||+.+++.   +.++.++++|.++|+++.|++++|.+++.++|++.........+++....
T Consensus        82 ~fGe~~~~~---~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~~~~~~~~~L~~l~  140 (147)
T d1cx4a2          82 YFGELALVT---NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALF  140 (147)
T ss_dssp             EESCHHHHH---TCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeehhhcC---CCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence            999999998   89999999999999999999999999999999987666666666665543

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=4.9e-22  Score=158.92  Aligned_cols=119  Identities=19%  Similarity=0.409  Sum_probs=111.9

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhh
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEIS  190 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~  190 (361)
                      +....+.|++.++|++|+++++..|+..++...|++|++|+++|++++.+|||.+|.|++...+..+..+++|++||+.+
T Consensus        15 ~~~l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~~~~~~~l~~G~~fGe~~   94 (136)
T d1ne6a1          15 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELA   94 (136)
T ss_dssp             HHHHHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHH
T ss_pred             HHHHHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeeccccccceeccccccccHH
Confidence            33446789999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             hhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHH
Q psy9025         191 LLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE  232 (361)
Q Consensus       191 ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~  232 (361)
                      ++.   +.++.++++|.++|.++.|++++|.+++..+|...+
T Consensus        95 ll~---~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r  133 (136)
T d1ne6a1          95 LIY---GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR  133 (136)
T ss_dssp             HHH---CCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHH
T ss_pred             HcC---CCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHH
Confidence            998   899999999999999999999999999999887644

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.87  E-value=1.2e-21  Score=156.07  Aligned_cols=123  Identities=32%  Similarity=0.485  Sum_probs=114.5

Q ss_pred             HHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhc
Q psy9025         114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLA  193 (361)
Q Consensus       114 ~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~  193 (361)
                      ..++|+++|+|+.++++++..|+..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.  ..+++|++||+.+++.
T Consensus         9 ~~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~~~--~~l~~G~~~G~~~~l~   86 (133)
T d1vp6a_           9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP--VELGPGAFFGEMALIS   86 (133)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSC--EEECTTCEECHHHHHH
T ss_pred             HHHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEeee--eeeccCcccccccccC
Confidence            45899999999999999999999999999999999999999999999999999999985443  3589999999999998


Q ss_pred             ccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Q psy9025         194 LAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQL  241 (361)
Q Consensus       194 ~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~  241 (361)
                         +.++.++++|.++|+++.|++++|.+++.++|.+...+.+.+.+|
T Consensus        87 ---~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R  131 (133)
T d1vp6a_          87 ---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (133)
T ss_dssp             ---CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ---CCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence               899999999999999999999999999999999998888777665

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.4e-21  Score=156.27  Aligned_cols=121  Identities=16%  Similarity=0.305  Sum_probs=111.4

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCee
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVF  186 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~f  186 (361)
                      .....+.|+++|+|++|+++++..++..++...|.+|++|+++|++++.+|||.+|.|+++    +.+..+..+++|++|
T Consensus        11 ~~~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~f   90 (136)
T d1cx4a1          11 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF   90 (136)
T ss_dssp             HHHHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEE
T ss_pred             HHHHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCcccc
Confidence            4445688999999999999999999999999999999999999999999999999999998    234777889999999


Q ss_pred             chhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHH
Q psy9025         187 GEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVL  234 (361)
Q Consensus       187 Ge~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~  234 (361)
                      |+.+++.   +.++.++++|.++|.+|.|++++|..++.++|...+.+
T Consensus        91 g~~~l~~---~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1cx4a1          91 GELALMY---NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM  135 (136)
T ss_dssp             CHHHHHH---CCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHhC---CCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHhc
Confidence            9999998   89999999999999999999999999999999876543

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.86  E-value=6.8e-21  Score=154.29  Aligned_cols=134  Identities=14%  Similarity=0.145  Sum_probs=120.6

Q ss_pred             HHHHHhccCcccccCCHHHHHHHHHhcc--eEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCe
Q psy9025         113 VHIQTLSKVQLFQDCDEALLRELVLKLR--PVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSV  185 (361)
Q Consensus       113 ~~~~~l~~~~~f~~l~~~~l~~l~~~l~--~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~  185 (361)
                      ...+.|+++|+|++++++.+..|+..++  .+.|.+|++|+++|++++.+|||.+|.|+++     |++.++..+++|++
T Consensus         3 ~~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~   82 (147)
T d1zyba2           3 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL   82 (147)
T ss_dssp             HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred             hHHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCE
Confidence            3467899999999999999999998865  5789999999999999999999999999998     46688999999999


Q ss_pred             echhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         186 FGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       186 fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      ||+.+++.  +..+++++++|.++|.++.||++.|.+++.++|.+...+.+.+.+|++....+
T Consensus        83 fGe~~~~~--~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~~ls~r~~~l~~r  143 (147)
T d1zyba2          83 IEPQSLFG--MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR  143 (147)
T ss_dssp             ECGGGGSS--SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccchhhc--ccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987  13445899999999999999999999999999999999999999998876644

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.6e-21  Score=153.89  Aligned_cols=114  Identities=26%  Similarity=0.391  Sum_probs=106.5

Q ss_pred             HHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCc-EEEEEeCCCCeechh
Q psy9025         116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGE-TVLATLTEGSVFGEI  189 (361)
Q Consensus       116 ~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~-~~~~~l~~Gd~fGe~  189 (361)
                      ++|+++|+|++|+++++..|+..+++..|.+|++|+++|++++.+|||.+|.|+++     +++ ..+..+++|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            68999999999999999999999999999999999999999999999999999987     222 458899999999999


Q ss_pred             hhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHH
Q psy9025         190 SLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE  232 (361)
Q Consensus       190 ~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~  232 (361)
                      +++.   +.+++++++|.++|+++.|++++|.+++..+|++..
T Consensus        82 ~~~~---~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~  121 (132)
T d1ne6a2          82 ALLM---NRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILK  121 (132)
T ss_dssp             HHHH---TSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHH
T ss_pred             eecC---CCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHH
Confidence            9998   889999999999999999999999999999998743

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-20  Score=154.44  Aligned_cols=131  Identities=24%  Similarity=0.388  Sum_probs=117.8

Q ss_pred             HHhhCCHhHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----
Q psy9025          97 ILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----  171 (361)
Q Consensus        97 ll~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----  171 (361)
                      +|+.-| .-|.+...+....+|+++++|+.++++.+.+++..++...|++|++|+++|+.++.+|||.+|.|.++     
T Consensus         6 ~L~k~p-~~Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~   84 (155)
T d1o7fa2           6 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS   84 (155)
T ss_dssp             HHTSCS-TTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSS
T ss_pred             HhcCCh-hhCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeeccc
Confidence            455544 44777778888899999999999999999999999999999999999999999999999999999987     


Q ss_pred             --eCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHH
Q psy9025         172 --SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQE  232 (361)
Q Consensus       172 --~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~  232 (361)
                        ++...+..+++|++||+ +++.   +.+++++++|.++|+++.|++++|.+++.++|++..
T Consensus        85 ~~~~~~~v~~l~~g~~fGe-~~l~---~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~~  143 (155)
T d1o7fa2          85 SHQDAVTICTLGIGTAFGE-SILD---NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA  143 (155)
T ss_dssp             CGGGCEEEEEECTTCEECG-GGGG---TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTT
T ss_pred             ccccccccccccccccchh-hhhc---CCCceEEEEECCCEEEEEEeHHHHHHHHHHCHHHHH
Confidence              23477899999999998 7887   889999999999999999999999999999998643

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.5e-20  Score=146.42  Aligned_cols=116  Identities=25%  Similarity=0.382  Sum_probs=105.9

Q ss_pred             HHHHHHHhccCcccccCCHHHHHHHHHhcceEE-eCCCCEEEeCCCCCCeEEEEEeeEEEEEe-CcEEEEEeCCCCeech
Q psy9025         111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVL-YLPGDYICRKGEVGKEMYIVKTGQVQVVS-GETVLATLTEGSVFGE  188 (361)
Q Consensus       111 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~l~~~~-~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~~~~~~l~~Gd~fGe  188 (361)
                      ++...+.|+++|+|++++++.+.+|+..+.... +++|++|+++|++++.+|||.+|.|++.. +......+++|++||+
T Consensus         5 ~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~~~~~~~~~~~G~~fGe   84 (124)
T d1o7fa3           5 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGK   84 (124)
T ss_dssp             HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECG
T ss_pred             HHHHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEeeeeecccccCCcchhh
Confidence            345678999999999999999999999998765 46899999999999999999999999984 4577888999999999


Q ss_pred             hhhhcccCCCceeeEEEecce-EEEEEEeHHHHHHHHHHCHH
Q psy9025         189 ISLLALAGTNRRTADVRSHGF-SNLFVLNKDDLNEAIEYYPN  229 (361)
Q Consensus       189 ~~ll~~~~~~~~~~~v~A~~~-~~~~~l~~~~f~~ll~~~p~  229 (361)
                      .+++.   +.+|.++++|.++ |.|+.|++++|..+++++|+
T Consensus        85 ~~ll~---~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          85 LALVN---DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             GGGTC---CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             hHhhC---CCceeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            99998   8999999999996 89999999999999999984

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.83  E-value=1e-19  Score=146.32  Aligned_cols=124  Identities=10%  Similarity=0.177  Sum_probs=115.8

Q ss_pred             cccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccC
Q psy9025         122 QLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAG  196 (361)
Q Consensus       122 ~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~  196 (361)
                      .+|+.|+++++..+...++++.|++|++|+.+|++++.+|||.+|.|+++     |++.++..+++|++||+.+++.   
T Consensus         7 elf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~---   83 (142)
T d2gaua2           7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA---   83 (142)
T ss_dssp             HHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH---
T ss_pred             HHHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhc---
Confidence            37999999999999999999999999999999999999999999999998     4568889999999999999998   


Q ss_pred             CCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         197 TNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       197 ~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +.++.++++|.++|.++.||+++|.+++.++|.+...+...+.++++....+
T Consensus        84 ~~~~~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~rl~~~~~~  135 (142)
T d2gaua2          84 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERR  135 (142)
T ss_dssp             TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999998888888888876655

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=7.8e-21  Score=152.02  Aligned_cols=113  Identities=26%  Similarity=0.399  Sum_probs=100.1

Q ss_pred             HhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe------CcEEEEEeCCCCeechhh
Q psy9025         117 TLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS------GETVLATLTEGSVFGEIS  190 (361)
Q Consensus       117 ~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~------~~~~~~~l~~Gd~fGe~~  190 (361)
                      .|+++|+|++|+++.+.+|+..+++..|.+|++|+++|++++.+|||.+|.|++..      ....+..+++|++|||.+
T Consensus         7 ~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~~   86 (137)
T d1wgpa_           7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDEL   86 (137)
T ss_dssp             SCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHH
T ss_pred             HHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcchh
Confidence            58999999999999999999999999999999999999999999999999999872      225578899999999999


Q ss_pred             hhccc------CCCceeeEEEecceEEEEEEeHHHHHHHHHHCHH
Q psy9025         191 LLALA------GTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN  229 (361)
Q Consensus       191 ll~~~------~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~  229 (361)
                      ++...      ...+++++|+|+++|++|.|++++|..++.+|+.
T Consensus        87 ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~r  131 (137)
T d1wgpa_          87 LTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRR  131 (137)
T ss_dssp             HHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCC
T ss_pred             HhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhcc
Confidence            87311      1246788999999999999999999999987764

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.9e-19  Score=138.78  Aligned_cols=119  Identities=18%  Similarity=0.310  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCCceee
Q psy9025         128 DEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTNRRTA  202 (361)
Q Consensus       128 ~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~  202 (361)
                      +++.++.++.+++.+.|++|++|+++|++.+.+|||.+|.|+++     |++.++..+.+|++||+.+++..  +.++.+
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~--~~~~~~   79 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE--GQERSA   79 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSS--SCBCCS
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcC--CccceE
Confidence            56789999999999999999999999999999999999999998     56688999999999999999872  577899


Q ss_pred             EEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         203 DVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       203 ~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      +++|.++|+++.||+++|.+++.++|.+...+.+.+.++++...++
T Consensus        80 ~~~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~~~~  125 (132)
T d1i5za2          80 WVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEK  125 (132)
T ss_dssp             EEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888888888876544

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=3.1e-18  Score=136.07  Aligned_cols=119  Identities=17%  Similarity=0.274  Sum_probs=105.5

Q ss_pred             HHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhccc-CCCceeeE
Q psy9025         130 ALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALA-GTNRRTAD  203 (361)
Q Consensus       130 ~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~-~~~~~~~~  203 (361)
                      +.++.|+..++.+.|++|++|+++|++++.+|+|.+|.|+++     |++.++..+++|++||+.+++... .+.+++++
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~   82 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW   82 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeE
Confidence            578899999999999999999999999999999999999998     456889999999999999988511 13578899


Q ss_pred             EEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         204 VRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       204 v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      ++|.++|+++.||++.|.+++.++|++...+.+.+.+|++...++
T Consensus        83 ~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~  127 (134)
T d2oz6a2          83 VRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRK  127 (134)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888888888876644

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.75  E-value=5.1e-18  Score=135.72  Aligned_cols=126  Identities=11%  Similarity=0.015  Sum_probs=112.0

Q ss_pred             HhccCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhh
Q psy9025         117 TLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISL  191 (361)
Q Consensus       117 ~l~~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~l  191 (361)
                      |+..+.++.-++.+.++.++..++.+.|++|++|+.+|++.+.+|||.+|.|+++     |++.++..+++|++||+.. 
T Consensus         2 ~~~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~-   80 (139)
T d3e5ua2           2 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLY-   80 (139)
T ss_dssp             CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCS-
T ss_pred             chhhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhh-
Confidence            3456677888899999999999999999999999999999999999999999987     4668899999999999843 


Q ss_pred             hcccCCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         192 LALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       192 l~~~~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                           ..++..+++|.++|+++.|+++.|..+++++|++...+.+.+.+++....+.
T Consensus        81 -----~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r~~~~~~~  132 (139)
T d3e5ua2          81 -----PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQ  132 (139)
T ss_dssp             -----CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----hhcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence                 3456789999999999999999999999999999999888888887765543

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=7.7e-18  Score=132.72  Aligned_cols=114  Identities=9%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             HHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-----eCcEEEEEeCCCCeechhhhhcccCCC-ceeeEEE
Q psy9025         132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVFGEISLLALAGTN-RRTADVR  205 (361)
Q Consensus       132 l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-----~~~~~~~~l~~Gd~fGe~~ll~~~~~~-~~~~~v~  205 (361)
                      ++.|+.+.+...|++|++|+++|++++.+|||.+|.++++     |++..+..+++|++||+.+++.   +. ++.++++
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---~~~~~~~~~~   79 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS---SEPRFPVNVV   79 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS---SSCBCSSEEE
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhc---cCCCccEEEE
Confidence            5678889999999999999999999999999999999987     4568899999999999999997   45 4578999


Q ss_pred             ecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         206 SHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       206 A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                      |.++|+++.||+++|.+++.++|.+...+.+.+..+++...++
T Consensus        80 a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  122 (129)
T d1o5la1          80 AGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEK  122 (129)
T ss_dssp             ESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccEEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888888877765544

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.74  E-value=2.7e-18  Score=136.15  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=109.2

Q ss_pred             cCcccccCCHHHHHHHHHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE----eCcEEEEEeCCCCeechhhhhccc
Q psy9025         120 KVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV----SGETVLATLTEGSVFGEISLLALA  195 (361)
Q Consensus       120 ~~~~f~~l~~~~l~~l~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~----~~~~~~~~l~~Gd~fGe~~ll~~~  195 (361)
                      +.++|+.|++++++.+...++.+.|++|++|+++|+.++.+|+|.+|.++++    +++.++..+++|++||+.      
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~------   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH------   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC------
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc------
Confidence            5689999999999999999999999999999999999999999999999987    455789999999999863      


Q ss_pred             CCCceeeEEEecceEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhh
Q psy9025         196 GTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAAR  248 (361)
Q Consensus       196 ~~~~~~~~v~A~~~~~~~~l~~~~f~~ll~~~p~~~~~~~~~~~~~l~~~~~~  248 (361)
                          ++++++|.++|+++.|+++.|.+++.++|.+...+.+.+.+|++.....
T Consensus        77 ----~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l~~rl~~~~~~  125 (132)
T d1ft9a2          77 ----SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRT  125 (132)
T ss_dssp             ----SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2578999999999999999999999999999999999999998876644

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=8.2e-05  Score=66.44  Aligned_cols=79  Identities=6%  Similarity=0.088  Sum_probs=59.6

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCC--
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNS--  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~--  341 (361)
                      ..++|.+ +..+.+.....++  ..|..++..+++|    ++..+.+..++|+.++.|        +-++..  ++|.  
T Consensus        32 ~~AiK~i~k~~~~~~~~~~~~--~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~~~--~~e~~~  107 (337)
T d1o6la_          32 YYAMKILRKEVIIAKDEVAHT--VTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV--FTEERA  107 (337)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSC--CCHHHH
T ss_pred             EEEEEEEchhhccCHHHHHHH--HHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcccC--CcHHHH
Confidence            4456666 5555555556666  6789999998888    566899999999999887        222233  6766  


Q ss_pred             --ccceeehhhhhhhhcccc
Q psy9025         342 --FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 --~~a~v~~a~~~lH~~~i~  359 (361)
                        +.++++.|++|||++||+
T Consensus       108 ~~~~~qil~al~ylH~~~ii  127 (337)
T d1o6la_         108 RFYGAEIVSALEYLHSRDVV  127 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHhhhhhhhhhcCcc
Confidence              389999999999999997

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.00032  Score=60.10  Aligned_cols=78  Identities=6%  Similarity=-0.000  Sum_probs=55.3

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCCc--
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNSF--  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~~--  342 (361)
                      .++|.+ +..+.+......+  ..|..++..+++|    ++..+.++..+|+.||.|        +....+  ++|.-  
T Consensus        34 vAiK~i~~~~~~~~~~~~~~--~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~~~--l~e~~~~  109 (263)
T d2j4za1          34 LALKVLFKAQLEKAGVEHQL--RREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTA  109 (263)
T ss_dssp             EEEEEEEHHHHHHTTCHHHH--HHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSS--CCHHHHH
T ss_pred             EEEEEEchHHccChHHHHHH--HHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhcCC--CCHHHHH
Confidence            344544 3344444444455  5678888888888    556888889999999987        223234  66663  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        ..+++.|++|||++||+
T Consensus       110 ~i~~qi~~al~~lH~~~iv  128 (263)
T d2j4za1         110 TYITELANALSYCHSKRVI  128 (263)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHCCee
Confidence              89999999999999997

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.00054  Score=59.46  Aligned_cols=78  Identities=8%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCCc--
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNSF--  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~~--  342 (361)
                      .++|.+ +..+.+......+  ..|..++..++++    ++..+.+...+|+.||.|        +....+  ++|..  
T Consensus        36 vAvK~i~~~~~~~~~~~~~~--~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~~--l~e~~~~  111 (288)
T d1uu3a_          36 YAIKILEKRHIIKENKVPYV--TRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGS--FDETCTR  111 (288)
T ss_dssp             EEEEEEEHHHHHHTTCHHHH--HHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSS--CCHHHHH
T ss_pred             EEEEEEehHHccCHHHHHHH--HHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhccCC--CCHHHHH
Confidence            344544 3444444444445  6788888888888    556888888999999887        122233  66663  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        ++.++.|++|||++||+
T Consensus       112 ~~~~qi~~al~ylH~~~ii  130 (288)
T d1uu3a_         112 FYTAEIVSALEYLHGKGII  130 (288)
T ss_dssp             HHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHhhccccEE
Confidence              88999999999999997

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.00078  Score=59.22  Aligned_cols=79  Identities=9%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             CcchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCC--
Q psy9025         277 PKLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNS--  341 (361)
Q Consensus       277 ~~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~--  341 (361)
                      ..++|.+ +..+.+......+  ..|..++..+++|    ++..+.+..++|+.|+.|        +..+..  +++.  
T Consensus        31 ~vAvK~i~~~~~~~~~~~~~~--~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~~~--~~~~~~  106 (316)
T d1fota_          31 YYAMKVLKKEIVVRLKQVEHT--NDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQR--FPNPVA  106 (316)
T ss_dssp             EEEEEEEEHHHHHHTTCHHHH--HHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTSS--CCHHHH
T ss_pred             EEEEEEEchHHccCHHHHHHH--HHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCcccccccccccc--ccccHH
Confidence            3445555 3333444445555  6788899998888    456888888999999887        222122  4444  


Q ss_pred             --ccceeehhhhhhhhcccc
Q psy9025         342 --FECQVTVHREDIHESHIT  359 (361)
Q Consensus       342 --~~a~v~~a~~~lH~~~i~  359 (361)
                        +..+++.|++|||++||+
T Consensus       107 ~~~~~qi~~al~~lH~~~ii  126 (316)
T d1fota_         107 KFYAAEVCLALEYLHSKDII  126 (316)
T ss_dssp             HHHHHHHHHHHHHHHTTTEE
T ss_pred             HHHHHHHHHhhhhhccCcEE
Confidence              378999999999999997

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.14  E-value=0.38  Score=34.21  Aligned_cols=68  Identities=12%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         139 LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      +....+.+|+.+-..-.+.+.+++|++|.+.+.-++.. ..+.+||++=..        ......++|.+++.++.+
T Consensus        39 i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip--------~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          39 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET-YRVAEGQTIVMP--------AGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTCEEEEC--------TTSCEEEEESSCEEEEEE
T ss_pred             EEEEEECCCCCcceEECCCCEEEEEEeCEEEEEEccEE-EEecCCEEEEcC--------CCCeEEeEECCCcEEEEE
Confidence            44567899998877666778999999999999865543 578999987432        233456778888877665

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.85  E-value=0.0012  Score=58.89  Aligned_cols=78  Identities=12%  Similarity=0.044  Sum_probs=54.1

Q ss_pred             cchhHH-HhhcccCcccchhhhccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCCc--
Q psy9025         278 KLLPIV-MQVVPQNSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNSF--  342 (361)
Q Consensus       278 ~~l~~~-~~~i~~~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~~--  342 (361)
                      .++|.+ +..+.+......+  ..|..++..++++    ++..+.+...+|+.++.|        +.+...  ++|..  
T Consensus        69 ~AvK~i~~~~~~~~~~~~~~--~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~~~--l~e~~~~  144 (350)
T d1rdqe_          69 YAMKILDKQKVVKLKQIEHT--LNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGR--FSEPHAR  144 (350)
T ss_dssp             EEEEEEEHHHHHHTTCHHHH--HHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCC--CCHHHHH
T ss_pred             EEEEEEchHHccCHHHHHHH--HHHHHHHHHcCCCcEeecccccccccccccccccccccchhhhHhhcCC--CCHHHHH
Confidence            344544 3333444444445  6788899898888    455778888888887766        333334  66663  


Q ss_pred             --cceeehhhhhhhhcccc
Q psy9025         343 --ECQVTVHREDIHESHIT  359 (361)
Q Consensus       343 --~a~v~~a~~~lH~~~i~  359 (361)
                        ..+++.|+.|||++||+
T Consensus       145 ~i~~qi~~aL~yLH~~~ii  163 (350)
T d1rdqe_         145 FYAAQIVLTFEYLHSLDLI  163 (350)
T ss_dssp             HHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHhCCEe
Confidence              89999999999999997

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.49  E-value=0.00092  Score=58.56  Aligned_cols=59  Identities=5%  Similarity=-0.053  Sum_probs=46.0

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+|..+++|    ++..+.+...+|+.||.|        ...+.+  ++|.-    ...++.|++|||++||+
T Consensus        63 ~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~--l~e~~~~~i~~qi~~aL~yLH~~~ii  137 (309)
T d1u5ra_          63 IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP--LQEVEIAAVTHGALQGLAYLHSHNMI  137 (309)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            4677888888888    455777888899999887        233233  67663    89999999999999997

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.0019  Score=56.09  Aligned_cols=61  Identities=11%  Similarity=-0.029  Sum_probs=46.6

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+++.++++    ++..+.+...+|+.++.|      .+ .....+++|.-    ..+++.|++|||++||+
T Consensus        49 ~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~Ii  124 (298)
T d1gz8a_          49 IREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVL  124 (298)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEE
Confidence            5688888888888    556888888889888877      12 21223466663    89999999999999997

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.90  E-value=0.0045  Score=53.90  Aligned_cols=59  Identities=8%  Similarity=-0.081  Sum_probs=46.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..+++|    ++..+.+..++|+.||.|       ++ ++.+  ++|.-    ..+++.|++|||++||+
T Consensus        55 ~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~~~--l~e~~~~~~~~qi~~al~ylH~~~ii  129 (307)
T d1a06a_          55 ENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF--YTERDASRLIFQVLDAVKYLHDLGIV  129 (307)
T ss_dssp             CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSC--CCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhcccC--CCHHHHHHHHHHHHHHHHhhhhceee
Confidence            5677888888887    556888899999999988       23 3223  66663    99999999999999997

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.0034  Score=54.31  Aligned_cols=59  Identities=7%  Similarity=-0.054  Sum_probs=46.7

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+++.+++|    ++..+.+..++|+.||.|       +..+.+  ++|..    ...++.|++|||++||+
T Consensus        65 ~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~--l~~~~~~~i~~qi~~aL~yLH~~~ii  138 (293)
T d1yhwa1          65 INEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETC--MDEGQIAAVCRECLQALEFLHSNQVI  138 (293)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhccC--CCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            5677888888888    455788888999999987       344334  67663    88999999999999997

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.0018  Score=56.85  Aligned_cols=59  Identities=7%  Similarity=-0.074  Sum_probs=43.1

Q ss_pred             ccCcccccC-cccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKR-PHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~-~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++.. +++|    ++..+.+..++|+.||.|       ++ .+..  ++|.-    +++++.|++|||++||+
T Consensus        50 ~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~~~--~~e~~~~~~~~qi~~al~ylH~~~ii  125 (320)
T d1xjda_          50 MVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHK--FDLSRATFYAAEIILGLQFLHSKGIV  125 (320)
T ss_dssp             HHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            345555543 7777    556888899999999877       22 2233  66653    89999999999999997

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=90.58  E-value=1.7  Score=29.63  Aligned_cols=91  Identities=11%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             hcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEe----CcEEEEEeCCCCeechhhhhcccCCCceeeEEEecc-eEEE
Q psy9025         138 KLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS----GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG-FSNL  212 (361)
Q Consensus       138 ~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~----~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~-~~~~  212 (361)
                      -+++..|.+.+.|+.|=||.+...|+.+|..+++.    +...--..-.|.++-...++... ...--.+...++ ....
T Consensus        10 gikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnlqyykgafiimsg~idt~-~~lgyynlevise~ata   88 (131)
T d2bgca2          10 GIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTE-TSVGYYNLEVISEQATA   88 (131)
T ss_dssp             TCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEEESSEEEESBCTTTC-CBSCCCEEEECSSEEEE
T ss_pred             CCChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEeeeeccccEEEEecccccC-Cccceeeeeeehhccee
Confidence            37899999999999999999999999999999982    33333445677776555555410 122233444443 4788


Q ss_pred             EEEeHHHHHHHHHHCHH
Q psy9025         213 FVLNKDDLNEAIEYYPN  229 (361)
Q Consensus       213 ~~l~~~~f~~ll~~~p~  229 (361)
                      |+|...++..++..+-.
T Consensus        89 yvikisdlk~lvs~dl~  105 (131)
T d2bgca2          89 YVIKINELKELLSKNLT  105 (131)
T ss_dssp             EEEEHHHHHHHHHHCHH
T ss_pred             eeEEHHHHHHHHHHhHH
Confidence            99999999999987754

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.0052  Score=53.83  Aligned_cols=61  Identities=13%  Similarity=-0.022  Sum_probs=46.7

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+++.++++    ++..+.+...+|+.||.|       .+......++|..    ..+++.|++|||++||+
T Consensus        49 ~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~ii  124 (321)
T d1tkia_          49 KKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIG  124 (321)
T ss_dssp             HHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            5677888888887    556888899999999988       2332221266663    88999999999999997

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.0051  Score=52.48  Aligned_cols=60  Identities=12%  Similarity=-0.066  Sum_probs=44.9

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..+++|    ++..+.+...+|+.||.|       .+. ....++|.-    ..+++.|++|||++||+
T Consensus        51 ~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~-~~~~l~e~~~~~i~~qi~~al~ylH~~~Ii  125 (271)
T d1nvra_          51 KKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-PDIGMPEPDAQRFFHQLMAGVVYLHGIGIT  125 (271)
T ss_dssp             HHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSB-TTTBCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4566777777777    556888888899999888       232 112266652    89999999999999997

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=89.98  E-value=0.0063  Score=52.12  Aligned_cols=61  Identities=11%  Similarity=-0.001  Sum_probs=45.1

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..+|..++++    ++..+.+...+|+.++.|      .+......++|..    +.+++.|++|||+.||+
T Consensus        48 ~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~Iv  122 (286)
T d1ob3a_          48 IREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVL  122 (286)
T ss_dssp             HHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEE
Confidence            5678888888887    556888888888777766      2222223366663    99999999999999997

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.0056  Score=52.71  Aligned_cols=61  Identities=7%  Similarity=-0.103  Sum_probs=45.4

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..+++|    ++..+.+...+|+.||.|       ++.+....++|..    ..+++.|++|||++||+
T Consensus        57 ~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~iv  132 (288)
T d2jfla1          57 MVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKII  132 (288)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
Confidence            4577778778887    455778888889999887       2222222377663    88999999999999997

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.017  Score=49.61  Aligned_cols=61  Identities=8%  Similarity=-0.058  Sum_probs=44.8

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..++++    ++..+.++.++|+.|+.|      .+......++|.-    ..+++.|++|||++||+
T Consensus        48 ~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~ii  122 (299)
T d1ua2a_          48 LREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWIL  122 (299)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcccee
Confidence            4566677777776    566888888999999887      1221222366663    88999999999999997

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.75  E-value=0.35  Score=34.29  Aligned_cols=71  Identities=10%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             cceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         139 LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      +....++||+.+-..--+.+.+++|++|...+.-++.....+++||++-..+      +.+........++..++++
T Consensus        28 v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v~~~e~~~v~~Gd~i~ip~------~~~H~~~n~~~e~l~~l~v   98 (108)
T d2b8ma1          28 INHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPF------NVKMLIQNINSDILEFFVV   98 (108)
T ss_dssp             EEEEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEECT------TCEEEEECCSSSEEEEEEE
T ss_pred             EEEEEECCCCcChhhcccccEEEEEEeeeEEEEEecccEEEeecceEeeccC------CceEEEEcCCCCcEEEEEE
Confidence            4556788888876555567889999999999984433223578998774322      3444333333344555555

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=88.36  E-value=0.015  Score=51.43  Aligned_cols=61  Identities=11%  Similarity=0.008  Sum_probs=44.7

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh----h---hccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR----L---LHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~----~---~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..++++    ++..+.+...+|+.||.|    +   +......++|.-    ...++.|+.|||++||+
T Consensus        74 ~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~ii  149 (352)
T d1koba_          74 KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIV  149 (352)
T ss_dssp             HHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            4566777777777    556788888899999988    2   221222266663    88999999999999997

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=88.16  E-value=0.011  Score=52.30  Aligned_cols=61  Identities=8%  Similarity=-0.086  Sum_probs=45.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..++++    ++..+.+...+|+.|+.|       .+.+....++|.-    ..+++.|++|||++||+
T Consensus        71 ~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~ii  146 (350)
T d1koaa2          71 RKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYV  146 (350)
T ss_dssp             HHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence            4577777777777    456788888899999887       2332222266663    89999999999999997

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.23  E-value=0.011  Score=50.73  Aligned_cols=59  Identities=12%  Similarity=-0.057  Sum_probs=44.5

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh--------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.++..++++    ++..+.+...+|+.||.|        +.++.+  +++..    ..+++.|+.|||++||+
T Consensus        61 ~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~--l~~~~~~~~~~qi~~al~yLH~~~iv  135 (293)
T d1jksa_          61 EREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKES--LTEEEATEFLKQILNGVYYLHSLQIA  135 (293)
T ss_dssp             HHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccccc--cchhHHHHHHHHHHHHHHhhhhccee
Confidence            4566777777777    455788888899998887        223233  66663    88999999999999996

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.81  E-value=0.022  Score=48.78  Aligned_cols=97  Identities=7%  Similarity=0.010  Sum_probs=59.0

Q ss_pred             ccccccccCCCCCCCCCcchh------HH-Hhhccc-CcccchhhhccCcccccCcccc----cccccccccccCchhhh
Q psy9025         261 ASSVLLDRKGEEPKQAPKLLP------IV-MQVVPQ-NSMASKLLRCGSKSLNKRPHRR----VNRSASADTYFHPKQQR  328 (361)
Q Consensus       261 ~~l~~~~~~~~~~~~~~~~l~------~~-~~~i~~-~~~~~~vl~~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~  328 (361)
                      .++.+....|.+..+......      .+ .+.+.. ....+.+  ..|-.+|..++++    ++..+.+...+|+.++.
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~--~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~   94 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEF--LKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   94 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHH--HHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHH--HHHHHHHHhCCCCCEecCCccEeeCCeeEEEeec
Confidence            455566667766554432110      12 222322 2222334  5677888888888    45577778888888887


Q ss_pred             h-------hhc-cCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         329 R-------LLH-QTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       329 ~-------~~~-~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      |       .+. .....+++..    +..++.|++|||++||+
T Consensus        95 ~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~ii  137 (287)
T d1opja_          95 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFI  137 (287)
T ss_dssp             CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            7       232 2222355553    77999999999999997

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.67  E-value=0.011  Score=50.50  Aligned_cols=59  Identities=8%  Similarity=0.054  Sum_probs=43.3

Q ss_pred             ccCcccccCcc-cc----cccccccccccCchhhhh--------hhccCCCCCCCCc----cceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPH-RR----VNRSASADTYFHPKQQRR--------LLHQTPTGHNNSF----ECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~-~~----~~~t~~d~~~~~~l~~~~--------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i~  359 (361)
                      ..|..++..+. ++    ++..+.++..+|+.|+-|        +-.+.+  ++|..    ++.++.|++|||++||+
T Consensus        57 ~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~~--l~e~~~~~~~~qi~~al~~lH~~~iv  132 (277)
T d1phka_          57 LKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVT--LSEKETRKIMRALLEVICALHKLNIV  132 (277)
T ss_dssp             HHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            34666666654 44    455888899999998877        223233  67663    89999999999999987

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=85.73  E-value=1.9  Score=29.03  Aligned_cols=58  Identities=17%  Similarity=0.119  Sum_probs=42.4

Q ss_pred             CCHHHHHHH-HHhcceEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEeCcEEEEEeCCCCee
Q psy9025         127 CDEALLREL-VLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVF  186 (361)
Q Consensus       127 l~~~~l~~l-~~~l~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~f  186 (361)
                      .+++.+.++ +...-.-...||..=..  -+.+.+..|++|.+.+...+.....+++||.|
T Consensus         7 ~~~~~l~~lGv~~~gvW~~~pg~f~~~--y~~~E~~~ileG~v~i~~~~G~~~~~~aGD~~   65 (88)
T d1o5ua_           7 PTPEKLKELSVEKWPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLV   65 (88)
T ss_dssp             CCHHHHHHHTGGGSCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEE
T ss_pred             CCHHHHHhcCCcccceEeecCcEEEEE--cCccEEEEEEEeEEEEEcCCCCEEEEeCCCEE
Confidence            466767666 45556677788876444  45689999999999998644444569999987

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=85.70  E-value=2.4  Score=29.00  Aligned_cols=70  Identities=21%  Similarity=0.157  Sum_probs=44.9

Q ss_pred             cceEEeCCCCEEEeCCCC-CCeEEEEEeeEEEEEeCcEEEEEeCCCCeechhhhhcccCCCceeeEEEecceEEEEEE
Q psy9025         139 LRPVLYLPGDYICRKGEV-GKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVL  215 (361)
Q Consensus       139 l~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~Gd~fGe~~ll~~~~~~~~~~~v~A~~~~~~~~l  215 (361)
                      +....+.||+.+-..--. .+.+++|++|.+.+.-++.. ..+.+||.+=..+      +.+........+++.++.+
T Consensus        30 ~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~~p~------~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEE-ALLAPGMAAFAPA------GAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEE-EEECTTCEEEECT------TSCEEEECCSSSCEEEEEE
T ss_pred             EEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeeeE-EEecceEEEEeCC------CCEEEeEECCCCCEEEEEE
Confidence            456678899887654433 46899999999999865554 5789999772211      3444333333455666554

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.51  E-value=0.043  Score=47.08  Aligned_cols=61  Identities=7%  Similarity=-0.037  Sum_probs=44.4

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hhccCCCCCCCC----ccceeehhhhhhhhcccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LLHQTPTGHNNS----FECQVTVHREDIHESHIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~~~~~~~~~~~----~~a~v~~a~~~lH~~~i~  359 (361)
                      ..|-.+|..+++|    ++..+.+...+|+.||.|       ++......+++.    ++..++.|+.|||++||+
T Consensus        75 ~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~ii  150 (299)
T d1jpaa_          75 LSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYV  150 (299)
T ss_dssp             HHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            5677888888888    455777777888888877       233221125554    288999999999999997

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.043  Score=47.60  Aligned_cols=59  Identities=8%  Similarity=-0.040  Sum_probs=44.4

Q ss_pred             ccCcccccCcccc----cccccccccccCchhhhh-------hh-ccCCCCCCCCc----cceeehhhhhhhhc-ccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASADTYFHPKQQRR-------LL-HQTPTGHNNSF----ECQVTVHREDIHES-HIT  359 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~~~~~~l~~~~-------~~-~~~~~~~~~~~----~a~v~~a~~~lH~~-~i~  359 (361)
                      ..|-.++..+++|    ++..|.+...+|+.||.|       ++ +...  ++|..    ..+++.|+.|||++ ||+
T Consensus        52 ~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~~~--l~~~~~~~~~~qil~aL~yLH~~~~Ii  127 (322)
T d1s9ja_          52 IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR--IPEQILGKVSIAVIKGLTYLREKHKIM  127 (322)
T ss_dssp             HHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhcCC--CCHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            5678888888888    456788888888888876       23 3233  66653    78999999999986 897

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.013  Score=51.61  Aligned_cols=60  Identities=17%  Similarity=0.041  Sum_probs=39.8

Q ss_pred             ccCcccccCcccc----cccccccc------cccCchhhhh------hhccCCCCCCCCc----cceeehhhhhhhhccc
Q psy9025         299 CGSKSLNKRPHRR----VNRSASAD------TYFHPKQQRR------LLHQTPTGHNNSF----ECQVTVHREDIHESHI  358 (361)
Q Consensus       299 ~~ek~i~~~~~~~----~~~t~~d~------~~~~~l~~~~------~~~~~~~~~~~~~----~a~v~~a~~~lH~~~i  358 (361)
                      ..|-.+|+.++++    ++..|.+.      .++|+.|+.|      +....+  +++..    ...++.|++|||++||
T Consensus        65 ~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~--l~~~~~~~~~~qi~~aL~~LH~~~I  142 (346)
T d1cm8a_          65 YRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEK--LGEDRIQFLVYQMLKGLRYIHAAGI  142 (346)
T ss_dssp             HHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecccccHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4567777777776    23333333      3456666666      333334  66663    8999999999999999


Q ss_pred             cC
Q psy9025         359 TS  360 (361)
Q Consensus       359 ~~  360 (361)
                      +-
T Consensus       143 iH  144 (346)
T d1cm8a_         143 IH  144 (346)
T ss_dssp             EC
T ss_pred             cc
Confidence            73