Psyllid ID: psy9090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAANGI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccEEEccEEEEccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccEEEEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEcccccEEEccccccEHHHHHHHcccccccccccccHHHHHHHcccccccccHccHHHHHHEHHHHccccccHHccccHHHHEEccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHcccEEEEEcccEEEEEEccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHccEEEEEccEEEEEccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHccccccEccccccccEEEEEEEccccEEEccEHHHHHHHHcHEEEEccccccccHHHHHHHccccHHHHHHHHcccccccccEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MSEQHIAFILKEIITGMVflhenhvihrdlrgsnvlltkdgevkivdfglsretantfdkkktflgspswmapeimrcghkevdgydnriDVWALGITAielgdgkppfedmhptrALFQivrnpppglyrasnwsQHYVDFIAECleknpehrpymsellehpfitslpendlhlstvncqykdqelqtmHVEDLAALETISEDNIVQELEErhnsknhysfVGDVLLFinpnthlnlygtkyhfkykfksrsdnephiyAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIgnagtpinqnstRHVLYMQVTfgssgklsGAIFWLYQLEKwrvtgnrdplqanFHIFYYFYDAMEAAGELDkyflspgrkyrylradvtddklpkgpretpdtnVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEvefessaentaelanpevaangi
Flexible Loop (DISEMBL)
MSEQHIAFILKEIITGMVFLHENHVIHRdlrgsnvlltkdGEVKivdfglsretantfdkkktflgspswmapeIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRadvtddklpkgpretpdtnvaKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSaentaelanpevaangi
Low Complexity Region (SEG)
MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSlkhllkhlIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAANGI
Disordered region (IsUnstruct)
****HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELE***NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADV***************NVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEF********************
Disordered Region (DISOPRED)
MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP********NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQT***************************KNHYSFVGDVLLFINPNTH***********************IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADV**************TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA***
Disordered Region (DISEMBL)
MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAANGI
Disordered Region (DISPRO)
MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESS*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAANGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
P10676	1501	Neither inactivation nor	no	N/A	0.987	0.321	0.480	1e-133
Q8NEV4	1616	Myosin-IIIa OS=Homo sapie	yes	N/A	0.944	0.285	0.387	7e-93
Q8WXR4	1341	Myosin-IIIb OS=Homo sapie	no	N/A	0.989	0.360	0.373	6e-88
Q1EG27	1305	Myosin-IIIb OS=Mus muscul	no	N/A	0.989	0.370	0.359	4e-86
Q8K3H5	1613	Myosin-IIIa OS=Mus muscul	yes	N/A	0.948	0.287	0.384	7e-86
Q23356	1096	Serine/threonine-protein	yes	N/A	0.348	0.155	0.494	4e-47
P83510	1323	Traf2 and NCK-interacting	no	N/A	0.368	0.136	0.470	2e-46
Q9UKE5	1360	TRAF2 and NCK-interacting	no	N/A	0.368	0.132	0.470	3e-46
Q8N4C8	1332	Misshapen-like kinase 1 O	no	N/A	0.368	0.135	0.481	5e-46
Q9JM52	1308	Misshapen-like kinase 1 O	no	N/A	0.368	0.137	0.481	6e-46

>sp|P10676|NINAC_DROME Neither inactivation nor afterpotential protein C OS=Drosophila melanogaster GN=ninaC PE=1 SV=2

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/512 (48%), Positives = 330/512 (64%), Gaps = 30/512 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HIA+I++E     + L+ NHV+HRD+RG N+LLTK+G VK+ DFGLSR+  +T  K
Sbjct: 117 MREEHIAYIIRETCRAAIELNRNHVLHRDIRGDNILLTKNGRVKLCDFGLSRQVDSTLGK 176

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSP WMAPE++            R DVWALGIT IEL DGKPPF DMHPTRA+FQ
Sbjct: 177 RGTCIGSPCWMAPEVVSAMESREPDITVRADVWALGITTIELADGKPPFADMHPTRAMFQ 236

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND------- 173
           I+RNPPP L R +NWSQ   DFI+E LEKN E+RP M E++EHPF+T L EN+       
Sbjct: 237 IIRNPPPTLMRPTNWSQQINDFISESLEKNAENRPMMVEMVEHPFLTELIENEDEMRSDI 296

Query: 174 ---LHLST-VNCQYKDQEL--------------QTMHVEDLAALETISEDNIVQELEERH 215
              L LS  V   YK+ EL              + M+ EDLAALE   ++NI++ L  R 
Sbjct: 297 AEMLELSRDVKTLYKEPELFVDRGYVKRFDEKPEKMYPEDLAALENPVDENIIESLRHRI 356

Query: 216 NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHE 275
                YSF+GD+LL +N N     +  ++H KY+FKSRS+N+PHI++VAD AYQDM+HH+
Sbjct: 357 LMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQPHIFSVADIAYQDMLHHK 416

Query: 276 EAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQN 335
           E QHIVL+GE+ +GK+T+ + L+KHL +LG G      ++E  +  I  + NAGTP+N +
Sbjct: 417 EPQHIVLSGESYSGKSTNARLLIKHLCYLGDGNRGATGRVESSIKAILMLVNAGTPVNND 476

Query: 336 STRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGEL 395
           STR VL   +TFG +GK+SGA+F +Y LEK RV    D  Q NFHIFYYFYD +    +L
Sbjct: 477 STRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRV-ATTDGTQHNFHIFYYFYDFINQQNQL 535

Query: 396 DKYFLSPGRKYRYLRA--DVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIF 453
            +Y L   R YRYLR   +V   KL K  R+ P+ NV +++E    L DI+F+  Q+E  
Sbjct: 536 KEYNLKADRNYRYLRVPPEVPPSKL-KYRRDDPEGNVERYREFENILRDIDFNHKQLETV 594

Query: 454 SNVLAAILLIGEVEFESSAENTAELANPEVAA 485
             VLAAIL IG + F  + +  AE+ N ++ +
Sbjct: 595 RKVLAAILNIGNIRFRQNGK-YAEVENTDIVS 625

Required for photoreceptor cell function. The ninaC proteins combines putative serine/threonine-protein kinase and myosin activities.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8NEV4|MYO3A_HUMAN Myosin-IIIa OS=Homo sapiens GN=MYO3A PE=2 SV=2

 Score =  341 bits (875), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 196/506 (38%), Positives = 288/506 (56%), Gaps = 45/506 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           MSE  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct: 122 MSEPLIAYILHEALMGLQHLHNNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRHR 181

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct: 182 RNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFK 241

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNPPP L +   WS  + DFI++CL K+ E RP +SELL+H FIT +   D+ L    
Sbjct: 242 IPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSELLQHKFITQIEGKDVMLQKQL 301

Query: 181 CQY-------------KDQELQTMH-------------VEDLAALETISEDNIVQELEER 214
            ++             + + + T               V+DLA LE + E+ + ++LE+ 
Sbjct: 302 TEFIGIHQCMGGTEKARRERIHTKKGNFNRPLISNLKDVDDLATLEILDENTVSEQLEKC 361

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
           ++    Y +VGD+L+ +NP   L LY TK+   Y    R+ + PHI+A+AD  YQ M+ +
Sbjct: 362 YSRDQIYVYVGDILIALNPFQSLGLYSTKHSKLYIGSKRTASPPHIFAMADLGYQSMITY 421

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK-VGEKIEKCVNVIHAIGNAGTPIN 333
              Q IV++GE+ AGKT +   L++ L  LG+   + + EKI +  N++ A GNA T IN
Sbjct: 422 NSDQCIVISGESGAGKTENAHLLVQQLTVLGKANNRTLQEKILQVNNLVEAFGNACTIIN 481

Query: 334 QNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAG 393
            NS+R   Y+++ F SSG + GA    Y LEK RV  ++   + NFHIFYY Y  +    
Sbjct: 482 DNSSRFGKYLEMKFTSSGAVVGAQISEYLLEKSRVI-HQAIGEKNFHIFYYIYAGLAEKK 540

Query: 394 ELDKYFLSPGRKYRYLR-------ADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFD 446
           +L  Y L   +  RYL+        D+ ++   K          ++++ I Q    I F 
Sbjct: 541 KLAHYKLPENKPPRYLQNDHLRTVQDIMNNSFYK----------SQYELIEQCFKVIGFT 590

Query: 447 DIQMEIFSNVLAAILLIGEVEFESSA 472
             Q+    ++LAAIL +G +EF S A
Sbjct: 591 MEQLGSIYSILAAILNVGNIEFSSVA 616

Probable actin-based motor with a protein kinase activity. Probably plays a role in vision and hearing.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8WXR4|MYO3B_HUMAN Myosin-IIIb OS=Homo sapiens GN=MYO3B PE=2 SV=4

 Score =  325 bits (832), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 193/517 (37%), Positives = 291/517 (56%), Gaps = 34/517 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I++IL   + G+  LH N +IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct: 128 LDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR 187

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++ C  +    YD R DVW+LGITAIELGDG PP  DMHP + LF+
Sbjct: 188 RNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFK 247

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNPPP L     W + +  FI++CL K+ E RP ++ LL+HPFI  +    L L    
Sbjct: 248 IPRNPPPTLLHPEKWCEEFNHFISQCLIKDFERRPSVTHLLDHPFIKGVHGKVLFLQKQL 307

Query: 181 CQ-YKDQELQT---------------MHVE---------DLAALETISEDNIVQELEERH 215
            +  +DQ+ Q                 HVE         DL  LE + ED I+ +L++R+
Sbjct: 308 AKVLQDQKHQNPVAKTRHERMHTRRPYHVEDAEKYCLEDDLVNLEVLDEDTIIHQLQKRY 367

Query: 216 NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHE 275
                Y++VGD+L+ +NP  +L++Y  ++   Y    R+ N PHI+A AD+AYQ M+   
Sbjct: 368 ADLLIYTYVGDILIALNPFQNLSIYSPQFSRLYHGVKRASNPPHIFASADAAYQCMVTLS 427

Query: 276 EAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK-VGEKIEKCVNVIHAIGNAGTPINQ 334
           + Q IV++GE+ +GKT S   +++HL FLG+   + + EKI +  +++ A GN+ T IN 
Sbjct: 428 KDQCIVISGESGSGKTESAHLIVQHLTFLGKANNQTLREKILQVNSLVEAFGNSCTAIND 487

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NS+R   Y+++ F  +G + GA    Y LEK RV   +   + NFHIFYY Y  +    +
Sbjct: 488 NSSRFGKYLEMMFTPTGVVMGARISEYLLEKSRVI-KQAAREKNFHIFYYIYAGLHHQKK 546

Query: 395 LDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFS 454
           L  + L   +  RY+ AD T   +      + ++   +F+ I      I F D ++    
Sbjct: 547 LSDFRLPEEKPPRYI-ADETGRVMHD--ITSKESYRRQFEAIQHCFRIIGFTDKEVHSVY 603

Query: 455 NVLAAILLIGEVEFE--SSAENT--AELANPEVAANG 487
            +LA IL IG +EF   SS   T  +E+ N E   N 
Sbjct: 604 RILAGILNIGNIEFAAISSQHQTDKSEVPNAEALQNA 640

Probable actin-based motor with a protein kinase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1EG27|MYO3B_MOUSE Myosin-IIIb OS=Mus musculus GN=Myo3b PE=2 SV=2

 Score =  319 bits (817), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 290/517 (56%), Gaps = 34/517 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I++IL   + G+  LH + +IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct: 116 LDEAVISYILYGALLGLQHLHCHRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR 175

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++ C  +    YD R DVW+LGITAIELGDG PP  +MHP + LF+
Sbjct: 176 RNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFEMHPVKMLFK 235

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNPPP L    +W + +  FI++CL K+ E RP ++ LL+HPFI       L L    
Sbjct: 236 IPRNPPPTLLHPDSWCEEFNHFISQCLIKDFEKRPSVTHLLDHPFIKGTQGKVLCLQKQL 295

Query: 181 CQ-YKDQELQT---------MHV---------------EDLAALETISEDNIVQELEERH 215
            +  +DQ+ +          MH                +DL  LE + ED I+  L++R+
Sbjct: 296 AKVLQDQKHRNPVAKTRHERMHTGRPHRVEDAGKCCLEDDLVNLEVLDEDTIIYWLQKRY 355

Query: 216 NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHE 275
                Y++VGD+L+ +NP  +L++Y  ++   Y    RS N PHI+A AD+AYQ ++   
Sbjct: 356 ADALIYTYVGDILIALNPFQNLSIYSPQFSRLYHGVKRSSNPPHIFASADNAYQCLVTFS 415

Query: 276 EAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK-VGEKIEKCVNVIHAIGNAGTPINQ 334
           + Q IV++GE+ +GKT S   +++HL FLG+   + + +KI +  +++ A GNA T IN 
Sbjct: 416 KDQCIVISGESGSGKTESAHLIVQHLTFLGKADNQTLRQKILQVNSLVEAFGNARTAIND 475

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NS+R   Y+++ F  +G + GA    Y LEK RV   +   + NFHIFYY Y  +    +
Sbjct: 476 NSSRFGKYLEMMFTPTGAVMGARISEYLLEKSRVI-QQAAGEKNFHIFYYIYAGLYHQKK 534

Query: 395 LDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFS 454
           L ++ L   +  RY+  +          +E+  T   +F+ I      I F D ++    
Sbjct: 535 LAEFRLPEEKPPRYIAGETERVMQDITSKESYRT---QFEAIQHCFKIIGFADKEVHSVY 591

Query: 455 NVLAAILLIGEVEFESSAE----NTAELANPEVAANG 487
            +LA IL IG +EF + +     + +E+ NPE   N 
Sbjct: 592 RILAGILNIGSIEFAAISSQHQTDKSEVPNPEALENA 628

Probable actin-based motor with a protein kinase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8K3H5|MYO3A_MOUSE Myosin-IIIa OS=Mus musculus GN=Myo3a PE=2 SV=1

 Score =  318 bits (814), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 194/504 (38%), Positives = 274/504 (54%), Gaps = 41/504 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           MSE  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S + ++T  +
Sbjct: 122 MSEPVIAYILHEALMGLQHLHSNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLSSTRHR 181

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  ++HP RALF+
Sbjct: 182 LNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLAELHPMRALFK 241

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNPPP L +   WS  + DFI++CL K+ E RP +S+LL+H FIT +   D+ L    
Sbjct: 242 IPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSDLLKHKFITQIEGKDVILQKQL 301

Query: 181 CQYKD-------------QELQTMH-------------VEDLAALETISEDNIVQELEER 214
            ++ D             + + T               V+DLA L+ + E      L   
Sbjct: 302 MEFIDIHQCLGSTEKARHERIHTKKGNLNRSLISSLKDVDDLATLDVLDEPTASPHLHPC 361

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
           H+    +  V D+L+ +NP   L +Y  K    Y    R+ N PHI+A+AD  YQ M+ +
Sbjct: 362 HSRDQIHIHVADILIALNPFQSLGIYSPKLSRLYIGAKRTANPPHIFAMADLGYQSMVTY 421

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK-VGEKIEKCVNVIHAIGNAGTPIN 333
              Q IV++GE+ AGKT S   L++ L  LG+   + + EKI +  N++ A GNA T IN
Sbjct: 422 NADQCIVISGESGAGKTESAHLLVQQLTVLGKANNRTLQEKILQMNNLVEAFGNACTIIN 481

Query: 334 QNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAG 393
            NS+R   Y+++ F SSG + GA    Y LEK RV  ++   + NFHIFYY Y  +    
Sbjct: 482 DNSSRFGKYLEMKFTSSGAVVGAQISEYLLEKSRVI-HQAMGEKNFHIFYYIYGGLAEKK 540

Query: 394 ELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDI----- 448
           +L  Y     +  RYL+ D          R   D     F +    LI+  F  I     
Sbjct: 541 KLALYKSPEHKPPRYLQND--------NLRTVQDMMNNSFYKSQYELIEQCFKVIGFTME 592

Query: 449 QMEIFSNVLAAILLIGEVEFESSA 472
           Q+    +VLAAIL +G +EF S A
Sbjct: 593 QLASVYSVLAAILNVGNIEFSSVA 616

Probable actin-based motor with a protein kinase activity. Probably plays a role in vision and hearing.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q23356|MIG15_CAEEL Serine/threonine-protein kinase mig-15 OS=Caenorhabditis elegans GN=mig-15 PE=2 SV=3

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 113/170 (66%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+I +EI+ G+  LH++ VIHRD++G NVLLT   EVK+VDFG+S +   T  +
Sbjct: 123 LKEEWIAYICREILRGLYHLHQSKVIHRDIKGQNVLLTDSAEVKLVDFGVSAQLDKTVGR 182

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD+R D+W+LGITA+E+ +G PP  DMHP RALF 
Sbjct: 183 RNTFIGTPYWMAPEVIACDESPEATYDSRSDLWSLGITALEMAEGHPPLCDMHPMRALFL 242

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
           I RNPPP L R   W++ +  FI   L K+   RPY   LL HPFI   P
Sbjct: 243 IPRNPPPKLKRNKKWTKKFETFIETVLVKDYHQRPYTGALLRHPFIKEQP 292

Involved in cell migration and signal transduction. Important in several developmental processes including epidermal development, Q neuroblast migrations and muscle arm targeting. Required with ina-1/pat-3 to stabilize the commissural axons growth cone along a precise direction and are required for the cell to respond appropriately when signaling in the growth cone must change.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P83510|TNIK_MOUSE Traf2 and NCK-interacting protein kinase OS=Mus musculus GN=Tnik PE=1 SV=2

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 5/185 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+I +EI+ G+  LH++ VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 125 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 184

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD + D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 185 RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL 244

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNP P L ++  WS+ +  FI  CL KN   RP   +L++HPFI   P        V 
Sbjct: 245 IPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQPNE----RQVR 299

Query: 181 CQYKD 185
            Q KD
Sbjct: 300 IQLKD 304

Serine/threonine kinase that acts as an essential activator of the Wnt signaling pathway. Recruited to promoters of Wnt target genes and required to activate their expression. May act by phosphorylating TCF4/TCF7L2. Appears to act upstream of the JUN N-terminal pathway. May play a role in the response to environmental stress. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it may play a role in cytoskeletal rearrangements and regulate cell spreading.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UKE5|TNIK_HUMAN TRAF2 and NCK-interacting protein kinase OS=Homo sapiens GN=TNIK PE=1 SV=1

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 5/185 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+I +EI+ G+  LH++ VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 125 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 184

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD + D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 185 RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL 244

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNP P L ++  WS+ +  FI  CL KN   RP   +L++HPFI   P        V 
Sbjct: 245 IPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQPNE----RQVR 299

Query: 181 CQYKD 185
            Q KD
Sbjct: 300 IQLKD 304

Serine/threonine kinase that acts as an essential activator of the Wnt signaling pathway. Recruited to promoters of Wnt target genes and required to activate their expression. May act by phosphorylating TCF4/TCF7L2. Appears to act upstream of the JUN N-terminal pathway. May play a role in the response to environmental stress. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it may play a role in cytoskeletal rearrangements and regulate cell spreading. Phosphorylates SMAD1 on Thr-322.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8N4C8|MINK1_HUMAN Misshapen-like kinase 1 OS=Homo sapiens GN=MINK1 PE=1 SV=2

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 119/185 (64%), Gaps = 5/185 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA+I +EI+ G+  LH + VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 125 LKEDCIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 184

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD R D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 185 RNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFL 244

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNPPP L ++  WS+ ++DFI  CL K    RP   +LL+ PFI   P        V 
Sbjct: 245 IPRNPPPRL-KSKKWSKKFIDFIDTCLIKTYLSRPPTEQLLKFPFIRDQPTE----RQVR 299

Query: 181 CQYKD 185
            Q KD
Sbjct: 300 IQLKD 304

Isoform 4 can activate the JNK pathway. Involved in the regulation of actin cytoskeleton reorganization, cell-matrix adhesion, cell-cell adhesion and cell migration.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9JM52|MINK1_MOUSE Misshapen-like kinase 1 OS=Mus musculus GN=Mink1 PE=1 SV=3

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 118/185 (63%), Gaps = 5/185 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA+I +EI+ G+  LH + VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 125 LKEDCIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 184

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD R D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 185 RNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFL 244

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNPPP L ++  WS+ + DFI  CL K    RP   +LL+ PFI   P        V 
Sbjct: 245 IPRNPPPRL-KSKKWSKKFTDFIDTCLIKTYLSRPPTEQLLKFPFIRDQPTE----RQVR 299

Query: 181 CQYKD 185
            Q KD
Sbjct: 300 IQLKD 304

Serine/threonine kinase which acts as a negative regulator of Ras-related Rap2-mediated signal transduction to control neuronal structure and AMPA receptor trafficking. Required for normal synaptic density, dendrite complexity, as well as surface AMPA receptor expression in hippocampal neurons. Can activate the JNK and MAPK14/p38 pathways and mediates stimulation of the stress-activated protein kinase MAPK14/p38 MAPK downstream of the Raf/ERK pathway. Phosphorylates: TANC1 upon stimulation by RAP2A, MBP and SMAD1. Has an essential function in negative selection of thymocytes, perhaps by coupling NCK1 to activation of JNK1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
340709079	1586	PREDICTED: neither inactivation nor afte	0.987	0.303	0.533	1e-157
340709081	1589	PREDICTED: neither inactivation nor afte	0.987	0.303	0.533	1e-157
380016490	1349	PREDICTED: neither inactivation nor afte	0.987	0.357	0.527	1e-157
328792346	1587	PREDICTED: neither inactivation nor afte	0.987	0.303	0.525	1e-157
350419389	1589	PREDICTED: neither inactivation nor afte	0.987	0.303	0.533	1e-157
332020102	1571	Neither inactivation nor afterpotential	0.983	0.305	0.527	1e-156
383865054	1583	PREDICTED: neither inactivation nor afte	0.987	0.304	0.526	1e-156
158298612	1581	AGAP009730-PA [Anopheles gambiae str. PE	0.981	0.302	0.537	1e-153
170040124	1557	myosin IIIA [Culex quinquefasciatus] gi|	0.989	0.310	0.529	1e-153
322788655	1553	hypothetical protein SINV_08357 [Solenop	0.989	0.311	0.519	1e-152

>gi|340709079|ref|XP_003393142.1| PREDICTED: neither inactivation nor afterpotential protein C-like isoform 1 [Bombus terrestris]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/512 (53%), Positives = 360/512 (70%), Gaps = 30/512 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HI FILKE+I  MV+L+E++V+HRD+RGSN+LLT++GEVK+VDFGLS+       K
Sbjct: 153 MREEHIGFILKEVIQAMVYLNEHNVMHRDIRGSNILLTREGEVKLVDFGLSKMFQGEMGK 212

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSPSWMAPE+        +GY +R DVWA+GITAIEL DGKPPF+DMHPTRALFQ
Sbjct: 213 RYTCIGSPSWMAPEVAMSKGNSSEGYGSRADVWAVGITAIELADGKPPFQDMHPTRALFQ 272

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS--- 177
           IVRNPPP LYR SNWSQ++ DFIAECLEKNPE+RP+M+E+ EHPF+     ND  L+   
Sbjct: 273 IVRNPPPNLYRPSNWSQNFNDFIAECLEKNPENRPFMAEIAEHPFLADSSANDFLLAKEI 332

Query: 178 ----TVNC-------------------QYKDQELQTMHVEDLAALETISEDNIVQELEER 214
               T  C                    ++   L+ M +EDLAALET++ED I+ EL ER
Sbjct: 333 KILMTDVCAKGKHVRRPEVIVRKGFLKTHQTDPLEPMFMEDLAALETLTEDTILDELHER 392

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
                ++SF+GD+LL +NPN   ++YG+ YH KY+FKSRSDN PHIY+VADSAYQD++H+
Sbjct: 393 LRQGYYHSFIGDILLILNPNEQQDIYGSDYHTKYQFKSRSDNAPHIYSVADSAYQDVLHN 452

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQ 334
           EEAQHI+LAGE+ +GKTT+L HL++HL++LG+    +G ++ + + VIHA  NA TP+N 
Sbjct: 453 EEAQHILLAGESNSGKTTNLMHLVRHLMYLGKSLQDIGARLMRAIKVIHAFSNAATPLNP 512

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NSTR VL ++ T+GSSGK SGAIFWLYQLEKWRV+  RD  Q+NFH+ YYFYD ++A  +
Sbjct: 513 NSTRCVLELETTYGSSGKASGAIFWLYQLEKWRVS-TRDRNQSNFHVLYYFYDGLDAISK 571

Query: 395 LDKYFLSPGRKYRYLRADV--TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEI 452
           L +Y L PGR+ RYLR     T+ K     R  P  NVAKF+E+ +NL  +E ++   E 
Sbjct: 572 LKQYHLPPGRRMRYLRISEKGTERKRSFKVRNDPRGNVAKFEELKENLTILEMEEY-CET 630

Query: 453 FSNVLAAILLIGEVEFESSAENTAELANPEVA 484
              +LAAIL +GE+ F       A++ N + A
Sbjct: 631 IWRILAAILNLGEIRFVEGNNGEADMDNNDAA 662

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709081|ref|XP_003393143.1| PREDICTED: neither inactivation nor afterpotential protein C-like isoform 2 [Bombus terrestris]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/512 (53%), Positives = 360/512 (70%), Gaps = 30/512 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HI FILKE+I  MV+L+E++V+HRD+RGSN+LLT++GEVK+VDFGLS+       K
Sbjct: 153 MREEHIGFILKEVIQAMVYLNEHNVMHRDIRGSNILLTREGEVKLVDFGLSKMFQGEMGK 212

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSPSWMAPE+        +GY +R DVWA+GITAIEL DGKPPF+DMHPTRALFQ
Sbjct: 213 RYTCIGSPSWMAPEVAMSKGNSSEGYGSRADVWAVGITAIELADGKPPFQDMHPTRALFQ 272

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS--- 177
           IVRNPPP LYR SNWSQ++ DFIAECLEKNPE+RP+M+E+ EHPF+     ND  L+   
Sbjct: 273 IVRNPPPNLYRPSNWSQNFNDFIAECLEKNPENRPFMAEIAEHPFLADSSANDFLLAKEI 332

Query: 178 ----TVNC-------------------QYKDQELQTMHVEDLAALETISEDNIVQELEER 214
               T  C                    ++   L+ M +EDLAALET++ED I+ EL ER
Sbjct: 333 KILMTDVCAKGKHVRRPEVIVRKGFLKTHQTDPLEPMFMEDLAALETLTEDTILDELHER 392

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
                ++SF+GD+LL +NPN   ++YG+ YH KY+FKSRSDN PHIY+VADSAYQD++H+
Sbjct: 393 LRQGYYHSFIGDILLILNPNEQQDIYGSDYHTKYQFKSRSDNAPHIYSVADSAYQDVLHN 452

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQ 334
           EEAQHI+LAGE+ +GKTT+L HL++HL++LG+    +G ++ + + VIHA  NA TP+N 
Sbjct: 453 EEAQHILLAGESNSGKTTNLMHLVRHLMYLGKSLQDIGARLMRAIKVIHAFSNAATPLNP 512

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NSTR VL ++ T+GSSGK SGAIFWLYQLEKWRV+  RD  Q+NFH+ YYFYD ++A  +
Sbjct: 513 NSTRCVLELETTYGSSGKASGAIFWLYQLEKWRVS-TRDRNQSNFHVLYYFYDGLDAISK 571

Query: 395 LDKYFLSPGRKYRYLRADV--TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEI 452
           L +Y L PGR+ RYLR     T+ K     R  P  NVAKF+E+ +NL  +E ++   E 
Sbjct: 572 LKQYHLPPGRRMRYLRISEKGTERKRSFKVRNDPRGNVAKFEELKENLTILEMEEY-CET 630

Query: 453 FSNVLAAILLIGEVEFESSAENTAELANPEVA 484
              +LAAIL +GE+ F       A++ N + A
Sbjct: 631 IWRILAAILNLGEIRFVEGNNGEADMDNNDAA 662

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016490|ref|XP_003692216.1| PREDICTED: neither inactivation nor afterpotential protein C-like [Apis florea]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/512 (52%), Positives = 359/512 (70%), Gaps = 30/512 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HI FIL+E+I  M++L+EN+V+HRD+RGSN+LLTK+GE+K+VDFGLSR       K
Sbjct: 103 MREEHIGFILREVIQAMIYLNENNVMHRDIRGSNILLTKEGEIKLVDFGLSRTCQAEIGK 162

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSPSWMAPE+        +GY NR DVWA+GITAIEL DGKPPF+DMHPTRALFQ
Sbjct: 163 RYTCVGSPSWMAPEVAISKGNNSEGYGNRADVWAIGITAIELADGKPPFQDMHPTRALFQ 222

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV- 179
           I+RNPPP L R SNWSQ++ DFI+ECLEKNPE+RP+M E++EHPF+  LP+ND  L+   
Sbjct: 223 IIRNPPPTLNRPSNWSQNFNDFISECLEKNPENRPFMGEIIEHPFLAELPDNDFLLTKEI 282

Query: 180 ------NCQYKDQE-------------------LQTMHVEDLAALETISEDNIVQELEER 214
                  C+   QE                   L+ M +EDLAALET++ED I+ EL ER
Sbjct: 283 KILMMDACEKGKQERKLEILVRKGFLKTHQTDPLEPMFMEDLAALETLTEDAILDELHER 342

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
                ++SF+GD+LL +NPN   ++YG+ +H KY+FKSRSDN PHIY+VADSAYQD+MH+
Sbjct: 343 LRQGYYHSFIGDILLILNPNEQQDIYGSDFHTKYQFKSRSDNAPHIYSVADSAYQDVMHN 402

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQ 334
            EAQHI+LAGE+ +GKTT++ HL++HL++LG+    +G +  K + +I A  NA TP+N 
Sbjct: 403 NEAQHILLAGESNSGKTTNMMHLIRHLMYLGKSLQDIGGRFIKAIKMIQAFSNAATPLNP 462

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NSTR +L +Q T+G+SGK SG IFWLYQLEKWRV+  RD  Q+NFH+ YYFYD M+A  +
Sbjct: 463 NSTRCLLQVQTTYGTSGKASGGIFWLYQLEKWRVS-TRDRNQSNFHVLYYFYDGMDAVNK 521

Query: 395 LDKYFLSPGRKYRYLRADV--TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEI 452
           L  Y L PGR+ RYLR     T+ K     R  P  NVAKF+E+ ++L  +E ++   E+
Sbjct: 522 LKHYHLPPGRRMRYLRISEKGTERKRSFKVRNDPRGNVAKFEELKEDLKILEMEE-HCEM 580

Query: 453 FSNVLAAILLIGEVEFESSAENTAELANPEVA 484
              VLAAIL++GE+ F       A++ N + A
Sbjct: 581 IWKVLAAILILGEIRFIEDNNGEADMDNNDAA 612

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792346|ref|XP_393429.3| PREDICTED: neither inactivation nor afterpotential protein C isoform 1 [Apis mellifera]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/512 (52%), Positives = 360/512 (70%), Gaps = 30/512 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HI+FILKE+I  M++L+EN+V+HRD+RGSN+LLTK+GE+K+VDFGLSR   +   K
Sbjct: 150 MREEHISFILKEVIQAMIYLNENNVMHRDIRGSNILLTKEGEIKLVDFGLSRTCQSEIGK 209

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSPSWMAPE+        +GY NR DVWA+GITAIEL DGKPPF+DMHPTRALFQ
Sbjct: 210 RYTCVGSPSWMAPEVAISKGNNSEGYGNRADVWAIGITAIELADGKPPFQDMHPTRALFQ 269

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV- 179
           I+RNPPP L R SNWSQ++ DFI+ECLEKNPE+RP+M E++EHPF+  LP+ND  L+   
Sbjct: 270 IIRNPPPTLNRPSNWSQNFNDFISECLEKNPENRPFMGEIIEHPFLADLPDNDFLLTKEI 329

Query: 180 ------NCQYKDQE-------------------LQTMHVEDLAALETISEDNIVQELEER 214
                  C+   QE                   L+ M +EDLAALET++ED I+ EL ER
Sbjct: 330 KILMMDACEKGKQERKLEILVRKSFLKTHQTDPLEPMFMEDLAALETLTEDAILDELHER 389

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
                ++SF+GD+LL +NPN   ++YG+ +H KY+FKSRSDN PHIY+VADSAYQD+MH+
Sbjct: 390 LRQGYYHSFIGDILLILNPNEQQDIYGSDFHTKYQFKSRSDNAPHIYSVADSAYQDVMHN 449

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQ 334
            EAQHI+LAGE+ +GKTT++ +L++HL++LG+    +G +  + + +I A  NA TP+N 
Sbjct: 450 NEAQHILLAGESNSGKTTNMMYLIQHLMYLGKSLQDIGGRFIRAIKIIQAFSNAATPLNP 509

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NSTR VL +Q T+GSSGK SG IFWLYQLEKWRV+  RD  Q+NFH+ YYFYD M+A  +
Sbjct: 510 NSTRCVLQVQTTYGSSGKASGGIFWLYQLEKWRVS-TRDRNQSNFHVLYYFYDGMDAINK 568

Query: 395 LDKYFLSPGRKYRYLRADV--TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEI 452
           L +Y L PGR+ RYLR     T+ K     R  P  NV KF++  ++L  +E ++   E+
Sbjct: 569 LKQYHLPPGRRMRYLRISEKGTERKRSFKVRNDPRGNVTKFEDFKESLKILEMEE-HCEM 627

Query: 453 FSNVLAAILLIGEVEFESSAENTAELANPEVA 484
              VLAAIL++GE+ F       A++ N + A
Sbjct: 628 IWKVLAAILILGEIRFIEDNNGEADMDNNDAA 659

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419389|ref|XP_003492164.1| PREDICTED: neither inactivation nor afterpotential protein C-like [Bombus impatiens]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/512 (53%), Positives = 360/512 (70%), Gaps = 30/512 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HI FILKE+I  MV+L+E++V+HRD+RGSN+LLTK+GEVK+VDFGLS+       K
Sbjct: 153 MREEHIGFILKEVIQAMVYLNEHNVMHRDIRGSNILLTKEGEVKLVDFGLSKMFEGEMGK 212

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSPSWMAPE+        +GY +R DVWA+GITAIEL DGKPPF+DMHPTRALFQ
Sbjct: 213 RYTCIGSPSWMAPEVAMSKGNSSEGYGSRADVWAIGITAIELADGKPPFQDMHPTRALFQ 272

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS--- 177
           IVRNPPP LYR SNWSQ++ DFIAECLEKNPE+RP+M+E+ EHPF+     +D  L+   
Sbjct: 273 IVRNPPPNLYRPSNWSQNFNDFIAECLEKNPENRPFMAEIAEHPFLADSSADDFLLAKEI 332

Query: 178 ----TVNC-------------------QYKDQELQTMHVEDLAALETISEDNIVQELEER 214
               T  C                    ++   L+ M +EDLAALET++ED I+ EL ER
Sbjct: 333 KILMTDVCAKGKHVRRPEVIVRKGFLKTHQTDPLEPMFMEDLAALETLTEDTILDELHER 392

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
                ++SF+GD+LL +NPN   ++YG+ YH KY+FKSRSDN PHIY+VADSAYQD++H+
Sbjct: 393 LRQGYYHSFIGDILLILNPNEQQDIYGSDYHTKYQFKSRSDNAPHIYSVADSAYQDVLHN 452

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQ 334
           EEAQHI+LAGE+ +GKTT+L HL++HL++LG+    +G ++ + + VIHA  NA TP+N 
Sbjct: 453 EEAQHILLAGESNSGKTTNLMHLVRHLMYLGKSLQDIGARLMRAIKVIHAFSNAATPLNP 512

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           NSTR VL ++ T+GSSGK SGAIFWLYQLEKWRV+  RD  Q+NFH+ YYFYD ++A  +
Sbjct: 513 NSTRCVLELETTYGSSGKASGAIFWLYQLEKWRVS-TRDRNQSNFHVLYYFYDGLDAISK 571

Query: 395 LDKYFLSPGRKYRYLRADV--TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEI 452
           L +Y L PGR+ RYLR     T+ K     R  P  NVAKF+E+ +NL  +E ++   E 
Sbjct: 572 LKQYHLPPGRRMRYLRISEKGTERKRSFKVRNDPRGNVAKFEELKENLTILEMEEY-CET 630

Query: 453 FSNVLAAILLIGEVEFESSAENTAELANPEVA 484
              +LAAIL +GE+ F       A++ N + A
Sbjct: 631 IWKILAAILNLGEIRFVEGNNGEADMDNHDAA 662

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020102|gb|EGI60548.1| Neither inactivation nor afterpotential protein C [Acromyrmex echinatior]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/514 (52%), Positives = 367/514 (71%), Gaps = 34/514 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+HIAF+LKE+I  ++ LHE++VIHRD+RG+N++LTK+GEVK+VDFGLSR   N  +K
Sbjct: 152 IQEEHIAFVLKEVIKALIHLHEHNVIHRDIRGNNIVLTKEGEVKLVDFGLSRTMKNELEK 211

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           ++T++GSPSWMAPE++      VDGYD+R+DVWA+GITAIE+ DGK PFE+MHPTRALFQ
Sbjct: 212 RRTYIGSPSWMAPEMIGSKDSGVDGYDSRVDVWAIGITAIEMADGKAPFENMHPTRALFQ 271

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS--- 177
           IVRNPPP LYR +NWS++  DFI+ECLEKNPE+RPYM E++EHPF++ LPEND  L+   
Sbjct: 272 IVRNPPPTLYRPTNWSKNLNDFISECLEKNPENRPYMMEIIEHPFLSELPENDYPLTQEI 331

Query: 178 ---TVNCQYK--------------------DQELQTMHVEDLAALETISEDNIVQELEER 214
              T++   K                    D+  + M  EDLAAL+T++ED I+ EL +R
Sbjct: 332 KALTMDLSEKGRKQRKTELIVRQGFLKTHQDESPEQMLTEDLAALDTLTEDVILDELRDR 391

Query: 215 HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHH 274
                +++F+GD+LL +NPN   ++YG  +H KY+ KSRSDN PHIY+VADSA+QD+M +
Sbjct: 392 LRRGEYHTFIGDILLILNPNEENDIYGVHHHAKYQCKSRSDNAPHIYSVADSAFQDVMLN 451

Query: 275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQ 334
           EE QHI+LAGE+ +GKTT++ HL++HL+FLG+G    G ++ + + +IHA  NAGTP+N 
Sbjct: 452 EELQHILLAGESNSGKTTNMLHLVEHLMFLGKGLHDTGARVLQAIKIIHAFTNAGTPLNA 511

Query: 335 NSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGE 394
           +STR +L  Q TFGS+GK SGAIFWLYQLEKWRV+  RD  QANFH+FYYFYD +EA   
Sbjct: 512 DSTRCILQTQTTFGSTGKASGAIFWLYQLEKWRVS-TRDRNQANFHVFYYFYDDLEATEN 570

Query: 395 LDKYFLSPGRKYRYLRADVTDDKLPKGP----RETPDTNVAKFQEIYQNLIDIEFDDIQM 450
           L  YFL  GRK RYLR  +TD  + K      R  P  NV KF+E+ +    ++ ++   
Sbjct: 571 LKSYFLPSGRKLRYLR--ITDKNIEKKRAFKVRSDPQNNVIKFKELTEYFKFMDMEEYCD 628

Query: 451 EIFSNVLAAILLIGEVEFESSAENTAELANPEVA 484
            I+  +LAAIL++GE+ F       AEL + E+A
Sbjct: 629 TIWK-ILAAILILGEIRFVEGNNGEAELDDNEIA 661

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865054|ref|XP_003707990.1| PREDICTED: neither inactivation nor afterpotential protein C-like [Megachile rotundata]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/513 (52%), Positives = 356/513 (69%), Gaps = 31/513 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+HI FIL+E+I  M FLHEN+V+HRD+RGSN+LLTK+GEVK+VDFGLSR       K
Sbjct: 151 MREEHIGFILREVIQAMAFLHENNVMHRDIRGSNILLTKEGEVKLVDFGLSRTVKGEMGK 210

Query: 61  KKTFLGSPSWMAPEIMRC-GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           + T +GSP WMAPE+    G+    GY NR DVWA+GITAIEL DGKPPF+DMHPTRALF
Sbjct: 211 RYTCIGSPCWMAPEVAASKGNTSDAGYGNRADVWAIGITAIELADGKPPFQDMHPTRALF 270

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS-- 177
           QIVRNPPP LYR SNWSQ++ DFIAECLEKNP++RP+M+E+ EHPF+  +PEND  ++  
Sbjct: 271 QIVRNPPPNLYRPSNWSQNFNDFIAECLEKNPDNRPFMAEIAEHPFLADIPENDFLMTKE 330

Query: 178 ---------TVNCQYKDQE---------------LQTMHVEDLAALETISEDNIVQELEE 213
                    T   Q +  E               L+ M +EDLAALET++ED I+ EL +
Sbjct: 331 IKVLMMDAGTKGKQERRPEVIVRKGFLKTHQTDPLEPMFMEDLAALETLTEDAILDELHD 390

Query: 214 RHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMH 273
           R     ++SF+GD+LL +NPN   ++YG+ YH KY+FKSRSDN PH+Y+VADSA+QD++H
Sbjct: 391 RLRQGYYHSFIGDILLILNPNEKQDIYGSDYHTKYQFKSRSDNAPHVYSVADSAFQDVLH 450

Query: 274 HEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPIN 333
           ++E QHI+LAGE+ +GKTT++ HL++HL++LG+     G ++ + + V+HA  NA TP+N
Sbjct: 451 NDEPQHILLAGESNSGKTTNMMHLIQHLMYLGKSLQDTGARLMRAIKVLHAFCNAATPLN 510

Query: 334 QNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAG 393
            NSTR V  +Q T+GSSGK SG IFWLYQLEKWRV+  RD  Q+NFH+FYYFYD ++   
Sbjct: 511 PNSTRCVFQVQTTYGSSGKASGGIFWLYQLEKWRVS-TRDRNQSNFHVFYYFYDGLDVTN 569

Query: 394 ELDKYFLSPGRKYRYLRADV--TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQME 451
           +L +Y LS GR+ RYLR     T+ K     R  P  NV KF+E+ +NL  +E ++   E
Sbjct: 570 KLKQYNLSSGRRMRYLRISEKGTERKRSFKVRNDPRGNVTKFEELRENLKILEMEEY-CE 628

Query: 452 IFSNVLAAILLIGEVEFESSAENTAELANPEVA 484
                LAAIL +GEV F       A++ N + A
Sbjct: 629 TIWKTLAAILCLGEVRFVEGNNGEADMDNHDAA 661

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298612|ref|XP_318814.4| AGAP009730-PA [Anopheles gambiae str. PEST] gi|157013968|gb|EAA14178.4| AGAP009730-PA [Anopheles gambiae str. PEST]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/508 (53%), Positives = 355/508 (69%), Gaps = 29/508 (5%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  +A+IL+E+   +V+LHE+H++HRD+RGSN+LLTKDGEVK+ D+GL+R+T +T  K+
Sbjct: 120 SELQLAYILREVSRALVYLHEHHIVHRDVRGSNILLTKDGEVKLCDYGLARDTKSTLGKR 179

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            T +GSP WMAPE++     + D YDNR DVWALGITAIELGDGKPPF DMH TRA+FQI
Sbjct: 180 GTCIGSPCWMAPEVVTSSKSDKDVYDNRSDVWALGITAIELGDGKPPFADMHATRAMFQI 239

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS---- 177
           VRNPPP LYR SNWSQ Y DFIAECLEKNP+HRP++ E++EHPF+T +PEND HLS    
Sbjct: 240 VRNPPPTLYRQSNWSQEYNDFIAECLEKNPDHRPFIMEVIEHPFLTQVPENDYHLSQELK 299

Query: 178 ------------------TVNCQYKDQEL--QTMHVEDLAALETISEDNIVQELEERHNS 217
                              V    K  E   + +HVEDLAALE +SE+ I++E+ +R+ +
Sbjct: 300 MLAESVQSTQLPKKEEVAVVRGMLKSAEARPEKLHVEDLAALEQLSEETILEEITQRYKN 359

Query: 218 KNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEA 277
            N Y+FVGDVL+ +NPN  +  Y   +H KY FKSRSDN PH++A+ADSAYQDM+HHEE 
Sbjct: 360 GNTYTFVGDVLISLNPNETIPEYVRGFHSKYMFKSRSDNAPHVFAIADSAYQDMLHHEEP 419

Query: 278 QHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNST 337
           QHI+LAGE+ +GKTT+LK L+KHL  LG+G   V E+I      + A+ NAGTP+N NST
Sbjct: 420 QHIILAGESYSGKTTNLKLLMKHLGVLGEGNPGVYERIVNGYKALSALTNAGTPLNPNST 479

Query: 338 RHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDK 397
           R ++  Q+TFGS+GKLSGAIFW+Y LEK R++   +  Q+NFHIFYYFYD M+A   L  
Sbjct: 480 RSIVQAQLTFGSTGKLSGAIFWVYLLEKLRISST-NMNQSNFHIFYYFYDTMDAEERLLD 538

Query: 398 YFLSPGRKYRYLRAD--VTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSN 455
           + L  GR YRYLR    ++ DKL K  R+    NV  F+E  + L+ +E     +E    
Sbjct: 539 FSLEGGRNYRYLRISDGMSSDKL-KYCRDDIAGNVRAFKEFEEQLLALEISQDILETIYR 597

Query: 456 VLAAILLIGEVEFESSAENTAELANPEV 483
            LAAILL+GEV F+ + +   EL + EV
Sbjct: 598 TLAAILLLGEVRFKET-DGMTELESFEV 624

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040124|ref|XP_001847861.1| myosin IIIA [Culex quinquefasciatus] gi|167863673|gb|EDS27056.1| myosin IIIA [Culex quinquefasciatus]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/510 (52%), Positives = 354/510 (69%), Gaps = 27/510 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE+ IA+IL+E    +++LHENH+IHRD+RG N+LLT+DGEVK+ DFGLSR+  +T  K
Sbjct: 118 VSEEQIAYILRETAKALIYLHENHIIHRDVRGHNILLTRDGEVKLCDFGLSRDIKSTLGK 177

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +GSP WMAPEI+  G  + + YDNR DVWALGITAIELGDGKPPF +MHPTR +FQ
Sbjct: 178 RGTCIGSPCWMAPEIITSGKNDNEVYDNRSDVWALGITAIELGDGKPPFHEMHPTRIMFQ 237

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLST-- 178
           IVRNPPP LYR +NW+Q+Y DFI ECLEKNP+HRP+  E++EHPF+T LPEND H+    
Sbjct: 238 IVRNPPPTLYRPANWTQNYNDFINECLEKNPDHRPFSMEIIEHPFLTELPENDYHIGQEL 297

Query: 179 ---------VNCQYKDQ-------------ELQTMHVEDLAALETISEDNIVQELEERHN 216
                    V   +KD+             + + MHVEDLAALET+SE+ I+ EL +R+ 
Sbjct: 298 RMLAESVQDVLLIHKDEMKFMKGALKGPDNKTEKMHVEDLAALETLSEETILDELIQRYK 357

Query: 217 SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEE 276
           S + Y+FVGDVLL +NPNT +      +H KY  KSRSDN PHI+A+ADSAYQDM+HHEE
Sbjct: 358 SGSTYTFVGDVLLSMNPNTEMPDLPRGFHSKYNCKSRSDNSPHIFAIADSAYQDMLHHEE 417

Query: 277 AQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNS 336
            QHI+++GE+ +GKTT+ K  LKHL +LG+G + V +KI+    V+ A+ NAGTP+N +S
Sbjct: 418 PQHIIMSGESYSGKTTNAKLCLKHLAYLGEGNSGVAQKIQSGYKVLSALVNAGTPLNSDS 477

Query: 337 TRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELD 396
           TR ++  Q+TFGS+GKLSGAIFW+Y LEK R++   +  Q+NFHIFYYFYDAMEA   L 
Sbjct: 478 TRAIVQTQMTFGSTGKLSGAIFWVYLLEKLRISST-NMNQSNFHIFYYFYDAMEAEQRLR 536

Query: 397 KYFLSPGRKYRYLR-ADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSN 455
            + L  GR YRYLR  + T     K  R+    NV  F +  Q L+ +E     +E F  
Sbjct: 537 DFSLERGRNYRYLRIPESTAGTKLKYVRDDIQGNVTAFHDFEQLLLGLEISPELVETFYR 596

Query: 456 VLAAILLIGEVEFESSAENTAELANPEVAA 485
            LA++LL+GEV F  + +   EL + EV  
Sbjct: 597 TLASVLLLGEVRFRDN-DGVTELEDYEVVG 625

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788655|gb|EFZ14256.1| hypothetical protein SINV_08357 [Solenopsis invicta]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/514 (51%), Positives = 359/514 (69%), Gaps = 31/514 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+HIAFIL+E+I  ++ LHE+++IHRD+RG+N++LTK+GEVK+VDFGLSR   N  +K
Sbjct: 145 IREEHIAFILREVIKALIHLHEHNIIHRDIRGNNIVLTKEGEVKLVDFGLSRTMTNELEK 204

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVD-GYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           + +++GSPSWMAPE++       D GYD+R+DVWA+GITAIEL D K PFEDMHPTRALF
Sbjct: 205 RHSYIGSPSWMAPEMVGSKDSGADSGYDSRVDVWAIGITAIELADSKAPFEDMHPTRALF 264

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS-- 177
           QIVRNPPP LYR +NWS++  DFI+ECLEKNPE+RPYM E++EHPF++ LPEND  L+  
Sbjct: 265 QIVRNPPPTLYRPANWSKNLNDFISECLEKNPENRPYMMEIIEHPFLSELPENDYPLTQE 324

Query: 178 ----TVNCQYKDQEL--------------------QTMHVEDLAALETISEDNIVQELEE 213
               T+    K ++L                    + M  EDLAAL+ I+ED I+ EL E
Sbjct: 325 IKALTMTLSEKSRKLRKSELIVRKGFLKTRQDEPPEQMLTEDLAALDIITEDIILNELRE 384

Query: 214 RHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMH 273
           R     +++F+GD+LL +NPN   ++YG  +H KY+ KSRSDN PHIY+VADSA+Q++M 
Sbjct: 385 RLERGEYHTFIGDILLVLNPNEEHDIYGDHHHAKYQSKSRSDNAPHIYSVADSAFQNVML 444

Query: 274 HEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPIN 333
           +E++QHI+LAGE+ +GKTT++ HL++HL+FLG+G    G  + + + +IHA  NA TP+N
Sbjct: 445 NEDSQHILLAGESNSGKTTNMLHLMEHLMFLGKGLRDTGAIVLRAIKIIHAFTNAATPLN 504

Query: 334 QNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAG 393
            NSTR +L  Q TFGS+GK SGAIFWLYQLEKWRV+  RD  Q+NFHIFYYFYD +EA+ 
Sbjct: 505 ANSTRCILQTQTTFGSTGKASGAIFWLYQLEKWRVS-TRDRNQSNFHIFYYFYDGLEASE 563

Query: 394 ELDKYFLSPGRKYRYLRA--DVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQME 451
            L  YFL  GRK RYLR     T+ K     R  P  N  K +E+ +    ++ ++   E
Sbjct: 564 NLQTYFLPSGRKLRYLRIIDKGTEKKRGFKVRNDPQNNAIKLKELEECFKYMDIEE-HCE 622

Query: 452 IFSNVLAAILLIGEVEFESSAENTAELANPEVAA 485
           I   +LAAIL++GE+ F       AEL N E+A 
Sbjct: 623 IIWKILAAILILGEIRFVEGNNGEAELDNNEIAT 656

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
FB|FBgn0002938	1501	ninaC "neither inactivation no	0.696	0.226	0.415	4.2e-120
UNIPROTKB|E2RQX5	1613	MYO3A "Uncharacterized protein	0.379	0.114	0.497	2.2e-83
UNIPROTKB|F5H0U9	664	MYO3A "Myosin-IIIa" [Homo sapi	0.360	0.265	0.522	2.5e-83
UNIPROTKB|Q8NEV4	1616	MYO3A "Myosin-IIIa" [Homo sapi	0.360	0.108	0.522	2.7e-83
UNIPROTKB|F1RTW9	596	MYO3A "Uncharacterized protein	0.360	0.295	0.502	1.7e-82
UNIPROTKB|E1C7H7	1624	MYO3A "Uncharacterized protein	0.411	0.123	0.475	3.2e-82
RGD|1560083	1614	Myo3a "myosin IIIA" [Rattus no	0.379	0.114	0.491	4.1e-82
UNIPROTKB|E1BP01	1626	MYO3A "Uncharacterized protein	0.360	0.108	0.508	8.7e-82
UNIPROTKB|E1C190	1119	MYO3B "Uncharacterized protein	0.360	0.157	0.482	1.2e-81
ZFIN|ZDB-GENE-041026-4	1775	myo3a "myosin IIIA" [Danio rer	0.448	0.123	0.445	1.9e-81

FB|FBgn0002938 ninaC "neither inactivation nor afterpotential C" [Drosophila melanogaster (taxid:7227)]

 Score = 669 (240.6 bits), Expect = 4.2e-120, Sum P(2) = 4.2e-120
 Identities = 145/349 (41%), Positives = 214/349 (61%)

Query:   142 FIAECLEKNPEHRPYMSELLE--HPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAAL 199
             F+ E +E   E R  ++E+LE      T   E +L +     +  D++ + M+ EDLAAL
Sbjct:   281 FLTELIENEDEMRSDIAEMLELSRDVKTLYKEPELFVDRGYVKRFDEKPEKMYPEDLAAL 340

Query:   200 ETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPH 259
             E   ++NI++ L  R      YSF+GD+LL +N N     +  ++H KY+FKSRS+N+PH
Sbjct:   341 ENPVDENIIESLRHRILMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQPH 400

Query:   260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGAAKVGEKIEKCV 319
             I++VAD AYQDM+HH+E QHIVL+GE+ +GK+T+         +LG G      ++E  +
Sbjct:   401 IFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNARLLIKHLCYLGDGNRGATGRVESSI 460

Query:   320 NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANF 379
               I  + NAGTP+N +STR VL   +TFG +GK+SGA+F +Y LEK RV    D  Q NF
Sbjct:   461 KAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRVA-TTDGTQHNF 519

Query:   380 HIFYYFYDAMEAAGELDKYFLSPGRKYRYLRA--DVTDDKLPKGPRETPDTNVAKFQEIY 437
             HIFYYFYD +    +L +Y L   R YRYLR   +V   KL K  R+ P+ NV +++E +
Sbjct:   520 HIFYYFYDFINQQNQLKEYNLKADRNYRYLRVPPEVPPSKL-KYRRDDPEGNVERYRE-F 577

Query:   438 QNLI-DIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA 485
             +N++ DI+F+  Q+E    VLAAIL IG + F  + +  AE+ N ++ +
Sbjct:   578 ENILRDIDFNHKQLETVRKVLAAILNIGNIRFRQNGKY-AEVENTDIVS 625

GO:0007604 "phototransduction, UV" evidence=IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0004672 "protein kinase activity" evidence=ISS

GO:0016461 "unconventional myosin complex" evidence=ISS;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;NAS;IDA

GO:0016028 "rhabdomere" evidence=IDA

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0008104 "protein localization" evidence=IMP;TAS

GO:0005516 "calmodulin binding" evidence=IMP;TAS

GO:0016062 "adaptation of rhodopsin mediated signaling" evidence=IMP;TAS

GO:0016059 "deactivation of rhodopsin mediated signaling" evidence=IMP;TAS

GO:0016027 "inaD signaling complex" evidence=TAS;IPI

GO:0042385 "myosin III complex" evidence=NAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0016459 "myosin complex" evidence=IEA;ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E2RQX5 MYO3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 488 (176.8 bits), Expect = 2.2e-83, Sum P(2) = 2.2e-83
 Identities = 92/185 (49%), Positives = 126/185 (68%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             MSE  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct:   122 MSEPIIAYILHEALLGLQHLHNNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRYR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct:   182 RNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
             I RNPPP L +   WS  + DFI++CL K+ E RP +S+LL+H FIT +   D+ L    
Sbjct:   242 IPRNPPPKLRQPEIWSAEFNDFISKCLTKDYEKRPTVSDLLQHKFITQIEGKDVMLQKQL 301

Query:   181 CQYKD 185
              ++ D
Sbjct:   302 MEFID 306

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F5H0U9 MYO3A "Myosin-IIIa" [Homo sapiens (taxid:9606)]

 Score = 492 (178.3 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 92/176 (52%), Positives = 123/176 (69%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             MSE  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct:   122 MSEPLIAYILHEALMGLQHLHNNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRHR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct:   182 RNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
             I RNPPP L +   WS  + DFI++CL K+ E RP +SELL+H FIT +   D+ L
Sbjct:   242 IPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSELLQHKFITQIEGKDVML 297

GO:0003774 "motor activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8NEV4 MYO3A "Myosin-IIIa" [Homo sapiens (taxid:9606)]

 Score = 492 (178.3 bits), Expect = 2.7e-83, Sum P(2) = 2.7e-83
 Identities = 92/176 (52%), Positives = 123/176 (69%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             MSE  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct:   122 MSEPLIAYILHEALMGLQHLHNNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRHR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct:   182 RNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
             I RNPPP L +   WS  + DFI++CL K+ E RP +SELL+H FIT +   D+ L
Sbjct:   242 IPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSELLQHKFITQIEGKDVML 297

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0000146 "microfilament motor activity" evidence=IDA;IMP

GO:0060002 "plus-end directed microfilament motor activity" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0030175 "filopodium" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0031941 "filamentous actin" evidence=IDA

UNIPROTKB|F1RTW9 MYO3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 476 (172.6 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 90/179 (50%), Positives = 123/179 (68%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             M+E  IA+IL+E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T+ +
Sbjct:   122 MNELIIAYILREALLGLQHLHNNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTWHR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct:   182 RNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAE---CLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
             I RNPPP L +   WS  + DFI+    CL K+ E RP +S+LL+H FIT +   D  L
Sbjct:   242 IPRNPPPKLRQPELWSAEFNDFISNQCRCLTKDYEKRPTVSDLLQHKFITQIEGKDAML 300

GO:0060002 "plus-end directed microfilament motor activity" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E1C7H7 MYO3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 484 (175.4 bits), Expect = 3.2e-82, Sum P(2) = 3.2e-82
 Identities = 96/202 (47%), Positives = 130/202 (64%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             M+E  IA+IL E + G+  LHEN  IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct:   122 MNELIIAYILHEALMGLQHLHENKTIHRDIKGNNILLTTEGGVKLVDFGVSAQLTSTRLR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct:   182 RNTSVGTPFWMAPEVIACEQQLDSSYDARCDAWSLGITAIELGDGDPPLADLHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
             I RNPPP L +   WS  + DFI +CL K+ E RP +S LL+H FI  +   +  L    
Sbjct:   242 IPRNPPPTLQQPELWSSEFNDFINKCLTKDYEKRPTVSSLLQHDFIKQIEGKENVLQRQL 301

Query:   181 CQYKDQELQTMHVEDLAALETI 202
              ++ D   Q M V + A  E I
Sbjct:   302 MEFIDVH-QQMGVTEKARFERI 322

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0060002 "plus-end directed microfilament motor activity" evidence=IEA

RGD|1560083 Myo3a "myosin IIIA" [Rattus norvegicus (taxid:10116)]

 Score = 479 (173.7 bits), Expect = 4.1e-82, Sum P(2) = 4.1e-82
 Identities = 91/185 (49%), Positives = 125/185 (67%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             MSE  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S + ++T  +
Sbjct:   122 MSEPIIAYILHEALMGLQHLHSNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLSSTRHR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  ++HP RALF+
Sbjct:   182 LNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLAELHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
             I RNPPP L +   WS  + DFI++CL K+ E RP +S+LL+H FIT +   D  L    
Sbjct:   242 IPRNPPPKLRQPELWSAEFNDFISKCLTKDYEKRPTVSDLLKHKFITQIEGRDAILQKQL 301

Query:   181 CQYKD 185
              ++ D
Sbjct:   302 MEFID 306

GO:0000146 "microfilament motor activity" evidence=ISO

GO:0001917 "photoreceptor inner segment" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0005516 "calmodulin binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016459 "myosin complex" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA;ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA;ISO

GO:0030175 "filopodium" evidence=ISO

GO:0030898 "actin-dependent ATPase activity" evidence=IEA;ISO

GO:0031941 "filamentous actin" evidence=IEA;ISO

GO:0032426 "stereocilium bundle tip" evidence=IEA;ISO

GO:0032433 "filopodium tip" evidence=IEA;ISO

GO:0043531 "ADP binding" evidence=IEA;ISO

GO:0046777 "protein autophosphorylation" evidence=IEA;ISO

GO:0048839 "inner ear development" evidence=IEA;ISO

GO:0051015 "actin filament binding" evidence=IEA;ISO

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA;ISO

GO:0060002 "plus-end directed microfilament motor activity" evidence=IEA;ISO

UNIPROTKB|E1BP01 MYO3A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 8.7e-82, Sum P(2) = 8.7e-82
 Identities = 91/179 (50%), Positives = 123/179 (68%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             MSE  IA+IL+E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T+ +
Sbjct:   122 MSEPIIAYILREALLGLQHLHNNKTIHRDIKGNNILLTTEGGVKLVDFGVSAQLTSTWHR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R D W+LGITAIELGDG PP  D+HP RALF+
Sbjct:   182 RNTSVGTPFWMAPEVIACEQQLDTTYDARCDTWSLGITAIELGDGDPPLADLHPMRALFK 241

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAE---CLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
             I RNPPP L +   WS  + DFI+    CL K+ E RP +S+LL+H FIT +   D  L
Sbjct:   242 IPRNPPPKLRQPEIWSAEFNDFISNQCRCLTKDYEKRPTVSDLLQHTFITQVEGKDAML 300

GO:0060002 "plus-end directed microfilament motor activity" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C190 MYO3B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 462 (167.7 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 85/176 (48%), Positives = 119/176 (67%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             + E  I++IL   + G+  LH N +IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct:   143 LDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR 202

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + T +G+P WMAPE++ C  +    YD R DVW+LGITAIELGDG PP  DMHP + LF+
Sbjct:   203 RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFK 262

Query:   121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
             I RNPPP L     W + +  FI++CL K+ E RP ++ LLEHPFI  +   D+ L
Sbjct:   263 IPRNPPPTLLHPEKWCRGFNHFISQCLIKDFEKRPTVTHLLEHPFIKQVHGKDMSL 318

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0032426 "stereocilium bundle tip" evidence=IEA

GO:0032433 "filopodium tip" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

ZFIN|ZDB-GENE-041026-4 myo3a "myosin IIIA" [Danio rerio (taxid:7955)]

 Score = 481 (174.4 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
 Identities = 99/222 (44%), Positives = 137/222 (61%)

Query:     1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             M E  IAFIL E + G+  LH N  IHRD++G+N+LLT  G +K+VDFG+S +  NT  +
Sbjct:   122 MEEPIIAFILHEALMGLQHLHVNKTIHRDVKGNNILLTTGGGIKLVDFGVSAQLTNTRLR 181

Query:    61 KKTFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             + T +G+P WMAPE++ C  +++D  YD R DVW+LGITAIELGDG PP  ++HP RALF
Sbjct:   182 RNTSVGTPFWMAPEVIAC-EQQLDSTYDERCDVWSLGITAIELGDGDPPLAELHPMRALF 240

Query:   120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
             +I RNPPP L++   WS  + DFI +CL K+ E RP + +LL+H FI  +   +  L   
Sbjct:   241 KIPRNPPPTLHQPELWSNDFNDFIRKCLIKDFELRPNVLDLLQHVFIKQIVGREKTLQKQ 300

Query:   180 NCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHY 221
               +  D   Q   +E  + L     D+  +  E  H  KN Y
Sbjct:   301 LMELIDLNQQMGIIEKTSLLGKSDRDSDSRH-ERIHTKKNSY 341

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	488
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-96
cd00124	679	cd00124, MYSc, Myosin motor domain	9e-77
smart00242	677	smart00242, MYSc, Myosin	9e-72
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-71
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-68
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	6e-65
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-64
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	2e-63
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	5e-62
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-61
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	3e-61
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-60
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	1e-59
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	2e-57
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	7e-55
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-54
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	9e-51
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-50
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	1e-49
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-48
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-48
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	8e-47
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	2e-45
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	2e-45
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-45
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-45
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	1e-44
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	4e-44
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	1e-43
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-43
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	6e-43
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	9e-43
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-40
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	1e-39
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-39
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-39
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	3e-39
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-39
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-38
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-38
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	7e-38
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	9e-38
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	2e-37
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	3e-37
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	1e-36
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	3e-36
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	3e-36
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	3e-36
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	4e-36
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-35
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	8e-35
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-34
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	7e-34
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	9e-34
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-33
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	1e-32
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-32
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	4e-32
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	1e-31
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	2e-31
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	3e-31
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	3e-31
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	2e-30
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	3e-30
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	4e-30
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-29
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	7e-29
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	9e-29
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	9e-29
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-28
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-28
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-27
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	3e-27
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	6e-27
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-26
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-26
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-26
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	6e-26
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	7e-26
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	8e-26
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	9e-26
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	9e-26
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	7e-25
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	9e-25
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-24
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-24
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-24
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	6e-24
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	3e-23
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-23
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	4e-23
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	7e-23
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	8e-23
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	1e-22
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-22
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	6e-22
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	1e-21
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-21
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-21
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-21
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	4e-21
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	7e-21
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	1e-20
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-20
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-20
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	2e-20
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-20
cd08227	327	cd08227, PK_STRAD_alpha, Pseudokinase domain of ST	3e-20
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	3e-20
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	3e-20
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	6e-20
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	7e-20
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	7e-20
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	8e-20
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	9e-20
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	1e-19
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	1e-19
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	1e-19
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	1e-19
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-19
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-19
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-19
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	5e-19
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	6e-19
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	8e-19
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-18
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-18
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	1e-18
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	2e-18
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	2e-18
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-18
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-18
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	2e-18
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	3e-18
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	4e-18
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	4e-18
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	5e-18
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	6e-18
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	7e-18
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-17
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-17
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	2e-17
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	7e-17
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	8e-17
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-16
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	2e-16
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-16
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	3e-16
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	3e-16
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	6e-16
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-16
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	7e-16
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	8e-16
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-16
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	9e-16
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-15
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-15
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-15
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-15
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	5e-15
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	9e-15
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-14
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-14
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-14
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	1e-14
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-14
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	2e-14
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-14
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	3e-14
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-14
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	3e-14
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	4e-14
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	4e-14
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	4e-14
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-14
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	6e-14
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	6e-14
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	6e-14
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	7e-14
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	7e-14
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	9e-14
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	1e-13
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-13
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-13
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-13
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-13
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-13
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	3e-13
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	4e-13
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	4e-13
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	6e-13
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	6e-13
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-13
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	8e-13
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	9e-13
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	9e-13
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-12
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-12
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	1e-12
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-12
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	2e-12
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-12
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	2e-12
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	2e-12
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	2e-12
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-12
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-12
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-12
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	3e-12
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-12
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	4e-12
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	4e-12
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-12
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	5e-12
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	6e-12
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	6e-12
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	7e-12
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	1e-11
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	1e-11
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-11
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-11
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-11
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-11
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-11
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-11
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-11
smart00750	176	smart00750, KIND, kinase non-catalytic C-lobe doma	2e-11
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	3e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-11
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	4e-11
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	4e-11
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	4e-11
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	5e-11
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	5e-11
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	6e-11
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	7e-11
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	7e-11
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	7e-11
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	8e-11
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	9e-11
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	1e-10
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-10
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-10
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	1e-10
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	1e-10
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	1e-10
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-10
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-10
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-10
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	2e-10
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	3e-10
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	5e-10
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	5e-10
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	5e-10
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	6e-10
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	7e-10
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	8e-10
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	8e-10
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	8e-10
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	9e-10
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-09
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	2e-09
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-09
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-09
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	2e-09
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	3e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-09
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	3e-09
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	3e-09
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-09
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-09
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-09
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	4e-09
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	5e-09
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	5e-09
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	7e-09
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	8e-09
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	8e-09
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	8e-09
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	8e-09
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	9e-09
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	9e-09
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-08
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	1e-08
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	1e-08
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	2e-08
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-08
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	3e-08
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	6e-08
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-08
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	6e-08
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	9e-08
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	1e-07
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-07
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	1e-07
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	1e-07
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	1e-07
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-07
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	5e-07
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	5e-07
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	5e-07
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	1e-06
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-06
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	1e-06
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-06
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	2e-06
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	2e-06
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	2e-06
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	2e-06
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	4e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	7e-06
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	9e-06
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	9e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	3e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	4e-05
PRK14879	211	PRK14879, PRK14879, serine/threonine protein kinas	2e-04
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	3e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	3e-04
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	8e-04
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	0.001
COG3642	204	COG3642, COG3642, Mn2+-dependent serine/threonine	0.004

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score =  290 bits (744), Expect = 9e-96
 Identities = 98/166 (59%), Positives = 126/166 (75%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+IL+E + G+ +LHEN VIHRD++G N+LLTK+ EVK+VDFG+S +  +T  +
Sbjct: 110 LKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGR 169

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C  +    YD R DVW+LGITAIEL DGKPP  DMHP RALF+
Sbjct: 170 RNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFK 229

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I RNPPP L    NWS+ + DFI+ECL KN E RP+M ELLEHPFI
Sbjct: 230 IPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI 275

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  253 bits (648), Expect = 9e-77
 Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 17/301 (5%)

Query: 192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFK 251
            V+DLA+L  ++E  ++  L +R+     Y++ G +L+ +NP   L  YG +   KY+ K
Sbjct: 1   GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGK 60

Query: 252 SRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA-K 310
           SRS+  PH++A+AD AY++M+     Q I+++GE+ AGKT + K ++K+L  L       
Sbjct: 61  SRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTG 120

Query: 311 VGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTG 370
           + EKI     ++ A GNA T  N NS+R   ++++ F  +GK+SGA    Y LEK RV  
Sbjct: 121 IEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSRVV- 179

Query: 371 NRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD-TN 429
           +++P + NFHIFY          E  K  L     YRYL           G  +     +
Sbjct: 180 SQEPGERNFHIFYQLLAGASPE-ERKKLGLKRPESYRYLN--------QGGCNDVDGIDD 230

Query: 430 VAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESSAE---NTAELANPEVAA 485
             +F+E+ + L  + F ++    IF  +LAAIL +G +EF+S        AE+ N EV +
Sbjct: 231 AEEFEELKEALKSLGFSEEEIESIFR-ILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLS 289

Query: 486 N 486
            
Sbjct: 290 K 290

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  240 bits (614), Expect = 9e-72
 Identities = 94/304 (30%), Positives = 159/304 (52%), Gaps = 24/304 (7%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VEDL  L  ++E  ++  L++R+     Y+++G VL+ +NP   L +Y  +   KY+ KS
Sbjct: 8   VEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKS 67

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
           R +  PH++A+AD+AY++M++ +E Q I+++GE+ AGKT + K ++++L  +     +VG
Sbjct: 68  RGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTEVG 127

Query: 313 ---EKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVT 369
              ++I +   ++ A GNA T  N NS+R   ++++ F + GK+ GA    Y LEK RV 
Sbjct: 128 SVEDQILESNPILEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVV 187

Query: 370 ----GNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRET 425
               G R     N+HIFY             +  L     YRYL              + 
Sbjct: 188 SQAKGER-----NYHIFYQLLAGASEE-LKKELGLKSPEDYRYLNQGGCLTV------DG 235

Query: 426 PDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESSAENTAE--LANPE 482
            D +  +F+E    +  + F ++ Q  IF  +LAAIL +G +EFE    + A   + + E
Sbjct: 236 ID-DAEEFKETLNAMRVLGFSEEEQESIFK-ILAAILHLGNIEFEEGRNDNAASTVKDKE 293

Query: 483 VAAN 486
             +N
Sbjct: 294 ELSN 297

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  225 bits (576), Expect = 6e-71
 Identities = 79/165 (47%), Positives = 117/165 (70%), Gaps = 6/165 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  IA++ KE++ G+ +LH N +IHRD++ +N+LLT DGEVK++DFGLS + ++T  +
Sbjct: 95  LTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKAR 154

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T +G+P WMAPE++         YD + D+W+LGITAIEL +GKPP+ ++ P +ALF+
Sbjct: 155 N-TMVGTPYWMAPEVINGKP-----YDYKADIWSLGITAIELAEGKPPYSELPPMKALFK 208

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           I  N PPGL     WS  + DF+ +CL+KNPE RP   +LL+HPF
Sbjct: 209 IATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score =  219 bits (559), Expect = 2e-68
 Identities = 77/166 (46%), Positives = 116/166 (69%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E+ IA IL + + G+ +LH N  IHRD++  N+LL ++G+ K+ DFG+S +  +T  K
Sbjct: 96  LTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAK 155

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++    +E+ GY+N+ D+W+LGITAIE+ +GKPP+ D+HP RA+F 
Sbjct: 156 RNTVIGTPFWMAPEVI----QEI-GYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFM 210

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I   PPP L     WS  + DF+ +CL K+PE RP   +LL+HPFI
Sbjct: 211 IPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score =  210 bits (537), Expect = 6e-65
 Identities = 82/167 (49%), Positives = 117/167 (70%), Gaps = 4/167 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE  IA++ +E + G+ +LHE   IHRD++G+N+LLT+DG+VK+ DFG+S +   T  K
Sbjct: 98  LSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAK 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+F+G+P WMAPE+     K   GYD + D+WALGITAIEL + +PP  D+HP RALF 
Sbjct: 158 RKSFIGTPYWMAPEVAAVERK--GGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFL 215

Query: 121 IVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           I ++  PPP L     WS  + DFI +CL K+P+ RP  ++LL+HPF
Sbjct: 216 ISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score =  210 bits (536), Expect = 1e-64
 Identities = 78/173 (45%), Positives = 119/173 (68%), Gaps = 6/173 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E +IAFIL+E++ G+ +LHE   IHRD++ +N+LL+++G+VK+ DFG+S +  +T  K
Sbjct: 95  LDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSK 154

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE+++       GYD + D+W+LGITAIEL  G+PP  D+HP R LF 
Sbjct: 155 RNTFVGTPFWMAPEVIKQS-----GYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFL 209

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           I +N PP L   + +S+ + DF++ CL K+P+ RP   ELL+H FI    +  
Sbjct: 210 IPKNNPPSLEG-NKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAKKTS 261

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score =  217 bits (554), Expect = 2e-63
 Identities = 106/299 (35%), Positives = 169/299 (56%), Gaps = 9/299 (3%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           ++DLA LE + ED IV++L++R+ +   Y++VGD+L+ +NP   L LY T++   Y  + 
Sbjct: 2   MDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQK 61

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK-V 311
           RS N PHI+A+AD+AYQ ++ + + Q IV++GE+ +GKT S   L++ L  LG+   + +
Sbjct: 62  RSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTL 121

Query: 312 GEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGN 371
            EKI +  +++ A GNA T IN NS+R   Y+++ F  SG + GA    Y LEK RV   
Sbjct: 122 QEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQ 181

Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVA 431
            +  + NFHIFYY Y  +    +L +Y L   +  RYL+ + T          +      
Sbjct: 182 AEG-EKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEAT---RVVQDITSNKFYKD 237

Query: 432 KFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN----TAELANPEVAAN 486
           +F++I Q    I F D ++     +LAAIL +G++EF S A       + ++N     N
Sbjct: 238 QFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALEN 296

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score =  214 bits (546), Expect = 5e-62
 Identities = 96/299 (32%), Positives = 152/299 (50%), Gaps = 18/299 (6%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VEDLAAL  ++E +++  L++R+     Y++ G VL+ +NP   L +Y  +   +Y+ K 
Sbjct: 1   VEDLAALTQLNETSVLHNLKKRYTGDLIYTYSGLVLISVNPYKRLPIYTEEPIGEYRGKR 60

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
           R +  PHI+A+AD AY+ M+  +E Q IV++GE+ AGKT + K L+++L  +        
Sbjct: 61  RGELPPHIFALADRAYRHMLRDKENQCIVISGESGAGKTENTKKLMQYLASVSGSTPSAV 120

Query: 313 EKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV 368
             +E  +     ++ A GNA T  N NS+R   ++++ F ++G + G     Y LEK RV
Sbjct: 121 GPLEDQILQSNPILEAFGNAKTLRNNNSSRFGKFIEIQFDATGSIVGGNIETYLLEKSRV 180

Query: 369 TGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT 428
              + P + NFHIFY       A  E  +  L   + Y YL           G    P  
Sbjct: 181 V-YQTPGERNFHIFYQLLAGASAQ-EKKELGLKDPKDYAYLSQS--------GCYTVPGI 230

Query: 429 N-VAKFQEIYQNLIDIEFDDI-QMEIFSNVLAAILLIGEVEFESS-AENTAELANPEVA 484
           +   +F++    L  I F D  Q  IF  VLAAIL +G ++F+    E  A + + E  
Sbjct: 231 DDAEEFKDTRSALKIIGFTDEEQRSIFR-VLAAILHLGNIKFKQDQNEEQAVVEDTEEL 288

Length = 679

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score =  202 bits (516), Expect = 1e-61
 Identities = 73/172 (42%), Positives = 118/172 (68%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I ++ ++++  + FLH + VIHRDL+  N+LLT DG+VK+ DFG+S +  +T  K
Sbjct: 100 LTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK 159

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C   + + YD + D+W+LGIT IEL   +PP  +++P R L +
Sbjct: 160 RDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLK 219

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           I+++ PP L + S WS  + DF+  CL K+P+ RP  +ELL+HPF++   +N
Sbjct: 220 ILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQSDN 271

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score =  201 bits (512), Expect = 3e-61
 Identities = 88/166 (53%), Positives = 118/166 (71%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA+IL E + G+  LH N  IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct: 121 MEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR 180

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++ C  +    YD R DVW+LGITAIELGDG PP  D+HP RALF+
Sbjct: 181 RNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFK 240

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I RNPPP L++   WS  + DFI +CL K+ E RP +S+LL+H FI
Sbjct: 241 IPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI 286

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score =  199 bits (509), Expect = 1e-60
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 5/167 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E  IA++ +E++ G+ +LH  +VIHRD++  N+LL+KDG VK+ DFG + +      K
Sbjct: 113 MNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSK 172

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + + +G+P WMAPE+++        Y  ++D+W+LGI  IE+ +G+PP+    P RALF 
Sbjct: 173 RNSVVGTPYWMAPEVIK-RKD----YGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFL 227

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I     P L     WS  + DF+ +CL K+PE RP   ELL+HPF+ 
Sbjct: 228 ITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score =  197 bits (502), Expect = 1e-59
 Identities = 86/166 (51%), Positives = 116/166 (69%), Gaps = 1/166 (0%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA+I +EI+ G+  LH + VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 118 LKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 177

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD R D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 178 RNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFL 237

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I RNPPP L ++  WS+ ++DFI  CL KN   RP   +LL+HPFI
Sbjct: 238 IPRNPPPKL-KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI 282

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score =  192 bits (488), Expect = 2e-57
 Identities = 83/166 (50%), Positives = 115/166 (69%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I++IL   + G+  LH N +IHRD++G+N+LLT +G VK+VDFG+S +  +T  +
Sbjct: 125 LDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR 184

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++ C  +    YD R DVW+LGITAIELGDG PP  DMHP + LF+
Sbjct: 185 RNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFK 244

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I RNPPP L     W + +  FI++CL K+ E RP ++ LLEHPFI
Sbjct: 245 IPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFI 290

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score =  184 bits (468), Expect = 7e-55
 Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 1/166 (0%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+I +EI+ G+  LH++ VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 108 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 167

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD + D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 168 RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL 227

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I RNP P L ++  WS+ +  FI  CL KN   RP   +L++HPFI
Sbjct: 228 IPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI 272

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  182 bits (464), Expect = 3e-54
 Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 7/167 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE    F L++I++ + +LH   ++HRDL+  N+LL +DG VK+ DFGL+R+     +K
Sbjct: 94  LSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPG-EK 152

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             TF+G+P +MAPE++        GY   +D+W+LG+   EL  GKPPF        LF+
Sbjct: 153 LTTFVGTPEYMAPEVLLG-----KGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFK 207

Query: 121 IVRNPPPGLYRAS-NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +  P P       + S    D I + L K+PE R    E L+HPF 
Sbjct: 208 KIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score =  174 bits (442), Expect = 9e-51
 Identities = 70/172 (40%), Positives = 114/172 (66%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  I ++++  + +LH   +IHRDL+  NVLLT DG++K+ DFG+S +   T  +
Sbjct: 107 LTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQR 166

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + D+W+LGIT IE+   +PP  +++P R L +
Sbjct: 167 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLK 226

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           I ++ PP L + S WS  + DF+   L+K+PE RP  ++LLEHPF++S+  N
Sbjct: 227 IAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSN 278

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score =  172 bits (438), Expect = 2e-50
 Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 11/171 (6%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS----RETANTF 58
           E  IA +LKE++ G+ +LH N  IHRD++  N+LL +DG VKI DFG+S         T 
Sbjct: 101 EAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR 160

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
             +KTF+G+P WMAPE+M    ++V GYD + D+W+ GITAIEL  G  P+    P + L
Sbjct: 161 KVRKTFVGTPCWMAPEVM----EQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVL 216

Query: 119 FQIVRNPPPGL-YRASN--WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
              ++N PP L   A    +S+ +   I+ CL+K+P  RP   ELL+H F 
Sbjct: 217 MLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score =  170 bits (433), Expect = 1e-49
 Identities = 69/167 (41%), Positives = 111/167 (66%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + K+ +  + +LHEN +IHRDL+  N+L T DG++K+ DFG+S +   T  +
Sbjct: 100 LTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR 159

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + DVW+LGIT IE+   +PP  +++P R L +
Sbjct: 160 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLK 219

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I ++ PP L + S WS  + DF+ +CLEKN + R   ++LL+HPF+T
Sbjct: 220 IAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVT 266

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score =  168 bits (426), Expect = 1e-48
 Identities = 79/182 (43%), Positives = 118/182 (64%), Gaps = 7/182 (3%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E  IA +LKEI+ G+ +LH    IHRD++ +NVLL++ G+VK+ DFG++ +  +T  K+ 
Sbjct: 100 EFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF+G+P WMAPE++     +   YD++ D+W+LGITAIEL  G+PP  DMHP R LF I 
Sbjct: 160 TFVGTPFWMAPEVI-----QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIP 214

Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQ 182
           +N PP L     +S+ + +FI  CL K+P  RP   ELL+H FI    +   +L+ +  +
Sbjct: 215 KNNPPTL--TGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKNAKKTSYLTELIDR 272

Query: 183 YK 184
           +K
Sbjct: 273 FK 274

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score =  167 bits (425), Expect = 2e-48
 Identities = 79/184 (42%), Positives = 119/184 (64%), Gaps = 7/184 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E +IA IL+EI+ G+ +LH    IHRD++ +NVLL++ G+VK+ DFG++ +  +T  K
Sbjct: 98  LEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE+++        YD + D+W+LGITAIEL  G+PP  D+HP R LF 
Sbjct: 158 RNTFVGTPFWMAPEVIK-----QSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFL 212

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I +N PP L     +S+ + +F+  CL K+P  RP   ELL+H FIT   +    L+ + 
Sbjct: 213 IPKNSPPTL--EGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKTSFLTELI 270

Query: 181 CQYK 184
            +YK
Sbjct: 271 DRYK 274

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score =  162 bits (412), Expect = 8e-47
 Identities = 73/167 (43%), Positives = 108/167 (64%), Gaps = 4/167 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE  IA++ +E + G+ +LH    +HRD++G+N+LLT +G VK+ DFG+S +   T  K
Sbjct: 103 LSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAK 162

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+F+G+P WMAPE+     K   GY+   D+WA+GITAIEL + +PP  D+HP RALF 
Sbjct: 163 RKSFIGTPYWMAPEVAAVERK--GGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFL 220

Query: 121 IVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           + ++   PP L     WS  +  F+   L KNP+ RP   +LL+HPF
Sbjct: 221 MTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score =  159 bits (404), Expect = 2e-45
 Identities = 78/184 (42%), Positives = 118/184 (64%), Gaps = 7/184 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA IL+EI+ G+ +LH    IHRD++ +NVLL++ GEVK+ DFG++ +  +T  K
Sbjct: 98  LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE+++        YD++ D+W+LGITAIEL  G+PP  ++HP + LF 
Sbjct: 158 RNTFVGTPFWMAPEVIK-----QSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFL 212

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I +N PP L    N+S+   +F+  CL K P  RP   ELL+H FI    +   +L+ + 
Sbjct: 213 IPKNNPPTL--EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRFAKKTSYLTELI 270

Query: 181 CQYK 184
            +YK
Sbjct: 271 DRYK 274

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score =  170 bits (432), Expect = 2e-45
 Identities = 93/308 (30%), Positives = 160/308 (51%), Gaps = 19/308 (6%)

Query: 184 KDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTK 243
           + +  +   V+DL  L  ++E  ++  LE+R+N+   Y++ G VL+ +NP   L +Y   
Sbjct: 59  RIKLPKFDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDD 118

Query: 244 YHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIF 303
               Y  K+R + EPH++A+A+ AY++++  +E Q I+++GE+ AGKT + K ++++L  
Sbjct: 119 IIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLAS 178

Query: 304 LGQGAAKVGEKIEKCV---N-VIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFW 359
           +   +      IEK +   N ++ A GNA T  N NS+R   Y+++ F  +G++ GA   
Sbjct: 179 VTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIE 238

Query: 360 LYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGEL--DKYFLSPGRKYRYLRADVTDDK 417
            Y LEK RV  +++  + N+HIFY     +    E       L   + Y YL +    DK
Sbjct: 239 TYLLEKSRVV-HQNKNERNYHIFYQL---LAGDPEELKKLLLLQNPKDYIYL-SQGGCDK 293

Query: 418 LPKGPRETPDTNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTA 476
           +  G  +  +     F+     L  I  D + Q +IF  +LAAIL IG +EF+      A
Sbjct: 294 ID-GIDDAKE-----FKITLDALKTIGIDEEEQDQIF-KILAAILHIGNIEFKEDRNGAA 346

Query: 477 ELANPEVA 484
             ++  V 
Sbjct: 347 IFSDNSVL 354

Length = 1463

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  158 bits (402), Expect = 3e-45
 Identities = 59/161 (36%), Positives = 98/161 (60%), Gaps = 11/161 (6%)

Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLGS 67
            ++I+ G+ +LH N ++HRD++G+N+L+  DG VK+ DFG ++      T +   +  G+
Sbjct: 107 TRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVRNP- 125
           P WMAPE++R        Y    D+W+LG T IE+  GKPP+ ++  P  AL++I  +  
Sbjct: 167 PYWMAPEVIRGE-----EYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGE 221

Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           PP +    + S+   DF+ +CL ++P+ RP   ELL+HPF+
Sbjct: 222 PPEI--PEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score =  158 bits (401), Expect = 4e-45
 Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 7/165 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E  +A  + +++ G+ +LHE  VIHRD++ +N+L TKDG VK+ DFG++ +  +     
Sbjct: 97  PESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDD 156

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            + +G+P WMAPE++     E+ G     D+W+LG T IEL  G PP+ D++P  ALF+I
Sbjct: 157 ASVVGTPYWMAPEVI-----EMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRI 211

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           V++  P L      S    DF+ +C +K+P  RP   +LL+HP+I
Sbjct: 212 VQDDHPPL--PEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score =  157 bits (398), Expect = 1e-44
 Identities = 70/167 (41%), Positives = 109/167 (65%), Gaps = 4/167 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE  IA++ +E + G+ +LH    +HRD++G+N+LLT +G+VK+ DFG++ +   T  K
Sbjct: 103 LSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAK 162

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+F+G+P WMAPE+     ++  GY+   D+WA+GITAIEL + +PP  D+HP RALF 
Sbjct: 163 RKSFIGTPYWMAPEVAAV--EKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFL 220

Query: 121 IVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           + ++   PP L   + WS  + +F+   L KNP+ RP    LL H F
Sbjct: 221 MSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score =  157 bits (398), Expect = 4e-44
 Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 14/178 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA I    + G+ +LH +  IHRD++  N+LLT+ G VK+ DFG    +A+    
Sbjct: 112 LQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFG----SASLVSP 167

Query: 61  KKTFLGSPSWMAPEI---MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +F+G+P WMAPE+   M  G      YD ++DVW+LGIT IEL + KPP  +M+   A
Sbjct: 168 ANSFVGTPYWMAPEVILAMDEGQ-----YDGKVDVWSLGITCIELAERKPPLFNMNAMSA 222

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT-SLPENDL 174
           L+ I +N  P L  +++WS ++ +F+  CL+K P+ RP   ELL+H F+    P   +
Sbjct: 223 LYHIAQNDSPTL-SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRERPPTVI 279

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score =  163 bits (414), Expect = 1e-43
 Identities = 104/316 (32%), Positives = 153/316 (48%), Gaps = 50/316 (15%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           V+DL  L  ISE+ IV+ L++R  +   Y+++G VL+ +NP   L +Y  +    YK KS
Sbjct: 2   VDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKS 61

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKV- 311
           R +  PHIYA+AD+AY+ M    E Q ++++GE+ AGKT + K +++++       A V 
Sbjct: 62  RYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYI-------AAVS 114

Query: 312 --GEKIEKCVNVI-------HAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQ 362
             G+K+E+  +VI        A GNA T  N NS+R   YM++ F   G   G     Y 
Sbjct: 115 GGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYL 174

Query: 363 LEKWRVT----GNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYL------RAD 412
           LEK RV     G R     NFHIFY           L +  L     Y YL        D
Sbjct: 175 LEKSRVVSQNKGER-----NFHIFYQLLAGASEQ-LLRELGLQKPEYYYYLNQSQCYTVD 228

Query: 413 VTDDKLPKGPRETPDTNVAKFQEIYQ--NLIDIEFDDIQMEIFSNVLAAILLIGEVEFES 470
             DDK               F+E      +I    +D Q EIF  ++AAIL +G V+F  
Sbjct: 229 GIDDK-------------KDFKETQNAMKVIGF-SEDEQDEIFR-IVAAILHLGNVQFAE 273

Query: 471 SAENTAELANPEVAAN 486
           + +  A +++ +V   
Sbjct: 274 NGDGAAVISDKDVLDF 289

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score =  154 bits (390), Expect = 1e-43
 Identities = 65/167 (38%), Positives = 102/167 (61%), Gaps = 12/167 (7%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E  I    ++I+ G+ +LH+ + +HRD++G+N+L+  +G VK+ DFG++++    F   K
Sbjct: 101 EPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVV-EFSFAK 159

Query: 63  TFLGSPSWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           +F GSP WMAPE I + G     GY    D+W+LG T +E+  GKPP+  +    A+F+I
Sbjct: 160 SFKGSPYWMAPEVIAQQG-----GYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKI 214

Query: 122 VRNP--PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            R+   PP      + S    DFI +CL+++P  RP  +ELLEHPF+
Sbjct: 215 GRSKELPP---IPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV 258

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score =  152 bits (387), Expect = 6e-43
 Identities = 60/168 (35%), Positives = 106/168 (63%), Gaps = 5/168 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E++I+ I++E++  + ++H+  VIHRD++ +N+L+T  G VK+ DFG++        K
Sbjct: 98  IAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSK 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++     E   YD + D+W+LGIT  E+  G PP+ D+   RA+  
Sbjct: 158 RSTFVGTPYWMAPEVIT----EGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMML 213

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I ++ PP L   + +S+   +F+A CL++ P+ R    ELL+  +I +
Sbjct: 214 IPKSKPPRL-EDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKA 260

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  152 bits (385), Expect = 9e-43
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE     I  +I+ G+ +LH N +IHRDL+  N+LL ++G VKI DFGL+++   +   
Sbjct: 95  LSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSS 154

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             TF+G+P +MAPE++  G    +GY  ++DVW+LG+   EL  GKPPF          Q
Sbjct: 155 LTTFVGTPWYMAPEVLLGG----NGYGPKVDVWSLGVILYELLTGKPPFSG-ENILDQLQ 209

Query: 121 IVRNPPPGLYRASNWSQHYV-----DFIAECLEKNPEHRPYMSELLEHPFI 166
           ++R                      D I +CL K+P  RP   E+L+HP+ 
Sbjct: 210 LIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score =  147 bits (373), Expect = 1e-40
 Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 112 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 171

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 172 RSTMVGTPYWMAPEVV-----TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL 226

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CLE + E R    ELL+HPF+
Sbjct: 227 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  151 bits (384), Expect = 1e-39
 Identities = 90/293 (30%), Positives = 151/293 (51%), Gaps = 29/293 (9%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL-NLYGTKYHFKYKFK 251
           V+D+  L  + E  ++Q L+ R+     Y++ G++L+ +NP   L +LY      +YK  
Sbjct: 3   VDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGA 62

Query: 252 SRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKV 311
           +  +  PH++A+AD+AY+ M++  ++Q I+++GE+ AGKT + K L+++L ++G  A   
Sbjct: 63  ALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVE 122

Query: 312 GEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           G  +E+ V     V+ A GNA T  N NS+R   ++++ F   G++SGA    Y LE+ R
Sbjct: 123 GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSR 182

Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLR-------ADVTDDKLPK 420
           V    DP + N+H FY    A     ++ KY L   +++ YL          V D +   
Sbjct: 183 VCQISDP-ERNYHCFYQLCAAPPE--DVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239

Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAE 473
             R   D             + I  ++ Q  IF  V+AAIL +G +EF    E
Sbjct: 240 ATRRAMDV------------VGISEEE-QDAIFR-VVAAILHLGNIEFAKGEE 278

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score =  143 bits (362), Expect = 2e-39
 Identities = 68/171 (39%), Positives = 105/171 (61%), Gaps = 10/171 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E  +A+I ++I+ G+ +LH + H+IHRD++ SN+L+   GEVKI DFG+S+   NT D
Sbjct: 96  IPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLD 155

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTR 116
           +  TF+G+ ++M+PE ++    E   Y    D+W+LG+T +E   GK PF          
Sbjct: 156 QCNTFVGTVTYMSPERIQG---ESYSYAA--DIWSLGLTLLECALGKFPFLPPGQPSFFE 210

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            +  I   PPP L  A  +S  + DFI+ CL+K+P+ RP  +ELL+HPFI 
Sbjct: 211 LMQAICDGPPPSL-PAEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIK 260

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score =  142 bits (361), Expect = 3e-39
 Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 14/173 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E+ +  I   ++ G+ +LHE H +IHRD++ SN+L+   G++K+ DFG+S +  N   
Sbjct: 97  IPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVN--S 154

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPT-- 115
             KTF+G+ S+MAPE ++        Y  + D+W+LG++ IEL  G+ P+  E+  P   
Sbjct: 155 LAKTFVGTSSYMAPERIQGND-----YSVKSDIWSLGLSLIELATGRFPYPPENDPPDGI 209

Query: 116 -RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
              L  IV  PPP L  +  +S  + DF+  CL K+P  RP   ELLEHPFI 
Sbjct: 210 FELLQYIVNEPPPRL-PSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIK 261

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  150 bits (381), Expect = 3e-39
 Identities = 98/304 (32%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 189 QTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKY 248
           Q    +DL  L  ++E  +++ L  R    + Y++ G +L+ +NP   L +Y  KY   Y
Sbjct: 5   QQREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLY 64

Query: 249 KFKSRSDN-EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ- 306
           + + R     PHI+A+AD AY +M+  +  Q IV++GE+ +GKT S   L+ HL  L Q 
Sbjct: 65  ENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQK 124

Query: 307 GAAKVG--EKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLE 364
           G A  G  + I     V+ A GNA T  N NS+R   ++QV +  +G + GA+   Y LE
Sbjct: 125 GYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLE 184

Query: 365 KWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRE 424
           K R+  +++  + N+H+FYY         E  + FL     Y YL     + K+  G  E
Sbjct: 185 KSRIV-SQEKDERNYHVFYYLLLGASEE-ERKQEFLLKQPDYFYLNQH--NLKIEDGEDE 240

Query: 425 TPDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESSA----ENTAELA 479
             +     F+ + Q +  + F    Q +IF  VL+A+LL+G V ++  A    + + E+ 
Sbjct: 241 KHE-----FERLKQAMEMVGFLAATQKQIF-AVLSAVLLLGNVTYKKRATYHRDESLEVG 294

Query: 480 NPEV 483
           NPEV
Sbjct: 295 NPEV 298

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score =  143 bits (362), Expect = 4e-39
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  + FLH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 112 MNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPR 171

Query: 61  KKTFLGSPSWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           +K+ +G+P WMAPE I R        Y   +D+W+LGI  IE+ DG+PP+ +  P +A+ 
Sbjct: 172 RKSLVGTPYWMAPEVISR------LPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMK 225

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +I  N PP L      S     F+   L ++P  R   +ELL HPF+
Sbjct: 226 RIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score =  141 bits (357), Expect = 2e-38
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 112 MDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 171

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 172 RSTMVGTPYWMAPEVV-----TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL 226

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CLE + + R    ELL+HPF+
Sbjct: 227 IATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score =  141 bits (356), Expect = 2e-38
 Identities = 68/166 (40%), Positives = 97/166 (58%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  NVLL  DG VK+ DFG   +      K
Sbjct: 112 MDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK 171

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 172 RSTMVGTPYWMAPEVV-----TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL 226

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CLE + E R    ELL+HPF+
Sbjct: 227 IATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score =  146 bits (371), Expect = 7e-38
 Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 36/311 (11%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + +NP   L +Y  +    Y+ K 
Sbjct: 7   VEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKK 66

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
           R +  PHI+A+AD+AY+ M+   E Q I++ GE+ AGKT + K ++++L  +   + K  
Sbjct: 67  REEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKK 126

Query: 313 EK------IEKCV---NVI-HAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA-IFWLY 361
           +       +E  +   N I  A GNA T  N NS+R   ++++ FG++GK++GA I   Y
Sbjct: 127 QSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIET-Y 185

Query: 362 QLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLS-PGRKYRYLRADVT-----D 415
            LEK RV   +   + N+HIFY      +         L+     YRYL          D
Sbjct: 186 LLEKSRVV-FQASGERNYHIFYQLLSGAD-PELKSMLLLTGNPNDYRYLSQGELTIPGVD 243

Query: 416 DKLPKGPRETPDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFES-SAE 473
           D               +F+   +    + F D+ +  IF  ++AAIL +G ++F+    E
Sbjct: 244 D-------------AEEFKLTDEAFDILGFSDEEKNSIF-KIVAAILHLGNIKFKQRQRE 289

Query: 474 NTAELANPEVA 484
             AEL   E A
Sbjct: 290 EQAELDGTEEA 300

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  138 bits (350), Expect = 9e-38
 Identities = 52/166 (31%), Positives = 95/166 (57%), Gaps = 7/166 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E+ I     ++   + +LH   ++HRD++  N+ LT +G VK+ DFG+S+  ++T D 
Sbjct: 100 FPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDL 159

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KT +G+P +++PE+  C +K    Y+ + D+W+LG    EL   K PFE  +      +
Sbjct: 160 AKTVVGTPYYLSPEL--CQNK---PYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALK 214

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I++   P +   S +S    + ++  L+K+PE RP ++++L+ PFI
Sbjct: 215 ILKGQYPPI--PSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score =  138 bits (349), Expect = 2e-37
 Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 7/173 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E+ IA + + ++  + +LH   VIHRD++  ++LLT DG VK+ DFG   + +    K
Sbjct: 114 LNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK 173

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+ +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+    P +A+ +
Sbjct: 174 RKSLVGTPYWMAPEVI-----SRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKR 228

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI--TSLPE 171
           +  +PPP L  A   S    DF+   L + P+ R    ELL+HPF+  T LPE
Sbjct: 229 LRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTGLPE 281

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score =  139 bits (350), Expect = 3e-37
 Identities = 66/166 (39%), Positives = 106/166 (63%), Gaps = 7/166 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA I    + G+ +LH +++IHRD++  N+LLT+ G+VK+ DFG    +A+    
Sbjct: 122 LQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFG----SASIASP 177

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             +F+G+P WMAPE++     +   YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 178 ANSFVGTPYWMAPEVILA--MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 235

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +N  P L +++ WS ++ +F+  CL+K P+ RP   ELL+H F+
Sbjct: 236 IAQNESPTL-QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFV 280

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score =  136 bits (344), Expect = 1e-36
 Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 5/169 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E  +  I   I+  + +LH    VIHRD++ SNVL+ ++G+VK+ DFG+S    ++  
Sbjct: 100 IPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA 159

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRAL 118
           K     G   +MAPE +        GYD + DVW+LGIT IEL  G+ P++    P + L
Sbjct: 160 KTID-AGCKPYMAPERIN-PELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQL 217

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            Q+V  P P L  A  +S  + DF+ +CL+KN + RP   ELL+HPF  
Sbjct: 218 KQVVEEPSPQL-PAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFE 265

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  142 bits (359), Expect = 3e-36
 Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 30/303 (9%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
            +DL  L  + E  ++  L  R   K  Y++ G VL+ INP   L +YG +    Y  + 
Sbjct: 2   KDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQR 61

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
           + + +PHI+A+A+ AY+ M   E+ Q I+++GE+ AGKT S K+++++   +G   ++  
Sbjct: 62  KGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREV 121

Query: 313 EK--IEKCV---NVI-HAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKW 366
            +  +E+ V   N I  A GNA T  N NS+R   Y+Q+ F   G++ GA    Y LEK 
Sbjct: 122 SETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYLLEKS 181

Query: 367 RVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYL------RADVTDDKLPK 420
           RV   + P + N+HIFY       +  EL +  L    K+ YL        +  DD    
Sbjct: 182 RVV-FQAPGERNYHIFYQLCAGAPSQ-ELKELHLGHADKFNYLNQGGAPTIEGVDDA--- 236

Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELA 479
                       F    Q L  +    + QM+IF  +LAA+L +G +E E++  N +   
Sbjct: 237 ----------EDFNATVQALTLLGISEEQQMDIFK-LLAALLHLGNIEIEAT-RNDSSSI 284

Query: 480 NPE 482
           +P+
Sbjct: 285 SPK 287

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score =  135 bits (342), Expect = 3e-36
 Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 7/166 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA +    + G+ +LH +++IHRD++  N+LL++ G VK+ DFG    +A+    
Sbjct: 112 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFG----SASIMAP 167

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              F+G+P WMAPE++     +   YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 168 ANXFVGTPYWMAPEVILA--MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 225

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +N  P L ++ +WS+++ +F+  CL+K P+ RP    LL+H F+
Sbjct: 226 IAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 270

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score =  135 bits (342), Expect = 3e-36
 Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 7/166 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA I    + G+ +LH +++IHRD++  N+LLT+ G+VK+ DFG    +A+    
Sbjct: 118 LQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFG----SASKSSP 173

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             +F+G+P WMAPE++     +   YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 174 ANSFVGTPYWMAPEVILA--MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 231

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +N  P L +++ W+  +  F+  CL+K P+ RP  +ELL H F+
Sbjct: 232 IAQNDSPTL-QSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFV 276

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score =  135 bits (340), Expect = 4e-36
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 173 RSTMVGTPYWMAPEVV-----TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CL+ + E R    ELL+H F+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score =  132 bits (333), Expect = 3e-35
 Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 8/169 (4%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ + F  ++++ G+ +LH   ++HRDL+  N+L+  DG  KI DFG+S+++ + +D  +
Sbjct: 107 EQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQ 166

Query: 63  --TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             +  GS  WMAPE++    +   GY  ++D+W+LG   +E+  G+ P+ D     A+F+
Sbjct: 167 NMSMQGSVFWMAPEVIHSYSQ---GYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFK 223

Query: 121 I---VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +      PP     + N S   +DF+  C   NP++RP   ELL+HPFI
Sbjct: 224 LGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI 272

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score =  137 bits (347), Expect = 8e-35
 Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 39/308 (12%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           V+DL  L  ++E +++  L+ R++    Y+  G VL+ +NP   + LYG  Y   Y+ KS
Sbjct: 10  VDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS 69

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
                PH+YA+AD+AY +MM  E  Q I+++GE+ AGKT + K  +++L  LG G + + 
Sbjct: 70  NDS--PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLG-GGSGIE 126

Query: 313 EKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV---- 368
            +I +   ++ A GNA T  N NS+R    +++ F  +GK+SGA    + LEK RV    
Sbjct: 127 YEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCA 186

Query: 369 TGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLR-------ADVTDDKLPKG 421
            G R     ++HIFY        A + +K  L    +Y+YL+         V D +    
Sbjct: 187 RGER-----SYHIFYQLCAGAPPALK-EKLNLKSASEYKYLKQSCCYSINGVDDAQ---- 236

Query: 422 PRETPDTNVAKFQEIYQ--NLIDIEFDDIQMEIFSNVLAAILLIGEVEFES-SAENTAEL 478
                     +F  + +  +++ I  +D Q  +F+ +LAA+L +G V F     EN  E 
Sbjct: 237 ----------RFHTLVEALDIVHISKED-QENVFA-MLAAVLWLGNVSFTVIDNENHVEP 284

Query: 479 ANPEVAAN 486
              E  + 
Sbjct: 285 VADEALST 292

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score =  130 bits (329), Expect = 2e-34
 Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 16/174 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E+ +  I + ++ G+ +LH   +IHRD++ SN+LLT+ G+VK+ DFG+S E  N+    
Sbjct: 103 GEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA-- 160

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE-----DMHPTR 116
            TF G+  +MAPE ++        Y    DVW+LG+T +E+   + PF       + P  
Sbjct: 161 GTFTGTSFYMAPERIQGKP-----YSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIE 215

Query: 117 ALFQIVRNPPPGLY----RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            L  IV  P P L         WS+ + DFI +CLEK+P  RP   ++LEHP+I
Sbjct: 216 LLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWI 269

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score =  128 bits (322), Expect = 7e-34
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 15/164 (9%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA------NTFDKKKTF 64
           K+I+ G+ +LH N V+HRD++G+NV+L  +G +K++DFG +R  A         +  K+ 
Sbjct: 109 KQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSM 168

Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI--V 122
            G+P WMAPE++        GY  + D+W++G T  E+  GKPP   M    A+F I   
Sbjct: 169 HGTPYWMAPEVIN-----ESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAH 223

Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           R   P L    ++S   +DF+  CL ++   RP   +LL H F+
Sbjct: 224 RGLMPRL--PDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL 265

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  127 bits (321), Expect = 9e-34
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 17/171 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE+   F   EI+  + +LH   +I+RDL+  N+LL  DG +K+ DFGL++E ++   +
Sbjct: 90  FSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR 149

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             TF G+P ++APE++        GY   +D W+LG+   E+  GKPPF      + +++
Sbjct: 150 TNTFCGTPEYLAPEVLLGK-----GYGKAVDWWSLGVLLYEMLTGKPPFYA-EDRKEIYE 203

Query: 121 -IVRNPP--PGLYRASNWSQHYVDFIAECLEKNPEHR---PYMSELLEHPF 165
            I+++P   P        S    D I+  L+K+P  R       E+  HPF
Sbjct: 204 KILKDPLRFP-----EFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPF 249

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score =  125 bits (316), Expect = 5e-33
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 15/162 (9%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-----TANTFDKKKTFL 65
           ++I+ G+ +LH N ++HRD++G+N+L    G VK+ DFG S+      ++ T    K+  
Sbjct: 111 RQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTG--MKSVT 168

Query: 66  GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           G+P WM+PE++  G     GY  + DVW++G T +E+   KPP+ +     A+F+I   P
Sbjct: 169 GTPYWMSPEVIS-GE----GYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQP 223

Query: 126 P-PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             P L   S+ S    +F+     +N + RP   ELL H F+
Sbjct: 224 TNPQL--PSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score =  125 bits (315), Expect = 1e-32
 Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 5/167 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 113 MNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 172

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+ +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 173 RKSLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 227

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 228 IRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  122 bits (308), Expect = 3e-32
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 39/165 (23%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFD 59
           +SE  I  IL +I+ G+ +LH N +IHRDL+  N+LL  D G+VK+ DFGLS+   +   
Sbjct: 89  LSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS 148

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             KT +G+P++MAPE++         Y  + D+W+LG+   EL                 
Sbjct: 149 LLKTIVGTPAYMAPEVLLGKGY----YSEKSDIWSLGVILYEL----------------- 187

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP 164
                                D I + L+K+PE RP   E+LEH 
Sbjct: 188 -----------------PELKDLIRKMLQKDPEKRPSAKEILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score =  124 bits (312), Expect = 4e-32
 Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 9/180 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           E  +  I   ++ G+ FL E H +IHRD++ +NVL+  +G+VK+ DFG+S     +    
Sbjct: 101 EDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASL--A 158

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KT +G  S+MAPE ++ G    +  Y  + DVW+LG++ +E+  G+ P+          Q
Sbjct: 159 KTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQ 218

Query: 121 ---IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
              IV   PP L   S +S    DF+A+CL K P  RP  ++LLEHP++      D+ ++
Sbjct: 219 LSAIVDGDPPTL--PSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKNADVDMA 276

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score =  122 bits (308), Expect = 1e-31
 Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  + +LH   VIHRD++  ++LLT DG +K+ DFG   + +    K
Sbjct: 115 MNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPK 174

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+ +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+ +
Sbjct: 175 RKSLVGTPYWMAPEVI-----SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRR 229

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N PP +  +   S     F+   L + P  R    ELL+HPF+
Sbjct: 230 IRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFL 275

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score =  121 bits (305), Expect = 2e-31
 Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 16/171 (9%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDKK 61
           EQ I F  K+I+ G+ +LH+N ++HRD++G NVL+ T  G VKI DFG S+  A      
Sbjct: 107 EQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCT 166

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQ 120
           +TF G+  +MAPE++  G +   GY    D+W+LG T +E+  GKPPF ++  P  A+F+
Sbjct: 167 ETFTGTLQYMAPEVIDKGPR---GYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFK 223

Query: 121 IVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +      G+++       + S    +FI  C E +P+ R    +LL+ PF+
Sbjct: 224 V------GMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL 268

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  127 bits (320), Expect = 3e-31
 Identities = 96/300 (32%), Positives = 145/300 (48%), Gaps = 27/300 (9%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+  L  + E  I++ L  R+  K  Y++ G +L+ +NP   L +Y       YK KS
Sbjct: 2   VEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKS 61

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
             +  PHI+A++D+AY +M   ++ Q I+++GE+ AGKT S K +L++L  +    + + 
Sbjct: 62  IGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIE 121

Query: 313 EKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR-VTGN 371
           ++I +   ++ A GNA T  N NS+R   Y+ + F   G + GA    Y LEK R V   
Sbjct: 122 QQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQA 181

Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYL------RADVTDDKLPKGPRET 425
           RD  + N+HIFY     +    E ++  L     Y YL        +  DD         
Sbjct: 182 RD--ERNYHIFYCMLAGLSTD-EKERLKLGEASDYHYLAQGGCITCEGRDD--------- 229

Query: 426 PDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVA 484
                  F +I   +  + F D    EIF  +LAAIL IG + FE  A     LA  EV 
Sbjct: 230 ----AKDFADIRSAMKVLMFTDQEIWEIFK-LLAAILHIGNLRFE--ATEVDNLAACEVD 282

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score =  127 bits (320), Expect = 3e-31
 Identities = 82/301 (27%), Positives = 149/301 (49%), Gaps = 28/301 (9%)

Query: 192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL-NLYGTKYHFKYKF 250
            VED  +L  ++E  ++  +  R++    Y++V ++L+ +NP   +  LY +    KY+ 
Sbjct: 5   DVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQG 64

Query: 251 KSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK 310
           KS     PH++A+AD AY+DM   + +Q I+++GE+ AGKT + K +L++L         
Sbjct: 65  KSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQD 124

Query: 311 VGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV-T 369
           + ++I +   ++ A GNA T  N NS+R   ++++ F     + G     Y LEK R+  
Sbjct: 125 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRICV 184

Query: 370 GNRDPLQANFHIFYYFYDAMEAAGEL-DKYFLSPGRKYRYLRADVT-------DDKLPKG 421
            + +  + N+HIFY       A+ ++ +K  LS    +RYL    T        DK    
Sbjct: 185 QSAE--ERNYHIFYRLCAG--ASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQ 240

Query: 422 PRETPDTNVAKF--------QEIYQNLID----IEFDDIQ-MEIFSNVLAAILLIGEVEF 468
            R++P+                 +Q +      I  DD + +++F  V+A +L +G ++F
Sbjct: 241 NRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFR-VVAGVLHLGNIDF 299

Query: 469 E 469
           E
Sbjct: 300 E 300

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score =  119 bits (300), Expect = 2e-30
 Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 4/158 (2%)

Query: 13  IITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           I+  + +L E H VIHRD++ SN+LL   G VK+ DFG+S    ++  K ++  G  ++M
Sbjct: 123 IVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRS-AGCAAYM 181

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLY 130
           APE +         YD R DVW+LGI+ +EL  G+ P+++       L +I++  PP L 
Sbjct: 182 APERID-PPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLP 240

Query: 131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
               +S  +  F+  CL K+   RP   ELL+HPFI  
Sbjct: 241 PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRR 278

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score =  124 bits (312), Expect = 3e-30
 Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 11/288 (3%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+  LE + E  ++  L+ R      Y+++G +L+ +NP     +YG +   +Y  ++
Sbjct: 3   VEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRA 62

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ-GAAKV 311
             +N PH++A+A+ A+  M+  ++ Q ++++GE+ +GKT + K +L++L  + Q G+A +
Sbjct: 63  LGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVI 122

Query: 312 GEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGN 371
            E+I +   ++ A GNA T  N NS+R   ++++     G + GAI   Y LEK R+   
Sbjct: 123 TEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFL-EGGVIVGAITSQYLLEKSRIV-F 180

Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVA 431
           +   + N+HIFY     + A      + L     Y YL      +   K   +       
Sbjct: 181 QAKNERNYHIFYELLAGLPAQ-LRQAFSLQEAETYYYLNQGGNCEIAGKSDAD------- 232

Query: 432 KFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELA 479
            F+ +   +  + F     +    +LA+IL +G V FE    +  E+A
Sbjct: 233 DFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVA 280

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score =  119 bits (300), Expect = 4e-30
 Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 41/203 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IAFILK+++  + ++H    IHR ++ S++LL+ DG+V +     S        +
Sbjct: 98  LPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKR 157

Query: 61  KKTFLGSP-------SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
           ++     P        W++PE+++   + + GY+ + D++++GITA EL +G  PF+DM 
Sbjct: 158 QRVVHDFPKSSVKNLPWLSPEVLQ---QNLQGYNEKSDIYSVGITACELANGHVPFKDMP 214

Query: 114 PTRALFQIVRNPPPGLYRASN-------------------------------WSQHYVDF 142
            T+ L + VR   P L   S                                +S+H+  F
Sbjct: 215 ATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQF 274

Query: 143 IAECLEKNPEHRPYMSELLEHPF 165
           +  CL+++PE RP  S+LL H F
Sbjct: 275 VELCLQRDPESRPSASQLLNHSF 297

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score =  116 bits (293), Expect = 1e-29
 Identities = 49/161 (30%), Positives = 91/161 (56%), Gaps = 7/161 (4%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTFDKKKTFLG 66
            +++ G+ +LH + ++HRD++ +N+ L  +G +K+ DFG    L   T    ++ ++  G
Sbjct: 106 LQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAG 165

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL-FQIVRNP 125
           +P++MAPE++  G  +  G+    D+W+LG   +E+  GK P+ ++     + F +    
Sbjct: 166 TPAYMAPEVITGG--KGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGH 223

Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            P +  +   S    DF+  CLE +P+ RP  SELL+HPF+
Sbjct: 224 KPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score =  114 bits (288), Expect = 7e-29
 Identities = 61/148 (41%), Positives = 85/148 (57%), Gaps = 6/148 (4%)

Query: 22  ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK 81
           E  +IHRD++ SN+LL ++G +K+ DFG+S +  ++  K +   G   +MAPE  R    
Sbjct: 126 ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRD-AGCRPYMAPE--RIDPS 182

Query: 82  EVDGYDNRIDVWALGITAIELGDGKPPFED-MHPTRALFQIVRNPPPGLYRASN--WSQH 138
             DGYD R DVW+LGIT  E+  GK P+         L Q+V+  PP L  +    +S  
Sbjct: 183 ARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPS 242

Query: 139 YVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +V+FI  CL K+   RP   ELLEHPFI
Sbjct: 243 FVNFINLCLIKDESKRPKYKELLEHPFI 270

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  114 bits (287), Expect = 9e-29
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA----- 55
           + E      + EI+  + +LH N +IHRDL+  N+L+  +G +K+ DFGLS+        
Sbjct: 90  LDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQI 149

Query: 56  ---NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM 112
              +   + K  +G+P ++APE++        G+   +D W+LG    E   G PPF   
Sbjct: 150 NLNDDEKEDKRIVGTPDYIAPEVILG-----QGHSKTVDWWSLGCILYEFLVGIPPFHGE 204

Query: 113 HPTRALFQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---SELLEHPF 165
            P   +FQ + N     P  +      S   +D I++ L  +PE R       E+  HPF
Sbjct: 205 TP-EEIFQNILNGKIEWPEDV----EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPF 259

Query: 166 ITSL 169
              +
Sbjct: 260 FKGI 263

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score =  114 bits (287), Expect = 9e-29
 Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 21/181 (11%)

Query: 9   ILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           I   ++ G+ +L+  + ++HRD++ SN+L+   G++K+ DFG+S E  N+     TF+G+
Sbjct: 108 IAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI--ADTFVGT 165

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED-----------MHPTR 116
            ++M+PE ++ G K    Y  + DVW+LGI+ IEL  GK PF             M    
Sbjct: 166 STYMSPERIQ-GGK----YTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILD 220

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE-HPFITSLPENDLH 175
            L QIV+ PPP L  +S++ +   DF+  CL K+P  RP   +L    PFI +L  +++ 
Sbjct: 221 LLQQIVQEPPPRL-PSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQALRASNVD 279

Query: 176 L 176
           L
Sbjct: 280 L 280

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  115 bits (287), Expect = 4e-28
 Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 19/197 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFD 59
           +SE    FIL +I++ + +LH   +IHRD++  N+LL +DG  VK++DFGL++   +   
Sbjct: 98  LSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGS 157

Query: 60  K------KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                    T +G+P +MAPE++      +    +  D+W+LGIT  EL  G PPFE   
Sbjct: 158 TSSIPALPSTSVGTPGYMAPEVLL--GLSLAYASSSSDIWSLGITLYELLTGLPPFEGEK 215

Query: 114 PTRALFQIVRN----------PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            + A  Q ++            P         S+   D + + L K+P++R   S  L H
Sbjct: 216 NSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH 275

Query: 164 PFITSLPENDLHLSTVN 180
             +  L   +  LS + 
Sbjct: 276 DLLAHLKLKESDLSDLL 292

Length = 384

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  111 bits (280), Expect = 6e-28
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 26/166 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +  +I  GM +L   + +HRDL   N L+T++  VKI DFGLSR+       +K   G  
Sbjct: 107 MALQIAKGMEYLESKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKR-GGGK 165

Query: 69  S---WMAPEIMRCGHKEVDGYDNRI----DVWALGITAIEL-GDGKPPFEDMHPTRALFQ 120
               WMAPE ++         D +     DVW+ G+   E+   G+ P+  M     L  
Sbjct: 166 LPIKWMAPESLK---------DGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEL 216

Query: 121 IV---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           +    R P P      N      + + +C   +PE RP  SEL+E 
Sbjct: 217 LEDGYRLPRP-----ENCPDELYELMLQCWAYDPEDRPTFSELVED 257

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  109 bits (276), Expect = 3e-27
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 28/175 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     +I  GM +L     +HRDL   N L+ +D  VKI DFGLSR+  +    
Sbjct: 102 LSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYY 161

Query: 61  KKTFLG-SP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRA 117
           +K   G  P  WMAPE ++ G      + ++ DVW+ G+   E+   G  P+  +     
Sbjct: 162 RKKTGGKLPIRWMAPESLKDGI-----FTSKSDVWSFGVLLWEIFTLGATPYPGLSNEE- 215

Query: 118 LFQIVRN------P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           + + +R       P   P  LY          + +  C + +PE RP  SEL+E 
Sbjct: 216 VLEYLRKGYRLPKPEYCPDELY----------ELMLSCWQLDPEDRPTFSELVER 260

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score =  109 bits (274), Expect = 3e-27
 Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 14/160 (8%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN---TFDKKKTFLGS 67
           ++I+ GM +LH N ++HRD++G+N+L    G VK+ DFG S+       +    ++  G+
Sbjct: 113 RQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGT 172

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-- 125
           P WM+PE++       +GY  + DVW+LG T +E+   KPP+ +     A+F+I   P  
Sbjct: 173 PYWMSPEVISG-----EGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTN 227

Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           P      S+ S+H  DF+  C+     HRP   ELL HPF
Sbjct: 228 PQ---LPSHISEHARDFLG-CIFVEARHRPSAEELLRHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score =  114 bits (287), Expect = 6e-27
 Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VEDLA+L  ++E +++  L +R+ +   ++  G  LL +NP   L LY  K    ++   
Sbjct: 2   VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCK 61

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKV- 311
             D  PHIY++A +AY+ ++     Q I+  G + AGKTTS KH L++L           
Sbjct: 62  AEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRV 121

Query: 312 -GEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTG 370
             EK+     ++ A GN  T +N N+TR    + + F  +G+++ A      LE+ RV  
Sbjct: 122 SVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRV-A 180

Query: 371 NRDPLQANFHIFYYF 385
            R   + NF +F   
Sbjct: 181 RRPNGETNFVVFSQL 195

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score =  108 bits (270), Expect = 1e-26
 Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 13/163 (7%)

Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET-ANTFDKKK-----T 63
           +++I+ G+ +LH   +IHRD++G+N+L+   G +KI DFG+S++  AN+   K      +
Sbjct: 112 VRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPS 171

Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
             GS  WMAPE+++        Y  + D+W+LG   +E+  GK PF D    +A+F+I  
Sbjct: 172 LQGSVFWMAPEVVK-----QTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGE 226

Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           N  P +   SN S   +DF+ +  E +   RP  +ELL+HPF+
Sbjct: 227 NASPEI--PSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  107 bits (270), Expect = 1e-26
 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 15/152 (9%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SWMAPE 74
           GM +L   + IHRDL   N L+ ++  VKI DFGLSR+  +    +K     P  WMAPE
Sbjct: 114 GMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPE 173

Query: 75  IMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIV---RNPPPGLY 130
            ++ G      + ++ DVW+ G+   E+   G+ P+  M     L  +    R P P   
Sbjct: 174 SLKEGK-----FTSKSDVWSFGVLLWEIFTLGEQPYPGMSNEEVLEYLKNGYRLPQP--- 225

Query: 131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              N      D + +C  ++PE RP  SEL+E
Sbjct: 226 --PNCPPELYDLMLQCWAEDPEDRPTFSELVE 255

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  106 bits (267), Expect = 4e-26
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SWMAPE 74
           GM +L   + IHRDL   N L+ ++  VKI DFGLSR+  +    K      P  WMAPE
Sbjct: 115 GMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPE 174

Query: 75  IMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIV---RNPPPGLY 130
            ++ G      + ++ DVW+ G+   E+   G+ P+  M     L  +    R P P   
Sbjct: 175 SLKEGK-----FTSKSDVWSFGVLLWEIFTLGEEPYPGMSNAEVLEYLKKGYRLPKP--- 226

Query: 131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              N        + +C  ++PE RP  SEL+E
Sbjct: 227 --PNCPPELYKLMLQCWAEDPEDRPTFSELVE 256

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score =  106 bits (266), Expect = 6e-26
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 16/167 (9%)

Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-VKIVDFG----LSRETANTFDKKKTF 64
            ++++ G+ +LHEN +IHRD++G+N+L+   G+ ++I DFG    L+ +     + +   
Sbjct: 109 TEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQL 168

Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE-DMHPTR--ALFQI 121
           LG+ ++MAPE++R      + Y    DVW++G   IE+   KPP+  + H      +F+I
Sbjct: 169 LGTIAFMAPEVLRG-----EQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKI 223

Query: 122 VR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
                 P +    + S    D    CLE  PE RP   ELL+HP   
Sbjct: 224 ASATTAPSI--PEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR 268

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score =  106 bits (266), Expect = 7e-26
 Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 15/173 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  +  I   ++ G+ +L    ++HRD++ SN+L+   G+VK+ DFG+S +  N+   
Sbjct: 92  IPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI-- 149

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH------- 113
            KT++G+ ++MAPE +       + Y    DVW+LGI+ +EL  G+ P+  +        
Sbjct: 150 AKTYVGTNAYMAPERISG-----EQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLM 204

Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           P + L  IV   PP L     +S+ +V FI +C+ K P+ RP    L++HPFI
Sbjct: 205 PLQLLQCIVDEDPPVL-PVGQFSEKFVHFITQCMRKQPKERPAPENLMDHPFI 256

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score =  105 bits (264), Expect = 8e-26
 Identities = 48/168 (28%), Positives = 92/168 (54%), Gaps = 13/168 (7%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E+ + + L +I++ + ++H+  ++HRD++  N+ LTK G +K+ DFG+S+   + +   
Sbjct: 99  EEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMA 158

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           +T +G+P +M+PE+  C   +   Y+ + D+WALG    EL   K  F+  +P   + +I
Sbjct: 159 ETVVGTPYYMSPEL--CQGVK---YNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKI 213

Query: 122 V---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           V     P   +Y     S   +  +   L+++PE RP   E+L+ P +
Sbjct: 214 VQGNYTPVVSVY-----SSELISLVHSLLQQDPEKRPTADEVLDQPLL 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score =  107 bits (269), Expect = 9e-26
 Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 9/170 (5%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            EQ +A + ++I++G+ +LH  H++HRD++ SN+L+     VKI DFG+SR  A T D  
Sbjct: 166 DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPC 225

Query: 62  KTFLGSPSWMAPEIMRC--GHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTR 116
            + +G+ ++M+PE +     H   DGY    D+W+LG++ +E   G+ PF          
Sbjct: 226 NSSVGTIAYMSPERINTDLNHGAYDGYAG--DIWSLGVSILEFYLGRFPFGVGRQGDWAS 283

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +  I  + PP     +  S+ +  FI+ CL++ P  R    +LL+HPFI
Sbjct: 284 LMCAICMSQPPEAPATA--SREFRHFISCCLQREPAKRWSAMQLLQHPFI 331

Length = 353

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  107 bits (268), Expect = 9e-26
 Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 15/170 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EI+ G+ FLHE  +I+RDL+  NVLL  +G +KI DFG+ +E        
Sbjct: 94  DEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTT 153

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            TF G+P ++APEI+         Y   +D WALG+   E+  G+ PFE       LFQ 
Sbjct: 154 STFCGTPDYIAPEILS-----YQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDE-LFQS 207

Query: 122 VRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHR----PY-MSELLEHPF 165
           +        R   W S+     +   L KNPE R    P    ++  HPF
Sbjct: 208 ILEDEV---RYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPF 254

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score =  102 bits (257), Expect = 7e-25
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  +     +I+ G+  LH   ++HRD++  N+ L     VKI D G+++  ++  + 
Sbjct: 98  LPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNF 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T +G+P +++PE+  C  K    Y+ + DVWALG+   E   GK PF+  +    + +
Sbjct: 158 ANTIVGTPYYLSPEL--CEDKP---YNEKSDVWALGVVLYECCTGKHPFDANNQGALILK 212

Query: 121 IVRN---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP 164
           I+R    P   +Y     SQ     I +CL K+   RP   +LL +P
Sbjct: 213 IIRGVFPPVSQMY-----SQQLAQLIDQCLTKDYRQRPDTFQLLRNP 254

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  103 bits (258), Expect = 9e-25
 Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFDKK 61
           E  +   + EI+  +  LH+  +I+RD++  N+LL  +G V + DFGLS+E  A   ++ 
Sbjct: 104 ESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERA 163

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRALF 119
            +F G+  +MAPE++R G     G+D  +D W+LG+   EL  G  PF  +    +++  
Sbjct: 164 YSFCGTIEYMAPEVIRGGS---GGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEI 220

Query: 120 --QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR---PYMSELLEHPFITSLPENDL 174
             +I+++ PP        S    DFI + LEK+P+ R       E+  HPF   +  +DL
Sbjct: 221 SRRILKSKPP---FPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGIDWDDL 277

Query: 175 HLSTVNCQYK 184
               +   +K
Sbjct: 278 AAKRIPAPFK 287

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score =  102 bits (257), Expect = 1e-24
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 19/157 (12%)

Query: 20  LHENH--------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           L+E H        V+HRDL+ +N+ L  +  VK+ DFGL++   +     KT++G+P +M
Sbjct: 118 LYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYM 177

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYR 131
           +PE +         YD + D+W+LG    EL    PPF      R   Q+      G +R
Sbjct: 178 SPEQLN-HMS----YDEKSDIWSLGCLIYELCALSPPFT----ARNQLQLASKIKEGKFR 228

Query: 132 --ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
                +S    + I   L  +P+ RP   ELL+ P I
Sbjct: 229 RIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI 265

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score =  103 bits (259), Expect = 1e-24
 Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 45/201 (22%)

Query: 3   EQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           E  +  I   ++ G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++    
Sbjct: 98  ENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM--A 155

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PP-----FEDMH 113
            +F+G+ S+M+PE ++  H     Y  + D+W+LG++ +E+  G+   PP      E M 
Sbjct: 156 NSFVGTRSYMSPERLQGTH-----YTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMF 210

Query: 114 PTR------------------------ALFQ----IVRNPPPGLYRASNWSQHYVDFIAE 145
                                      A+F+    IV  PPP L   + +S  + DF+ +
Sbjct: 211 GRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGA-FSDEFQDFVDK 269

Query: 146 CLEKNPEHRPYMSELLEHPFI 166
           CL+KNP+ R  + EL +HPFI
Sbjct: 270 CLKKNPKERADLKELTKHPFI 290

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score =  100 bits (252), Expect = 4e-24
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 20/174 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE+ + F + EI+  + +LH   +IHRD++  N+LL + G V I DF ++ +   T D 
Sbjct: 97  FSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKV--TPDT 154

Query: 61  KKT-FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---- 115
             T   G+P +MAPE++    +   GY   +D W+LG+TA E   GK P+     T    
Sbjct: 155 LTTSTSGTPGYMAPEVLC--RQ---GYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQ 209

Query: 116 -RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR--PYMSELLEHPFI 166
            RA  +      P     + WS   +D I + LE++P+ R    + +L  HP+ 
Sbjct: 210 IRAKQETADVLYP-----ATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score =  100 bits (250), Expect = 6e-24
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 13/164 (7%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ I  I  +++ G+  LHE  ++HRDL+ +N+LL  +  VKI D G+S+         K
Sbjct: 102 EQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNM--AK 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--DMHPTRALFQ 120
           T +G+P +MAPE+ +        Y  + D+W+LG    E+    PPFE   M   R   Q
Sbjct: 160 TQIGTPHYMAPEVWKG-----RPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQ 214

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP 164
             + PP        +SQ   +FI   L+  P+ RP   ++L  P
Sbjct: 215 RGKYPPI----PPIYSQDLQNFIRSMLQVKPKLRPNCDKILASP 254

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 99.9 bits (249), Expect = 3e-23
 Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 21/200 (10%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + FLHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D 
Sbjct: 93  LPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDT 152

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------DM 112
             TF G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+        D 
Sbjct: 153 TSTFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQ 207

Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFI 166
           +    LFQ++      + R+ +     V  +   L K+P+ R          ++  HPF 
Sbjct: 208 NTEDYLFQVILEKQIRIPRSLSVKASSV--LKGFLNKDPKERLGCHPQTGFRDIKSHPFF 265

Query: 167 TSLPENDLHLSTVNCQYKDQ 186
            ++  + L    V   YK  
Sbjct: 266 RNIDWDLLEQKQVLPPYKPN 285

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 98.7 bits (247), Expect = 3e-23
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 64/209 (30%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S   I  I+ +++ G+ + H + ++HRDL+  N+L+ +DG +K+ DFGL+R        
Sbjct: 95  LSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLAR-------- 146

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPP 108
                G P           W  APEI+  G K    Y   +D+W++G I A E+  GKP 
Sbjct: 147 ---AFGIPLRTYTHEVVTLWYRAPEIL-LGSKH---YSTAVDIWSVGCIFA-EMITGKPL 198

Query: 109 F-----EDMHPTRALFQIVR-----NP--PPGLYRASNWSQHY----------------- 139
           F      D      LF+I +          PG+ +  ++   +                 
Sbjct: 199 FPGDSEIDQ-----LFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDP 253

Query: 140 --VDFIAECLEKNPEHRPYMSELLEHPFI 166
             +D +++ L+ NP  R    E L+HP+ 
Sbjct: 254 EGIDLLSKMLQYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 99.7 bits (248), Expect = 4e-23
 Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 19/198 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + FLHE  +I+RDL+  NVLL  DG +K+ D+G+ +E     D 
Sbjct: 93  LPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDT 152

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE------DMHP 114
             TF G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+      DM+ 
Sbjct: 153 TSTFCGTPNYIAPEILRG-----EEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNT 207

Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFITS 168
              LFQ++   P  + R  +    +V  +   L K+P+ R         S++  H F  S
Sbjct: 208 EDYLFQVILEKPIRIPRFLSVKASHV--LKGFLNKDPKERLGCQPQTGFSDIKSHTFFRS 265

Query: 169 LPENDLHLSTVNCQYKDQ 186
           +  + L    V   +K Q
Sbjct: 266 IDWDLLEKKQVTPPFKPQ 283

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 97.4 bits (242), Expect = 7e-23
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 20/164 (12%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN---TFDKKKTFLGS 67
           ++I+ G+ +LH N ++HRD++G+N+L    G VK+ DFG S+       +    K+  G+
Sbjct: 113 RQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGT 172

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-- 125
           P WM+PE++       +GY  + D+W++G T +E+   KPP+ +     A+F+I   P  
Sbjct: 173 PYWMSPEVISG-----EGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN 227

Query: 126 ---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
              PP +      S H  DF+     +  + RP   ELL H F+
Sbjct: 228 PVLPPHV------SDHCRDFLKRIFVE-AKLRPSADELLRHTFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 98.3 bits (245), Expect = 8e-23
 Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 19/174 (10%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EII G+ FLH+  +I+RDL+  NVLL KDG +KI DFG+ +E  N   K 
Sbjct: 94  DEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKA 153

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDMHPTRA 117
            TF G+P ++APEI++ G K    Y+  +D W+ G+   E+  G+ PF    ED      
Sbjct: 154 STFCGTPDYIAPEILK-GQK----YNESVDWWSFGVLLYEMLIGQSPFHGEDED-----E 203

Query: 118 LFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMS-ELLEHPFITSL 169
           LF  + N  P   R   W S+   D +++  E++P  R  +  ++ +HPF   +
Sbjct: 204 LFDSILNDRPHFPR---WISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGI 254

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 96.8 bits (241), Expect = 1e-22
 Identities = 50/165 (30%), Positives = 94/165 (56%), Gaps = 7/165 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E  I     +I   +  +H+  ++HRD++  N+ LTKDG +K+ DFG++R   +T +  
Sbjct: 99  PEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELA 158

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           +T +G+P +++PEI  C ++    Y+N+ D+WALG    E+   K  FE  +    + +I
Sbjct: 159 RTCIGTPYYLSPEI--CENRP---YNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKI 213

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +R   P +  +S++S    + +++  ++NP  RP ++ +LE  FI
Sbjct: 214 IRGSYPPV--SSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 96.6 bits (240), Expect = 1e-22
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 7/155 (4%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           +I   + +LHE H++HRDL+  NV LT+   +K+ D G++R   N  D   T +G+P +M
Sbjct: 110 QIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYM 169

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYR 131
           +PE+          Y+ + DVWALG    E+   K  F        +++I+    P +  
Sbjct: 170 SPELF-----SNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPM-- 222

Query: 132 ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             ++S    + IA  L K PE RP +  +L  P+I
Sbjct: 223 PKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI 257

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 95.1 bits (236), Expect = 6e-22
 Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK---KTFLGS 67
           ++I+ G+ +LH N ++HRD++G+N+L    G VK+ DFG S+            K+  G+
Sbjct: 113 RQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGT 172

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP- 126
           P WM+PE++       +GY  + DVW++  T +E+   KPP+ +     A+F+I   P  
Sbjct: 173 PYWMSPEVISG-----EGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTK 227

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           P L      S    DF+ +   +  + RP    LL HPF+
Sbjct: 228 PML--PDGVSDACRDFLKQIFVEE-KRRPTAEFLLRHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 94.2 bits (234), Expect = 1e-21
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 8/166 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE  +     +++ G+ ++H+  ++HRDL+  N+ L K+  +KI DFG+SR    + D 
Sbjct: 103 LSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFL-KNNLLKIGDFGVSRLLMGSCDL 161

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             TF G+P +M+PE ++  H+   GYD++ D+W+LG    E+      FE  +    + +
Sbjct: 162 ATTFTGTPYYMSPEALK--HQ---GYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLR 216

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           IV  P P L     +S+     +   L K+P  RP  +E+L +PFI
Sbjct: 217 IVEGPTPSL--PETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 95.3 bits (238), Expect = 1e-21
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 41/203 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ HI + L +I+ G+ +LH  +VIHRDL+ SN+L+  + ++KI DFGL+R      D+
Sbjct: 100 LTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDE 159

Query: 61  K--KTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIEL--------GD----- 104
           K   T      W  APE++    +    Y   ID+W++G    EL        G      
Sbjct: 160 KGFLTEYVVTRWYRAPELLLSSSR----YTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQ 215

Query: 105 --------GKPPFEDMHP---TRALFQIVRNPPPGLYRASNWSQHY-------VDFIAEC 146
                   G P  ED+      +A    +++ P         S+ +       +D + + 
Sbjct: 216 LNLIVEVLGTPSEEDLKFITSEKAR-NYLKSLPK--KPKKPLSKLFPGASPEAIDLLEKM 272

Query: 147 LEKNPEHRPYMSELLEHPFITSL 169
           L  +P+ R    E L HP++  L
Sbjct: 273 LVFDPKKRITADEALAHPYLAQL 295

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 94.5 bits (235), Expect = 2e-21
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   EI  G+ FLH   +I+RDL+  NV+L  +G +KI DFG+ +E        +
Sbjct: 100 EPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTR 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF G+P ++APEI+         Y   +D WA G+   E+  G+PPF D      LFQ +
Sbjct: 160 TFCGTPDYIAPEII-----AYQPYGKSVDWWAFGVLLYEMLAGQPPF-DGEDEDELFQSI 213

Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
                   ++   S+  V      L K+P  R         ++ EH F
Sbjct: 214 MEHNVSYPKS--LSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAF 259

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 94.5 bits (235), Expect = 2e-21
 Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 23/195 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE    F   EI++ + +LH   V++RDL+  N++L KDG +KI DFGL +E  +     
Sbjct: 93  SEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATM 152

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    + LF++
Sbjct: 153 KTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFEL 206

Query: 122 -----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPE 171
                +R P          S      +A  L+K+P+ R         E++EH F  S+  
Sbjct: 207 ILMEEIRFP-------RTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINW 259

Query: 172 NDLHLSTVNCQYKDQ 186
            D+    +   +K Q
Sbjct: 260 QDVVQKKLEPPFKPQ 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 25/281 (8%)

Query: 211 LEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYK-FKSRSDNEPHIYAVADSAYQ 269
           L+ R+     Y+    +L+ INP   L      +  +Y+  K      PH++  A  A +
Sbjct: 116 LKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALE 175

Query: 270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV---N-VIHAI 325
           ++   +++Q I+++GE+ AGKT + K ++++  F    +  +  KI+  +   N V+ A 
Sbjct: 176 NLHGVKKSQTIIVSGESGAGKTEATKQIMRY--FASSKSGNMDLKIQNAIMAANPVLEAF 233

Query: 326 GNAGTPINQNSTRHVLYMQVTFGSSGKL-SGAIFWLYQLEKWRVTGNRDPLQANFHIFYY 384
           GNA T  N NS+R   +MQ+  G  G +  G+I   + LEK RV   ++  + ++HIFY 
Sbjct: 234 GNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIV-AFLLEKSRVV-TQEDDERSYHIFYQ 291

Query: 385 FYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIE 444
                    + +KY L    +Y+Y+     D  +P       D  V  F+E+ ++   + 
Sbjct: 292 LLKGANDEMK-EKYKLKSLEEYKYINPKCLD--VP----GIDD--VKDFEEVMESFDSMG 342

Query: 445 FDDIQME-IFSNVLAAILLIGEVEFESSAE----NTAELAN 480
             + Q+E IFS +L+ +LL+G VE E   E    + A +++
Sbjct: 343 LSESQIEDIFS-ILSGVLLLGNVEIEGKEEGGLTDAAAISD 382

Length = 821

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 92.2 bits (230), Expect = 7e-21
 Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 40/196 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE  I  I+ +I+ G+  +H++   HRDL+  N+L++    VKI DFGL+RE  +    
Sbjct: 96  FSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS---- 151

Query: 61  KKTFLG--SPSWM-APEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE-----D 111
           +  +    S  W  APEI +R        Y + +D+WALG    EL   +P F      D
Sbjct: 152 RPPYTDYVSTRWYRAPEILLRSTS-----YSSPVDIWALGCIMAELYTLRPLFPGSSEID 206

Query: 112 M---------HPTRAL------------FQIVRNPPPGLYRA-SNWSQHYVDFIAECLEK 149
                      PT+              F+  +  P  L++   N S   +D I + L  
Sbjct: 207 QLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRW 266

Query: 150 NPEHRPYMSELLEHPF 165
           +P+ RP  S+ L+HP+
Sbjct: 267 DPKKRPTASQALQHPY 282

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 92.4 bits (229), Expect = 1e-20
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 93  TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 152

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R    I
Sbjct: 153 KTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI 207

Query: 122 ----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPEN 172
               +R P          S      +A  L+K+P+ R         E++EH F  S+   
Sbjct: 208 LMEEIRFP-------RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQ 260

Query: 173 DLHLSTVNCQYKDQ---ELQTMHVEDLAALETIS 203
           D+    +   +K Q   E+ T + +D    ++I+
Sbjct: 261 DVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 294

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 92.5 bits (230), Expect = 1e-20
 Identities = 62/230 (26%), Positives = 97/230 (42%), Gaps = 30/230 (13%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE H  F + E+   +  LHE   IHRDL+  N L+   G +K+ DFGLS         
Sbjct: 98  LSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLS---KGIVTY 154

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + +GSP +MAPE++R       GYD  +D W+LG    E   G PPF    P      
Sbjct: 155 ANSVVGSPDYMAPEVLRG-----KGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWEN 209

Query: 121 IVR-----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS--ELLEHPFITSLPEND 173
           +         P       N S    D I + +  +P  R + S  ++  HPF   +  N+
Sbjct: 210 LKYWKETLQRPVYDDPRFNLSDEAWDLITKLIN-DPSRR-FGSLEDIKNHPFFKEVDWNE 267

Query: 174 LHLSTVNCQYK-------DQELQTMHVEDLAALETISEDNIVQELEERHN 216
           L       + K       + E+ T + +D    + +++   V E ++   
Sbjct: 268 LR------ELKPPFVPELESEIDTGYFDDFENEDDMAKYKDVHEKKKAAG 311

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E    F +  ++    +LH   +I+RDL+  N+LL  +G VK+VDFG +++  +   K
Sbjct: 90  FDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG-QK 148

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRAL 118
             TF G+P ++APEI+        GYD  +D W+LGI   EL  G+PPF  +D  P    
Sbjct: 149 TWTFCGTPEYVAPEII-LNK----GYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIY 203

Query: 119 FQIVRNPPPGLYR---ASNWSQHYVDFIAECLEKNPEHR 154
             I++    G  +    +   +   D I + L +NPE R
Sbjct: 204 NDILK----GNGKLEFPNYIDKAAKDLIKQLLRRNPEER 238

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 91.4 bits (227), Expect = 2e-20
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 17/171 (9%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   E+   ++FLH + VI+RDL+  N+LL  +G  K+ DFG+ +E         
Sbjct: 95  EPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTT 154

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF G+P ++APEI+    +E++ Y   +D WALG+   E+  G+PPFE  +    LF+ +
Sbjct: 155 TFCGTPDYIAPEIL----QELE-YGPSVDWWALGVLMYEMMAGQPPFEADNEDD-LFESI 208

Query: 123 RNPPPGLYRASNW-SQHYVDFIAECLEKNPEHR-------PYMSELLEHPF 165
            +    LY    W S+  V  +   + KNP  R            + +HPF
Sbjct: 209 LHDDV-LYPV--WLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPF 256

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 39/204 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S+ HI F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 115 LSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTD---DE 171

Query: 61  KKTFLGSPSWMAPEIMRC-GHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTR 116
              ++ +  + APEIM    H     Y+  +D+W++G    EL  GK  F   + +   +
Sbjct: 172 MTGYVATRWYRAPEIMLNWMH-----YNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLK 226

Query: 117 ALFQIVRNPPPGLY------RASNWSQHY-------------------VDFIAECLEKNP 151
            +  +V  P   L        A N+ Q                     +D + + L  +P
Sbjct: 227 RIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDP 286

Query: 152 EHRPYMSELLEHPFITSL--PEND 173
           + R   +E L HP++     PE++
Sbjct: 287 DKRITAAEALAHPYLAEYHDPEDE 310

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related kinase adapter protein alpha

 Score = 91.5 bits (227), Expect = 3e-20
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 57/217 (26%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---------KIVDFGLS 51
           MSE  IA+IL+ ++  + ++H    +HR ++ S++L++ DG+V          +++ G  
Sbjct: 98  MSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQR 157

Query: 52  RETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
               + F K    +    W++PE+++   + + GYD + D++++GITA EL +G  PF+D
Sbjct: 158 LRVVHDFPKYSVKV--LPWLSPEVLQ---QNLQGYDAKSDIYSVGITACELANGHVPFKD 212

Query: 112 MHPTRALFQ--------------------------------IVRNPPPGLYRASN----- 134
           M  T+ L +                                +  +      R SN     
Sbjct: 213 MPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSS 272

Query: 135 ------WSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
                 +S H+  F+ +CL++NP+ RP  S LL H F
Sbjct: 273 HPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSF 309

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha, stabilized through ATP and MO25, may be needed to activate LKB1. A mutation which results in a truncation of a C-terminal part of the human STRAD-alpha pseudokinase domain and disrupts its association with LKB1, leads to PMSE (polyhydramnios, megalencephaly, symptomatic epilepsy) syndrome. Several splice variants of STRAD-alpha exist which exhibit different effects on the localization and activation of LKB1. Length = 327

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 91.2 bits (226), Expect = 3e-20
 Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 11/160 (6%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F   EII G+ FLH   +++RDL+  N+LL  DG +KI DFG+ +E      K  TF G+
Sbjct: 100 FYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGT 159

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP 127
           P ++APEI+  G K    Y+  +D W+ G+   E+  G+ PF   H    LFQ +R   P
Sbjct: 160 PDYIAPEIL-LGQK----YNTSVDWWSFGVLLYEMLIGQSPFHG-HDEEELFQSIRMDNP 213

Query: 128 GLYRASNW-SQHYVDFIAECLEKNPEHR-PYMSELLEHPF 165
              R   W ++   D + +   + PE R     ++ +HPF
Sbjct: 214 CYPR---WLTREAKDILVKLFVREPERRLGVKGDIRQHPF 250

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE    F    ++ G+ +LHEN +++RDL+  N+LL  +G VKI DFGL +E     D+ 
Sbjct: 99  SEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRT 158

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            TF G+P ++APE++         Y   +D W LG+   E+  G+ PF           I
Sbjct: 159 STFCGTPEFLAPEVL-----TETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSI 213

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE-----LLEHPF 165
           V +     Y     S+  +  +   L +NPE R    E     + + PF
Sbjct: 214 VNDEVR--Y-PRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPF 259

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 89.5 bits (223), Expect = 6e-20
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 33/195 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            +E  I   +K+++ G+ +LH N ++HRD++GSN+L+  DG +K+ DFGL+R        
Sbjct: 97  FTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSA 156

Query: 61  KKTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------EDMH 113
             T      W   PE++  G      Y   +D+W++G    EL  GKP F      E + 
Sbjct: 157 DYTNRVITLWYRPPELL-LGATR---YGPEVDMWSVGCILAELFLGKPIFQGSTELEQLE 212

Query: 114 --------PTRA------------LFQIVRNPPPGL--YRASNWSQHYVDFIAECLEKNP 151
                   PT                +  +     L  +         +D + + L  +P
Sbjct: 213 KIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDP 272

Query: 152 EHRPYMSELLEHPFI 166
           + R    + L+H + 
Sbjct: 273 KKRISADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 89.2 bits (222), Expect = 7e-20
 Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 50/197 (25%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-- 59
            E+   F   EI+  + +LH   +IHRDL+  N+LL KD  +KI DFG    TA   D  
Sbjct: 100 DEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFG----TAKVLDPN 155

Query: 60  ----------------------KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGI 97
                                 +  +F+G+  +++PE++    K   G  +  D+WALG 
Sbjct: 156 SSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLN--EKPA-GKSS--DLWALGC 210

Query: 98  TAIELGDGKPPFEDMHPTRALFQIVRN-----PPPGLYRASNWSQHYVDFIAECLEKNPE 152
              ++  GKPPF   +     FQ +       PP       N+     D I + L  +P+
Sbjct: 211 IIYQMLTGKPPFRGSNEYL-TFQKILKLEYSFPP-------NFPPDAKDLIEKLLVLDPQ 262

Query: 153 HRP----YMSELLEHPF 165
            R        EL  HPF
Sbjct: 263 DRLGVNEGYDELKAHPF 279

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 90.1 bits (223), Expect = 7e-20
 Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 53/211 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 100 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 158

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 159 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELEL 212

Query: 111 -------------------------------DMHPTRALFQ----IVRNPPPGLYRASNW 135
                                          D  P  A+F+    IV  PPP L  +  +
Sbjct: 213 MFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKL-PSGVF 271

Query: 136 SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
              + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 272 GAEFQDFVNKCLIKNPAERADLKQLMVHAFI 302

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 90.1 bits (223), Expect = 8e-20
 Identities = 60/179 (33%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI + + +LH  ++++RDL+  N+LL   G V + DFGL +E     D   
Sbjct: 95  EPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTT 154

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF G+P ++APE++R        YDN +D W LG    E+  G PPF           I+
Sbjct: 155 TFCGTPEYLAPEVIR-----KQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNIL 209

Query: 123 RNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR----PYMSELLEHPFITSLPENDL 174
             P    PG    + WS      + E LEK+ + R        E+ EHPF  SL   DL
Sbjct: 210 HKPLVLRPGASLTA-WS-----ILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDL 262

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 89.9 bits (223), Expect = 9e-20
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 21/176 (11%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F L EI   +  LH+  +I+RDL+  N+LL   G VK+ DFGL +E+ +      TF G+
Sbjct: 104 FYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGT 163

Query: 68  PSWMAPEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--- 123
             +MAPEI MR GH +       +D W+LG    ++  G PPF   +  + + +I++   
Sbjct: 164 IEYMAPEILMRSGHGKA------VDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKL 217

Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDL 174
           N PP L      +    D + + L++NP  R        +E+  HPF   +  +DL
Sbjct: 218 NLPPYL------TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWDDL 267

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 89.6 bits (222), Expect = 1e-19
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 54/222 (24%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           MSE  I  IL   + G+ +LH+N  IHR+++ S++L++ DG V +              K
Sbjct: 98  MSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQK 157

Query: 61  KKTFLGSPS-------WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
            K     P        W++PE++R   +++ GY+ + D++++GITA EL  G+ PF+DM 
Sbjct: 158 AKVVYDFPQFSTSVLPWLSPELLR---QDLYGYNVKSDIYSVGITACELATGRVPFQDML 214

Query: 114 PTRALFQIVRNPP----------------------------PGLYRAS------------ 133
            T+ L Q ++ PP                              +  A             
Sbjct: 215 RTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRT 274

Query: 134 ----NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
                +S  + + +  CL+++PE RP  S LL H F   + E
Sbjct: 275 PSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKE 316

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE    F + E++  +  LH+  +++RDL+  N+LL   G + + DFGLS+         
Sbjct: 94  SEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTT 153

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-----EDMHPTR 116
            TF G+  ++APE++     +  GY   +D W+LG+   E+  G  PF     + M+   
Sbjct: 154 NTFCGTTEYLAPEVLL----DEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNI 209

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR----PYMSELLEHPFITSLPEN 172
           A F  VR P   L      S     F+   L +NP+HR        EL EHPF   +  +
Sbjct: 210 A-FGKVRFPKNVL------SDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWD 262

Query: 173 DLHLSTVNCQYKDQ 186
            L    +   +K  
Sbjct: 263 LLSKKQITPPFKPI 276

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 88.4 bits (219), Expect = 1e-19
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 17/178 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E    F   +II+G+  LH+  +I+RDL+  NVLL  DG V+I D GL+ E  +   K
Sbjct: 94  FPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK 153

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDMHPTR 116
            K + G+P +MAPE+++      + YD  +D +ALG+T  E+   + PF    E +    
Sbjct: 154 TKGYAGTPGFMAPELLQG-----EEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE 208

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSL 169
              +I+ +    +     +S     F    L K+PE R          L  HP    L
Sbjct: 209 LKQRILNDS---VTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDL 263

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 27/180 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E      + E++ G+  LH+  +IHRD++  N+L+ + G +K+ DFGLSR   N  + 
Sbjct: 94  LPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSR---NGLEN 150

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK F+G+P ++APE +        G D   D W+LG    E   G PPF    P  A+F 
Sbjct: 151 KK-FVGTPDYLAPETI-----LGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP-DAVFD 203

Query: 121 IVRNPPPGLYRASNW--------SQHYVDFIAECLEKNPEHR---PYMSELLEHPFITSL 169
            +      L R  NW        S   VD I   L  +P  R       E+  HPF  S+
Sbjct: 204 NI------LSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSI 257

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 19/168 (11%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F   EI+ G+ FLH   +I+RDL+  NV+L +DG +KI DFG+ +E     ++  TF G+
Sbjct: 100 FYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGT 159

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDMHPTRALFQIVR 123
           P ++APEI++ G K    Y   +D W+ G+   E+  G+ PF    ED      LF+ +R
Sbjct: 160 PDYIAPEILQ-GLK----YTFSVDWWSFGVLLYEMLIGQSPFHGDDED-----ELFESIR 209

Query: 124 NPPPGLYRASNW-SQHYVDFIAECLEKNPEHR-PYMSELLEHPFITSL 169
              P   R   W ++   D + +  E++P  R   +  +  HPF  ++
Sbjct: 210 VDTPHYPR---WITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI 254

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 87.3 bits (216), Expect = 2e-19
 Identities = 48/166 (28%), Positives = 95/166 (57%), Gaps = 8/166 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDK 60
           SE  I     +I  G+  +H+  ++HRD++  N+ L+K+G V K+ DFG++R+  ++ + 
Sbjct: 99  SEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL 158

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T +G+P +++PEI  C ++    Y+N+ D+W+LG    EL   K PFE  +  + + +
Sbjct: 159 AYTCVGTPYYLSPEI--CQNRP---YNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLK 213

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +     +  + N+S+     I++  + +P  RP ++ +L+ PF+
Sbjct: 214 ICQGYFAPI--SPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL 257

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 87.5 bits (217), Expect = 3e-19
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 32/185 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
            L +I+ G+ F H +++IHRD++  N+L+++ G VK+ DFG +R  A   +    ++ + 
Sbjct: 105 YLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATR 164

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV------ 122
            + APE++    K    Y   +D+WA+G    E+  G+P F        L+ I+      
Sbjct: 165 WYRAPELLVGDTK----YGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNL 220

Query: 123 ---------RNPP-------------PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                    +NP              P   R    S   +D   +CL  +P+ RP  S+L
Sbjct: 221 IPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQL 280

Query: 161 LEHPF 165
           L H F
Sbjct: 281 LHHEF 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 40/207 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E+HI + L +++ G+ ++H  +VIHRDL+ SN+L+ +D E++I DFG++R  +++  +
Sbjct: 104 LTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTE 163

Query: 61  KKTFLG---SPSWM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGD----------- 104
            K F+    +  W  APE++      +  Y   ID+W++G I A  LG            
Sbjct: 164 HKYFMTEYVATRWYRAPELLL----SLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVH 219

Query: 105 ---------GKPPFEDMHP-----TRALFQIVRNPPP----GLYRASNWSQHYVDFIAEC 146
                    G P  E ++       R   Q +    P     ++     S   +D +++ 
Sbjct: 220 QLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFP--KASPEALDLLSQM 277

Query: 147 LEKNPEHRPYMSELLEHPFITSLPEND 173
           L+ +PE R  + + L+HPF+    + D
Sbjct: 278 LQFDPEERITVEQALQHPFLAQYHDPD 304

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 86.6 bits (214), Expect = 6e-19
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFDK 60
            EQ +     EI+  +  LH+  +I+RD++  N+LL  +G V + DFGLS+E   +  ++
Sbjct: 103 KEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVER 162

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDMHPTR 116
             +F G+  +MAP+I+R G     G+D  +D W++G+   EL  G  PF    E      
Sbjct: 163 AYSFCGTIEYMAPDIVRGGDG---GHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAE 219

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPE 171
              +I+++ PP     S  ++   D I   L K+P+ R         E+ +HPF   +  
Sbjct: 220 ISRRILKSEPPYPQEMSALAK---DIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINW 276

Query: 172 NDLHLSTVNCQYK 184
           +DL    V   +K
Sbjct: 277 DDLAAKKVPAPFK 289

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 87.0 bits (215), Expect = 8e-19
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--K 60
           E H  F   EI  G+ FLH   +I+RDL+  NV+L  +G +KI DFG+ +E  N +D   
Sbjct: 100 EPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE--NMWDGVT 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
            KTF G+P ++APEI+         Y   +D WA G+   E+  G+ PFE
Sbjct: 158 TKTFCGTPDYIAPEIIA-----YQPYGKSVDWWAFGVLLYEMLAGQAPFE 202

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 17/211 (8%)

Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH E +V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 93  SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 152

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    + LF+
Sbjct: 153 MKTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFE 206

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           ++        R    S      ++  L+K+P+ R         E+++H F   +   D++
Sbjct: 207 LILMEEIRFPR--TLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVY 264

Query: 176 LSTVNCQYKDQ---ELQTMHVEDLAALETIS 203
              +   +K Q   E  T + ++    + I+
Sbjct: 265 EKKLVPPFKPQVTSETDTRYFDEEFTAQMIT 295

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 10/116 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDK 60
            E    F   +++  + +LH   +++RDL+  N+LL  DG +KI DFG + R    T+  
Sbjct: 99  PEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTY-- 156

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
             T  G+P ++APEI+    K   GY   +D WALGI   E+  G PPF D +P +
Sbjct: 157 --TLCGTPEYLAPEIIL--SK---GYGKAVDWWALGILIYEMLAGYPPFFDDNPIQ 205

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 86.3 bits (213), Expect = 1e-18
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 21/183 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D 
Sbjct: 93  LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 152

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------DM 112
             TF G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+        D 
Sbjct: 153 TSTFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ 207

Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFI 166
           +    LFQ++      + R+   S      +   L K+P+ R         +++  HPF 
Sbjct: 208 NTEDYLFQVILEKQIRIPRS--LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 265

Query: 167 TSL 169
            ++
Sbjct: 266 RNV 268

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 84.6 bits (209), Expect = 2e-18
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 13/162 (8%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E  I     ++  G+  +HE  V+HRD++  N+ LT++G+VK+ DFG +R   +      
Sbjct: 99  EDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYAC 158

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T++G+P ++ PEI      E   Y+N+ D+W+LG    EL   K PF+       + ++ 
Sbjct: 159 TYVGTPYYVPPEIW-----ENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVC 213

Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           +    P P  Y   ++    +  I +  ++NP  RP  + +L
Sbjct: 214 QGSYKPLPSHY---SYELRSL--IKQMFKRNPRSRPSATTIL 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 36/198 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H    + +I+ G+ ++H  +V+HRDL+  N+L+  D E+KI DFGL+R  +    +
Sbjct: 102 LTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGE 161

Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MH 113
              F+     +  + APEIM         Y   IDVW++G    EL   KP F+    + 
Sbjct: 162 NAGFMTEYVATRWYRAPEIML----SFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVD 217

Query: 114 PTRALFQIVRNPPPGLYR--ASNWSQHYV-----------------------DFIAECLE 148
               + Q++  P         S  +Q+Y+                       D + + L 
Sbjct: 218 QLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLA 277

Query: 149 KNPEHRPYMSELLEHPFI 166
            +P  R  + E LEHP++
Sbjct: 278 FDPTKRISVEEALEHPYL 295

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 58/183 (31%), Positives = 80/183 (43%), Gaps = 30/183 (16%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   +II G+  LH+  +++RDL+  NVLL   G V+I D GL+ E       K
Sbjct: 93  PEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELK---GGK 149

Query: 62  KT--FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---- 115
           K     G+P +MAPE+++    EV  YD  +D +ALG T  E+  G+ PF          
Sbjct: 150 KIKGRAGTPGYMAPEVLQ---GEV--YDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKE 204

Query: 116 ----RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFI 166
               R L   V  P         +S    D     L+K+PE R         E+ EHP  
Sbjct: 205 ELKRRTLEMAVEYP-------DKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLF 257

Query: 167 TSL 169
             L
Sbjct: 258 KDL 260

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 85.5 bits (211), Expect = 2e-18
 Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE    F   EI++ + +LH   +++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 92  FSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAAT 151

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    + LF+
Sbjct: 152 MKTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFE 205

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           ++        R    S      ++  L K+P  R         E++ H F T +   D++
Sbjct: 206 LILMEDIKFPR--TLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQDVY 263

Query: 176 LSTVNCQYKDQ---ELQTMHVEDLAALETIS 203
              +   +K Q   E  T + ++    +TI+
Sbjct: 264 DKKLVPPFKPQVTSETDTRYFDEEFTAQTIT 294

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 85.8 bits (212), Expect = 2e-18
 Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 19/207 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII  +  LH+  +++RD++  N+LL  +G V + DFGLS+E   + +K+
Sbjct: 103 SEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFL-SEEKE 161

Query: 62  KT--FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDMHPT 115
           +T  F G+  +MAPEI+R       G+   +D W+LGI   EL  G  PF    E    +
Sbjct: 162 RTYSFCGTIEYMAPEIIRGK----GGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQS 217

Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLP 170
               +I++  PP        +Q   D + + L K+P+ R        SE+ EHPF   L 
Sbjct: 218 EVSRRILKCDPPFPSFIGPEAQ---DLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLD 274

Query: 171 ENDLHLSTVNCQYKDQELQTMHVEDLA 197
              L L  VN  ++      + V + A
Sbjct: 275 WEALALRKVNPPFRPSIRNELDVGNFA 301

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 8/107 (7%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F   EI+  + +LH   +++RDL+  N+LL K+G +K+ DFG +++     D+  T  G+
Sbjct: 105 FYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR---DRTWTLCGT 161

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
           P ++APE++     +  G++  +D WALGI   E+  G PPF D +P
Sbjct: 162 PEYLAPEVI-----QSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP 203

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 85.1 bits (210), Expect = 4e-18
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 55/201 (27%)

Query: 13  IITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++ G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++     +F+G+ S+M
Sbjct: 112 VLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM--ANSFVGTRSYM 169

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------------------- 110
           +PE ++  H     Y  + D+W++G++ +EL  G+ P                       
Sbjct: 170 SPERLQGTH-----YSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEG 224

Query: 111 ---------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQHYVDFIAE 145
                                D  P  A+F+    IV  PPP L     ++  + +F+ +
Sbjct: 225 EPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGV-FTPDFQEFVNK 283

Query: 146 CLEKNPEHRPYMSELLEHPFI 166
           CL KNP  R  +  L+ H FI
Sbjct: 284 CLIKNPAERADLKMLMNHTFI 304

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 84.6 bits (209), Expect = 4e-18
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 17/168 (10%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F   E++  +  LH+ +VI+RDL+  N+LL   G + + DFGL +      DK  TF G+
Sbjct: 97  FYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGT 156

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-- 125
           P ++APE++  GH    GY   +D W LG+   E+  G PPF D +      +I++ P  
Sbjct: 157 PEYLAPELL-LGH----GYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLR 211

Query: 126 -PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS---ELLEHPFITSL 169
            P G  R +       D +   L ++P  R   +   E+  HPF + L
Sbjct: 212 FPDGFDRDAK------DLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL 253

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 84.6 bits (209), Expect = 5e-18
 Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 21/222 (9%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI + ++FLH+  +I+RDL+  NVLL  +G  K+ DFG+ +E         
Sbjct: 95  EARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTS 154

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF G+P ++APEI+     +   Y   +D WA+G+   E+  G  PFE       LF+ +
Sbjct: 155 TFCGTPDYIAPEIL-----QEMLYGPSVDWWAMGVLLYEMLCGHAPFE-AENEDDLFEAI 208

Query: 123 RNPPPGLYRASNW-SQHYVDFIAECLEKNPEHR------PYMSELLEHPFITSLPENDLH 175
            N    +Y    W SQ  VD +   + KNP  R           +L HPF   L    L+
Sbjct: 209 LNDEV-VY--PTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLN 265

Query: 176 LSTVNCQYKDQELQTMHVEDLAAL--ETISEDNIVQELEERH 215
              +   ++    +    ED++    + I ED ++  +EE  
Sbjct: 266 RRQIEPPFRP---RIKSREDVSNFDPDFIKEDPVLTPIEESL 304

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 84.5 bits (209), Expect = 6e-18
 Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EI + + +LH  ++I+RDL+  N+LL   G V + DFGL +E        
Sbjct: 94  PEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTT 153

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            TF G+P ++APE++R   K+   YD  +D W LG    E+  G PPF           I
Sbjct: 154 STFCGTPEYLAPEVLR---KQ--PYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNI 208

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPE----HRPYMSELLEHPFITSLPENDL 174
           +  P   L    N S      +   L+K+       +    E+  H F +S+  +DL
Sbjct: 209 LNKP---LRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDDL 262

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 37/196 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I   L +++ G+ F H + ++HRDL+  N+L+  +G +K+ DFGL+R   +    
Sbjct: 95  LPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP 154

Query: 61  KKTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
              ++ +  + APE++         GY   +D+W++G    EL   +P F        LF
Sbjct: 155 YTHYVVTRWYRAPELLLGDK-----GYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLF 209

Query: 120 QI-----------------------------VRNPPPGLYRASNWSQHYVDFIAECLEKN 150
           +I                                P P L+   N S   +D +++ L  +
Sbjct: 210 KIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLF--PNASPQALDLLSQMLHYD 267

Query: 151 PEHRPYMSELLEHPFI 166
           P  R    + L HP+ 
Sbjct: 268 PHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI  G+ FLH   +I+RDL+  NV+L  +G +KI DFG+ +E        +
Sbjct: 100 EPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTR 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           TF G+P ++APEI+         Y   +D WA G+   E+  G+PPF D      LFQ
Sbjct: 160 TFCGTPDYIAPEII-----AYQPYGKSVDWWAYGVLLYEMLAGQPPF-DGEDEDELFQ 211

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 42/195 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++++++ G+ FLH + ++HRDL+  N+L+T DG+VKI DFGL+R    +F+ 
Sbjct: 104 LPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLAR--IYSFEM 161

Query: 61  KKTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE---DMHPTR 116
             T +    W  APE++         Y   +D+W++G    EL   +P F    +     
Sbjct: 162 ALTSVVVTLWYRAPEVLL-----QSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLD 216

Query: 117 ALFQIVRNPPPGLYRASNW--------------------------SQHYVDFIAECLEKN 150
            +F ++  P         W                           +  +D + + L  N
Sbjct: 217 KIFDVIGLPS-----EEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFN 271

Query: 151 PEHRPYMSELLEHPF 165
           P  R    E L+HP+
Sbjct: 272 PHKRISAFEALQHPY 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 21/179 (11%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DK 60
           E     +  +++  +  +H  H+IHRD++ +N+LL  +G VK+ DFG S+  A T   D 
Sbjct: 142 EHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDV 201

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRAL 118
            +TF G+P ++APEI R        Y  + D+++LG+   EL   K PF  E+M      
Sbjct: 202 GRTFCGTPYYVAPEIWR-----RKPYSKKADMFSLGVLLYELLTLKRPFDGENME----- 251

Query: 119 FQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP----FITSLPE 171
            +++     G Y     + S    + +   L  +P+ RP  S+LL  P    FI+ L E
Sbjct: 252 -EVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLFISGLLE 309

Length = 496

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 80.1 bits (198), Expect = 7e-17
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 11/164 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           +    +  +  ++  GM +L   H +HRDL   NVLL    + KI DFG+SR     + +
Sbjct: 92  IPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY 151

Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            +  T    P  W APE +  G      + ++ DVW+ G+T  E    G  P+ +M    
Sbjct: 152 YRATTAGRWPLKWYAPECINYGK-----FSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAE 206

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            +  +       L R     Q     +  C +  PE RP  SEL
Sbjct: 207 VIAMLESGER--LPRPEECPQEIYSIMLSCWKYRPEDRPTFSEL 248

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 81.0 bits (200), Expect = 8e-17
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKKKTFLG 66
           F   E++    +LH   +I+RDL+  N+LL   G VK+ DFG + +    TF    T  G
Sbjct: 122 FYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTF----TLCG 177

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
           +P ++APE++     +  G+   +D W +G+   E   G PPF D  P R   +I+    
Sbjct: 178 TPEYLAPEVI-----QSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILA--- 229

Query: 127 PGLYRASNWSQHYV-DFIAECLEKNPEHR 154
            G  +  NW      D +   L+ +   R
Sbjct: 230 -GRLKFPNWFDGRARDLVKGLLQTDHTKR 257

Length = 329

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+ + F L E+   +  LH   +I+RDL+  N+LL ++G +K+ DFGLS+E+ +   K 
Sbjct: 96  TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA 155

Query: 62  KTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            +F G+  +MAPE++ R GH          D W+ G+   E+  G  PF+       +  
Sbjct: 156 YSFCGTVEYMAPEVVNRRGH------TQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTM 209

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDL 174
           I++     L      S      +    ++NP +R       + E+  HPF +++  N L
Sbjct: 210 ILKAK---LGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNKL 265

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 36/199 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S+ H  + L +++ G+ ++H  +V+HRDL+ SN+LL  + ++KI DFGL+R T+   D 
Sbjct: 105 LSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDF 164

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTRA 117
              ++ +  + APE++         Y   IDVW++G    EL   KP F   + +H  + 
Sbjct: 165 MTEYVVTRWYRAPELLLN----CSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKL 220

Query: 118 LFQI--------------------VRNPPPGLYRASNWSQHY-------VDFIAECLEKN 150
           + ++                    +R+ P       ++++ +       +D + + L  +
Sbjct: 221 ITELLGSPSEEDLGFIRNEKARRYIRSLPY--TPRQSFARLFPHANPLAIDLLEKMLVFD 278

Query: 151 PEHRPYMSELLEHPFITSL 169
           P  R  + E L HP++ SL
Sbjct: 279 PSKRITVEEALAHPYLASL 297

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 53/206 (25%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +   I   +   + G+ +LH N ++HRDL+ +N+L+  DG +K+ DFGL+R         
Sbjct: 100 TPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLAR--------- 150

Query: 62  KTFLGSPS----------WM-APEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
               GSP+          W  APE+     H     Y   +D+W++G    EL    P  
Sbjct: 151 --SFGSPNRKMTHQVVTRWYRAPELLFGARH-----YGVGVDMWSVGCIFAELLLRVPFL 203

Query: 110 EDMHPTRAL---FQIV----------------------RNPPPGLYRASNWSQHYVDFIA 144
                   L   F+ +                        P P        S   +D + 
Sbjct: 204 PGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQ 263

Query: 145 ECLEKNPEHRPYMSELLEHPFITSLP 170
             L  NP  R    + LEHP+ ++ P
Sbjct: 264 RLLTLNPNKRITARQALEHPYFSNDP 289

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 14/156 (8%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++ + +  +H   ++HRD++ +NV +T  G VK+ D GL R  ++      + +G+P +M
Sbjct: 114 QLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYM 173

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE-DMHPTRALFQIVRN----PP 126
           +PE +       +GY+ + D+W+LG    E+   + PF  D     +L + +      P 
Sbjct: 174 SPERIH-----ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPL 228

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           P    A ++S+   D ++ C+  +PE RP +S +L+
Sbjct: 229 P----ADHYSEELRDLVSRCINPDPEKRPDISYVLQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 35/197 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL  + ++KI DFGL+R      D 
Sbjct: 103 LSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDH 162

Query: 61  KKT---FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---- 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F        
Sbjct: 163 TGFLTEYVATRWYRAPEIML----NSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQ 218

Query: 114 ----------PTRALFQIVRNPPPGLY-------RASNWSQHY-------VDFIAECLEK 149
                     P++     + +     Y           W++ +       +D + + L  
Sbjct: 219 LNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTF 278

Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + E L HP++
Sbjct: 279 NPHKRITVEEALAHPYL 295

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 78.5 bits (193), Expect = 6e-16
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   E+ + + +LH  ++I+RDL+  N+LL   G V + DFGL +E     +  
Sbjct: 94  LEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETT 153

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            TF G+P ++APE++R   KE   YD  +D W LG    E+  G PPF     ++    I
Sbjct: 154 STFCGTPEYLAPEVLR---KE--PYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNI 208

Query: 122 VRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR----PYMSELLEHPFITSLPENDL 174
           +  P   P G   A+       D +   L K+   R        E+  H F + +  +DL
Sbjct: 209 LHKPLQLPGGKTVAA------CDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDL 262

Query: 175 H 175
           +
Sbjct: 263 Y 263

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-------TFDKKKTF 64
           +I  GM +L     IHRDL   N+LL  D +VKI DFGL R               K  F
Sbjct: 105 QIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPF 164

Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE +R        + +  DVW  G+T  E+   G+ P+  +  ++ L +I +
Sbjct: 165 ----AWCAPESLRTRT-----FSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDK 215

Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                L R     Q   + + +C   NP  RP  + L E
Sbjct: 216 EGER-LERPEACPQDIYNVMLQCWAHNPADRPTFAALRE 253

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 43/199 (21%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---------- 51
           SE+   F   E++  + +LH   +++RDL+  N+LL + G + + DF LS          
Sbjct: 101 SEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPV 160

Query: 52  --------------RETANTF-----DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDV 92
                            + TF      +  +F+G+  ++APE++       DG+ + +D 
Sbjct: 161 SKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISG-----DGHGSAVDW 215

Query: 93  WALGITAIELGDGKPPFEDMHPTRALFQIVRNPP--PGLYRASNWSQHYVDFIAECLEKN 150
           W LGI   E+  G  PF+  +       I++     PG    S+ ++   D I + L K+
Sbjct: 216 WTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSAR---DLIRKLLVKD 272

Query: 151 PEHR----PYMSELLEHPF 165
           P  R       +E+ +HPF
Sbjct: 273 PSKRLGSKRGAAEIKQHPF 291

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 78.2 bits (192), Expect = 8e-16
 Identities = 48/172 (27%), Positives = 90/172 (52%), Gaps = 17/172 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 117 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 173

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              ++ +  + APEIM         Y+  +D+W++G    EL  G+  F        L  
Sbjct: 174 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 229

Query: 121 IVR---NPPPGLYR--ASNWSQHYVDFIAECLEKNPEH-----RPYMSELLE 162
           I+R    P   L +  +S  +++Y+  + +  + N  +      P   +LLE
Sbjct: 230 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLE 281

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 77.4 bits (191), Expect = 9e-16
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 36/196 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +    +   + +++  + + H +++IHRD++  N+L+++ G +K+ DFG +R        
Sbjct: 97  LPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPAS 156

Query: 61  KKTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
             T   +  W  APE++         Y   +DVWA+G    EL DG+P F          
Sbjct: 157 PLTDYVATRWYRAPELLVGDTN----YGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLY 212

Query: 111 -------DMHP-------TRALFQIVRNPPPG-------LYRASNWSQHYVDFIAECLEK 149
                   + P       +   F  V  P P         Y     S   +DF+  CL  
Sbjct: 213 LIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGK-VSSPALDFLKACLRM 271

Query: 150 NPEHRPYMSELLEHPF 165
           +P+ R    ELL+HP+
Sbjct: 272 DPKERLTCDELLQHPY 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 76.7 bits (189), Expect = 9e-16
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-- 68
            ++   M +L  N  IHRDL   N L+ +D  VK+ DFGL+R   +  D+  +  G+   
Sbjct: 107 SDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLD--DQYTSSQGTKFP 164

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPP 126
             W  PE+          + ++ DVW+ G+   E+  +GK P+E      +  ++V +  
Sbjct: 165 VKWAPPEVFDYSR-----FSSKSDVWSFGVLMWEVFSEGKMPYE----RFSNSEVVESVS 215

Query: 127 PG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            G  LYR           +  C  + PE RP   +LL 
Sbjct: 216 AGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLS 253

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 17/156 (10%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM +L  ++VIHRDL   N L+ ++  VK+ DFG++R   +  D+  +  G+    
Sbjct: 108 DVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLD--DQYTSSTGTKFPV 165

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPP 127
            W +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V     
Sbjct: 166 KWSSPEVFSFSK-----YSSKSDVWSFGVLMWEVFSEGKTPYEN----RSNSEVVETINA 216

Query: 128 G--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           G  LY+    SQ   + +  C ++ PE RP  S LL
Sbjct: 217 GFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLL 252

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 22/161 (13%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           +I  GM +L   + IHRDL   N+L+ ++   KI DFGL+R   +  D+     G+    
Sbjct: 111 QIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIED--DEYTAREGAKFPI 168

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPP 127
            W APE    G      +  + DVW+ GI   E+   G+ P+  M     L Q+ R    
Sbjct: 169 KWTAPEAANYGR-----FTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERG--- 220

Query: 128 GLYR---ASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
             YR     N  +   D + +C +K+PE RP   Y+   LE
Sbjct: 221 --YRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLE 259

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 28/159 (17%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-SWMAP 73
           GM FL     IHRDL   NVL+T+D  +KI DFGL+R+  +    +KT  G  P  WMAP
Sbjct: 144 GMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAP 203

Query: 74  EIMRCGHKEVDGYDNRI-----DVWALGITAIE---LGDGKPPFEDMHPTRALFQIVRNP 125
           E +           +R+     DVW+ G+   E   LG G P     +P   + ++ +  
Sbjct: 204 EAL----------FDRVYTHQSDVWSFGVLLWEIFTLG-GSP-----YPGIPVEELFKLL 247

Query: 126 PPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             G  + +  N +Q     + +C  + P  RP   +L+E
Sbjct: 248 KEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVE 286

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 39/205 (19%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS----------- 51
           E+   F + E++  +  +H+   IHRD++  N+L+  DG +K+ DFGL            
Sbjct: 100 EETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREY 159

Query: 52  ------------RETANTFDKKKTF------LGSPSWMAPEIMRCGHKEVDGYDNRIDVW 93
                              D K+        +G+P ++APE++R        Y    D W
Sbjct: 160 YLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLR-----GTPYGLECDWW 214

Query: 94  ALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASN--WSQHYVDFIAECLEKNP 151
           +LG+   E+  G PPF          +I+ N    L    +   S   +D I   L  +P
Sbjct: 215 SLGVILYEMLYGFPPFYSDTLQETYNKII-NWKESLRFPPDPPVSPEAIDLICRLL-CDP 272

Query: 152 EHR-PYMSELLEHPFITSLPENDLH 175
           E R     E+  HPF   +   +L 
Sbjct: 273 EDRLGSFEEIKSHPFFKGIDWENLR 297

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 75.8 bits (186), Expect = 5e-15
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 12/176 (6%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI + + +LH  ++++RDL+  N+LL   G + + DFGL +E         
Sbjct: 95  EPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTS 154

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF G+P ++APE++   HK+   YD  +D W LG    E+  G PPF   +       I+
Sbjct: 155 TFCGTPEYLAPEVL---HKQ--PYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL 209

Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHR----PYMSELLEHPFITSLPENDL 174
             P       +N ++H ++ +   L+K+   R        E+  H F + +  +DL
Sbjct: 210 NKPLQLKPNITNSARHLLEGL---LQKDRTKRLGAKDDFMEIKNHIFFSPINWDDL 262

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 74.2 bits (183), Expect = 9e-15
 Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E  +   ++ ++ G+ ++H N ++HRDL+ +N+L++ DG +KI DFGL+R  +    + 
Sbjct: 97  PEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRL 156

Query: 62  KTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   +  W  APE++    K    YD  +D+WA+G    EL +G P F
Sbjct: 157 YSHQVATRWYRAPELLYGARK----YDPGVDLWAVGCIFAELLNGSPLF 201

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 6/109 (5%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  +  ++ +++ G+ +LHEN +IHRDL+ SN+LLT  G +KI DFGL+R       K 
Sbjct: 106 SESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLP-AKP 164

Query: 62  KTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            T      W  APE++  G      Y   ID+WA+G    EL   KP  
Sbjct: 165 MTPKVVTLWYRAPELL-LGCTT---YTTAIDMWAVGCILAELLAHKPLL 209

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-SWMAP 73
           GM +L   + IHRDL   N L+ ++  +KI DFG+SRE           L   P  W AP
Sbjct: 105 GMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAP 164

Query: 74  EIMRCGHKEVDGYDNRIDVWALGITAIE---LGDGKPPFEDMHPTRALFQIVRN---PPP 127
           E +  G      Y +  DVW+ GI   E   LGD   P+  M   +   +I      P P
Sbjct: 165 EALNYGR-----YTSESDVWSYGILLWETFSLGDT--PYPGMSNQQTRERIESGYRMPAP 217

Query: 128 GLYRASNWSQHYVDFIAE-CLEKNPEHRPYMSELLE 162
            L          +  +   C   +PE+RP  SE+  
Sbjct: 218 QL------CPEEIYRLMLQCWAYDPENRPSFSEIYN 247

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 32/164 (19%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----DK 60
            +  +  ++  GM +L E + IHRDL   N+L+ +D   K+ DFGL+R          DK
Sbjct: 105 SLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDK 164

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALF 119
           K  +     W APE    G      +  + DVW+ GI   E+   G+ P+  M+      
Sbjct: 165 KIPY----KWTAPEAASHGT-----FSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYD 215

Query: 120 QIVRN---P-----PPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
           QI      P     P  +Y+           + EC    PE RP
Sbjct: 216 QITAGYRMPCPAKCPQEIYK----------IMLECWAAEPEDRP 249

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 35/191 (18%)

Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFL 65
           +  ++ ++++G+  LH+N ++HRDL+ SN+LL   G +KI DFGL+RE  +   K  T L
Sbjct: 108 VKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL-KPYTQL 166

Query: 66  GSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR- 123
               W  APE++  G KE   Y   ID+W++G    EL   KP F        L +I + 
Sbjct: 167 VVTLWYRAPELL-LGAKE---YSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKL 222

Query: 124 -----------------------NPPPGL-----YRASNWSQHYVDFIAECLEKNPEHRP 155
                                     P       + A + S +  D +   L  +P  R 
Sbjct: 223 LGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRI 282

Query: 156 YMSELLEHPFI 166
              + L+HP+ 
Sbjct: 283 SAEDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 37/195 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + +Q I + L +I+ G+ ++H   V+HRDL+ SN+L+ ++ ++KI DFGL+R      D 
Sbjct: 105 LEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQ----DP 160

Query: 61  KKT-FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           + T ++ +  + APEIM    K    YD  +D+W+ G    E+ +GKP F          
Sbjct: 161 QMTGYVSTRYYRAPEIMLTWQK----YDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFS 216

Query: 120 QIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEKNP 151
            I                             R P P   +  N     +D + + L  +P
Sbjct: 217 IITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDP 276

Query: 152 EHRPYMSELLEHPFI 166
           + R   +E L HP++
Sbjct: 277 QKRISAAEALAHPYL 291

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 74.3 bits (182), Expect = 2e-14
 Identities = 42/147 (28%), Positives = 85/147 (57%), Gaps = 14/147 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S++H+ F++ +++ G+ ++H   +IHRDL+ SNV + +D E++I+DFGL+R+     D+
Sbjct: 115 LSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQAD---DE 171

Query: 61  KKTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTR 116
              ++ +  + APEIM    H     Y+  +D+W++G    EL  GK  F   + +   +
Sbjct: 172 MTGYVATRWYRAPEIMLNWMH-----YNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLK 226

Query: 117 ALFQIVRNPPPGLYR--ASNWSQHYVD 141
            + ++V  P P + +  +S  ++ Y+ 
Sbjct: 227 RIMEVVGTPSPEVLKKISSEHARKYIQ 253

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 45/203 (22%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + + H  +I+ +++  + ++H  +VIHRDL+ SN+LL  D  VK+ DFGL+R    +  +
Sbjct: 104 LEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLAR----SLSE 159

Query: 61  KKTFLGSPS--------WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-- 109
            +    +P         W  APEI+    +    Y   +D+W++G    E+  GKP F  
Sbjct: 160 LEENPENPVLTDYVATRWYRAPEILLGSTR----YTKGVDMWSVGCILGEMLLGKPLFPG 215

Query: 110 -------------------EDMHPTRALF--QIVRNPPPGLYRA-----SNWSQHYVDFI 143
                              ED+   ++ F   ++ + P    +         S   +D +
Sbjct: 216 TSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLL 275

Query: 144 AECLEKNPEHRPYMSELLEHPFI 166
            + L  NP  R    E LEHP++
Sbjct: 276 KKLLVFNPNKRLTAEEALEHPYV 298

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKK 61
           E    F L E++  +  +H+   +HRD++  NVL+ + G +K+ DFG + R TAN     
Sbjct: 101 EDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNS 160

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           K  +G+P ++APE++   + +  G Y    D W+LG+ A E+  G+ PF +    +    
Sbjct: 161 KLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNN 220

Query: 121 IVRNPP----PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
           I+        P   +    S  ++D I + L    + R     L  HPF + +  N++
Sbjct: 221 IMNFQRFLKFPEDPKV---SSDFLDLI-QSLLCGQKERLGYEGLCCHPFFSKIDWNNI 274

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           EI  GM +L     +HRDL   N ++ +D  VKI DFG++R+   T   +K   G  P  
Sbjct: 127 EIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 186

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIEL 102
           WMAPE ++      DG +  + DVW+ G+   E+
Sbjct: 187 WMAPESLK------DGVFTTKSDVWSFGVVLWEM 214

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 73.1 bits (179), Expect = 3e-14
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  N    KKT  G     
Sbjct: 142 QVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVK 201

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   LF++++     
Sbjct: 202 WMAPEAL---FDRV--YTHQSDVWSFGVLLWEIFTLGGSPYPGI-PVEELFKLLKEGHR- 254

Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE-HPFITSLPENDLHL 176
           + + +N +      + EC    P  RP   +L+E    + ++   D +L
Sbjct: 255 MDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTSTDEYL 303

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 14/158 (8%)

Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +E+ I  I  +++  + +LH E  ++HRDL  +N++L +D +V I DFGL+++      K
Sbjct: 111 TEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQK-QPESK 169

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + +G+  +  PEI++      + Y  + DVWA G    ++   +PPF   +      +
Sbjct: 170 LTSVVGTILYSCPEIVKN-----EPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATK 224

Query: 121 IVRNPPPGLYRASN---WSQHYVDFIAECLEKNPEHRP 155
           IV      +Y       +S+   D I  CL  + E RP
Sbjct: 225 IVE----AVYEPLPEGMYSEDVTDVITSCLTPDAEARP 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 52/208 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I   + +++ G+ +LHENH++HRD++ +N+L+   G +KI DFGL+R     +D 
Sbjct: 112 LTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLAR----PYDG 167

Query: 61  KKTFLGSPSWM---------------APEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
                                      PE++  G +    Y   +D+W +G    E+   
Sbjct: 168 PPPNPKGGGGGGTRKYTNLVVTRWYRPPELL-LGERR---YTTAVDIWGIGCVFAEMFTR 223

Query: 106 KPPFE---DMHPTRALFQIVRNPP----------PGLYRASNWSQHY------------- 139
           +P  +   D+     +F++   P           PG     +   +Y             
Sbjct: 224 RPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPG-CEGVHSFTNYPRTLEERFGKLGP 282

Query: 140 --VDFIAECLEKNPEHRPYMSELLEHPF 165
             +D +++ L  +P  R   S+ LEHP+
Sbjct: 283 EGLDLLSKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 72.7 bits (178), Expect = 4e-14
 Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 12/177 (6%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R   +    KKT  G     
Sbjct: 142 QVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVK 201

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMAPE +      V  Y ++ DVW+ GI   E+   G  P+  + P   LF+++R     
Sbjct: 202 WMAPEAL---FDRV--YTHQSDVWSFGILMWEIFTLGGSPYPGI-PVEELFKLLREGHR- 254

Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE--HPFITSLPENDLHLSTVNCQY 183
           + + SN +      + EC    P  RP   +L+E     + ++ E  L LS    QY
Sbjct: 255 MDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAVSEEYLDLSMPFEQY 311

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 25/169 (14%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS-- 69
           +I  GM +L     IHRDL   N+L+  +  VKI DFGL++      DK   ++  P   
Sbjct: 117 QICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAK--VLPEDKDYYYVKEPGES 174

Query: 70  ---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-----GDGKPPFEDM------HPT 115
              W APE +R        + +  DVW+ G+T  EL         PP E +         
Sbjct: 175 PIFWYAPECLR-----TSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQ 229

Query: 116 RALFQIVR--NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             + +++        L R  +      D +  C E  P+ RP  ++L+ 
Sbjct: 230 MIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLIL 278

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 71.4 bits (175), Expect = 6e-14
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFD 59
           + E  I     +I+  +  +H   ++HRDL+  N+LL K   V KI DFG+S+  + +  
Sbjct: 98  LDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILS-SKS 156

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K  T +G+P +++PE+  C   E   Y+ + D+WALG    EL   K  FE  +    + 
Sbjct: 157 KAYTVVGTPCYISPEL--C---EGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVL 211

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +I+      +  +  +S      I   L  +P  RP +S+++  P  
Sbjct: 212 KIMSGTFAPI--SDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 71.3 bits (175), Expect = 6e-14
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 32/171 (18%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
            Q + F L ++  GM +L E + +HRDL   NVL+++D   K+ DFGL++E +   D  K
Sbjct: 102 AQQLGFAL-DVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGK 160

Query: 63  TFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
                P  W APE +R   K+   +  + DVW+ GI   E+   G+ P+  + P + +  
Sbjct: 161 L----PVKWTAPEALR--EKK---FSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDVVP 210

Query: 121 IVRN------P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            V        P   PP +Y            + +C E +P  RP   +L E
Sbjct: 211 HVEKGYRMEAPEGCPPEVY----------KVMKDCWELDPAKRPTFKQLRE 251

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 32/193 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I  I+ + +  + F H+++ IHRD++  N+L+TK G++K+ DFG +R      D 
Sbjct: 97  VPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD 156

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP------------- 107
              ++ +  + APE++  G  +   Y   +DVWA+G    EL  G+P             
Sbjct: 157 YTDYVATRWYRAPELL-VGDTQ---YGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYL 212

Query: 108 ---PFEDMHP-------TRALFQIVRNPPPGLY-----RASNWSQHYVDFIAECLEKNPE 152
                 D+ P       T   F+ +  P P        +  N S   + F+  CL+ +P 
Sbjct: 213 IRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPT 272

Query: 153 HRPYMSELLEHPF 165
            R    ELLEHP+
Sbjct: 273 ERLSCEELLEHPY 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 71.2 bits (174), Expect = 7e-14
 Identities = 41/156 (26%), Positives = 82/156 (52%), Gaps = 14/156 (8%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++ + +  +H   V+HRD++ +NV +T  G VK+ D GL R  ++      + +G+P +M
Sbjct: 114 QLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYM 173

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-EDMHPTRALFQIVRN---PP- 126
           +PE +   H+  +GY+ + D+W+LG    E+   + PF  D     +L Q +     PP 
Sbjct: 174 SPERI---HE--NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPL 228

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           P      ++S+   + ++ C+  +P+ RP +  + +
Sbjct: 229 PT----EHYSEKLRELVSMCIYPDPDQRPDIGYVHQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           + +++  GM +L  N  IHRDL   N L++  G VK+ DFG++R   +  D+  +  G+ 
Sbjct: 105 MCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLD--DEYTSSSGAK 162

Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
               W  PE+          Y ++ DVW+ G+   E+  +GK PFE     ++ +++V  
Sbjct: 163 FPVKWSPPEVF-----NFSKYSSKSDVWSFGVLMWEVFTEGKMPFE----KKSNYEVVEM 213

Query: 125 PPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              G  LYR    S    + +  C  + PE RP  +ELL 
Sbjct: 214 ISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLR 253

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 71.6 bits (175), Expect = 9e-14
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    KKT  G     
Sbjct: 145 QVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVK 204

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   LF++++     
Sbjct: 205 WMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEELFKLLKEGHR- 257

Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           + + +N +      + +C    P HRP   +L+E
Sbjct: 258 MDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVE 291

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 29/184 (15%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-----------------RET 54
           E +  + +LH   ++HRDL+  N+L+T  G +K+ DFGLS                 ++T
Sbjct: 109 ETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDT 168

Query: 55  ANTFDKKKTFLGSPSWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
               DK+    G+P ++APE I+R       GY   +D WA+GI   E   G  PF    
Sbjct: 169 REFLDKQ--VCGTPEYIAPEVILR------QGYGKPVDWWAMGIILYEFLVGCVPFFGDT 220

Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS---ELLEHPFITSLP 170
           P     Q++ +                D I+  L +NP  R       E+ +H F   L 
Sbjct: 221 PEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLD 280

Query: 171 ENDL 174
            N L
Sbjct: 281 WNGL 284

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-- 68
           K++  GM +L     IHRDL   N L+   G VK+ DFGLSR   +  D+  + +GS   
Sbjct: 107 KDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLD--DEYTSSVGSKFP 164

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPP 126
             W  PE++         + ++ DVWA G+   E+   GK P+E  + +  + ++ +   
Sbjct: 165 VRWSPPEVLL-----YSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLR 219

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             LYR    S+     +  C  +  E RP   +LL
Sbjct: 220 --LYRPHLASEKVYAIMYSCWHEKAEERPTFQQLL 252

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 53/214 (24%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  +  IL +I+ G+  LH+ + +HRDL  +N+ +   G  KI DFGL+R        
Sbjct: 116 LTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYS 175

Query: 61  KKTFLGSPS--------------WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK 106
                                  + APE++    K    Y   +D+W++G    EL  GK
Sbjct: 176 DTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEK----YHFAVDMWSVGCIFAELLTGK 231

Query: 107 PPFEDMHPTRAL---FQIVRNPPPGLYRASNWSQHY------------------------ 139
           P F   +    L   F+++  P        NW Q                          
Sbjct: 232 PLFPGENEIDQLGRIFELLGTPNE-----DNWPQAKKLPLYTEFTPRKPKDLKTIFPNAS 286

Query: 140 ---VDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
              +D +   L+ NP  R    E L+H +  S P
Sbjct: 287 DDAIDLLQSLLKLNPLERISAKEALKHEYFKSDP 320

Length = 335

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 70.1 bits (171), Expect = 2e-13
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ + + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 110 QIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKW 169

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPT---RALFQIVRNPP 126
            APE +  G      +  + DVW+ GI  +E+   G+ P+  M      RAL +  R P 
Sbjct: 170 TAPEAINFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP- 223

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
               R  N  +   + +  C +  PE RP   Y+  +L+
Sbjct: 224 ----RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLD 258

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 62/211 (29%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE----VKIVDFGLSRETANTFDK--KK 62
           +L +I+ G+ +LH N V+HRDL+ +N+L+  +G     VKI D GL+R     F+   K 
Sbjct: 113 LLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLAR----LFNAPLKP 168

Query: 63  TFLGSP----SWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDM- 112
                P     W  APE++  G +    Y   ID+WA+G    EL   +P F      + 
Sbjct: 169 LADLDPVVVTIWYRAPELL-LGARH---YTKAIDIWAIGCIFAELLTLEPIFKGREAKIK 224

Query: 113 ------------------HPT----------------RALFQIVRNPPPGLY----RASN 134
                              PT                   F+    P   L     +   
Sbjct: 225 KSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKK 284

Query: 135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
                 D + + LE +P  R    E LEHP+
Sbjct: 285 PDSQGFDLLRKLLEYDPTKRITAEEALEHPY 315

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 38/184 (20%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE---TANTFDKKKTFLGSP 68
           +++ G+ F HEN V+HRDL+  N+L+ K GE+K+ DFGL+R      NTF  +   L   
Sbjct: 108 QLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTL--- 164

Query: 69  SWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-----EDM---------H 113
            W  AP+++  G +    Y   ID+W++G    E+  G+P F     ED           
Sbjct: 165 -WYRAPDVL-LGSRT---YSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGT 219

Query: 114 PTRALFQIVRNPP---PGLYRASNWSQHY---------VDFIAECLEKNPEHRPYMSELL 161
           PT + +  +   P   P   R                 +D +   L+ NPE R    + L
Sbjct: 220 PTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDAL 279

Query: 162 EHPF 165
           +HP+
Sbjct: 280 QHPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 69.6 bits (170), Expect = 3e-13
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 11/124 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE+ + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL    A  F KK
Sbjct: 95  SEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL----ACDFSKK 150

Query: 62  KTF--LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K    +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF   H T+   
Sbjct: 151 KPHASVGTHGYMAPEVLQKG----TAYDSSADWFSLGCMLFKLLRGHSPFRQ-HKTKDKH 205

Query: 120 QIVR 123
           +I R
Sbjct: 206 EIDR 209

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL    A  F KK
Sbjct: 95  SEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL----ACDFSKK 150

Query: 62  KTF--LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K    +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF   H T+   
Sbjct: 151 KPHASVGTHGYMAPEVLQKG----VAYDSSADWFSLGCMLFKLLRGHSPFRQ-HKTKDKH 205

Query: 120 QIVR 123
           +I R
Sbjct: 206 EIDR 209

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 69.7 bits (170), Expect = 4e-13
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    KKT  G     
Sbjct: 148 QVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK 207

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP 127
           WMAPE +       D  Y ++ DVW+ G+   E+   G  P+  + P   LF++++    
Sbjct: 208 WMAPEAL------FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-PVEELFKLLKEGHR 260

Query: 128 GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            + + SN +      + +C    P  RP   +L+E
Sbjct: 261 -MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 294

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 69.6 bits (170), Expect = 6e-13
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 39/203 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE  I F++ +++ G+ ++H   +IHRDL+  N+ + +D E+KI+DFGL+R+T    D 
Sbjct: 115 LSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQT----DS 170

Query: 61  KKTFLGSPSWM-APE-IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           + T      W  APE I+   H     Y   +D+W++G    E+  GKP F+       L
Sbjct: 171 EMTGYVVTRWYRAPEVILNWMH-----YTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQL 225

Query: 119 FQI--VRNPPPGLYRA---SNWSQHYVDFIAECLEK-----------------------N 150
            +I  V   P   +     S  +++YV  +    +K                       +
Sbjct: 226 MEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLD 285

Query: 151 PEHRPYMSELLEHPFITSLPEND 173
            E R   +E L HP+     + +
Sbjct: 286 AESRITAAEALAHPYFEEFHDPE 308

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 68.1 bits (166), Expect = 6e-13
 Identities = 49/149 (32%), Positives = 65/149 (43%), Gaps = 16/149 (10%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-TFDKKKTFLGSP-SWMAP 73
           GM +L   H IHRDL   N L+T+   +KI DFG+SRE  +  +         P  W AP
Sbjct: 106 GMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAP 165

Query: 74  EIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM--HPTR-ALFQIVRNPPPGL 129
           E +  G      Y +  DVW+ GI   E    G  P+ ++    TR A+ Q VR P P  
Sbjct: 166 EALNYGR-----YSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCP-- 218

Query: 130 YRASNWSQHYVDFIAECLEKNPEHRPYMS 158
                        +  C E +P  RP  S
Sbjct: 219 ---ELCPDAVYRLMERCWEYDPGQRPSFS 244

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 69.1 bits (169), Expect = 7e-13
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 19/157 (12%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET---ANTFDKKKTFLGSP 68
           ++  GM FL   + IHRDL   NVLLT    VKI DFGL+R+    +N   K    L   
Sbjct: 149 QVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARL-PV 207

Query: 69  SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPP 126
            WMAPE I  C       Y    DVW+ GI   E+   G  P+  M      +++++   
Sbjct: 208 KWMAPESIFNC------VYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEG- 260

Query: 127 PGLYRASN---WSQHYVDFIAECLEKNPEHRPYMSEL 160
              YR +          D +  C + +P  RP   ++
Sbjct: 261 ---YRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQI 294

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 68.4 bits (167), Expect = 8e-13
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 22/168 (13%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL--SRETANTFDKKKTFLGSPS 69
           E+ +G+++LH+   IH DL   N  LT D  VKI D+GL   +   + +  K        
Sbjct: 108 EVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLR 167

Query: 70  WMAPEIMRCGHKEVDGYD--NRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN-- 124
           W+APE++    +++   D   + ++W+LG+T  EL      P+ D+   + L Q+VR   
Sbjct: 168 WLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQD 227

Query: 125 ---PPPGLYRASNWSQHYVDFIAECLE---KNPEHRPYMSE---LLEH 163
              P P L         Y D   E ++    +PE RP   E   LL +
Sbjct: 228 IKLPKPQL------DLKYSDRWYEVMQFCWLDPETRPTAEEVHELLTY 269

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 68.1 bits (166), Expect = 9e-13
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           ++  GM ++   + IHRDLR +N+L+      KI DFGL+R    N +  ++       W
Sbjct: 110 QVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKW 169

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M+    L Q+ R    P 
Sbjct: 170 TAPEAALYGR-----FTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPC 224

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
           P        S H  + + +C +K+PE RP   Y+   LE
Sbjct: 225 PQ---DCPISLH--ELMLQCWKKDPEERPTFEYLQSFLE 258

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 68.2 bits (166), Expect = 9e-13
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 18/162 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 110 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 169

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 170 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 224

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPF 165
           P         +   D + +C  K PE RP   Y+   LE  F
Sbjct: 225 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 261

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 8/146 (5%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++ + +  +H   V+HRD++ +NV +T  G VK+ D GL R  ++      + +G+P +M
Sbjct: 114 QLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYM 173

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRALFQIVRNPPPGL 129
           +PE +   H+  +GY+ + D+W+LG    E+   + PF  + M+      +I +   P L
Sbjct: 174 SPERI---HE--NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPL 228

Query: 130 YRASNWSQHYVDFIAECLEKNPEHRP 155
             + ++S+     +  C+  +PE RP
Sbjct: 229 -PSDHYSEELRQLVNMCINPDPEKRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 31/175 (17%)

Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTF 58
           + + F  +++  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ +
Sbjct: 116 KDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYY 175

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTR 116
            K    +    WM PE        +DG + ++ DVW+ G+   E+   G  P+       
Sbjct: 176 RKGGRAMLPIKWMPPEAF------LDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE 229

Query: 117 ALFQIVR----NPPPG----LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            +  +      +PP G    +YR           + +C +  PE RP  + +LE 
Sbjct: 230 VMEFVTGGGRLDPPKGCPGPVYR----------IMTDCWQHTPEDRPNFATILER 274

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 26/166 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L E + +HRDL   N+L+  +   K+ DFGLSR   ++     T  G  
Sbjct: 111 MLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKI 170

Query: 69  S--WMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQI---V 122
              W APE +         + +  DVW+ GI   E +  G+ P+ DM     +  +    
Sbjct: 171 PIRWTAPEAIAYRK-----FTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGY 225

Query: 123 RNPPP-----GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           R PPP      LY+           + +C +K+   RP  S+++  
Sbjct: 226 RLPPPMDCPSALYQ----------LMLDCWQKDRNERPTFSQIVST 261

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 43/214 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  H+   L +I+ G+ +LH   ++HRD++  N+L+  +  +KI DFGL+R      D+
Sbjct: 100 LSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLAR--VEEPDE 157

Query: 61  KKTF---LGSPSWMAPEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGK---------- 106
            K     + +  + APEI M   H     Y + +D+W++G    EL   +          
Sbjct: 158 SKHMTQEVVTQYYRAPEILMGSRH-----YTSAVDIWSVGCIFAELLGRRILFQAQSPIQ 212

Query: 107 -----------PPFEDMHPTR--ALFQIVRNPP-----PGLYRASNWSQH-YVDFIAECL 147
                      P  E M      A   I+R P      P LY  S+ + H  V  +   L
Sbjct: 213 QLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRML 272

Query: 148 EKNPEHRPYMSELLEHPFITSLPENDLHLSTVNC 181
             +P+ R   ++ L HP+   L E  L   T  C
Sbjct: 273 VFDPDKRISAADALAHPY---LDEGRLRYHTCMC 303

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 11/113 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR----ETANT 57
           SE HI   +K+++ G+ + H+ + +HRD++ SN+LL   G++K+ DFGL+R    E +  
Sbjct: 114 SEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRP 173

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           +  K   L    W  P  +  G +    Y   IDVW+ G    EL   KP F+
Sbjct: 174 YTNKVITL----WYRPPELLLGEER---YGPAIDVWSCGCILGELFTKKPIFQ 219

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 68.5 bits (167), Expect = 2e-12
 Identities = 52/159 (32%), Positives = 71/159 (44%), Gaps = 17/159 (10%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPS 69
           ++  GM FL     IHRDL   N+LL+++  VKI DFGL+R+     D  +K        
Sbjct: 187 QVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK 246

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHP----TRALFQIVRN 124
           WMAPE +      V  Y  + DVW+ G+   E+   G  P+  +       R L +  R 
Sbjct: 247 WMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM 301

Query: 125 PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 302 RAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 335

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 37/198 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET-ANTFD 59
            +   I  ++K ++ G+ ++H N ++HRD++ +N+L+TKDG +K+ DFGL+R    +   
Sbjct: 116 FTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNS 175

Query: 60  KKKTFLGSPS--WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
           K   +       W   PE++  G ++   Y   ID+W  G    E+    P  +      
Sbjct: 176 KPNRYTNRVVTLWYRPPELL-LGERD---YGPPIDMWGAGCIMAEMWTRSPIMQGNTEQH 231

Query: 117 ALFQIVR-----NP-----------------PPGLYR-------ASNWSQHYVDFIAECL 147
            L  I +      P                 P G  R             H +D I + L
Sbjct: 232 QLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLL 291

Query: 148 EKNPEHRPYMSELLEHPF 165
             +P  R      L H F
Sbjct: 292 VLDPAKRIDADTALNHDF 309

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN--TFDK 60
           E  +  +  +I+  +  +H   ++HRDL+ +N+ L   G +K+ DFG S++ ++  + D 
Sbjct: 168 EYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDV 227

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             +F G+P ++APE+      E   Y  + D+W+LG+   EL     PF+       + Q
Sbjct: 228 ASSFCGTPYYLAPELW-----ERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQ 282

Query: 121 IVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           ++     P     S+  +  +D +   L KNP  RP   +LL   F+
Sbjct: 283 VLYGKYDPFPCPVSSGMKALLDPL---LSKNPALRPTTQQLLHTEFL 326

Length = 478

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 10/112 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NT 57
           MS  ++   L +I+ G+ + H   V+HRDL+  N+L+ + GE+K+ DFGL+R  +    T
Sbjct: 101 MSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKT 160

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           +  +   L    W  P  +  G  E   Y  +ID+W +G    E+  G+P F
Sbjct: 161 YSNEVVTL----WYRPPDVLLGSSE---YSTQIDMWGVGCIFFEMASGRPLF 205

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 127 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 186

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP 127
           WM+PE ++      DG +    DVW+ G+   E+    + P++ M       Q++R    
Sbjct: 187 WMSPESLK------DGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE----QVLRFVME 236

Query: 128 G--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           G  L +  N      + +  C + NP+ RP   E++
Sbjct: 237 GGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 272

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKKTFLGSPS 69
           +I  GM +L E  ++HRDL   NVL+ +  ++KI DFGLSR+    +++ K+        
Sbjct: 135 QISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVK 194

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMA E +   H     Y  + DVW+ G+   E+   G  P+  + P R LF +++     
Sbjct: 195 WMAIESL-FDHI----YTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER-LFNLLKTGYR- 247

Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           + R  N S+   + +  C ++ P+ RP  +++
Sbjct: 248 MERPENCSEEMYNLMLTCWKQEPDKRPTFADI 279

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+   + IHRDLR +N+L+++    KI DFGL+R   +     +     P  W
Sbjct: 110 QIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKW 169

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDM-HP--TRALFQIVRNPP 126
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P   + L +  R P 
Sbjct: 170 TAPEAINYG-----TFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPR 224

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
           P      N  +   + +  C ++ PE RP   Y+  +LE
Sbjct: 225 P-----DNCPEELYELMRLCWKEKPEERPTFEYLRSVLE 258

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 66.2 bits (161), Expect = 3e-12
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           ++Q + F L +   GM +L   + IHRDL   N L+ ++  +KI DFG+SR+  +     
Sbjct: 92  TKQLVKFAL-DAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS 150

Query: 62  KTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALF 119
                 P  W APE +  G      Y +  DVW+ GI   E    G  P+  M   +A  
Sbjct: 151 SGLKQIPIKWTAPEALNYGR-----YSSESDVWSYGILLWETFSLGVCPYPGMTNQQARE 205

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAE----CLEKNPEHRPYMSEL 160
           Q+ +      YR S   Q   D + +    C +  PE+RP  SEL
Sbjct: 206 QVEKG-----YRMSC-PQKCPDDVYKVMQRCWDYKPENRPKFSEL 244

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 67.0 bits (163), Expect = 3e-12
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 43/206 (20%)

Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NTFDK 60
            ++   L +++ G+ + H   V+HRDL+  N+L+ + GE+K+ DFGL+R  +    T+  
Sbjct: 104 HNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSN 163

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------EDMHP 114
           +   L    W  P  +  G  +   Y  +ID+W +G    E+  G+P F      E +H 
Sbjct: 164 EVVTL----WYRPPDILLGSTD---YSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLH- 215

Query: 115 TRALFQIVRNPP----PGL-----YRASNWSQHY---------------VDFIAECLEKN 150
              +F+I+  P     PG+     +++ N+ ++                 + +++ L+  
Sbjct: 216 --FIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFE 273

Query: 151 PEHRPYMSELLEHPFITSLPENDLHL 176
              R    E ++HP+   L E    L
Sbjct: 274 GRKRISAEEAMKHPYFHCLGERIHKL 299

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 17/139 (12%)

Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKK 61
            ++  ++ ++  GM +L   + +HRDL   NVLL      KI DFGLS+     +++ K 
Sbjct: 95  SNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKA 154

Query: 62  KTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALF 119
           ++    P  W APE +    K    + +R DVW+ GIT  E    G+ P++ M     + 
Sbjct: 155 RSAGKWPLKWYAPECINF-RK----FSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMS 209

Query: 120 QIVRNP--------PPGLY 130
            I +          PP +Y
Sbjct: 210 FIEQGKRLDCPAECPPEMY 228

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 53/165 (32%), Positives = 73/165 (44%), Gaps = 37/165 (22%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAP 73
           GM FL     IHRDL   N+LL+++  VKI DFGL+R+     D  +K        WMAP
Sbjct: 185 GMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 244

Query: 74  EIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF------EDM-----HPTRALFQI 121
           E +     +V  Y  + DVW+ G+   E+   G  P+      E+        TR     
Sbjct: 245 ESI---FDKV--YTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTR----- 294

Query: 122 VRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           +R P    P +Y            + +C   NPE RP  SEL+E 
Sbjct: 295 MRAPEYATPEIYSI----------MLDCWHNNPEDRPTFSELVEI 329

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKTFLG 66
           +I  GM +L E  ++HRDL   NVL+     VKI DFGL++     E     +  K  + 
Sbjct: 117 QIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPI- 175

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN 124
              WMA E +         Y ++ DVW+ G+T  EL   G  P+E + P   +  ++  
Sbjct: 176 --KWMALESILHRI-----YTHKSDVWSYGVTVWELMTFGAKPYEGI-PAVEIPDLLEK 226

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 65.8 bits (160), Expect = 4e-12
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM ++   + IHRDLR +N+L+  +   KI DFGL+R    N +  ++       W
Sbjct: 110 QIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKW 169

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 170 TAPEAALYGR-----FTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPC 224

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
           P   +    S H  + +  C +K+P+ RP   Y+   LE
Sbjct: 225 P---QGCPESLH--ELMKLCWKKDPDERPTFEYIQSFLE 258

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 22/172 (12%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T  + K    L    
Sbjct: 127 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 186

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP 127
           WMAPE ++      DG +    D+W+ G+   E+    + P++ +       Q+++    
Sbjct: 187 WMAPESLK------DGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNE----QVLKFVMD 236

Query: 128 GLY--RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           G Y  +  N  +   D +  C + NP+ RP   E++       L ++DLH S
Sbjct: 237 GGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN------LLKDDLHPS 282

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 67.0 bits (163), Expect = 6e-12
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 28/165 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET---ANTFDKKKTFLGSP 68
           ++  GM FL   + +HRDL   NVLL +   VKI DFGL+R+    +N   K  TFL   
Sbjct: 245 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFL-PV 303

Query: 69  SWMAPEIMRCGHKEVDGYDNRI----DVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
            WMAPE +         +DN      DVW+ GI   E+   G  P+  M      +  ++
Sbjct: 304 KWMAPESI---------FDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIK 354

Query: 124 NPPPGLYRAS---NWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
           +     YR +   + +Q   D + +C    PE RP   ++S+++E
Sbjct: 355 SG----YRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVE 395

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 67.0 bits (163), Expect = 6e-12
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET---ANTFDKKKTFLGSP 68
           ++  GM FL   + +HRDL   NVL+ +   VKI DFGL+R+    +N   K  TFL   
Sbjct: 247 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFL-PL 305

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP 127
            WMAPE +       + Y    DVW+ GI   E+   G  P+ ++ P    F    N   
Sbjct: 306 KWMAPESIFN-----NLYTTLSDVWSFGILLWEIFTLGGTPYPEL-PMNEQFY---NAIK 356

Query: 128 GLYRAS---NWSQHYVDFIAECLEKNPEHRPYMSELL 161
             YR +   + S    + + +C E+  E RP  S+L+
Sbjct: 357 RGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLV 393

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FD 59
           +S +    +  +I  GM  L     +HRDL   N L++   EVK+    LS++  N+ + 
Sbjct: 114 LSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYY 173

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRAL 118
           K +  L    W+APE ++      D +  + DVW+ G+   E+   G+ PF  +     L
Sbjct: 174 KLRNALIPLRWLAPEAVQ-----EDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVL 228

Query: 119 FQI----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            ++    +  P P               +  C   NP+ RP  SEL+
Sbjct: 229 NRLQAGKLELPVP-----EGCPSRLYKLMTRCWAVNPKDRPSFSELV 270

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 65.1 bits (158), Expect = 1e-11
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 40/199 (20%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET---ANTFDKK 61
           ++   L +++ G+ ++H+ +++HRDL+  N+L++  GE+K+ DFGL+R     ++T+  +
Sbjct: 104 NVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNE 163

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR----A 117
              L    W  P  +  G  E   Y   +D+W +G   +E+  G   F  M   +     
Sbjct: 164 VVTL----WYRPPDVLLGSTE---YSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLER 216

Query: 118 LFQIVRNPP----PG-------------LYRASNWSQ---------HYVDFIAECLEKNP 151
           +F ++  P     PG             LY   N  Q         H  D  ++ L+  P
Sbjct: 217 IFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFP 276

Query: 152 EHRPYMSELLEHPFITSLP 170
           ++R      L H + + LP
Sbjct: 277 KNRLSAQAALSHEYFSDLP 295

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 32/182 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           ++ +++ G+ FLH + V+HRDL+  N+L+T  G++K+ DFGL+R    +F    T +   
Sbjct: 115 MMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR--IYSFQMALTSVVVT 172

Query: 69  SWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE---DMHPTRALFQIVRN 124
            W  APE++         Y   +D+W++G    E+   KP F    D+     +  ++  
Sbjct: 173 LWYRAPEVLL-----QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGL 227

Query: 125 PPP-------GLYRASNWS------QHYV--------DFIAECLEKNPEHRPYMSELLEH 163
           P          L R +  S      + +V        D + +CL  NP  R      L H
Sbjct: 228 PGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH 287

Query: 164 PF 165
           P+
Sbjct: 288 PY 289

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 32/165 (19%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K  +    W 
Sbjct: 110 DVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV---KWT 166

Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP----- 125
           APE +R   K+   +  + DVW+ GI   E+   G+ P+  + P + +   V        
Sbjct: 167 APEALR--EKK---FSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDVVPRVEKGYKMDA 220

Query: 126 ----PPGLYRASNWSQHYVDFIAECLEKNPEHRPY---MSELLEH 163
               PP +Y          D + +C   +   RP    + E LEH
Sbjct: 221 PDGCPPVVY----------DVMKQCWHLDAATRPSFLQLREQLEH 255

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 55/168 (32%), Positives = 73/168 (43%), Gaps = 21/168 (12%)

Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTFDKKKTFLGSP 68
           ++I  GM +LH  H IHRDL   NVLL  D  VKI DFGL++     + + + +    SP
Sbjct: 114 QQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSP 173

Query: 69  S-WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL---GDGK--PP--FEDM-HPTRALF 119
             W A E +    KE        DVW+ G+T  EL    D K  PP  FE+M  P +   
Sbjct: 174 VFWYAVECL----KENKFSYAS-DVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQM 228

Query: 120 QIVR-----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            +VR          L    N  Q     +  C E   + RP    L+ 
Sbjct: 229 TVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP 276

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM ++   + IHRDLR +NVL+++    KI DFGL+R    N +  ++       W
Sbjct: 111 QIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 170

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTR---ALFQIVRNPP 126
            APE +  G      +  + DVW+ GI   E+   GK P+  M  +    AL +  R P 
Sbjct: 171 TAPEAINFG-----SFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMP- 224

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
               R  N      D +  C ++  E RP   Y+  +L+
Sbjct: 225 ----RMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLD 259

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q + F L ++  GM +L    ++HRDL   N+L+++DG  K+ DFGL+R  +   D  K 
Sbjct: 101 QLLQFSL-DVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKL 159

Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDM---HPTRALF 119
            +    W APE ++  HK+   + ++ DVW+ G+   E+   G+ P+  M        + 
Sbjct: 160 PV---KWTAPEALK--HKK---FSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVE 211

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           +  R  PP    A  +       +  C E  P+ RP   +L E
Sbjct: 212 KGYRMEPPEGCPADVYV-----LMTSCWETEPKKRPSFHKLRE 249

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 52/193 (26%)

Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +I+ G++F H   V+HRDL+  N+L+   G +K+ DFGL+R             G P 
Sbjct: 107 LYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARA-----------FGIPV 155

Query: 70  -----------WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                      + APE++    +    Y   +D+W++G    E+   KP F        L
Sbjct: 156 RVYTHEVVTLWYRAPEVLLGSPR----YSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQL 211

Query: 119 FQIVR---NPP----PGL-----YRAS--NWSQHYV------------DFIAECLEKNPE 152
           F+I R    P     PG+     Y+ +   W +  +            D + + L  +P 
Sbjct: 212 FRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPA 271

Query: 153 HRPYMSELLEHPF 165
            R    + L HP+
Sbjct: 272 KRISAKKALNHPY 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 39/203 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE  + +++ +++ G+ ++H   +IHRDL+  N+ + +D E+KI+DFGL+R      D 
Sbjct: 114 LSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHA----DA 169

Query: 61  KKTFLGSPSWM-APE-IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           + T      W  APE I+   H     Y+  +D+W++G    E+  GK  F+       L
Sbjct: 170 EMTGYVVTRWYRAPEVILNWMH-----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQL 224

Query: 119 FQIVR---NPPPGLYR------ASNW-------------------SQHYVDFIAECLEKN 150
            QI++    P P   +      A ++                   S   VD + + LE +
Sbjct: 225 TQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELD 284

Query: 151 PEHRPYMSELLEHPFITSLPEND 173
            + R   +E LEHP+  S  + D
Sbjct: 285 VDKRLTATEALEHPYFDSFRDAD 307

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 18/167 (10%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           +S      I K++  GM +L E   +HRDL   N L+ ++  VKI DFGLSR   +A+ +
Sbjct: 127 LSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY 186

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
              +       WM PE +       + Y    DVWA G+   E+   G  P+  M     
Sbjct: 187 KASENDAIPIRWMPPESIF-----YNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEV 241

Query: 118 LFQI----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           ++ +    V + P       N      + +  C  K P  RP  + +
Sbjct: 242 IYYVRDGNVLSCP------DNCPLELYNLMRLCWSKLPSDRPSFASI 282

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 25/181 (13%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E+ I  +  + +  +  LH        L   + LL  DG V       SR        
Sbjct: 14  LNEEEIWAVCLQCLGALRELHRQAKSGNILLTWDGLLKLDGSVAFKTPEQSRPD------ 67

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                  P +MAPE+++        Y  + D+++LGIT  E  D + P+ +     A+ +
Sbjct: 68  -------PYFMAPEVIQGQ-----SYTEKADIYSLGITLYEALDYELPYNEERELSAILE 115

Query: 121 IVRNPPPGL--YRASN---WSQHYV--DFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           I+ N  P       SN    S      DF+  C  + P+ R   +  L H         +
Sbjct: 116 ILLNGMPADDPRDRSNLEGVSAARSFEDFMRLCASRLPQRREAANHYLAHCRALFAETLE 175

Query: 174 L 174
           L
Sbjct: 176 L 176

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features. Length = 176

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           + +     +I  G++ LH   +++RD++  NVLL   G  ++ D GL+ E     D K  
Sbjct: 95  ERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELK---DGKTI 151

Query: 64  F--LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
               G+  +MAPEI++   +E   Y   +D +A+G +  E+  G+ PF+D     A  ++
Sbjct: 152 TQRAGTNGYMAPEILK---EEP--YSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEEL 206

Query: 122 VRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHR 154
            R        +   N+++   D     L K PE R
Sbjct: 207 KRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDR 241

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ +GM +L   + IHRDL   NVL+ ++   K+ DFGL+R       + +     P  W
Sbjct: 111 QVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKW 170

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE         + +  + DVW+ GI   E+   G+ P+  M     L Q+ +    P 
Sbjct: 171 TAPEAAL-----YNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPC 225

Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP 155
           P         +   D + +C +++P+ RP
Sbjct: 226 P-----PGCPKELYDIMLDCWKEDPDDRP 249

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 38/203 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++ +H  F L +++  + ++H  +V HRDL+  N+L   D ++KI DFGL+R   N  D 
Sbjct: 100 LTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFN--DT 157

Query: 61  KKT-----FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------ 109
                   ++ +  + APE+  CG      Y   ID+W++G    E+  GKP F      
Sbjct: 158 PTAIFWTDYVATRWYRAPEL--CG-SFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVV 214

Query: 110 ------EDM--HPTRALFQIVRNPPPGLY-------RASNWSQHY-------VDFIAECL 147
                  D+   P+      VRN     Y       +   +SQ +       +  +   L
Sbjct: 215 HQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLL 274

Query: 148 EKNPEHRPYMSELLEHPFITSLP 170
             +P+ RP   E L  P+   L 
Sbjct: 275 AFDPKDRPTAEEALADPYFKGLA 297

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 28/156 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NT 57
           MS  ++   + +++ G+ + H+  ++HRDL+  N+L+ + GE+K+ DFGL+R  +    T
Sbjct: 100 MSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKT 159

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------ED 111
           +  +   L    W  P  +  G  E   Y   ID+W +G    E+  G+P F      E+
Sbjct: 160 YSNEVVTL----WYRPPDVLLGSTE---YSTPIDMWGVGCILYEMATGRPMFPGSTVKEE 212

Query: 112 MHPTRALFQIVRNPP----PGL-----YRASNWSQH 138
           +H    +F+++  P     PG+     +R+  + Q+
Sbjct: 213 LH---LIFRLLGTPTEETWPGITSNEEFRSYLFPQY 245

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R+  N  D      G+    
Sbjct: 222 QVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN--DSNYVVKGNARLP 279

Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN- 124
             WMAPE I  C       Y    DVW+ GI   E+   G  P+  M      +++++  
Sbjct: 280 VKWMAPESIFNC------VYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEG 333

Query: 125 --------PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                    P  +Y          D +  C + +P  RP   ++++
Sbjct: 334 YRMLSPECAPSEMY----------DIMKSCWDADPLKRPTFKQIVQ 369

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 34/184 (18%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           ++++ + G+ FLH N ++HRDL+  N+L+T  G+VK+ DFGL+R    +     T +   
Sbjct: 113 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLAR--IYSCQMALTPVVVT 170

Query: 69  SWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP-------------------- 107
            W  APE++         Y   +D+W++G    E+   KP                    
Sbjct: 171 LWYRAPEVLL-----QSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGL 225

Query: 108 PFEDMHPT-----RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           P ED  P      R  F   R P P         +     + E L  NP  R      L+
Sbjct: 226 PPEDDWPRDVTLPRGAFS-PRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ 284

Query: 163 HPFI 166
           HPF 
Sbjct: 285 HPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 63.5 bits (154), Expect = 5e-11
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 27/163 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPS 69
           ++  GM FL     IHRDL   N+LL+++  VKI DFGL+R+     D  +K +      
Sbjct: 182 QVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLK 241

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR----- 123
           WMAPE +     +V  Y  + DVW+ G+   E+   G  P+  +       Q ++     
Sbjct: 242 WMAPESI---FDKV--YTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRM 296

Query: 124 ----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
               N  P +YR           +  C + +P+ RP  S L+E
Sbjct: 297 RAPENATPEIYR----------IMLACWQGDPKERPTFSALVE 329

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG--LSRETANTFDKKKTFL 65
           F L E++  +  +H+   +HRD++  NVLL K+G +++ DFG  L      T       +
Sbjct: 106 FYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQ-SNVAV 164

Query: 66  GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           G+P +++PEI++        Y    D W+LG+   E+  G+ PF
Sbjct: 165 GTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPF 208

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 37/206 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFD 59
           +SE+H    + +++ G+ ++H  +V+HRDL+ +NV + T+D  +KI DFGL+R     + 
Sbjct: 111 LSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYS 170

Query: 60  KKKTF---LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
            K      L +  + +P ++       + Y   ID+WA G    E+  GKP F   H   
Sbjct: 171 HKGYLSEGLVTKWYRSPRLLL----SPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELE 226

Query: 117 ALFQIVRNPP--------------PGLYRASNW-------------SQHYVDFIAECLEK 149
            +  I+ + P              P   R                 +   +DF+ + L  
Sbjct: 227 QMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTF 286

Query: 150 NPEHRPYMSELLEHPFIT--SLPEND 173
           NP  R    E L HP+++  S P ++
Sbjct: 287 NPMDRLTAEEALMHPYMSCYSCPFDE 312

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E+   F   EI  G+  LH   +++RDL+  N+LL   G ++I D GL+ E     +  +
Sbjct: 101 EERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG-ETIR 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
             +G+  +MAPE+++      + Y    D W LG    E+ +GK PF 
Sbjct: 160 GRVGTVGYMAPEVVKN-----ERYTFSPDWWGLGCLIYEMIEGKSPFR 202

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 30/191 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFD 59
           +  + I   + +++ G+   H++ V+HRDL+  N+L+ K   + KI D GL R  +    
Sbjct: 107 LPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVK 166

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
                + +  + APE++         Y   +D+W++G    E+   +P F      + L 
Sbjct: 167 SYTHEIVTLWYRAPEVLLGSTH----YSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLL 222

Query: 120 QIVR---NPP----PGLYRASNW------------------SQHYVDFIAECLEKNPEHR 154
            I +    P     PG+ +  +W                  S   +D + + L  +P  R
Sbjct: 223 HIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKR 282

Query: 155 PYMSELLEHPF 165
                 L HP+
Sbjct: 283 ISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 63.3 bits (154), Expect = 8e-11
 Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 33/164 (20%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D      G+    
Sbjct: 220 QVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMN--DSNYVVKGNARLP 277

Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN- 124
             WMAPE I  C       Y  + DVW+ GI   E+   GK P+  +      +++V+  
Sbjct: 278 VKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRG 331

Query: 125 --------PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                    PP +Y            +  C    P  RP  S++
Sbjct: 332 YQMSRPDFAPPEIYS----------IMKMCWNLEPTERPTFSQI 365

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFLGSP- 68
           GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+       T    P 
Sbjct: 110 GMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARD---IYDKEYYSVHNHTGAKLPV 166

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---TRALFQIVRN 124
            WMA E +     +   +  + DVW+ G+   EL   G PP+ D+     T  L Q  R 
Sbjct: 167 KWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRL 221

Query: 125 PPP-----GLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             P      LY          + +  C    PE RP  SEL
Sbjct: 222 LQPEYCPDPLY----------EVMLSCWHPKPEMRPTFSEL 252

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 27/167 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---RETANT 57
           ++E++I  ++ ++  GM +L E + +HRDL   NVLL      KI DFGLS       N 
Sbjct: 92  VTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY 151

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
           +  K        W APE M   +K    + ++ DVW+ G+   E    G+ P++ M    
Sbjct: 152 YKAKTHGKWPVKWYAPECMNY-YK----FSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNE 206

Query: 117 ALFQIVRNP--------PPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               I            PP +Y          D +  C     + RP
Sbjct: 207 VTQMIESGERMECPQRCPPEMY----------DLMKLCWTYGVDERP 243

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 38/186 (20%)

Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NTFDKKKTFLG 66
           L +++ G+ + H + V+HRDL+  N+L+ ++G +K+ DFGL+R       T+  +   L 
Sbjct: 105 LYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTL- 163

Query: 67  SPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-- 123
              W  APEI+    +    Y   +D+W++G    E+ + +P F        LF+I R  
Sbjct: 164 ---WYRAPEILLGSRQ----YSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTL 216

Query: 124 NPP-----PGL------------YRASNWSQHY-------VDFIAECLEKNPEHRPYMSE 159
             P     PG+            +   + S+         +D +++ L  +P  R     
Sbjct: 217 GTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKA 276

Query: 160 LLEHPF 165
            L+HP+
Sbjct: 277 ALQHPY 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI  G+  LH+  +++RDL+  N+LL   G ++I D GL+          K
Sbjct: 101 EGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTIK 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
             +G+  +MAPE+++      + Y    D WALG    E+  G+ PF+
Sbjct: 160 GRVGTVGYMAPEVVKN-----ERYTFSPDWWALGCLLYEMIAGQSPFQ 202

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 24/161 (14%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKTFLG 66
           +I  GM +L E  ++HRDL   NVL+     VKI DFGL+R     ET    D  K  + 
Sbjct: 117 QIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPI- 175

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WMA E +   H+    + ++ DVW+ G+T  EL   G  P++ + P R +  ++   
Sbjct: 176 --KWMALESIL--HRR---FTHQSDVWSYGVTVWELMTFGAKPYDGI-PAREIPDLLEKG 227

Query: 123 -RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R P P        +      + +C   + E RP   EL++
Sbjct: 228 ERLPQP-----PICTIDVYMIMVKCWMIDSECRPRFRELVD 263

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 21/155 (13%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLT-KDGE----VKIVDFGLSRE--TANTFDKKKTF 64
           ++  G V+L + H IHRDL   N L++ K  +    VKI DFGL+R+   ++ + K+   
Sbjct: 114 DVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEG 173

Query: 65  LGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIV 122
           L    WMAPE +      +DG +  + DVW+ G+   E L  G+ P+    P     +++
Sbjct: 174 LLPVRWMAPESL------LDGKFTTQSDVWSFGVLMWEILTLGQQPY----PALNNQEVL 223

Query: 123 RNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRP 155
           ++   G  L +  N        +  C  ++P  RP
Sbjct: 224 QHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERP 258

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 41/186 (22%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE---TANTFDKKKTFLGSP 68
           +++ G+ F H ++V+HRDL+  N+L+ K+GE+K+ DFGL+R        +  +   L   
Sbjct: 107 QLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTL--- 163

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKP-------------------- 107
            W  P  +  G K    Y   ID+W+ G    EL + G+P                    
Sbjct: 164 -WYRPPDVLFGAK---LYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGT 219

Query: 108 PFEDMHPTRALFQIVRNPPPGLYRASNWSQHYV--------DFIAECLEKNPEHRPYMSE 159
           P E+  P   + ++    P  +Y A+    + V        D +   L  NP  R    E
Sbjct: 220 PTEESWP--GVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEE 277

Query: 160 LLEHPF 165
            L+HP+
Sbjct: 278 ALQHPY 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E+   F   EI+ G+  LH  + ++RDL+  N+LL   G ++I D GL+ +     +  +
Sbjct: 101 EERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG-ESIR 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
             +G+  +MAPE++         Y    D W LG    E+ +G+ PF
Sbjct: 160 GRVGTVGYMAPEVLNN-----QRYTLSPDYWGLGCLIYEMIEGQSPF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NTFDKK 61
           ++   + +++ G+ ++H  H++HRDL+  N+L++  GE+K+ DFGL+R  +    T+  +
Sbjct: 104 NVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSE 163

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
              L    W  P  +  G  +   Y + +D+W  G   IE+  G+P F
Sbjct: 164 VVTL----WYRPPDVLLGATD---YSSALDIWGAGCIFIEMLQGQPAF 204

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG--LSRETANTF 58
           + E    F + E++  +  +H+ H +HRD++  NVLL  +G +++ DFG  L      T 
Sbjct: 99  LPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTV 158

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +    +G+P +++PEI++     +  Y    D W+LG+   E+  G+ PF
Sbjct: 159 -QSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPF 208

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 45/206 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 120 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TACTNFM 178

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE---------- 110
              ++ +  + APE++        GY   +D+W++G    EL  G   F+          
Sbjct: 179 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNK 233

Query: 111 --------DMHPTRALFQIVRN-----PP-PGLYRAS---NW------------SQHYVD 141
                          L   VRN     P  PG+       +W            +    D
Sbjct: 234 VIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARD 293

Query: 142 FIAECLEKNPEHRPYMSELLEHPFIT 167
            +++ L  +P+ R  + E L HP+IT
Sbjct: 294 LLSKMLVIDPDKRISVDEALRHPYIT 319

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFD 59
           + E+   F   E++  +  +H    IHRD++  N+LL K G +K+ DFG   +  AN   
Sbjct: 139 IPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV 198

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
           +  T +G+P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 199 RCDTAVGTPDYISPEVLK--SQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 247

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 26/173 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           ++   +  I  +I +GMV+L   H +HRDL   N L+  D  VKI DFG+SR+  T + +
Sbjct: 119 LTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYY 178

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
                 +    WM PE +         +    DVW+ G+   E+   GK P+  +     
Sbjct: 179 RVGGHTMLPIRWMPPESIMYRK-----FTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEV 233

Query: 118 --------LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                   L Q  R  P  +Y          D +  C +++P+ R  + ++ E
Sbjct: 234 IECITQGRLLQRPRTCPSEVY----------DIMLGCWKRDPQQRINIKDIHE 276

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 29/167 (17%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTFDKKK 62
           HIA    +I  GM +L  +H +HRDL   N L+ +   VKI DFGLSR+  +A+ +  + 
Sbjct: 128 HIAI---QIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQS 184

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF-----ED---MH 113
             L    WM PE +  G    +      D+W+ G+   E+   G  P+     ++   M 
Sbjct: 185 KSLLPVRWMPPEAILYGKFTTES-----DIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMI 239

Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            +R L     + P  +Y            + EC  + P  RP   ++
Sbjct: 240 RSRQLLPCPEDCPARVYA----------LMIECWNEIPARRPRFKDI 276

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 60.8 bits (147), Expect = 5e-10
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F   +I+    +L   ++++RDL+  N+LL KDG +K+ DFG ++       +  T  G+
Sbjct: 135 FYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT---RTYTLCGT 191

Query: 68  PSWMAPEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
           P ++APEI +  GH +        D W LGI   E+  G PPF    P
Sbjct: 192 PEYIAPEILLNVGHGKA------ADWWTLGIFIYEILVGCPPFYANEP 233

Length = 340

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 24/168 (14%)

Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTF 58
           Q++     +I  GM +L E  ++HRDL   NVL+     VKI DFGL++     E     
Sbjct: 109 QYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHA 168

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           +  K  +    WMA E +   H+    Y ++ DVW+ G+T  EL   G  P++ + P   
Sbjct: 169 EGGKVPI---KWMALESIL--HRI---YTHQSDVWSYGVTVWELMTFGSKPYDGI-PASE 219

Query: 118 LFQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           +  I+      P P +     +       + +C   + + RP   EL+
Sbjct: 220 ISSILEKGERLPQPPICTIDVYM-----IMVKCWMIDADSRPKFRELI 262

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 60.5 bits (146), Expect = 6e-10
 Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFD 59
           + E    F L E++  +  +H+ H +HRD++  N+L+  +G +++ DFG   +   +   
Sbjct: 99  LPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV 158

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           +    +G+P +++PEI++        Y    D W+LG+   E+  G+ PF
Sbjct: 159 QSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPF 208

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 29/167 (17%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTFDKKK 62
           HIA    +I  GM +L  +  +H+DL   N+L+ +   VKI D GLSRE  +A+ +  + 
Sbjct: 128 HIAI---QIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQP 184

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE--------DMH 113
             L    WM PE +  G    D      D+W+ G+   E+   G  P+         +M 
Sbjct: 185 KSLLPIRWMPPEAIMYGKFSSDS-----DIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMV 239

Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             R L     + PP +Y            + EC ++ P  RP   ++
Sbjct: 240 RKRQLLPCSEDCPPRMY----------SLMTECWQEGPSRRPRFKDI 276

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 59.6 bits (144), Expect = 8e-10
 Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 23/168 (13%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLGSPS 69
           +I  GM +L     +HRDL   NVL+  + +VKI DFGL++  ET   +   K  L SP 
Sbjct: 117 QICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPV 176

Query: 70  -WMAPE-IMRCGHKEVDGYDNRIDVWALGITAIEL-----GDGKP--PFEDM----HPTR 116
            W APE +++             DVW+ G+T  EL      +  P   F  M    H   
Sbjct: 177 FWYAPECLIQSKFYIAS------DVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQM 230

Query: 117 ALFQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            + ++VR    G  L R  N  +     + +C E  P  R     L+E
Sbjct: 231 TVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIE 278

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 116 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 174

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 175 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 211

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 33/109 (30%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 181

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
              ++ +  + APE++        GY   +D+W++G    E+  G   F
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKGGVLF 225

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)

Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE---TANTFDKKKTFLG 66
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R       T+  +   L 
Sbjct: 106 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTL- 164

Query: 67  SPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
              W  APEI+  G K    Y   +D+W+LG    E+   +  F        LF+I R
Sbjct: 165 ---WYRAPEIL-LGCKY---YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFR 215

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S Q +     ++  GM +L +   IHRDL   N+L+ ++   KI DFGLSR        
Sbjct: 121 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYV 178

Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
           KKT    P  WMA E +         Y    DVW+ G+   E+   G  P+  M      
Sbjct: 179 KKTMGRLPVRWMAIESL-----NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM----TC 229

Query: 119 FQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            ++    P G  L +  N      D + +C  + P  RP  +++L
Sbjct: 230 AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 274

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKK 61
           E+   F   E++  +  +H   +IHRD++  N+LL K G +K+ DFG   +   T   + 
Sbjct: 141 EKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRC 200

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
            T +G+P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 201 DTAVGTPDYISPEVLK--SQGGDGYYGRECDWWSVGVFLFEMLVGDTPF 247

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 12/108 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG----S 67
           +I  GM +L E+ ++HR+L   N+LL  D  V+I DFG++       D KK F       
Sbjct: 117 QIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYP--DDKKYFYSEHKTP 174

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHP 114
             WMA E +  G      Y ++ DVW+ G+T  E+   G  P+  M P
Sbjct: 175 IKWMALESILFGR-----YTHQSDVWSYGVTVWEMMSYGAEPYAGMRP 217

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK--- 61
            +  I  +I +GMV+L   H +HRDL   N L+ +   VKI DFG+SR+  +T   +   
Sbjct: 123 QMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGG 182

Query: 62  KTFLGSPSWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
           +T L    WM PE I+         +    D+W+ G+   E+   GK P+  +  T A+ 
Sbjct: 183 RTML-PIRWMPPESIL------YRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIE 235

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            I +     L R           +  C ++ P+ R
Sbjct: 236 CITQGRE--LERPRTCPPEVYAIMQGCWQREPQQR 268

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NT 57
           +S  ++   L +++ G+ + H+  V+HRDL+  N+L+++ GE+K+ DFGL+R  +    T
Sbjct: 100 LSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKT 159

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           +  +   L    W  P  +  G  E   Y   +D+W +G    E+  G+P F
Sbjct: 160 YSNEVVTL----WYRPPDVLLGSTE---YSTSLDMWGVGCIFYEMATGRPLF 204

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 40/144 (27%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL---------- 50
           +SE+   F + E +  +  +H+   IHRD++  N+LL   G VK+ DFGL          
Sbjct: 98  LSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRT 157

Query: 51  --------------------SRETANTFDKKK-----TFLGSPSWMAPEIMRCGHKEVDG 85
                               S+  A T+ K +     + +G+P ++APE+         G
Sbjct: 158 EFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFM-----QTG 212

Query: 86  YDNRIDVWALGITAIELGDGKPPF 109
           Y+   D W+LG+   E+  G PPF
Sbjct: 213 YNKLCDWWSLGVIMYEMLIGYPPF 236

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 28/167 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTFLGSPSW 70
           +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+           W
Sbjct: 112 QISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKW 171

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL------FQIVR 123
            APE +       + +  + DVWA G+   E+   G  P+  +  ++        +++ R
Sbjct: 172 TAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMER 226

Query: 124 NP--PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL---LEHPF 165
               PP +Y            +  C + NP  RP  +E+    E  F
Sbjct: 227 PEGCPPKVYE----------LMRACWQWNPSDRPSFAEIHQAFETMF 263

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++I  + + H+N ++HRD++  N+L++ +  +K+ DFG +R  +   +   T   +  W 
Sbjct: 108 QLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWY 167

Query: 72  -APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI--VRNPPP 127
            +PE++         Y   +D+W++G    EL DG+P F        LF I  V  P P
Sbjct: 168 RSPELLLGA-----PYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLP 221

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLG 66
           +L+ I  GM +L E + +HRDL   N+L+  +   K+ DFGLSR  E   +     + LG
Sbjct: 111 MLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLG 170

Query: 67  SP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPT---RALF 119
                 W APE +         + +  DVW+ GI   E +  G+ P+ DM       A+ 
Sbjct: 171 GKIPIRWTAPEAI-----AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIE 225

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           Q  R PPP      +        + +C +K+   RP   +++
Sbjct: 226 QDYRLPPP-----MDCPTALHQLMLDCWQKDRNARPKFGQIV 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 24/159 (15%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKTFLG 66
           +I  GM++L E  ++HRDL   NVL+     VKI DFGL+R     E     D  K  + 
Sbjct: 117 QIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPI- 175

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WMA E   C H     + ++ DVW+ G+T  EL   G  P++ + PTR +  ++   
Sbjct: 176 --KWMALE---CIHYR--KFTHQSDVWSYGVTIWELMTFGGKPYDGI-PTREIPDLLEKG 227

Query: 123 -RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            R P P +     +       + +C   + + RP   EL
Sbjct: 228 ERLPQPPICTIDVYM-----VMVKCWMIDADSRPKFKEL 261

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKK 62
           HIA    +I +GMV+L   H +HRDL   N L+  +  VKI DFG+SR+  +T  +    
Sbjct: 127 HIA---SQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGG 183

Query: 63  TFLGSPSWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
             +    WM PE IM         +    DVW+ G+   E+   GK P+  +  T  +  
Sbjct: 184 HTMLPIRWMPPESIM------YRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIEC 237

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           I +     L R     +   D +  C ++ P+ R  + E+
Sbjct: 238 ITQGRV--LERPRVCPKEVYDIMLGCWQREPQQRLNIKEI 275

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--F 58
           +++  +  I ++I  GMV+L   H +HRDL   N L+ ++  VKI DFG+SR+  +T  +
Sbjct: 117 LTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYY 176

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
                 +    WM PE +         +    DVW+LG+   E+   GK P+  +     
Sbjct: 177 RVGGHTMLPIRWMPPESIM-----YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEV 231

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
           +  I +     L R     +   D +  C ++ P  R
Sbjct: 232 IECITQGRV--LQRPRTCPKEVYDLMLGCWQREPHMR 266

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTFDKKKTFLG 66
           I+ +I  GM FL  +HV+H+DL   NVL+     VKI D GL RE   A+ +      L 
Sbjct: 129 IVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLL 188

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              WM+PE +  G   +D      D+W+ G+   E+
Sbjct: 189 PIRWMSPEAIMYGKFSIDS-----DIWSYGVVLWEV 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 15/164 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++ Q +     ++ TGM +L E   IHRDL   NVL+ ++   KI DFGLSR        
Sbjct: 116 LTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSR--GEEVYV 173

Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
           KKT    P  WMA E +         Y  + DVW+ G+   E+   G  P+  M      
Sbjct: 174 KKTMGRLPVRWMAIESL-----NYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM----TC 224

Query: 119 FQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            ++    P G  + +  N      + + +C    P  RP  +++
Sbjct: 225 AELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQI 268

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 54/163 (33%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---------- 51
           SE    F + E +  +  +H+   IHRD++  N+L+ + G +K+ DFGLS          
Sbjct: 99  SEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSA 158

Query: 52  --------------------------------RETANTFDKKKTFL-----GSPSWMAPE 74
                                           ++   T+ K +  +     G+P ++APE
Sbjct: 159 YYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPE 218

Query: 75  IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPT 115
           I         GY    D W+LG    E   G PPF  E+ H T
Sbjct: 219 IF-LQQ----GYGQECDWWSLGAIMFECLIGWPPFCSENSHET 256

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 52/205 (25%)

Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFL 65
           ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T     +F+
Sbjct: 120 MSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGT-----SFM 173

Query: 66  GSPS-----WMAPE-IMRCGHKE-VD-------------------GYDNRIDVWALGITA 99
            +P      + APE I+  G+KE VD                   G D  ID W   I  
Sbjct: 174 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD-HIDQWNKIIE- 231

Query: 100 IELGDGKPPFED-MHPTRA----------------LFQIVRNPPPGLYRASNWSQHYVDF 142
            +LG     F   + PT                  LF  V  PP         +    D 
Sbjct: 232 -QLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDL 290

Query: 143 IAECLEKNPEHRPYMSELLEHPFIT 167
           +++ L  +PE R  + + L+HP+I 
Sbjct: 291 LSKMLVIDPEKRISVDDALQHPYIN 315

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 19/162 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS----RETANTFDKKKTFLGS 67
           EI  G+  +H+++ +H DL   N  LT D  VK+ D+G+     +E     +  K     
Sbjct: 107 EIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCV--P 164

Query: 68  PSWMAPEIMRCGH-----KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQI 121
             W+APE++   H      E     N   VWALG+T  EL +    P+  +     L  +
Sbjct: 165 LRWLAPELVGEFHGGLITAEQTKPSN---VWALGVTLWELFENAAQPYSHLSDREVLNHV 221

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLE---KNPEHRPYMSEL 160
           +++    L++       Y +   E L+    +PE R    E+
Sbjct: 222 IKDQQVKLFK-PQLELPYSERWYEVLQFCWLSPEKRATAEEV 262

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 56.5 bits (136), Expect = 8e-09
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ   F   E+  G+  L    +++RDL+  N+LL   G ++I D GL+ +     +  +
Sbjct: 101 EQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG-ETVR 159

Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
             +G+  +MAPE++       + Y    D W LG    E+  G+ PF
Sbjct: 160 GRVGTVGYMAPEVINN-----EKYTFSPDWWGLGCLIYEMIQGQSPF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 57.0 bits (137), Expect = 8e-09
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 40/144 (27%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL---------- 50
           ++E+   F + E +  +  +H+   IHRD++  N+LL   G VK+ DFGL          
Sbjct: 98  LTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRT 157

Query: 51  --------------------SRETANTFDKKK-----TFLGSPSWMAPEIMRCGHKEVDG 85
                               S+  A T+ + +     + +G+P ++APE+         G
Sbjct: 158 EFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFM-----QTG 212

Query: 86  YDNRIDVWALGITAIELGDGKPPF 109
           Y+   D W+LG+   E+  G PPF
Sbjct: 213 YNKLCDWWSLGVIMYEMLIGYPPF 236

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 56.1 bits (135), Expect = 8e-09
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L  + +GM +L E   +H+ L    VL+  D   KI  F   +E     DK +    + 
Sbjct: 112 MLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQE-----DKSEAIYTTM 166

Query: 69  S------WMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPT---RAL 118
           S      W APE ++  H     + +  DVW+ GI   E +  G+ P+ DM      +A+
Sbjct: 167 SGKSPVLWAAPEAIQYHH-----FSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAV 221

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
               R P P      N        + +C +K    RP  S++
Sbjct: 222 EDGFRLPAP-----RNCPNLLHQLMLDCWQKERGERPRFSQI 258

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 56.9 bits (137), Expect = 9e-09
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKKKTFLG 66
           F   E++  +  +H    IHRD++  N+LL K G +K+ DFG   +       +  T +G
Sbjct: 146 FYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVG 205

Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
           +P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 206 TPDYISPEVLKS--QGGDGYYGRECDWWSVGVFLYEMLVGDTPF 247

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 22/159 (13%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS---- 67
           +I  GM +LH+  VIH+D+   N ++ ++ +VKI D  LSR+    F      LG     
Sbjct: 125 QIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRD---LFPMDYHCLGDNENR 181

Query: 68  P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
           P  WMA E +   +KE   Y +  DVW+ G+   EL   G+ P+ ++ P    F++    
Sbjct: 182 PVKWMALESLV--NKE---YSSASDVWSFGVLLWELMTLGQTPYVEIDP----FEMAAYL 232

Query: 126 PPGLYRAS---NWSQHYVDFIAECLEKNPEHRPYMSELL 161
             G YR +   N        +A C   +PE RP  S+L+
Sbjct: 233 KDG-YRLAQPINCPDELFAVMACCWALDPEERPSFSQLV 270

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 27/165 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 111 MLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 170

Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHP---TRALFQI 121
               W APE +         + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 171 IPIRWTAPEAI-----AYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEG 225

Query: 122 VRNPPP-----GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R P P      L++           + +C +K+   RP   +++
Sbjct: 226 YRLPAPMDCPAALHQ----------LMLDCWQKDRNERPKFEQIV 260

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 26/173 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-TFD 59
           +  Q +   + +I +GM +L     IHRDL   N +L ++  V + DFGLS++  N  + 
Sbjct: 109 LPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYY 168

Query: 60  KKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           ++      P  W+A E +      V  Y  + DVW+ G+T  E+   G+ P+  +  +  
Sbjct: 169 RQGRIAKMPVKWIAIESLA---DRV--YTTKSDVWSFGVTMWEIATRGQTPYPGVENSEI 223

Query: 118 LFQI-----VRNPP---PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              +     ++ PP    GLY            ++ C   NP+ RP    L  
Sbjct: 224 YDYLRQGNRLKQPPDCLDGLY----------SLMSSCWLLNPKDRPSFETLRC 266

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 55/212 (25%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG- 66
           F + E+   +  +H+   IHRD++  N+L+ +DG +K+ DFGL      T D K    G 
Sbjct: 105 FYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGD 164

Query: 67  ---------SPSWMAPEIMRCGHK-----------------------------EV---DG 85
                    S  W  P   RCG +                             EV    G
Sbjct: 165 HVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTG 224

Query: 86  YDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-----NPPPGLYRASNWSQHYV 140
           Y    D W++G+   E+  G+PPF    P     +++      + PP     +  S    
Sbjct: 225 YTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPP----QAKLSPEAS 280

Query: 141 DFIAECLEKNPEHR---PYMSELLEHPFITSL 169
           D I + L + PE R       E+  HPF  ++
Sbjct: 281 DLIIK-LCRGPEDRLGKNGADEIKAHPFFKTI 311

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 19/162 (11%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-----TFDKKKTFLG 66
           EI  G++ LH+N+ IH DL   N LLT D  VKI D+GLS          T D+    L 
Sbjct: 108 EIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPL- 166

Query: 67  SPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
              W+APE++   H  +   D     +VW+LG+T  EL + G  P+  +   + L   VR
Sbjct: 167 --RWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVR 224

Query: 124 N-----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                 P P L      S  + + +  C  + PE RP   E+
Sbjct: 225 EQQLKLPKPRL--KLPLSDRWYEVMQFCWLQ-PEQRPSAEEV 263

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S Q +     ++  GM +L +   IHRDL   N+L+ ++   KI DFGLSR        
Sbjct: 109 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYV 166

Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
           KKT    P  WMA E +         Y    DVW+ G+   E+   G  P+  M      
Sbjct: 167 KKTMGRLPVRWMAIESL-----NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM----TC 217

Query: 119 FQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            ++    P G  L +  N      D + +C  + P  RP  +++
Sbjct: 218 AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI 261

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 45/154 (29%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL----------- 50
           +E+   F + E I  +  +H+   IHRD++  N+LL   G +K+ DFGL           
Sbjct: 99  TEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTE 158

Query: 51  ----------------------SRETANTFDKKKTFL-----GSPSWMAPEIMRCGHKEV 83
                                 S+  A T+ + +  L     G+P ++APE+        
Sbjct: 159 FYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFL-----Q 213

Query: 84  DGYDNRIDVWALGITAIELGDGKPPF--EDMHPT 115
            GY+   D W+LG+   E+  G PPF  ++   T
Sbjct: 214 TGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQET 247

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 39/195 (20%)

Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRE---TANTFDKK 61
           I   L +I+ G+ + H + V+HRDL+  N+L+ +    +K+ DFGL+R       TF  +
Sbjct: 104 IKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHE 163

Query: 62  KTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              L    W  APEI+         Y   +D+W++G    E+ + KP F        LF+
Sbjct: 164 VVTL----WYRAPEILLGSRH----YSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFK 215

Query: 121 IVR--NPP-----PGLYRASNWSQHY-------------------VDFIAECLEKNPEHR 154
           I R    P     PG+    ++   +                   VD +++ L  +P  R
Sbjct: 216 IFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKR 275

Query: 155 PYMSELLEHPFITSL 169
                 LEH +   L
Sbjct: 276 ITARAALEHEYFKDL 290

Length = 294

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 28/164 (17%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           +I  GM +L   + IHRDL   N +L +D  V + DFGLS++  +    ++  +   P  
Sbjct: 121 DIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVK 180

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPF---EDMHPTRALFQIVR- 123
           W+A E +       D  Y ++ DVWA G+T  E+   G+ P+   E+      L    R 
Sbjct: 181 WIAIESL------ADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRL 234

Query: 124 NPPP----GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             P      LY          D +  C   +P+ RP  ++L E 
Sbjct: 235 KQPEDCLDELY----------DLMYSCWRADPKDRPTFTKLREV 268

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I  GM +L + + +HRDL   N+L+  + E K+ DFGLSR   +  +   T  G  
Sbjct: 112 MLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGK 171

Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM 112
               W APE +         + +  DVW+ GI   E +  G+ P+ DM
Sbjct: 172 IPIRWTAPEAI-----AYRKFTSASDVWSFGIVMWEVMSFGERPYWDM 214

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 46/214 (21%), Positives = 77/214 (35%), Gaps = 63/214 (29%)

Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------ 61
           F + E+   +  +H+   IHRD++  N+L+ +DG +K+ DFGL      T D K      
Sbjct: 105 FYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGD 164

Query: 62  -------------------------------------KTFLGSPSWMAPEIMRCGHKEVD 84
                                                 + +G+P+++APE++        
Sbjct: 165 HHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVL-----LRT 219

Query: 85  GYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV------RNPPPGLYRASNWSQH 138
           GY    D W++G+   E+  G+PPF    P     +++        P          S+ 
Sbjct: 220 GYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQA-----KLSRE 274

Query: 139 YVDFIAECLEKNPEHR---PYMSELLEHPFITSL 169
             D I   L    E R       E+  HPF   +
Sbjct: 275 ASDLILR-LCCGAEDRLGKNGADEIKAHPFFKGI 307

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 41/215 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  +    I + ++  + +LH   +IHRD++  N+ L +     + DFG + +     D 
Sbjct: 182 LPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDT 241

Query: 61  KKTF--LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------EDM 112
            + +   G+    +PE++      +D Y  + D+W+ G+   E+                
Sbjct: 242 PQCYGWSGTLETNSPELL-----ALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSS 296

Query: 113 HPTRAL-------------------------FQIVRNPP---PGLYRASNWSQHYVDFIA 144
              R++                         + IV  PP   P + R           IA
Sbjct: 297 SQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIA 356

Query: 145 ECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           + L  + E RP   ++L  P  T  P N L+++  
Sbjct: 357 KMLTFDQEFRPSAQDILSLPLFTKEPINLLNITPS 391

Length = 392

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTFDKKKTFLGSP- 68
           +I +GM +L   + +HRDL   N L+ K+  +KI DFG+SR   +++ +  +    G   
Sbjct: 138 QIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQ----GRAP 193

Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE---LGDGKPPFEDMHPTRALFQIV 122
               WMA E +  G      +  + DVWA G+T  E   L   + P+E +       Q++
Sbjct: 194 LPIRWMAWESVLLGK-----FTTKSDVWAFGVTLWEILTLCR-EQPYEHLTD----QQVI 243

Query: 123 RNPPPG---------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            N             L R  N  +   + + EC  ++ E RP   E+  H F+  
Sbjct: 244 ENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREI--HLFLQR 296

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 29/161 (18%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLGSP- 68
           ++ T + +L     +HRD+   NVL++    VK+ DFGLSR  E  + +   K  L  P 
Sbjct: 115 QLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKL--PI 172

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR---- 123
            WMAPE +         + +  DVW  G+   E L  G  PF+ +     + +I      
Sbjct: 173 KWMAPESI-----NFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERL 227

Query: 124 ----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
               N PP LY            + +C   +P  RP  +EL
Sbjct: 228 PMPPNCPPTLY----------SLMTKCWAYDPSKRPRFTEL 258

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 64/221 (28%)

Query: 4   QHIA-FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL------------ 50
           + +A F + E+   +  +H+   IHRD++  N+L+  DG +K+ DFGL            
Sbjct: 100 EVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKY 159

Query: 51  ----------SRETANTFD------------------KKK-------TFLGSPSWMAPEI 75
                     S E ++ +D                   K+       + +G+P+++APE+
Sbjct: 160 YQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEV 219

Query: 76  MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-----NPPPGLY 130
           +        GY    D W++G+   E+  G+PPF    PT    +++      + PP + 
Sbjct: 220 LL-----RKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQV- 273

Query: 131 RASNWSQHYVDFIAE--CLEKNPEHRPYMSELLEHPFITSL 169
                S   VD I +  C  +    R    ++  HPF + +
Sbjct: 274 ---KLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEV 311

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 37/145 (25%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT----- 63
           I+K+++  + ++H+  +IHRD++  N+ L  DG++ + DFG    TA  F+K++      
Sbjct: 272 IMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFG----TAMPFEKEREAFDYG 327

Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE--------LGDGKPPFEDMHPT 115
           ++G+ +  +PEI+       DGY    D+W+ G+  ++        +GDG        P 
Sbjct: 328 WVGTVATNSPEIL-----AGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGG-----KPG 377

Query: 116 RALFQIVR----------NPPPGLY 130
           + L +I+           +PP  L+
Sbjct: 378 KQLLKIIDSLSVCDEEFPDPPCKLF 402

Length = 501

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           I K+I+ G+ +LH   +IHRD++  N+ +    +V I D G ++           FLG  
Sbjct: 162 IEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPA----FLGLA 217

Query: 69  SWM---APEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
             +   APE++       D Y+++ D+W+ GI   E+
Sbjct: 218 GTVETNAPEVL-----ARDKYNSKADIWSAGIVLFEM 249

Length = 357

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET-ANTFD 59
           +S   +  +  +I +GM +L   + +HRDL   N L+ ++  +KI DFG+SR   A  + 
Sbjct: 135 ISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYY 194

Query: 60  KKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD--GKPPFEDMHPTR 116
           + +     P  WMA E +  G      +    DVWA G+T  E+     + P+ ++   +
Sbjct: 195 RIQGRAVLPIRWMAWECILMGK-----FTTASDVWAFGVTLWEILMLCKEQPYGELTDEQ 249

Query: 117 AL---FQIVRNPPPGLY--RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            +    +  R+    +Y  R     Q   + + +C  ++   RP  S++  H F+T 
Sbjct: 250 VIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDI--HAFLTE 304

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-TFDKKKTFLGS 67
           I + ++  + +LHEN +IHRD++  N+ +   G+V + DFG +    +   +K   + G+
Sbjct: 187 IERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGT 246

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK 106
            +  APE++       D Y   +D+W+ GI   E+    
Sbjct: 247 IATNAPELL-----ARDPYGPAVDIWSAGIVLFEMATCH 280

Length = 391

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 28/133 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHE-------NHVIHRDLRGSNVLLTKD----GEV------ 43
           + E  I  I ++++  + + H          V+HRDL+  N+ L+      G++      
Sbjct: 115 IEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANN 174

Query: 44  -------KIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG 96
                  KI DFGLS+          + +G+P + +PE++     E   YD++ D+WALG
Sbjct: 175 LNGRPIAKIGDFGLSKNIG-IESMAHSCVGTPYYWSPELLL---HETKSYDDKSDMWALG 230

Query: 97  ITAIELGDGKPPF 109
               EL  GK PF
Sbjct: 231 CIIYELCSGKTPF 243

Length = 1021

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 19/44 (43%), Positives = 34/44 (77%)

Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG 49
           I  ++++++TG+  LH   ++HRD++  N+L+T DG+VKI+DFG
Sbjct: 311 IKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFG 354

Length = 507

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET-ANTFD 59
           +  Q +   + +I +GM +L   + IHRDL   N +L ++  V + DFGLS++  +  + 
Sbjct: 110 LPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYY 169

Query: 60  KKKTFLGSP-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTR 116
           ++      P  W+A E +       D  Y    DVWA G+T  E+   G+ P+  +  + 
Sbjct: 170 RQGCASKLPVKWLALESL------ADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSE 223

Query: 117 ALFQIV-----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
               ++     + PP  L       +   + + +C    P+ RP    L
Sbjct: 224 IYNYLIKGNRLKQPPDCL-------EDVYELMCQCWSPEPKCRPSFQHL 265

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 26/175 (14%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSR--ETANTF 58
           SE  +  I+++++  +  LH++++IH D++  NVL       + + D+GL +   T + +
Sbjct: 107 SEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCY 166

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-----EDMH 113
           D      G+  + +PE ++ GH     YD   D WA+G+   EL  GK PF     E++ 
Sbjct: 167 D------GTLDYFSPEKIK-GHN----YDVSFDWWAVGVLTYELLTGKHPFKEDEDEELD 215

Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR--PYMSELLEHPFI 166
               L +  +   P      N S++  DF+   L+ N  +R   Y +E+++HPF+
Sbjct: 216 LES-LLKRQQKKLP---FIKNVSKNANDFVQSMLKYNINYRLTNY-NEIIKHPFL 265

Length = 267

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           +S  ++ ++  +I +GM +L   + +HRDL   N L+     +KI DFG+SR   + + +
Sbjct: 126 VSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYY 185

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
             +   +    WMA E +  G      +    DVWA G+T  E+
Sbjct: 186 RIQGRAVLPIRWMAWESILLGK-----FTTASDVWAFGVTLWEM 224

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN 56
           E+     + E+   + +LH + +IHRDL+  N+L++ +G +K+ DFGLS+ T N
Sbjct: 103 EEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN 156

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 65  LGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
           LG+P ++APE++    H         +D WALG+   E   G PPF D  P + +FQ + 
Sbjct: 541 LGTPDYLAPELLLGKPH------GPAVDWWALGVCLFEFLTGIPPFNDETPQQ-VFQNIL 593

Query: 124 NP----PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH 175
           N     P G  + S  +Q+ ++ +   L  +P  R  + EL +HP    +   +L 
Sbjct: 594 NRDIPWPEGEEKLSVNAQNAIEIL---LTMDPTKRAGLKELKQHPLFHGVDWENLQ 646

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSR---ETANTFDKK 61
           +L +I+ G+ +LH N V+HRDL+ +N+L+  +    G VKI D G +R            
Sbjct: 113 LLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADL 172

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
              + +  + APE++         Y   ID+WA+G    EL   +P F
Sbjct: 173 DPVVVTFWYRAPELLLGARH----YTKAIDIWAIGCIFAELLTSEPIF 216

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSR---ETANTFDKK 61
           +L +I+ G+ +LH N V+HRDL+ +N+L+  +    G VKI D G +R            
Sbjct: 113 LLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADL 172

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
              + +  + APE++         Y   ID+WA+G    EL   +P F
Sbjct: 173 DPVVVTFWYRAPELLLGARH----YTKAIDIWAIGCIFAELLTSEPIF 216

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 48/198 (24%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E+ +   + +++  +  +H N + HRD++  N+L+ KD  +K+ DFG    +      K
Sbjct: 98  PEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILI-KDDILKLADFG----SCRGIYSK 152

Query: 62  KTFLG--SPSWM-APE-IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TR 116
             +    S  W  APE ++  G+     Y  ++D+WA+G    E+    P F    P T 
Sbjct: 153 PPYTEYISTRWYRAPECLLTDGY-----YGPKMDIWAVGCVFFEILSLFPLF----PGTN 203

Query: 117 ALFQIVR------NPPPGL------YRASNW-----------------SQHYVDFIAECL 147
            L QI +       P   +       R  N+                 S   +D + + L
Sbjct: 204 ELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLL 263

Query: 148 EKNPEHRPYMSELLEHPF 165
             +P+ R    + L HP+
Sbjct: 264 AYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 50/182 (27%), Positives = 70/182 (38%), Gaps = 54/182 (29%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS-- 69
           +I  GM +L     +HRDL   N+L+  +  VKI DFGL++      DK+   +  P   
Sbjct: 116 QICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ--DKEYYKVREPGES 173

Query: 70  ---WMAPEIMRCGHKEVDGYDNRI----DVWALGITAIEL-----GDGKPPFEDMH---P 114
              W APE +          +++     DVW+ G+   EL         PP E M     
Sbjct: 174 PIFWYAPESLT---------ESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGN 224

Query: 115 TRALFQIV-----------RNP-PPG----LYRASNWSQHYVDFIAECLEKNPEHRPYMS 158
            +    IV           R P PPG    +Y            + EC   +P  RP  S
Sbjct: 225 DKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYA----------IMKECWNNDPSQRPSFS 274

Query: 159 EL 160
           EL
Sbjct: 275 EL 276

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 31/156 (19%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-------VKIVDFGLSRETANTFDKK 61
           + K++ + + +L +  ++H ++ G N+L+ + G        +K+ D G+         ++
Sbjct: 106 VAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI---TVLSRE 162

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRAL-F 119
           +     P W+APE +R G   +       D W+ G T +E+  +G+ P   +  +    F
Sbjct: 163 ERVERIP-WIAPECIRNGQASLTIA---ADKWSFGTTLLEICSNGEEPLSTLSSSEKERF 218

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
              ++  P      + ++   + I +C   +P  RP
Sbjct: 219 YQDQHRLPMP----DCAE-LANLINQCWTYDPTKRP 249

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           +S   + F+  +I +GM +L   + +HRDL   N L+ K+  +KI DFG+SR   + + +
Sbjct: 127 ISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYY 186

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
             +   +    WM+ E +  G      +    DVWA G+T  E+
Sbjct: 187 RIQGRAVLPIRWMSWESILLGK-----FTTASDVWAFGVTLWEI 225

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 10/79 (12%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFDKKKT-- 63
           ++ +++  +   H   ++HRDL+  N+++++ G     K++DFG+        D      
Sbjct: 84  LMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATL 143

Query: 64  -----FLGSPSWMAPEIMR 77
                 LG+P++ APE +R
Sbjct: 144 TRTTEVLGTPTYCAPEQLR 162

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 23/107 (21%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--------ETANTFDK 60
           I  +I   + ++H   V+HRDL+  N+LL   GEV I+D+G +               D+
Sbjct: 118 IFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDE 177

Query: 61  KKTF----------LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGI 97
           +             +G+P +MAPE +  G    +      D++ALG+
Sbjct: 178 RNICYSSMTIPGKIVGTPDYMAPERLL-GVPASE----STDIYALGV 219

Length = 932

>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 5/46 (10%)

Query: 9   ILKEI--ITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR 52
           + +EI  + G   LH   +IH DL  SN++L+  G++ ++DFGL+ 
Sbjct: 100 LSREIGRLVGK--LHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAE 142

Length = 211

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--------VKIVDFGLSRETANTFDK 60
           + K++   + FL +  + H ++   NVLL ++ +        +K+ D G+S     T   
Sbjct: 105 VAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI----TVLP 160

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRAL- 118
           K+  L    W+ PE +              D W+ G T  E+   G  P   +   + L 
Sbjct: 161 KEILLERIPWVPPECIE----NPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQ 216

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
           F   R+  P    A  W++   + I +C++  P+ RP
Sbjct: 217 FYEDRHQLP----APKWTE-LANLINQCMDYEPDFRP 248

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGE-VKIVDFGLSRETANTFDKKKTFLGSPSW 70
           ++   + ++H   + HRDL+  N+L+  +   +K+ DFG ++       +  +++ S  +
Sbjct: 178 QLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAG-QRSVSYICSRFY 236

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
            APE+M         Y   ID+W+LG    E+  G P F        L +I++
Sbjct: 237 RAPELMLGA----TNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQ 285

Length = 440

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 36/169 (21%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-------VKIVDFG-----LSRETAN 56
           + +++ + + +L + +++H ++   N+LL + G        +K+ D G     LSRE   
Sbjct: 122 VAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREER- 180

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPT 115
                   +    W+APE +       +      D W+ G T +E+  DG+ P ++  P+
Sbjct: 181 --------VERIPWIAPECVP----GGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS 228

Query: 116 ---RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
              R   +  R P P         +     I++CL   P  RP    +L
Sbjct: 229 EKERFYEKKHRLPEPS-------CKELATLISQCLTYEPTQRPSFRTIL 270

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           E++  +  LH   ++ RDL  +N+LL   G +++  F    E  ++ D +          
Sbjct: 93  EMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGE---------- 142

Query: 72  APEIMRCGHKEVDGYDNRI---DVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG 128
           A E M C   EV G        D W+LG    EL  GK   E  HP+        N P  
Sbjct: 143 AVENMYCA-PEVGGISEETEACDWWSLGAILFELLTGKTLVE-CHPSGINTHTTLNIPEW 200

Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYM-----SELLEHPF 165
           +      S+     + + L+ NP  R         ++  HPF
Sbjct: 201 V------SEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPF 236

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 20  LHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           LH+  ++H DL  SN++L+    +  +DFGL   +    DK
Sbjct: 108 LHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFSDEVEDK 147

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
KOG0164|consensus	1001		100.0
PTZ00014	821	myosin-A; Provisional	100.0
KOG0162|consensus	1106		100.0
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	100.0
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	100.0
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	100.0
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	100.0
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	100.0
KOG0163|consensus	1259		100.0
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	100.0
KOG0161|consensus	1930		100.0
KOG0160|consensus	862		100.0
KOG4229|consensus	1062		100.0
KOG0598|consensus	357		100.0
KOG0616|consensus	355		100.0
KOG0581|consensus	364		100.0
KOG0615|consensus	475		100.0
KOG0575|consensus	592		100.0
KOG0592|consensus	604		100.0
KOG0694|consensus	694		100.0
KOG0033|consensus	355		100.0
KOG0578|consensus	550		100.0
KOG0605|consensus	550		100.0
KOG0599|consensus	411		100.0
KOG0593|consensus	396		100.0
KOG0588|consensus	786		100.0
KOG0583|consensus	370		100.0
KOG0690|consensus	516		100.0
KOG0579|consensus	1187		100.0
KOG0661|consensus	538		100.0
KOG0198|consensus	313		100.0
KOG0582|consensus	516		100.0
KOG0659|consensus	318		100.0
KOG0604|consensus	400		99.98
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.98
KOG0594|consensus	323		99.98
KOG0663|consensus	419		99.98
KOG0660|consensus	359		99.97
KOG0696|consensus	683		99.97
KOG0201|consensus	467		99.97
KOG0591|consensus	375		99.97
KOG0600|consensus	560		99.97
KOG0610|consensus	459		99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
KOG0597|consensus	808		99.97
KOG0986|consensus	591		99.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.97
KOG0658|consensus	364		99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
KOG0585|consensus	576		99.97
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.97
KOG0614|consensus	732		99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
KOG0695|consensus	593		99.97
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
KOG4717|consensus	864		99.97
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
PTZ00036	440	glycogen synthase kinase; Provisional	99.97
KOG0612|consensus	1317		99.97
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.97
KOG0032|consensus	382		99.97
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
KOG0983|consensus	391		99.97
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.97
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.97
KOG0595|consensus	429		99.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.97
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.97
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.96
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.96
KOG0574|consensus	502		99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
KOG0580|consensus	281		99.96
KOG0603|consensus	612		99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.96
PTZ00284	467	protein kinase; Provisional	99.96
KOG0589|consensus	426		99.96
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
PHA03212	391	serine/threonine kinase US3; Provisional	99.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.96
KOG0596|consensus	677		99.96
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.96
KOG0611|consensus	668		99.96
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.96
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.96
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.96
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.96
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
KOG0577|consensus	948		99.96
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.96
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.96
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.96
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.96
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.96
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.96
KOG0192|consensus	362		99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
KOG4279|consensus	1226		99.96
KOG0667|consensus	586		99.95
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.95
PTZ00267	478	NIMA-related protein kinase; Provisional	99.95
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.95
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.95
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.95
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.95
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.95
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.95
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.95
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.95
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.95
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
PHA03211	461	serine/threonine kinase US3; Provisional	99.95
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.95
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.95
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.95
KOG0587|consensus	953		99.95
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.95
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.95
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.95
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.95
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.95
KOG0608|consensus	1034		99.95
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.95
KOG0607|consensus	463		99.95
PHA03210	501	serine/threonine kinase US3; Provisional	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.95
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.95
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.95
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.95
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.95
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.95
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.95
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.95
KOG0671|consensus	415		99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.95
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.94
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.94
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.94
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.94
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.94
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.94
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.94
PLN00009	294	cyclin-dependent kinase A; Provisional	99.94
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.94
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.94
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.94
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.94
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.94
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.94
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.94
KOG0665|consensus	369		99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.94
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.94
KOG0584|consensus	632		99.94
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.94
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.94
KOG0662|consensus	292		99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.94
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.94
KOG4721|consensus	904		99.94
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.94
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.94
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.94
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.94
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.94
KOG4645|consensus	1509		99.94
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.94
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.94
KOG0666|consensus	438		99.94
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.94
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.94
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.94
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.94
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.94
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.94
PHA02988	283	hypothetical protein; Provisional	99.94
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.94
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.94
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.94
KOG0669|consensus	376		99.94
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.94
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.93
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.93
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.93
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.93
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.93
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.93
KOG1006|consensus	361		99.93
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.93
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.93
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.93
KOG0197|consensus	468		99.93
KOG2345|consensus	302		99.93
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.93
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.93
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.93
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.93
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.93
KOG0193|consensus	678		99.93
KOG1989|consensus	738		99.93
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.93
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.93
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.93
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.93
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.93
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.93
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.93
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.93
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.93
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.93
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.93
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.93
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.93
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.93
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.93
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.93
KOG4236|consensus	888		99.93
KOG0586|consensus	596		99.93
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.93
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.93
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.93
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.93
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.93
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.93
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.93
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.93
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.93
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.93
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.93
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.92
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.92
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.92
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.92
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.92
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.92
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.92
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.92
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.92
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.92
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.92
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.92
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.92
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.92
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.92
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.92
KOG1035|consensus	1351		99.92
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.92
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.92
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.92
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.92
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.92
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.92
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.92
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.92
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.92
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.92
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.92
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.92
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.91
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.91
KOG0668|consensus	338		99.91
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.91
KOG1027|consensus	903		99.91
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.91
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.91
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.91
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.91
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.91
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.91
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.91
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.91
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.91
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.91
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.91
KOG0664|consensus	449		99.91
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.91
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.91
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.91
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.91
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.9
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.9
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.9
KOG0670|consensus	752		99.9
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.9
KOG1026|consensus	774		99.89
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.89
KOG0984|consensus	282		99.89
KOG1151|consensus	775		99.89
KOG1095|consensus	1025		99.88
KOG0194|consensus	474		99.86
KOG4257|consensus	974		99.86
KOG0576|consensus	829		99.85
KOG1187|consensus	361		99.85
KOG4250|consensus	732		99.84
KOG0199|consensus	1039		99.84
KOG0200|consensus	609		99.83
KOG1167|consensus	418		99.83
KOG0590|consensus	601		99.83
KOG1290|consensus	590		99.82
KOG0606|consensus	1205		99.82
KOG1024|consensus	563		99.82
KOG1345|consensus	378		99.81
KOG0196|consensus	996		99.81
KOG4278|consensus	1157		99.8
KOG1094|consensus	807		99.8
KOG0603|consensus	612		99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.78
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.77
KOG1025|consensus	1177		99.76
KOG1152|consensus	772		99.75
KOG3653|consensus	534		99.73
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.71
KOG2052|consensus	513		99.69
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.67
KOG1240|consensus	1431		99.66
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.66
KOG4158|consensus	598		99.64
KOG1033|consensus	516		99.59
KOG1164|consensus	322		99.57
KOG1165|consensus	449		99.4
KOG1163|consensus	341		99.38
KOG1023|consensus	484		99.38
KOG0590|consensus	601		99.37
KOG0606|consensus	1205		99.3
KOG0195|consensus	448		99.29
PRK12274	218	serine/threonine protein kinase; Provisional	99.27
PRK09188	365	serine/threonine protein kinase; Provisional	99.21
KOG2137|consensus	700		99.11
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.07
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.03
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.02
KOG1166|consensus	974		99.0
KOG1266|consensus	458		98.93
KOG0601|consensus	524		98.87
smart00090	237	RIO RIO-like kinase.	98.74
COG4248	637	Uncharacterized protein with protein kinase and he	98.63
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.61
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.6
PRK10345	210	hypothetical protein; Provisional	98.55
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.54
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	98.45
KOG1243|consensus	690		98.43
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.39
PRK14879	211	serine/threonine protein kinase; Provisional	98.37
KOG0601|consensus	524		98.34
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.3
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.26
KOG0027|consensus	151		98.1
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.04
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	98.0
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.86
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.81
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.8
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.76
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.63
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.58
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	97.47
KOG3087|consensus	229		97.47
KOG3741|consensus	655		97.43
PRK09902	216	hypothetical protein; Provisional	97.08
KOG1035|consensus	1351		97.06
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.05
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	97.03
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	96.95
cd05027	88	S-100B S-100B: S-100B domain found in proteins sim	96.66
KOG0576|consensus	829		96.63
cd05023	89	S-100A11 S-100A11: S-100A11 domain found in protei	96.4
COG0478	304	RIO-like serine/threonine protein kinase fused to	96.37
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	96.32
KOG0044|consensus	193		96.13
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	95.92
cd05025	92	S-100A1 S-100A1: S-100A1 domain found in proteins	95.83
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	95.73
PTZ00183	158	centrin; Provisional	95.69
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	95.62
PTZ00184	149	calmodulin; Provisional	95.55
cd00052	67	EH Eps15 homology domain; found in proteins implic	95.53
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	95.48
KOG0028|consensus	172		95.3
cd05031	94	S-100A10_like S-100A10_like: S-100A10 domain found	95.23
KOG1826|consensus	2724		95.22
KOG0034|consensus	187		95.05
KOG0027|consensus	151		95.0

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=3.8e-85  Score=704.76  Aligned_cols=287  Identities=29%  Similarity=0.475  Sum_probs=273.8

Q ss_pred             hhhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         190 TMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       190 ~~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      ...++|+..|..+++++|+++|++||....||||.|-++++|||+.+++||..+.+..|.++.+.+.+||+|+||+.+|+
T Consensus        65 ~~~vdDLt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~  144 (1463)
T COG5022          65 FDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYR  144 (1463)
T ss_pred             ccCchhhhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCc----hhhhHhhhcchhhhhhhccccCCCCCCCccceeEEE
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA----KVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQV  345 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~----~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~  345 (488)
                      .|.+.+++|+|||||||||||||++|.||+|++..+++..    +++++|++.||||||||||||+|||||||||||++|
T Consensus       145 ~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI  224 (1463)
T COG5022         145 NLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKI  224 (1463)
T ss_pred             HHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEE
Confidence            9999999999999999999999999999999999987755    899999999999999999999999999999999999


Q ss_pred             EECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCC
Q psy9090         346 TFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRET  425 (488)
Q Consensus       346 ~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~  425 (488)
                      .||..|.|+||+|++|||||||||+ |..+|||||||||||+| +++..++.+++..|.+|.||+++.+       ...+
T Consensus       225 ~Fd~~g~I~GA~I~~YLLEKSRVV~-Q~~~ERNYHIFYQll~G-~~~~~k~~~~~~~~~dY~Yl~~~~~-------~~I~  295 (1463)
T COG5022         225 EFDENGEICGAKIETYLLEKSRVVH-QNKNERNYHIFYQLLAG-DPEELKKLLLLQNPKDYIYLSQGGC-------DKID  295 (1463)
T ss_pred             EECCCCceechhhhhhhhhhhhhcc-CCCCccchhhhhhHhcC-ChHHHHHHhhccChHhhHhHhhcCC-------CcCC
Confidence            9999999999999999999999995 99999999999999999 4556777788899999999998743       4578


Q ss_pred             CCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhhc
Q psy9090         426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA  485 (488)
Q Consensus       426 ~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~~  485 (488)
                      ++||+++|+.|+.||++|||+++++..||+|||||||||||+|.++.+|++.+.++++++
T Consensus       296 gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~g~a~~~~~~~~~  355 (1463)
T COG5022         296 GIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNSVLD  355 (1463)
T ss_pred             CcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecccchhhcCCchHHH
Confidence            999999999999999999999999999999999999999999999889999999988776

>KOG0164|consensus

Probab=100.00  E-value=3.4e-82  Score=634.35  Aligned_cols=275  Identities=31%  Similarity=0.516  Sum_probs=255.8

Q ss_pred             hhhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         190 TMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       190 ~~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      ...++|+..++++++++++++|+.||..+.||||+|+++++|||+..++||+++++..|.++...+.+||+|+|||.||+
T Consensus         7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr   86 (1001)
T KOG0164|consen    7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR   86 (1001)
T ss_pred             ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC----CC-chhhhHhhhcchhhhhhhccccCCCCCCCccceeEE
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ----GA-AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQ  344 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~----g~-~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~  344 (488)
                      .|.+..++|||+|||||||||||++|.||+|++....    |. -.+.+.++++|++|||||||||.||||||||||||.
T Consensus        87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD  166 (1001)
T KOG0164|consen   87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD  166 (1001)
T ss_pred             HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence            9999999999999999999999999999999998753    22 368899999999999999999999999999999999


Q ss_pred             EEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccC-CCCCCCcccccCccCCCCCCCCC
Q psy9090         345 VTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFL-SPGRKYRYLRADVTDDKLPKGPR  423 (488)
Q Consensus       345 ~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l-~~~~~~~yl~~~~~~~~~~~~~~  423 (488)
                      |+||.+|.++||+|++|||||||||. |.+|||||||||||+.|+++. +...++| .++..|.||+++..        .
T Consensus       167 InFDfKGdPvGG~I~nYLLEKSRVv~-Q~~GERNFH~FYQLL~G~~e~-~Lr~l~Ler~~~~Y~ylnqg~~--------~  236 (1001)
T KOG0164|consen  167 INFDFKGDPVGGHITNYLLEKSRVVK-QQPGERNFHIFYQLLRGGEEQ-LLRQLGLERNPQSYNYLNQGSA--------K  236 (1001)
T ss_pred             eeccccCCcccchHhHHHHhhhhhhh-cCcCcchHHHHHHHHcCCcHH-HHHHhccccCcchhhhhhhhhh--------h
Confidence            99999999999999999999999995 999999999999999999775 4555666 58999999998732        2


Q ss_pred             CCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCc
Q psy9090         424 ETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN  474 (488)
Q Consensus       424 ~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~  474 (488)
                      +++++|+.+|+.|+.||++|||+++|++.+++|+|||||||||+|....+.
T Consensus       237 v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed~  287 (1001)
T KOG0164|consen  237 VSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNEDS  287 (1001)
T ss_pred             hcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCcc
Confidence            577889999999999999999999999999999999999999999765433

>PTZ00014 myosin-A; Provisional

Probab=100.00  E-value=2.3e-80  Score=668.27  Aligned_cols=281  Identities=24%  Similarity=0.388  Sum_probs=260.3

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCC-CCCCCChhhHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFK-SRSDNEPHIYAVADSAYQD  270 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~-~~~~~~ph~f~~~d~~~~~  270 (488)
                      .++|+..+..++++.++++|+.||..+.+|||+|+++++|||++.+++|.++++..|.+. ...+.|||+|+|||.||+.
T Consensus        97 ~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~  176 (821)
T PTZ00014         97 TYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALEN  176 (821)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999875 5678899999999999999


Q ss_pred             HHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC--chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEEC
Q psy9090         271 MMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA--AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFG  348 (488)
Q Consensus       271 ~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~--~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~  348 (488)
                      |...+++|+|||||||||||||++|.||+|++..+.|.  .++++.|+++||+|||||||||+|||||||||||++|+|+
T Consensus       177 m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~  256 (821)
T PTZ00014        177 LHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLG  256 (821)
T ss_pred             HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEc
Confidence            99999999999999999999999999999999887664  4699999999999999999999999999999999999999


Q ss_pred             CCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCc
Q psy9090         349 SSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT  428 (488)
Q Consensus       349 ~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~  428 (488)
                      ..|.|.||+|.+|||||||||+ |.+||||||||||||+|+++ +++++++|.++..|+||+++        +...++.|
T Consensus       257 ~~g~i~Ga~I~~YLLEKSRVv~-q~~gERNfHIFYqLl~G~~~-~~~~~l~L~~~~~y~yL~~~--------~~~~~~~d  326 (821)
T PTZ00014        257 EEGGIRYGSIVAFLLEKSRVVT-QEDDERSYHIFYQLLKGAND-EMKEKYKLKSLEEYKYINPK--------CLDVPGID  326 (821)
T ss_pred             CCCcEeeEEEEEEeccCceeee-cCCCCCCEeHHHHHHhCCCH-HHHHHcCCCChHhccccCCC--------CccCCCCc
Confidence            9999999999999999999995 99999999999999999976 56788999999999999854        23357889


Q ss_pred             cHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC----CcccccCChh
Q psy9090         429 NVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA----ENTAELANPE  482 (488)
Q Consensus       429 d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~----~~~~~~~~~~  482 (488)
                      |+++|++|++||+.|||+++|++.||+|||||||||||+|++.+    ++.+.+.+.+
T Consensus       327 D~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~  384 (821)
T PTZ00014        327 DVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDES  384 (821)
T ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCC
Confidence            99999999999999999999999999999999999999998653    3456665543

>KOG0162|consensus

Probab=100.00  E-value=2.9e-80  Score=620.71  Aligned_cols=289  Identities=27%  Similarity=0.420  Sum_probs=274.3

Q ss_pred             hhhhhhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHH
Q psy9090         187 ELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADS  266 (488)
Q Consensus       187 ~~~~~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~  266 (488)
                      +.+...++||..|.+++++++.++|++|+....+|||+|.++++|||++.+++|.+..+..|.++.+.+.|||+|++||+
T Consensus        14 ~~k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladn   93 (1106)
T KOG0162|consen   14 KKKHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADN   93 (1106)
T ss_pred             cceeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHH
Confidence            35566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCc---hhhhHhhhcchhhhhhhccccCCCCCCCccceeE
Q psy9090         267 AYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA---KVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYM  343 (488)
Q Consensus       267 ~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~---~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~  343 (488)
                      .|+.|+..+|+|||+||||||||||+++|.||+|++..+.|.-   .+.+.|+++||+|||||||||+||+||||||||+
T Consensus        94 mY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~  173 (1106)
T KOG0162|consen   94 MYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYL  173 (1106)
T ss_pred             HHHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceE
Confidence            9999999999999999999999999999999999999986643   5789999999999999999999999999999999


Q ss_pred             EEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCC
Q psy9090         344 QVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPR  423 (488)
Q Consensus       344 ~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~  423 (488)
                      +|+|+..|.++||+|++|||||||||. |.++||||||||||++|++. +.+..+++..|+.|.||+.++|       ..
T Consensus       174 Ei~Fs~ggeP~ggkisNfLLEKsRVV~-q~~neRnFHIfYQ~~kgAs~-~~r~t~Gi~~pe~Y~Y~~~sg~-------~s  244 (1106)
T KOG0162|consen  174 EIQFSRGGEPDGGKISNFLLEKSRVVM-QNENERNFHIFYQLTKGASQ-EYRQTFGIQEPEYYVYLNASGC-------YS  244 (1106)
T ss_pred             EEEecCCCCcCcchhhHHHHhhhhhhh-ccCCccceeeehhhhcCccH-HHHhhhCcCCchheeeeccccc-------ee
Confidence            999999999999999999999999996 99999999999999999976 6688899999999999998754       34


Q ss_pred             CCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhhc
Q psy9090         424 ETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA  485 (488)
Q Consensus       424 ~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~~  485 (488)
                      .++.||.++|++|.+||++||+.++|++.||++||+|||||||.|.+ +++.+.+.+.++++
T Consensus       245 ~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~E-e~~~a~V~~~~~~~  305 (1106)
T KOG0162|consen  245 VDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIE-EGNYAAVSDKSVLE  305 (1106)
T ss_pred             ccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEe-eCCcceeccchHHH
Confidence            78899999999999999999999999999999999999999999988 78889999988876

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=100.00  E-value=8.3e-79  Score=648.89  Aligned_cols=284  Identities=30%  Similarity=0.452  Sum_probs=266.3

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++|+.++++|+.||..+.+||++|+++++|||++.+++|.++.+..|.++.....|||+|++|++||+.|.
T Consensus         2 v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~   81 (671)
T cd01381           2 VEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQ   81 (671)
T ss_pred             cchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECCCCc
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGK  352 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~~~~  352 (488)
                      +.+++|+|+|||||||||||++|.+|+|++..+++..++++.|+.+||+|||||||||+|||||||||||++|+|+..|.
T Consensus        82 ~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~  161 (671)
T cd01381          82 REKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGA  161 (671)
T ss_pred             HcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCc
Confidence            99999999999999999999999999999999887788999999999999999999999999999999999999999999


Q ss_pred             eeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCccHHH
Q psy9090         353 LSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAK  432 (488)
Q Consensus       353 ~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d~~~  432 (488)
                      |+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+       ...++.+|+++
T Consensus       162 i~Ga~i~~yLLEksRV~~-q~~gERnfHIFYqLl~g~~~-~~~~~l~L~~~~~y~yL~~~~~-------~~~~~~dD~~~  232 (671)
T cd01381         162 IEGAKIEQYLLEKSRIVR-QARDERNYHIFYCMLAGLST-DEKERLKLGEASDYHYLAQGGC-------ITCEGRDDAKD  232 (671)
T ss_pred             EEEEEEEEEeccCCceee-cCCCCCcHHHHHHHHcCCCH-HHHHHcCCCChhhceeecCCCC-------ccCCCccHHHH
Confidence            999999999999999995 99999999999999999976 5788899999999999987643       23567889999


Q ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC---CcccccCChhhhc
Q psy9090         433 FQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA---ENTAELANPEVAA  485 (488)
Q Consensus       433 ~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~---~~~~~~~~~~~~~  485 (488)
                      |+++++||+.|||+++|+..||+|||||||||||+|.+.+   .+.+++.+.+.++
T Consensus       233 f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~  288 (671)
T cd01381         233 FADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQ  288 (671)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHH
Confidence            9999999999999999999999999999999999998654   3467787776543

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=100.00  E-value=1.1e-78  Score=650.97  Aligned_cols=284  Identities=30%  Similarity=0.479  Sum_probs=264.5

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.+++.|+.||..+.+||++|+++++|||++.+++|.++.+..|.++.....|||+|+||++||+.|
T Consensus         6 ~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m   85 (693)
T cd01377           6 KVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSM   85 (693)
T ss_pred             CcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC----------CchhhhHhhhcchhhhhhhccccCCCCCCCccce
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG----------AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVL  341 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g----------~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk  341 (488)
                      .+.+++|+|||||||||||||++|.||+|++..+.+          ..++++.|+.+||+|||||||||+||||||||||
T Consensus        86 ~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK  165 (693)
T cd01377          86 LQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGK  165 (693)
T ss_pred             HhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccce
Confidence            999999999999999999999999999999988754          2479999999999999999999999999999999


Q ss_pred             eEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCC-CCCcccccCccCCCCCC
Q psy9090         342 YMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVTDDKLPK  420 (488)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~-~~~~yl~~~~~~~~~~~  420 (488)
                      |++|+|+..|.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.+.|.++ ..|+||+++.+      
T Consensus       166 ~i~l~f~~~g~i~Ga~i~~yLLEksRVv~-q~~gERNfHIFYqLl~G~~~-~~~~~l~L~~~~~~y~yL~~~~~------  237 (693)
T cd01377         166 FIRIHFGNTGKIAGADIETYLLEKSRVVF-QASGERNYHIFYQLLSGADP-ELKSMLLLTGNPNDYRYLSQGEL------  237 (693)
T ss_pred             eEEEEECCCCCEEEEEEEEEecccCceee-cCCCCCcHHHHHHHHcCCCH-HHHHHcCCCCchhcCeeeCCCCc------
Confidence            99999999999999999999999999995 99999999999999999976 66788888876 99999987642      


Q ss_pred             CCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeec-CCcccccCChhhhc
Q psy9090         421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESS-AENTAELANPEVAA  485 (488)
Q Consensus       421 ~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~-~~~~~~~~~~~~~~  485 (488)
                        ..++.+|+++|+++++||+.|||+++|+..||+|||||||||||+|.+. .++.+++.+.+.+.
T Consensus       238 --~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~  301 (693)
T cd01377         238 --TIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEAD  301 (693)
T ss_pred             --cCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHH
Confidence              2467889999999999999999999999999999999999999999865 36677887776554

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=100.00  E-value=1.9e-78  Score=648.95  Aligned_cols=277  Identities=31%  Similarity=0.504  Sum_probs=260.0

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++|+.++++|+.||..+.+||++|+++++|||++.+++|.++.+..|.++...+.|||+|+||++||+.|.
T Consensus         2 ~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~   81 (691)
T cd01380           2 KDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMT   81 (691)
T ss_pred             chhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC------chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEE
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA------AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVT  346 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~------~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~  346 (488)
                      +.+++|+|+|||||||||||++|.||+|++..+.+.      .++++.|+++||||||||||||+|||||||||||++|+
T Consensus        82 ~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~  161 (691)
T cd01380          82 RDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQIL  161 (691)
T ss_pred             hcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEE
Confidence            999999999999999999999999999999887543      57999999999999999999999999999999999999


Q ss_pred             ECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCC
Q psy9090         347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETP  426 (488)
Q Consensus       347 ~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~  426 (488)
                      |+..|.|+||+|.+|||||||||. |.+||||||||||||+|++. ++++.++|.++..|+||+++.+       ...++
T Consensus       162 f~~~g~i~Ga~i~~yLLEksRv~~-~~~gErnfHIFYqLl~g~~~-~~~~~l~L~~~~~y~yl~~~~~-------~~~~~  232 (691)
T cd01380         162 FDKRGRIIGANMRTYLLEKSRVVF-QAPGERNYHIFYQLCAGAPS-QELKELHLGHADKFNYLNQGGA-------PTIEG  232 (691)
T ss_pred             ECCCCCEEEEEEEEeeccccceee-cCCCCChhHHHHHHHhCCCH-HHHHHhCCCCHHHCccccCCCC-------ccCCC
Confidence            999999999999999999999995 99999999999999999976 5678899999999999997743       23567


Q ss_pred             CccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCccccc
Q psy9090         427 DTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAEL  478 (488)
Q Consensus       427 ~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~  478 (488)
                      .+|+++|+++++||+.|||+++|+..||+|||||||||||+|.+.+++.+.+
T Consensus       233 ~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~  284 (691)
T cd01380         233 VDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSI  284 (691)
T ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCcccee
Confidence            8899999999999999999999999999999999999999998776555333

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=100.00  E-value=1.5e-77  Score=641.29  Aligned_cols=287  Identities=31%  Similarity=0.505  Sum_probs=262.5

Q ss_pred             hhhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCC-CCCCChhhHHHHHHHH
Q psy9090         190 TMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS-RSDNEPHIYAVADSAY  268 (488)
Q Consensus       190 ~~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~-~~~~~ph~f~~~d~~~  268 (488)
                      ...++|+..+..++++.+++.|+.||..+.+||++|+++++|||++.+++|.++++..|.... ....|||+|++|++||
T Consensus         6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay   85 (692)
T cd01385           6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY   85 (692)
T ss_pred             cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999998876 6788999999999999


Q ss_pred             HHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC---CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEE
Q psy9090         269 QDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG---AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQV  345 (488)
Q Consensus       269 ~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g---~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~  345 (488)
                      +.|.+.+++|+|+|||||||||||++|.||+|++..+..   ..++++.|..+||+|||||||||+|||||||||||++|
T Consensus        86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l  165 (692)
T cd01385          86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV  165 (692)
T ss_pred             HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence            999999999999999999999999999999999987542   35799999999999999999999999999999999999


Q ss_pred             EECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCC
Q psy9090         346 TFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRET  425 (488)
Q Consensus       346 ~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~  425 (488)
                      +|+..|.|+||+|++|||||||||. |.+||||||||||||+|+++ ++++.+.|.++.+|+||+++.+.       ..+
T Consensus       166 ~F~~~g~i~Ga~i~~yLLEksRV~~-q~~gERNfHIFYqll~G~~~-~~~~~~~l~~~~~y~yL~~~~~~-------~~~  236 (692)
T cd01385         166 NYRENGMVRGAVVEKYLLEKSRIVS-QEKDERNYHVFYYLLLGASE-EERKQEFLLKQPDYFYLNQHNLK-------IED  236 (692)
T ss_pred             EECCCCCEEEEEEEEeecccceeee-cCCCCchhHHHHHHHcCCCH-HHHHHhcCCChhcCCeeCCCCCc-------cCC
Confidence            9999999999999999999999995 99999999999999999987 55677777777899999876432       245


Q ss_pred             CCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC----CcccccCChhhhc
Q psy9090         426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA----ENTAELANPEVAA  485 (488)
Q Consensus       426 ~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~----~~~~~~~~~~~~~  485 (488)
                      +.+|+++|+++++||+.|||++++++.||+|||||||||||+|.+.+    ++.+++.+++.++
T Consensus       237 ~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~  300 (692)
T cd01385         237 GEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVD  300 (692)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHH
Confidence            78899999999999999999999999999999999999999998643    4567777776544

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=100.00  E-value=2.5e-77  Score=637.12  Aligned_cols=281  Identities=31%  Similarity=0.477  Sum_probs=259.3

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++++|+.||..+.+||++|+++++|||++.+++|.++++..|.++.  ..|||+|+||++||+.|
T Consensus         9 ~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m   86 (677)
T cd01383           9 GVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADTAYNEM   86 (677)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999998754  46999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECCCC
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSG  351 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~~~  351 (488)
                      ...+++|+|+|||||||||||++|.||+|++..+.+. .+++.|..+||+|||||||||+|||||||||||++|+|+..|
T Consensus        87 ~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g  165 (677)
T cd01383          87 MRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-GIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETG  165 (677)
T ss_pred             HHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCC
Confidence            9999999999999999999999999999999987664 789999999999999999999999999999999999999999


Q ss_pred             ceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCccHH
Q psy9090         352 KLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVA  431 (488)
Q Consensus       352 ~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d~~  431 (488)
                      .|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+       ...++.+|++
T Consensus       166 ~i~ga~i~~yLLEksRv~~-q~~gErNfHIFYqLl~g~~~-~~~~~l~L~~~~~y~yL~~~~~-------~~~~~~dd~~  236 (677)
T cd01383         166 KISGAKIQTFLLEKSRVVQ-CARGERSYHIFYQLCAGAPP-ALKEKLNLKSASEYKYLKQSCC-------YSINGVDDAQ  236 (677)
T ss_pred             cEEEEEEEEEecCCCceec-cCCCCchhHHHHHHHcCCCH-HHHHHhCCCCHHHCceecCCCc-------ccCCCccHHH
Confidence            9999999999999999995 99999999999999999977 5678899999999999987643       2357789999


Q ss_pred             HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhh
Q psy9090         432 KFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVA  484 (488)
Q Consensus       432 ~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~  484 (488)
                      +|+++++||+.|||+++|+..||+|||||||||||+|.+.+ ++.+++.+.+.+
T Consensus       237 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l  290 (677)
T cd01383         237 RFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEAL  290 (677)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHH
Confidence            99999999999999999999999999999999999998654 334555555433

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=100.00  E-value=3.1e-77  Score=638.00  Aligned_cols=284  Identities=32%  Similarity=0.478  Sum_probs=266.1

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++|+.++++|+.||..+.+||++|+++++|||++.+++|.++++..|.++...+.|||+|++|++||+.|.
T Consensus         2 v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~   81 (674)
T cd01378           2 VDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMK   81 (674)
T ss_pred             cchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC---chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECC
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA---AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGS  349 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~---~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~  349 (488)
                      +.+++|+|+|||||||||||++|.+|+|++..+.+.   ..+++.|.+++|+|||||||||+|||||||||||++|+|+.
T Consensus        82 ~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~  161 (674)
T cd01378          82 SENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDF  161 (674)
T ss_pred             HcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECC
Confidence            999999999999999999999999999999887653   35899999999999999999999999999999999999999


Q ss_pred             CCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCcc
Q psy9090         350 SGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTN  429 (488)
Q Consensus       350 ~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d  429 (488)
                      .|.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.+.|.++..|+||+++.+       ...++.+|
T Consensus       162 ~g~i~ga~i~~yLLEksRVv~-~~~gErnfHIFYqll~g~~~-~~~~~l~L~~~~~y~yL~~~~~-------~~~~~~~d  232 (674)
T cd01378         162 KGDPVGGKITNYLLEKSRVVS-QNKGERNFHIFYQLLAGASE-QLLRELGLQKPEYYYYLNQSQC-------YTVDGIDD  232 (674)
T ss_pred             CCCEeeEEEEEeecCCCceee-cCCCCchhHHHHHHHcCCCH-HHHHHhCCCChhhCeeecCCCc-------cCCCCccH
Confidence            999999999999999999995 99999999999999999976 5678899999999999997743       23567889


Q ss_pred             HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhhc
Q psy9090         430 VAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA  485 (488)
Q Consensus       430 ~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~~  485 (488)
                      +++|+++++||+.|||+++|+..||+|||||||||||+|.+.+++.+.+.+.+.++
T Consensus       233 ~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~l~  288 (674)
T cd01378         233 KKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDGAAVISDKDVLD  288 (674)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCCccccCChHHHH
Confidence            99999999999999999999999999999999999999988776667888876554

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=100.00  E-value=8.2e-77  Score=632.87  Aligned_cols=279  Identities=28%  Similarity=0.484  Sum_probs=259.2

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCC-CCCchhhhhccCCCCCCCChhhHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPHIYAVADSAYQD  270 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~  270 (488)
                      .++|+..+..++|+.++++|+.||..+.+||++|+++++|||++.++ +|.++++..|.++...+.|||+|+||++||+.
T Consensus         2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~   81 (674)
T cd01384           2 GVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRA   81 (674)
T ss_pred             CcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999 99999999999998889999999999999999


Q ss_pred             HHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC----CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEE
Q psy9090         271 MMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG----AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVT  346 (488)
Q Consensus       271 ~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g----~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~  346 (488)
                      |.+.+++|+|+|||||||||||++|.+|+|++..+.+    ..++++.|+.+||+|||||||||+|||||||||||++|+
T Consensus        82 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~  161 (674)
T cd01384          82 MINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ  161 (674)
T ss_pred             HHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEE
Confidence            9999999999999999999999999999999988643    347999999999999999999999999999999999999


Q ss_pred             ECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCC
Q psy9090         347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETP  426 (488)
Q Consensus       347 ~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~  426 (488)
                      |+..|.|+||+|.+|||||||||. |.+||||||||||||+| ++ ++++.++|.++..|+||+++.+.       ..++
T Consensus       162 f~~~g~i~Ga~i~~yLLEksRv~~-~~~gErnfHIFYqLl~g-~~-~~~~~l~L~~~~~y~yL~~~~~~-------~~~~  231 (674)
T cd01384         162 FDDYGRISGAAIRTYLLERSRVCQ-ISDPERNYHCFYQLCAA-PP-EDVKKYKLGDPKEFHYLNQSNCF-------ELDG  231 (674)
T ss_pred             ECCCCcEEEEEEEEEecccCceee-cCCCCCchhHHHHHHcC-CH-HHHHHcCCCChHhCccccCCCCc-------cccc
Confidence            999999999999999999999995 99999999999999999 54 56788999999999999976432       3567


Q ss_pred             CccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCC
Q psy9090         427 DTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELAN  480 (488)
Q Consensus       427 ~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~  480 (488)
                      .+|+++|+++++||+.|||+++|+..||+|||||||||||+|.+.+ .+++.+.+
T Consensus       232 ~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~  286 (674)
T cd01384         232 VDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKD  286 (674)
T ss_pred             cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccC
Confidence            8899999999999999999999999999999999999999998664 35555544

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=100.00  E-value=1.7e-76  Score=636.43  Aligned_cols=282  Identities=26%  Similarity=0.374  Sum_probs=253.2

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++|+.++++|+.||..+.+|||+|+++++|||++.+++|.++++..|.++...+.|||+|+||+.||+.|+
T Consensus         2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~   81 (767)
T cd01386           2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL   81 (767)
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC---chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECC
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA---AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGS  349 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~---~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~  349 (488)
                      +.+++|+|+|||||||||||++|.||+|++..+.+.   .+ .+.|..+||+|||||||||+|||||||||||++|+|+.
T Consensus        82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~-~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~  160 (767)
T cd01386          82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVS-VEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQ  160 (767)
T ss_pred             HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccH-HHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECC
Confidence            999999999999999999999999999999886432   23 46899999999999999999999999999999999999


Q ss_pred             CCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCcc
Q psy9090         350 SGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTN  429 (488)
Q Consensus       350 ~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d  429 (488)
                      .|.|+||+|++|||||||||. |.+||||||||||||+|++. ++++.++|.++..+.+++....      ...+++.+|
T Consensus       161 ~g~i~Ga~i~~yLLEKSRVv~-q~~gERNFHIFYqLlaG~~~-~~~~~l~L~~~~~~~~~~~~~~------~~~~d~~~D  232 (767)
T cd01386         161 TGQIASASLQTMLLERSRVAR-RPNGETNFVVFSQLLAGVDG-DLRTELHLEQMAESSSFGMGGL------SKPEDKQKA  232 (767)
T ss_pred             CCcEeEEEEEEEecccCceee-cCCCCCcchhHHHHHhCCCH-HHHHHhcCCCccccchhhcCCC------CCCcCcccH
Confidence            999999999999999999995 99999999999999999976 6678888887655433332211      112567889


Q ss_pred             HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhh
Q psy9090         430 VAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVA  484 (488)
Q Consensus       430 ~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~  484 (488)
                      +++|++|++||+.|||+++|+..||+|||||||||||+|.+ ..+.+.+.+++.+
T Consensus       233 ~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~-~~~~~~~~~~~~~  286 (767)
T cd01386         233 AIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATK-VAGRKQFARPEWA  286 (767)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeee-cCCccccCCHHHH
Confidence            99999999999999999999999999999999999999976 3455677776544

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=100.00  E-value=2e-76  Score=631.13  Aligned_cols=284  Identities=27%  Similarity=0.464  Sum_probs=261.4

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.+++.|+.||..+.+||++|+++++|||++.+++|.++.+..|.++...+.|||+|+||++||+.|
T Consensus         2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m   81 (677)
T cd01387           2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKM   81 (677)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC-CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECCC
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG-AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSS  350 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g-~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~~  350 (488)
                      .+.+++|+|+|||||||||||++|.+|+|++..+.| ...+++.|.++||+|||||||||+|||||||||||++|+| .+
T Consensus        82 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f-~~  160 (677)
T cd01387          82 LDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFL-EG  160 (677)
T ss_pred             HhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEe-cC
Confidence            999999999999999999999999999999988654 4678999999999999999999999999999999999999 47


Q ss_pred             CceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCccH
Q psy9090         351 GKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNV  430 (488)
Q Consensus       351 ~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d~  430 (488)
                      |.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.+.|.++..|+||+++.+.       ..++.+|+
T Consensus       161 g~i~Ga~i~~yLLEksRvv~-q~~gErnfHIFYqll~g~~~-~~~~~~~L~~~~~y~yL~~~~~~-------~~~~~~d~  231 (677)
T cd01387         161 GVIVGAITSQYLLEKSRIVF-QAKNERNYHIFYELLAGLPA-QLRQAFSLQEAETYYYLNQGGNC-------EIAGKSDA  231 (677)
T ss_pred             CcEeEEEEEEEecCCCceee-cCCCCchHHHHHHHHhCCCH-HHHHHhcCCCHHhCchhcCCCcc-------cCCCcCHH
Confidence            99999999999999999995 99999999999999999977 56788999999999999876432       23567899


Q ss_pred             HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC---CcccccCChhhhc
Q psy9090         431 AKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA---ENTAELANPEVAA  485 (488)
Q Consensus       431 ~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~---~~~~~~~~~~~~~  485 (488)
                      ++|+++++||+.|||+++|+..||+|||||||||||+|.+.+   .+.+++.+++.++
T Consensus       232 ~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~  289 (677)
T cd01387         232 DDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQ  289 (677)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHH
Confidence            999999999999999999999999999999999999998654   2346677765443

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=100.00  E-value=4.9e-76  Score=631.79  Aligned_cols=287  Identities=27%  Similarity=0.428  Sum_probs=261.8

Q ss_pred             hhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCC-CCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         191 MHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       191 ~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      ..++|+..+..++++.++++|+.||..+.+||++|+++++|||++.++ +|.++++..|.++.....|||+|++|++||+
T Consensus         4 ~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~   83 (717)
T cd01382           4 KDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYR   83 (717)
T ss_pred             CCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999997 9999999999999888999999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECC
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGS  349 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~  349 (488)
                      .|.+.+++|+|+|||||||||||++|.||+|++..+.+..++++.|..+||+|||||||||+|||||||||||++|+|+.
T Consensus        84 ~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~  163 (717)
T cd01382          84 DMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE  163 (717)
T ss_pred             HHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECC
Confidence            99999999999999999999999999999999988777788999999999999999999999999999999999999999


Q ss_pred             CCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCC-------------
Q psy9090         350 SGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDD-------------  416 (488)
Q Consensus       350 ~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~-------------  416 (488)
                      .|.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.+.|.++..|+||+++....             
T Consensus       164 ~g~i~Ga~i~~yLLEksRVv~-~~~gErNfHIFYqLl~G~~~-~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~  241 (717)
T cd01382         164 KNSVVGGFVSHYLLEKSRICV-QSAEERNYHIFYRLCAGASE-DIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQN  241 (717)
T ss_pred             CCCEeEEEEEEEeccCCceEe-cCCCCCchHHHHHHHhCCCH-HHHHHhcCCChhhCeeecCCccccccccccccccccc
Confidence            999999999999999999995 99999999999999999976 578889999999999999753210             


Q ss_pred             ------CCCCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC--CcccccC
Q psy9090         417 ------KLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA--ENTAELA  479 (488)
Q Consensus       417 ------~~~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~--~~~~~~~  479 (488)
                            ....+...++.+|+++|++|++||+.|||+++|+..||+|||||||||||+|.+.+  ++.+.+.
T Consensus       242 ~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~  312 (717)
T cd01382         242 RKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVK  312 (717)
T ss_pred             ccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceec
Confidence                  00011234678999999999999999999999999999999999999999998654  3344443

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=100.00  E-value=9e-76  Score=622.91  Aligned_cols=289  Identities=36%  Similarity=0.575  Sum_probs=260.6

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++|+.++++|+.||..+.+||++|+++++|||++.+++|.++.+..|.++.....|||+|++|+.||+.|.
T Consensus         2 ~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~   81 (653)
T cd01379           2 MDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLV   81 (653)
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC-CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECCCC
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG-AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSG  351 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g-~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~~~  351 (488)
                      +..++|+|+|||||||||||++|.+|+|++..+.+ ..++++.|..+||+|||||||||+|||||||||||++|+|+.+|
T Consensus        82 ~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g  161 (653)
T cd01379          82 TYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSG  161 (653)
T ss_pred             hcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCC
Confidence            99999999999999999999999999999988765 45789999999999999999999999999999999999999999


Q ss_pred             ceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCccHH
Q psy9090         352 KLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVA  431 (488)
Q Consensus       352 ~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d~~  431 (488)
                      .|+||+|.+|||||||||. |.+||||||||||||+|++.+++.+.|.|.++..|+||+++.+.. . .+. .+..+|++
T Consensus       162 ~i~Ga~i~~yLLEksRVv~-q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~-~-~~~-~~~~~~~~  237 (653)
T cd01379         162 AVVGARISEYLLEKSRVVH-QAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRV-V-QDI-TSNKFYKD  237 (653)
T ss_pred             cEEEEEEEEEeccCCceec-cCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccc-c-CCC-ccchhHHH
Confidence            9999999999999999995 999999999999999999875555778999999999998764321 0 111 22335688


Q ss_pred             HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC----CcccccCChhhhc
Q psy9090         432 KFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA----ENTAELANPEVAA  485 (488)
Q Consensus       432 ~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~----~~~~~~~~~~~~~  485 (488)
                      +|+++++||+.|||+++|++.||+|||||||||||+|++..    .+.+.+.+.+.++
T Consensus       238 ~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~  295 (653)
T cd01379         238 QFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALE  295 (653)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHH
Confidence            99999999999999999999999999999999999997653    2346677765443

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd00124 MYSc Myosin motor domain

Probab=100.00  E-value=5.1e-75  Score=625.75  Aligned_cols=284  Identities=35%  Similarity=0.551  Sum_probs=264.1

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++++.+++.|+.||..+.+||++|+++++|||++.+++|.++.+..|.++.....|||+|++|++||+.|.
T Consensus         2 ~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~   81 (679)
T cd00124           2 VDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNML   81 (679)
T ss_pred             CcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC-CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECCCC
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG-AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSG  351 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g-~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~~~  351 (488)
                      ..+++|+|+|||||||||||++|.+|+|++..+.+ ...+++.|..++|+|||||||||++||||||||||++|+|+..|
T Consensus        82 ~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g  161 (679)
T cd00124          82 RDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETG  161 (679)
T ss_pred             hcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCC
Confidence            99999999999999999999999999999998876 56799999999999999999999999999999999999999999


Q ss_pred             ceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCccHH
Q psy9090         352 KLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVA  431 (488)
Q Consensus       352 ~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~d~~  431 (488)
                      .|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+.       ..++.+|++
T Consensus       162 ~i~ga~i~~yLLEksRv~~-~~~gErnfHIFYqll~g~~~-~~~~~l~L~~~~~y~yL~~~~~~-------~~~~~~d~~  232 (679)
T cd00124         162 KISGAKITTYLLEKSRVVS-QEPGERNFHIFYQLLAGASP-EERKKLGLKRPESYRYLNQGGCN-------DVDGIDDAE  232 (679)
T ss_pred             cEeEEEEEEEEcccceeec-cCCCCCchhHHHHHHcCCCH-HHHHhcCCCCcccCeeeCCCCcc-------cCCCCCHHH
Confidence            9999999999999999995 99999999999999999966 67888999999999999877432       236788999


Q ss_pred             HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcc---cccCChhhhc
Q psy9090         432 KFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENT---AELANPEVAA  485 (488)
Q Consensus       432 ~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~---~~~~~~~~~~  485 (488)
                      +|+++++||+.|||+++|+..||+|||||||||||+|.+.+++.   +.+.+.+.++
T Consensus       233 ~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~  289 (679)
T cd00124         233 EFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLS  289 (679)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHH
Confidence            99999999999999999999999999999999999998765433   5676666544

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>smart00242 MYSc Myosin

Probab=100.00  E-value=9.1e-75  Score=621.96  Aligned_cols=285  Identities=31%  Similarity=0.486  Sum_probs=263.7

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.+++.|+.||..+.+||++|+++++|||++.+++|.++++..|..+.....|||+|++|++||+.|
T Consensus         7 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m   86 (677)
T smart00242        7 GVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNM   86 (677)
T ss_pred             CcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC---CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEEC
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG---AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFG  348 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g---~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~  348 (488)
                      .+.+++|+|+|||||||||||++|.+|+|++..+.+   ..++++.|..++|+|||||||||++||||||||||++|+|+
T Consensus        87 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~  166 (677)
T smart00242       87 LNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFD  166 (677)
T ss_pred             HhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEEC
Confidence            999999999999999999999999999999998765   46799999999999999999999999999999999999999


Q ss_pred             CCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCc
Q psy9090         349 SSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT  428 (488)
Q Consensus       349 ~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~  428 (488)
                      ..|.|.||+|.+|||||||||. |.+||||||||||||+|+++ ++++.+.|.++..|+||+++.+       ...++.+
T Consensus       167 ~~g~i~ga~i~~yLLEksRv~~-~~~gErnfHIFYqLl~g~~~-~~~~~l~L~~~~~y~yL~~~~~-------~~~~~~~  237 (677)
T smart00242      167 AKGKIVGAKIETYLLEKSRVVS-QAKGERNYHIFYQLLAGASE-ELKKELGLKSPEDYRYLNQGGC-------LSVDGID  237 (677)
T ss_pred             CCCcEeEEEEEEeecCCceEEe-cCCCCCchHHHHHHHcCCCH-HHHHhcCCCChhhCceeCCCCC-------ccCCCCC
Confidence            9999999999999999999995 99999999999999999976 6778899999999999987632       2356778


Q ss_pred             cHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccc--cCChhhhc
Q psy9090         429 NVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAE--LANPEVAA  485 (488)
Q Consensus       429 d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~--~~~~~~~~  485 (488)
                      |+++|+++++||+.|||+++|+..||+|||||||||||+|.+.+++++.  +.+.+.++
T Consensus       238 d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~  296 (677)
T smart00242      238 DAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELE  296 (677)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHH
Confidence            9999999999999999999999999999999999999999876644432  55555443

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>KOG0163|consensus

Probab=100.00  E-value=2e-75  Score=586.82  Aligned_cols=289  Identities=27%  Similarity=0.435  Sum_probs=263.9

Q ss_pred             hhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCC-CCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         191 MHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       191 ~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      .+++|-..+..+++..++.+++-||..+.+||||.+|+++|||+...+ +|.++.+..|.+++....|||+|+|||++|+
T Consensus        57 k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~R  136 (1259)
T KOG0163|consen   57 KDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYR  136 (1259)
T ss_pred             cccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHH
Confidence            367788888999999999999999999999999999999999999986 8999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECC
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGS  349 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~  349 (488)
                      .|+..+..|+|++||||||||||++|.+++|++.+-+....++..|+.+||+|||||||||+||+||||||||++|||+.
T Consensus       137 dMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~d  216 (1259)
T KOG0163|consen  137 DMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDD  216 (1259)
T ss_pred             HHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcC
Confidence            99999999999999999999999999999999988776778999999999999999999999999999999999999999


Q ss_pred             CCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCcc--------C-----C
Q psy9090         350 SGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT--------D-----D  416 (488)
Q Consensus       350 ~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~--------~-----~  416 (488)
                      +|.++||-|++||||||||+. |..+|||||||||||||+++ ++++++.|+.|++|+||+.+.+        .     +
T Consensus       217 k~~VvGGyvSHYLLEkSRiC~-Qaa~ERNYHiFY~LiAGas~-dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~n  294 (1259)
T KOG0163|consen  217 KGQVVGGYVSHYLLEKSRICR-QAAEERNYHIFYQLIAGASP-DLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGN  294 (1259)
T ss_pred             CCceechhhhHHHHHHhHHHH-hhhcccchhHHHHHHcCCCH-HHHHHhccCCchhhhHHhcchhhhccCcchhhcCccc
Confidence            999999999999999999996 99999999999999999987 7889999999999999984411        0     1


Q ss_pred             CCC------CCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC---CcccccCCh
Q psy9090         417 KLP------KGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA---ENTAELANP  481 (488)
Q Consensus       417 ~~~------~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~---~~~~~~~~~  481 (488)
                      ..+      +..+++-+||-.+|..+..||..+|.|++|+..||++||||||||||+|++..   .++|.+.+.
T Consensus       295 r~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~  368 (1259)
T KOG0163|consen  295 RKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNG  368 (1259)
T ss_pred             ccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccC
Confidence            110      22345566999999999999999999999999999999999999999998665   556776654

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=6.3e-72  Score=608.56  Aligned_cols=284  Identities=34%  Similarity=0.551  Sum_probs=247.6

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..+..++|+.+++.|+.||..+.+||++|+++++|||++.+++|.++.+..|.++.....|||+|++|++||+.|.
T Consensus         1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~   80 (689)
T PF00063_consen    1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML   80 (689)
T ss_dssp             -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred             CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence            57899999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCc-----hhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEE
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA-----KVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTF  347 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~-----~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~  347 (488)
                      ..+++|+|||||||||||||++|.||+|++..+.+..     ++++.|..+++||||||||||++|+||||||||++|+|
T Consensus        81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f  160 (689)
T PF00063_consen   81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF  160 (689)
T ss_dssp             HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred             ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence            9999999999999999999999999999999877654     79999999999999999999999999999999999999


Q ss_pred             CCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCC
Q psy9090         348 GSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD  427 (488)
Q Consensus       348 ~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~  427 (488)
                      +..|.++||+|.+|||||||||. |.+||||||||||||+|++. ++++.+.|.++..|+||+++.+       ...++.
T Consensus       161 ~~~~~~~g~~i~~ylLEksRv~~-~~~~ErnfhiFYqll~G~~~-~~~~~l~L~~~~~~~yL~~~~~-------~~~~~~  231 (689)
T PF00063_consen  161 DDSGQIVGAKIETYLLEKSRVVR-QPPGERNFHIFYQLLAGADD-EERKELRLNDASDYRYLNQSGC-------STIPGI  231 (689)
T ss_dssp             ETTSSEEEEEEEEEEE-GGGGT----TTS-SBHHHHHHHHTSSH-HHHHHTT-S-GGGSTTCCTTSS-------SSBTTC
T ss_pred             cccccccccceecccccccceee-ccccccccchhhhhhhccch-hhhhcccccccccccceecccc-------cccCCc
Confidence            99999999999999999999995 99999999999999999987 4588899999999999987532       224567


Q ss_pred             ccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhhc
Q psy9090         428 TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAA  485 (488)
Q Consensus       428 ~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~~  485 (488)
                      +|+++|+++++||+.|||+++++..||+|||||||||||+|++.. ++.+++.+++.++
T Consensus       232 ~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~  290 (689)
T PF00063_consen  232 DDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQ  290 (689)
T ss_dssp             THHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHH
T ss_pred             cCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHH
Confidence            899999999999999999999999999999999999999998776 5567788877554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0161|consensus

Probab=100.00  E-value=5.7e-72  Score=630.14  Aligned_cols=284  Identities=31%  Similarity=0.503  Sum_probs=269.0

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++||+.+..+++++++.+|+.||.+..||||.|..++.|||++.+|||.++++.+|.++.+.++|||+|+|+|.||++|
T Consensus        83 k~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~m  162 (1930)
T KOG0161|consen   83 KVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNM  162 (1930)
T ss_pred             ccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC-------chhhhHhhhcchhhhhhhccccCCCCCCCccceeEE
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA-------AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQ  344 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~-------~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~  344 (488)
                      ...+++|+|||+|||||||||+||.+|+|++..+.+.       ...+++|...||+|||||||+|++|||||||||||+
T Consensus       163 L~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfir  242 (1930)
T KOG0161|consen  163 LQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIR  242 (1930)
T ss_pred             HhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEE
Confidence            9999999999999999999999999999999987654       678999999999999999999999999999999999


Q ss_pred             EEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCC-CCCCcccccCccCCCCCCCCC
Q psy9090         345 VTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSP-GRKYRYLRADVTDDKLPKGPR  423 (488)
Q Consensus       345 ~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~-~~~~~yl~~~~~~~~~~~~~~  423 (488)
                      |+|+..|.|+||.|.+||||||||++ |+++||||||||||++|.++ .++..++|.. +.+|.|+.++..        .
T Consensus       243 I~F~~~G~i~~a~Ie~yLLEKsRv~~-Q~~~Er~yhiFyqlls~~~~-~l~~~l~L~~~~~~Y~f~~~~~~--------~  312 (1930)
T KOG0161|consen  243 IHFDATGKIAGADIETYLLEKSRVIR-QAPGERNYHIFYQLLSGADP-ELKEELLLSDNVKDYKFLSNGES--------T  312 (1930)
T ss_pred             EecCCCCccchhhHHHHHHHHhHhhc-cCcchhHHHHHHHHHhCCCH-HHHHHHhhcccchhhhhhccccC--------C
Confidence            99999999999999999999999995 99999999999999999965 6677777765 899999977632        3


Q ss_pred             CCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeec-CCcccccCChhhhc
Q psy9090         424 ETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESS-AENTAELANPEVAA  485 (488)
Q Consensus       424 ~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~-~~~~~~~~~~~~~~  485 (488)
                      .++++|+++|+.|..||++|||+++|+.+||+|+|||||||||.|.+. .++++++.+.++|+
T Consensus       313 i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~  375 (1930)
T KOG0161|consen  313 IPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVAD  375 (1930)
T ss_pred             CCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCchHHH
Confidence            789999999999999999999999999999999999999999999876 48999999998886

>KOG0160|consensus

Probab=100.00  E-value=5.6e-65  Score=537.09  Aligned_cols=281  Identities=31%  Similarity=0.497  Sum_probs=262.5

Q ss_pred             hhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCC-CCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         191 MHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       191 ~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      ..++|+..+..+.++.++.+|..||..+.+||+.|.++++|||+++++ +|.++.+..|. ....+..||+|++++.||+
T Consensus         8 ~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~   86 (862)
T KOG0160|consen    8 MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYR   86 (862)
T ss_pred             CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHH
Confidence            477899999999999999999999999999999999999999999999 99999999999 7788899999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC--CchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEE
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG--AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTF  347 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g--~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~  347 (488)
                      .|+....+|+|+||||||||||+++|.+|+|++..+.+  .-++|+.|+.+||+|||||||||+|||||||||||++|+|
T Consensus        87 ~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~F  166 (862)
T KOG0160|consen   87 DMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITF  166 (862)
T ss_pred             HhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhh
Confidence            99999999999999999999999999999999999988  6789999999999999999999999999999999999999


Q ss_pred             CCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCC
Q psy9090         348 GSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD  427 (488)
Q Consensus       348 ~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~  427 (488)
                      +..|.|.||+|.+|||||||||. +.++|||||||||+|+|.+  +++++|.|..+..|+|++++.       +....+.
T Consensus       167 d~~~~I~GA~~~TYLLekSRv~~-~~~~ernyhiFyQlca~~~--~~~~~l~L~~~~~f~yl~q~~-------~~~i~~v  236 (862)
T KOG0160|consen  167 DQQGRISGAKIRTYLLEKSRVVQ-LSAPERNYHIFYQLCAGAP--EELEKLKLGTLRRFSYLNQSA-------CVLISGV  236 (862)
T ss_pred             hhhcccccceeeeEEeecceeee-cCccccchHHHHHHhcCCc--hhhhccCcCccccceeccccc-------chhhccc
Confidence            99999999999999999999995 9999999999999999976  567889999999999999874       3346788


Q ss_pred             ccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChh
Q psy9090         428 TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPE  482 (488)
Q Consensus       428 ~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~  482 (488)
                      +|+++|..++.||..+|++.++++.||+++||+||||||+|....++++...-.+
T Consensus       237 ~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~  291 (862)
T KOG0160|consen  237 SDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD  291 (862)
T ss_pred             ccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch
Confidence            9999999999999999999999999999999999999999987765544443333

>KOG4229|consensus

Probab=100.00  E-value=2.8e-55  Score=474.73  Aligned_cols=288  Identities=34%  Similarity=0.523  Sum_probs=266.9

Q ss_pred             hhhhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCC-CCCchhhhhccCCCCCCCChhhHHHHHHH
Q psy9090         189 QTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPHIYAVADSA  267 (488)
Q Consensus       189 ~~~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph~f~~~d~~  267 (488)
                      +...++|+..+..+++..+..++..||....+|+|++.+++++||+...+ +|...|+..|.++...+.+||+|+++|.+
T Consensus        59 ~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~  138 (1062)
T KOG4229|consen   59 QVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLA  138 (1062)
T ss_pred             ccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhH
Confidence            33467899999999999999999999999999999999999999999999 99999999999899999999999999999


Q ss_pred             HHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhc-CCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEE
Q psy9090         268 YQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLG-QGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVT  346 (488)
Q Consensus       268 ~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~-~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~  346 (488)
                      |..|....++|||+||||||+||||+++.++++++..+ +....+++.|+.++|+|||||||+|.+||||||||||+++.
T Consensus       139 y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~  218 (1062)
T KOG4229|consen  139 YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVN  218 (1062)
T ss_pred             HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEec
Confidence            99999999999999999999999999999999999999 55677889999999999999999999999999999999999


Q ss_pred             ECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCC-C
Q psy9090         347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRE-T  425 (488)
Q Consensus       347 ~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~-~  425 (488)
                      |...|.+.||+|..||||||||+. |+++||||||||++++|++. .++..+.|+.+++|.||+++...       ++ +
T Consensus       219 ~~~~g~i~Gaki~~yllEKsr~~~-q~~~e~nyhify~~~agl~~-~e~~~~~l~~~e~y~yL~~~~~~-------~~~d  289 (1062)
T KOG4229|consen  219 FRKTGIIEGAKIVEYLLEKSRLVI-QAGGERNYHIFYYLLAGLSE-NELKAFVLGEAENYEYLEQGALF-------TISD  289 (1062)
T ss_pred             cccCCCCCcchHHHHHHHHHHHHH-hcCCCcccccchhheeccch-hhhhHHhhcCCCCHHHhhccccc-------cccc
Confidence            999999999999999999999996 99999999999999999988 67888999999999999987432       23 6


Q ss_pred             CCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC---CcccccCChhhhc
Q psy9090         426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA---ENTAELANPEVAA  485 (488)
Q Consensus       426 ~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~---~~~~~~~~~~~~~  485 (488)
                      +.++.++|+++..||.++||.+++++.||+++|||||+|||.|.+..   .+.+++.+.+.+.
T Consensus       290 ~~~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~  352 (1062)
T KOG4229|consen  290 GEDDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVE  352 (1062)
T ss_pred             hHHHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHH
Confidence            77899999999999999999999999999999999999999997554   4456676665543

>KOG0598|consensus

Probab=100.00  E-value=1.2e-39  Score=311.67  Aligned_cols=181  Identities=33%  Similarity=0.584  Sum_probs=163.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|..++.|+.+|+.||.|||++|||||||||+|||++.+|+|+|+|||+|+..........+++||+.|||||++..  
T Consensus       122 F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~--  199 (357)
T KOG0598|consen  122 FSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLG--  199 (357)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhc--
Confidence            578999999999999999999999999999999999999999999999999977666677788999999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC----C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP----Y  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----s  156 (488)
                         .+|+..+|+||||+++|+|++|.+||.+.+.......+.+...+.  .+.-++.+++++++++|..||.+|.    +
T Consensus       200 ---~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~--~p~~ls~~ardll~~LL~rdp~~RLg~~~d  274 (357)
T KOG0598|consen  200 ---KGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPL--PPGYLSEEARDLLKKLLKRDPRQRLGGPGD  274 (357)
T ss_pred             ---CCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCC--CCccCCHHHHHHHHHHhccCHHHhcCCCCC
Confidence               789999999999999999999999999999888888888775322  2445899999999999999999996    6


Q ss_pred             HHHHhcCcCCCCCCCCcccccccccccccchh
Q psy9090         157 MSELLEHPFITSLPENDLHLSTVNCQYKDQEL  188 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~~~~~~~~~~~  188 (488)
                      +.++.+||||++++|+.+......+++.+...
T Consensus       275 ~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~  306 (357)
T KOG0598|consen  275 AEEIKRHPFFKGINWEKLLAKKLSPPFKPNVT  306 (357)
T ss_pred             hHHhhcCcccccCCHHHHHhcCCCCCeecCCC
Confidence            88999999999999999988888888877543

>KOG0616|consensus

Probab=100.00  E-value=1.1e-37  Score=288.93  Aligned_cols=174  Identities=29%  Similarity=0.565  Sum_probs=158.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|..+++|+.||+.||+|||+++|++|||||+|||++.+|++||+|||+++...   ..+.+.||||.|+|||++++  
T Consensus       141 F~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~---~rT~TlCGTPeYLAPEii~s--  215 (355)
T KOG0616|consen  141 FSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVS---GRTWTLCGTPEYLAPEIIQS--  215 (355)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEec---CcEEEecCCccccChHHhhc--
Confidence            6899999999999999999999999999999999999999999999999998765   34778999999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         .+|+.++|+|||||++|||+.|.+||.+.++.....+|+...   ...|+.+++++++||+++|+.|-.+|.     
T Consensus       216 ---k~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~---v~fP~~fs~~~kdLl~~LL~vD~t~R~gnlkn  289 (355)
T KOG0616|consen  216 ---KGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGK---VKFPSYFSSDAKDLLKKLLQVDLTKRFGNLKN  289 (355)
T ss_pred             ---CCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCc---ccCCcccCHHHHHHHHHHHhhhhHhhhcCcCC
Confidence               789999999999999999999999999999988888887753   335678899999999999999999993     


Q ss_pred             CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                      ...+|.+||||+++.|..+....+..++.+
T Consensus       290 G~~dIk~H~wF~~v~W~~i~~r~ie~P~~p  319 (355)
T KOG0616|consen  290 GVEDIKNHPWFKGVDWEAILQRKIEPPFEP  319 (355)
T ss_pred             CccccccCcccccccHHHHhhccccCCCCC
Confidence            568999999999999999888877777766

>KOG0581|consensus

Probab=100.00  E-value=3.4e-37  Score=294.95  Aligned_cols=167  Identities=35%  Similarity=0.730  Sum_probs=149.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++|.....++.+|++||.|||. ++||||||||+|||++..|+|||||||.++.....  ...+++||..|||||.+.+ 
T Consensus       175 i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS--~a~tfvGT~~YMsPERi~g-  251 (364)
T KOG0581|consen  175 IPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS--IANTFVGTSAYMSPERISG-  251 (364)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh--hcccccccccccChhhhcC-
Confidence            5789999999999999999995 99999999999999999999999999999887654  6678999999999999987 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-----ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-----HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                          ..|+.++||||||+.+.|+.+|+.||...     ...+.+..|+.+++|..+. ..||+++++||..||++||.+|
T Consensus       252 ----~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~-~~fS~ef~~FV~~CL~Kdp~~R  326 (364)
T KOG0581|consen  252 ----ESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPE-GEFSPEFRSFVSCCLRKDPSER  326 (364)
T ss_pred             ----CcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCc-ccCCHHHHHHHHHHhcCCcccC
Confidence                68999999999999999999999999764     5567777888777776543 2599999999999999999999


Q ss_pred             CCHHHHhcCcCCCCCCCCccc
Q psy9090         155 PYMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       155 ps~~ell~hp~f~~~~~~~~~  175 (488)
                      ||+.++++|||++........
T Consensus       327 ~s~~qLl~Hpfi~~~~~~~vd  347 (364)
T KOG0581|consen  327 PSAKQLLQHPFIKKFEDPNVD  347 (364)
T ss_pred             CCHHHHhcCHHHhhccccccc
Confidence            999999999999987655443

>KOG0615|consensus

Probab=100.00  E-value=5.1e-38  Score=302.76  Aligned_cols=168  Identities=30%  Similarity=0.525  Sum_probs=142.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC---CcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~---~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +.|...+.+++||+.||.|||++||+||||||+|||+..+   -.+||+|||+|+.... .....+.||||.|.|||++.
T Consensus       273 l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~-~sfm~TlCGTpsYvAPEVl~  351 (475)
T KOG0615|consen  273 LREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGE-GSFMKTLCGTPSYVAPEVLA  351 (475)
T ss_pred             cccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhcccc-ceehhhhcCCccccChhhee
Confidence            4577889999999999999999999999999999999876   6799999999998764 36678999999999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH-HHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR-ALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +...  ..+..++|+||+||+||-+++|.+||.+..... ...++.++..... .....+|+++++||.+||..||++||
T Consensus       352 ~kg~--~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~  429 (475)
T KOG0615|consen  352 SKGV--EYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRP  429 (475)
T ss_pred             cCCe--ecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCc
Confidence            7422  334458999999999999999999998766555 6667776654333 12345699999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPE  171 (488)
Q Consensus       156 s~~ell~hp~f~~~~~  171 (488)
                      |++++|+||||+..+-
T Consensus       430 s~~eaL~hpW~~~~~~  445 (475)
T KOG0615|consen  430 SADEALNHPWFKDAPC  445 (475)
T ss_pred             CHHHHhcChhhhcccc
Confidence            9999999999997653

>KOG0575|consensus

Probab=100.00  E-value=5.2e-37  Score=309.55  Aligned_cols=159  Identities=35%  Similarity=0.636  Sum_probs=146.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++++++||+.||.|||+++|+|||||..|+|++++.+|||+|||+|........+..+.||||.|+|||++..  
T Consensus       115 ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k--  192 (592)
T KOG0575|consen  115 LTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNK--  192 (592)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhcc--
Confidence            689999999999999999999999999999999999999999999999999998877788899999999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++..+||||+||++|.||+|+|||....-.+...++....   ...|..+|.++++||.+||++||.+|||++++
T Consensus       193 ---~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~---Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~v  266 (592)
T KOG0575|consen  193 ---SGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNE---YSMPSHLSAEAKDLIRKLLRPNPSERPSLDEV  266 (592)
T ss_pred             ---CCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcC---cccccccCHHHHHHHHHHhcCCcccCCCHHHH
Confidence               778999999999999999999999999987777766666542   33466899999999999999999999999999


Q ss_pred             hcCcCCC
Q psy9090         161 LEHPFIT  167 (488)
Q Consensus       161 l~hp~f~  167 (488)
                      |.|+||+
T Consensus       267 L~h~Ff~  273 (592)
T KOG0575|consen  267 LDHPFFK  273 (592)
T ss_pred             hcCHhhh
Confidence            9999994

>KOG0592|consensus

Probab=100.00  E-value=1.6e-36  Score=301.40  Aligned_cols=171  Identities=27%  Similarity=0.514  Sum_probs=149.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-------------CccccccCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-------------DKKKTFLGS   67 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-------------~~~~~~~gt   67 (488)
                      |+|..+++++.||+.||+|||++|||||||||+|||++.+|++||+|||.++.+.+..             ....+++||
T Consensus       171 fde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGT  250 (604)
T KOG0592|consen  171 FDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGT  250 (604)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeee
Confidence            5788999999999999999999999999999999999999999999999998654221             112568999


Q ss_pred             CccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhc
Q psy9090          68 PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECL  147 (488)
Q Consensus        68 ~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L  147 (488)
                      ..|.+||++..     ...++.+|+|+|||++|+|+.|.+||.+.++.....+|+.-   ....+..+++.+++||+++|
T Consensus       251 AeYVSPElL~~-----~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l---~y~fp~~fp~~a~dLv~KLL  322 (604)
T KOG0592|consen  251 AEYVSPELLND-----SPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQAL---DYEFPEGFPEDARDLIKKLL  322 (604)
T ss_pred             ecccCHHHhcC-----CCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHh---cccCCCCCCHHHHHHHHHHH
Confidence            99999999986     56788999999999999999999999999977766666653   22346778999999999999


Q ss_pred             ccCCCCCCCHHHHhcCcCCCCCCCCccccccc
Q psy9090         148 EKNPEHRPYMSELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       148 ~~dP~~Rps~~ell~hp~f~~~~~~~~~~~~~  179 (488)
                      ..||.+|+|+++|.+||||.+++|+.+...+.
T Consensus       323 v~dp~~Rlt~~qIk~HpFF~~Vdw~nlw~~~P  354 (604)
T KOG0592|consen  323 VRDPSDRLTSQQIKAHPFFEGVDWENLWQQTP  354 (604)
T ss_pred             ccCccccccHHHHhhCcccccCChhhhhhcCC
Confidence            99999999999999999999999998655543

>KOG0694|consensus

Probab=100.00  E-value=9.6e-37  Score=310.96  Aligned_cols=182  Identities=32%  Similarity=0.533  Sum_probs=164.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|..++.|++.|+.||+|||++||||||||.+|||+|..|++||+|||+++........+.+++|||.|+|||++.+  
T Consensus       465 F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e--  542 (694)
T KOG0694|consen  465 FSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTE--  542 (694)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhcc--
Confidence            689999999999999999999999999999999999999999999999999987655578899999999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..|+.++|+|||||++|+|+.|..||.+.+..+....|+....   ..|..+|.++.++|+++|.++|++|+.    
T Consensus       543 ---~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~---~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~  616 (694)
T KOG0694|consen  543 ---QSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEV---RYPRFLSKEAIAIMRRLLRKNPEKRLGSGER  616 (694)
T ss_pred             ---CcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCC---CCCCcccHHHHHHHHHHhccCcccccCCCCC
Confidence               7899999999999999999999999999998877777765422   246778999999999999999999985    


Q ss_pred             -HHHHhcCcCCCCCCCCcccccccccccccchhhh
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYKDQELQT  190 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  190 (488)
                       +.+|..||||++++|+.+....+.++|.+.....
T Consensus       617 d~~~i~~hpFFr~i~w~~L~~r~i~PPf~P~i~~~  651 (694)
T KOG0694|consen  617 DAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGP  651 (694)
T ss_pred             CchhhhhCCccccCCHHHHhhccCCCCCCcccCCh
Confidence             5889999999999999999999999887754433

>KOG0033|consensus

Probab=100.00  E-value=1.9e-35  Score=267.14  Aligned_cols=162  Identities=30%  Similarity=0.515  Sum_probs=142.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC---CcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~---~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      .||..+.++++||+++|.|||.+||||||+||+|+|+-+.   .-+||+|||++.... .......++|||.|+|||+++
T Consensus       107 ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~-~g~~~~G~~GtP~fmaPEvvr  185 (355)
T KOG0033|consen  107 YSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN-DGEAWHGFAGTPGYLSPEVLK  185 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC-CccccccccCCCcccCHHHhh
Confidence            3788999999999999999999999999999999999643   359999999999887 335667789999999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     .+|+..+|||+.||+||.|+.|.+||.+.+...+..+|..+... +.+..+.+++++++|+++||..||.+|+|
T Consensus       186 k-----dpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIt  260 (355)
T KOG0033|consen  186 K-----DPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRIT  260 (355)
T ss_pred             c-----CCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhcc
Confidence            6     78999999999999999999999999998877877888765432 11234567999999999999999999999


Q ss_pred             HHHHhcCcCCCC
Q psy9090         157 MSELLEHPFITS  168 (488)
Q Consensus       157 ~~ell~hp~f~~  168 (488)
                      +.++|+|||+++
T Consensus       261 a~EAL~HpWi~~  272 (355)
T KOG0033|consen  261 ADEALKHPWICN  272 (355)
T ss_pred             HHHHhCCchhcc
Confidence            999999999986

>KOG0578|consensus

Probab=100.00  E-value=2.4e-35  Score=295.32  Aligned_cols=163  Identities=42%  Similarity=0.809  Sum_probs=155.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+|+.|++++++||+|||.+||+|||||.+|||++.+|.+||+|||+|..+........+.+|||+|||||++..  
T Consensus       366 ~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtr--  443 (550)
T KOG0578|consen  366 MTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTR--  443 (550)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhh--
Confidence            689999999999999999999999999999999999999999999999999988877677888999999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|++++||||||+++.||+-|.+||-..++...++.+..+..|.+..+..+|+.+++|+.+||..||.+|+++.+|
T Consensus       444 ---k~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eL  520 (550)
T KOG0578|consen  444 ---KPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKEL  520 (550)
T ss_pred             ---cccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHH
Confidence               78999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |+||||+.
T Consensus       521 L~HpFl~~  528 (550)
T KOG0578|consen  521 LEHPFLKM  528 (550)
T ss_pred             hcChhhhh
Confidence            99999954

>KOG0605|consensus

Probab=100.00  E-value=6.8e-35  Score=289.99  Aligned_cols=172  Identities=28%  Similarity=0.499  Sum_probs=146.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccc-----------------------c
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-----------------------T   57 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~-----------------------~   57 (488)
                      |+|+++++|+.+++.||..+|+.|+|||||||+|+||+..|++||+|||+|+....                       .
T Consensus       238 L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (550)
T KOG0605|consen  238 LTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSD  317 (550)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCcc
Confidence            68999999999999999999999999999999999999999999999999863210                       0


Q ss_pred             cC------------------------ccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC
Q psy9090          58 FD------------------------KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH  113 (488)
Q Consensus        58 ~~------------------------~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~  113 (488)
                      ..                        .....+|||.|+|||++.+     .+|+..||+||||||+||||.|.+||.+.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~-----kgY~~~cDwWSLG~ImyEmLvGyPPF~s~t  392 (550)
T KOG0605|consen  318 FPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLG-----KGYGKECDWWSLGCIMYEMLVGYPPFCSET  392 (550)
T ss_pred             ccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhc-----CCCCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence            00                        0123589999999999997     779999999999999999999999999999


Q ss_pred             hHHHHHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCCCC---CHHHHhcCcCCCCCCCCcccccc
Q psy9090         114 PTRALFQIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPENDLHLST  178 (488)
Q Consensus       114 ~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---s~~ell~hp~f~~~~~~~~~~~~  178 (488)
                      +.+...+++... .-..+.....+++++|||.+||. ||++|.   +++||..||||+.++|+.+....
T Consensus       393 p~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~l~~~~  460 (550)
T KOG0605|consen  393 PQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDHLREMP  460 (550)
T ss_pred             HHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcchhhcCC
Confidence            988887776532 12223345668999999999999 999997   58999999999999999876554

>KOG0599|consensus

Probab=100.00  E-value=6.9e-35  Score=267.19  Aligned_cols=168  Identities=29%  Similarity=0.557  Sum_probs=144.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |||++.+.||+|+++|+.|||.++||||||||+|||++++..+||+|||++....++ .+....||||+|+|||.+.+.-
T Consensus       120 lSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~G-ekLrelCGTPgYLAPEtikC~m  198 (411)
T KOG0599|consen  120 LSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPG-EKLRELCGTPGYLAPETIKCSM  198 (411)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCCc-hhHHHhcCCCcccChhheeeec
Confidence            689999999999999999999999999999999999999999999999999988765 6677889999999999998732


Q ss_pred             -cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 -KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 -~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                       .+-.+|+..+|+|++||++|.|+.|.+||+.....-.+..+..+... ..+...++|...++||.+||+.||.+|.|++
T Consensus       199 ~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritak  278 (411)
T KOG0599|consen  199 YENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAK  278 (411)
T ss_pred             ccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHH
Confidence             23467999999999999999999999999876655545555544321 1123346689999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      ++|.||||.++
T Consensus       279 e~LaHpff~q~  289 (411)
T KOG0599|consen  279 EALAHPFFIQI  289 (411)
T ss_pred             HHhcChHHHHH
Confidence            99999999654

>KOG0593|consensus

Probab=100.00  E-value=1.7e-34  Score=268.27  Aligned_cols=166  Identities=27%  Similarity=0.563  Sum_probs=143.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++++.++.|++|++.|+.|||++++|||||||+|||++.+|.+||||||+|+....+....+..+.|.+|+|||.+.+. 
T Consensus        98 ~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGD-  176 (396)
T KOG0593|consen   98 VPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGD-  176 (396)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhccc-
Confidence            4788999999999999999999999999999999999999999999999999887555666777899999999999874 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-----------------------CCCCCC-----CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-----------------------PPPGLY-----RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-----------------------~~~~~~-----~~  132 (488)
                         .+|+..+||||+||++.||++|.+.|++.+...+++.|...                       +.+...     ..
T Consensus       177 ---tqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~  253 (396)
T KOG0593|consen  177 ---TQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKY  253 (396)
T ss_pred             ---CcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhc
Confidence               68999999999999999999999999999988887776531                       001100     12


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      +..+..+.+|+++||..||.+|++.+++|.||||.++-
T Consensus       254 p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~~  291 (396)
T KOG0593|consen  254 PKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGFI  291 (396)
T ss_pred             ccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHHH
Confidence            34567789999999999999999999999999996543

>KOG0588|consensus

Probab=100.00  E-value=4.9e-34  Score=289.21  Aligned_cols=163  Identities=31%  Similarity=0.536  Sum_probs=145.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++++++||+.|+.|||..+|+||||||+|+|++..+.|||+|||+|..-.++ ....+.||+|+|.|||++.+  
T Consensus       109 l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~g-klLeTSCGSPHYA~PEIV~G--  185 (786)
T KOG0588|consen  109 LPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPG-KLLETSCGSPHYAAPEIVSG--  185 (786)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCC-ccccccCCCcccCCchhhcC--
Confidence            689999999999999999999999999999999999999999999999999765443 66778899999999999998  


Q ss_pred             cCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         .+| +.++||||+|||||.|++|+.||.+.+...++.++.++.   +..|.++|+++++||.+||..||++|+|.++
T Consensus       186 ---~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~---f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~e  259 (786)
T KOG0588|consen  186 ---RPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGV---FEMPSNISSEAQDLLRRMLDVDPSTRITTEE  259 (786)
T ss_pred             ---CCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCc---ccCCCcCCHHHHHHHHHHhccCccccccHHH
Confidence               455 578999999999999999999999888777777776653   3356889999999999999999999999999


Q ss_pred             HhcCcCCCCCCCC
Q psy9090         160 LLEHPFITSLPEN  172 (488)
Q Consensus       160 ll~hp~f~~~~~~  172 (488)
                      |++|||+.....-
T Consensus       260 I~kHP~l~g~~~~  272 (786)
T KOG0588|consen  260 ILKHPFLSGYTSL  272 (786)
T ss_pred             HhhCchhhcCCCC
Confidence            9999999876543

>KOG0583|consensus

Probab=100.00  E-value=1.2e-33  Score=284.63  Aligned_cols=160  Identities=31%  Similarity=0.550  Sum_probs=140.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-CcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |+|.+++.+++||+.||+|||++||+||||||+|||++.+ +.+||+|||++...........+.+|||.|+|||++.+ 
T Consensus       117 l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~-  195 (370)
T KOG0583|consen  117 LKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSG-  195 (370)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCC-
Confidence            5789999999999999999999999999999999999999 99999999999877323356778899999999999987 


Q ss_pred             ccCCCC-CC-CccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCc-CHHHHHHHHHhcccCCCCCCC
Q psy9090          80 HKEVDG-YD-NRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        80 ~~~~~~-~~-~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~li~~~L~~dP~~Rps  156 (488)
                          .. |+ .++||||+||+||.|++|+.||.+.+.......+.....   ..|..+ |+++++|+.+||..||.+|+|
T Consensus       196 ----~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~---~~p~~~~S~~~~~Li~~mL~~~P~~R~t  268 (370)
T KOG0583|consen  196 ----KGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEF---KIPSYLLSPEARSLIEKMLVPDPSTRIT  268 (370)
T ss_pred             ----CCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCc---cCCCCcCCHHHHHHHHHHcCCCcccCCC
Confidence                33 65 689999999999999999999999877766666555422   234455 999999999999999999999


Q ss_pred             HHHHhcCcCCCC
Q psy9090         157 MSELLEHPFITS  168 (488)
Q Consensus       157 ~~ell~hp~f~~  168 (488)
                      +.++++||||+.
T Consensus       269 ~~~i~~h~w~~~  280 (370)
T KOG0583|consen  269 LLEILEHPWFQK  280 (370)
T ss_pred             HHHHhhChhhcc
Confidence            999999999986

>KOG0690|consensus

Probab=100.00  E-value=5.8e-34  Score=266.72  Aligned_cols=179  Identities=30%  Similarity=0.518  Sum_probs=161.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++|..++++-.+|+.||.|||+++||+||||.+|.|++++|+|||+|||+++.-.......+++||||.|+|||++..  
T Consensus       265 FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleD--  342 (516)
T KOG0690|consen  265 FSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLED--  342 (516)
T ss_pred             ccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhcc--
Confidence            578899999999999999999999999999999999999999999999999987666677889999999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..|+.++|+|.+||++|||+||+.||...+......-|+..   .+..|..++++++.|+..+|.+||.+|.     
T Consensus       343 ---nDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~e---d~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpd  416 (516)
T KOG0690|consen  343 ---NDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILME---DLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPD  416 (516)
T ss_pred             ---ccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhh---hccCCccCCHHHHHHHHHHhhcChHhhcCCCch
Confidence               67999999999999999999999999988766655544433   3345778999999999999999999997     


Q ss_pred             CHHHHhcCcCCCCCCCCcccccccccccccch
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKDQE  187 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~~~  187 (488)
                      .+.++.+|+||.+++|+....+.+.++|+++.
T Consensus       417 DakEi~~h~FF~~v~W~~~~~Kki~PPfKPqV  448 (516)
T KOG0690|consen  417 DAKEIMRHRFFASVDWEATYRKKIEPPFKPQV  448 (516)
T ss_pred             hHHHHHhhhhhccCCHHHHHHhccCCCCCCCc
Confidence            47899999999999999999999999998864

>KOG0579|consensus

Probab=100.00  E-value=2.3e-33  Score=281.55  Aligned_cols=172  Identities=40%  Similarity=0.882  Sum_probs=162.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+|..+++|++.||.|||+++|||||||..|||++-+|.|+|+|||.+...........+++|||+|||||+..+..
T Consensus       127 LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET  206 (1187)
T KOG0579|consen  127 LTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCET  206 (1187)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeecc
Confidence            68999999999999999999999999999999999999999999999999987766666778999999999999998876


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      -...+|+.++||||||+.|.+|.-+.+|-...++...+.++-+..+|.+..|..|+..+.|++++||.+||..||++.++
T Consensus       207 ~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaql  286 (1187)
T KOG0579|consen  207 FKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQL  286 (1187)
T ss_pred             ccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHH
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcCCCCCCCC
Q psy9090         161 LEHPFITSLPEN  172 (488)
Q Consensus       161 l~hp~f~~~~~~  172 (488)
                      ++||||.+++.+
T Consensus       287 l~Hpfv~~~~Sn  298 (1187)
T KOG0579|consen  287 LKHPFVQNAPSN  298 (1187)
T ss_pred             hhCcccccCCcc
Confidence            999999988765

>KOG0661|consensus

Probab=100.00  E-value=3.3e-33  Score=273.88  Aligned_cols=165  Identities=29%  Similarity=0.525  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|..|+.|+.||++||+|+|++|+.|||+||+|||+..+..|||+|||+|+..... ...+..+.|.+|+|||++..  
T Consensus       107 fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk-pPYTeYVSTRWYRAPEvLLr--  183 (538)
T KOG0661|consen  107 FSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSK-PPYTEYVSTRWYRAPEVLLR--  183 (538)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccC-CCcchhhhcccccchHHhhh--
Confidence            689999999999999999999999999999999999999999999999999988765 55667789999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC------------------CCCC------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP------------------PGLY------RAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~------------------~~~~------~~~  133 (488)
                        ...|+.++|+|++|||++|+.+-++.|.+.+..+++.++..-   +.                  |...      ..+
T Consensus       184 --s~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p  261 (538)
T KOG0661|consen  184 --SGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLP  261 (538)
T ss_pred             --ccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCc
Confidence              267999999999999999999999999999998888887631   10                  0000      123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      +++.++.+||.+||..||.+|||+.++|+||||..-.
T Consensus       262 ~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~  298 (538)
T KOG0661|consen  262 NASSEAASLIERLLAWDPDKRPTASQALQHPFFQVGR  298 (538)
T ss_pred             ccCHHHHHHHHHHhcCCCccCccHHHHhcCccccccc
Confidence            4789999999999999999999999999999997543

>KOG0198|consensus

Probab=100.00  E-value=2.1e-33  Score=272.83  Aligned_cols=166  Identities=33%  Similarity=0.680  Sum_probs=139.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCcccccc---ccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETAN---TFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~---~~~~~~~~~gt~~y~aPE~l   76 (488)
                      |+|..++.+.+||++||.|||++|||||||||+|||++. ++.+||+|||+++....   .........|||.|||||++
T Consensus       114 l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi  193 (313)
T KOG0198|consen  114 LPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVI  193 (313)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhh
Confidence            689999999999999999999999999999999999999 79999999999887653   11234467899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCC-CChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED-MHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..+    ....+++|||||||++.||+||++||.. ......+..+......+ ..|..+|+++++||.+|+..+|++||
T Consensus       194 ~~g----~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P-~ip~~ls~~a~~Fl~~C~~~~p~~Rp  268 (313)
T KOG0198|consen  194 RNG----EVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLP-EIPDSLSDEAKDFLRKCFKRDPEKRP  268 (313)
T ss_pred             cCC----CcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCC-CCCcccCHHHHHHHHHHhhcCcccCc
Confidence            841    1223589999999999999999999987 45555566665544222 45677899999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPE  171 (488)
Q Consensus       156 s~~ell~hp~f~~~~~  171 (488)
                      |++++|+|||.+....
T Consensus       269 ta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  269 TAEELLEHPFLKQNSI  284 (313)
T ss_pred             CHHHHhhChhhhcccc
Confidence            9999999999986443

>KOG0582|consensus

Probab=100.00  E-value=3.3e-33  Score=271.93  Aligned_cols=170  Identities=39%  Similarity=0.798  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc----ccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK----KTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~----~~~~gt~~y~aPE~l   76 (488)
                      |+|..|+.|+++++.||.|||++|-||||||+.||||+.+|.|||+|||.+........+.    .+++|||+|||||++
T Consensus       123 l~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl  202 (516)
T KOG0582|consen  123 LEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVL  202 (516)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHh
Confidence            6799999999999999999999999999999999999999999999999876554332222    567999999999996


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC-------CCCCCcCHHHHHHHHHhccc
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL-------YRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~li~~~L~~  149 (488)
                      ..   ...+|+.|+||||||++..||.+|..||....+.+.+...+.+.+|..       .....++..++.+|..||.+
T Consensus       203 ~q---~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~k  279 (516)
T KOG0582|consen  203 MQ---QLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVK  279 (516)
T ss_pred             hh---cccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhc
Confidence            54   236899999999999999999999999999999998888888776622       12345678899999999999


Q ss_pred             CCCCCCCHHHHhcCcCCCCCCCCc
Q psy9090         150 NPEHRPYMSELLEHPFITSLPEND  173 (488)
Q Consensus       150 dP~~Rps~~ell~hp~f~~~~~~~  173 (488)
                      ||.+|||++++|+|+||+......
T Consensus       280 DP~kRptAskLlkh~FFk~~k~~~  303 (516)
T KOG0582|consen  280 DPSKRPTASKLLKHAFFKKAKSKE  303 (516)
T ss_pred             CcccCCCHHHHhccHHHhhccchh
Confidence            999999999999999999865443

>KOG0659|consensus

Probab=100.00  E-value=1.7e-32  Score=251.07  Aligned_cols=168  Identities=29%  Similarity=0.481  Sum_probs=144.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+..+++.|+.++++||+|||++.|+||||||.|+|++.+|.+||+|||+++.+..........+-|.+|+|||.+.+. 
T Consensus        98 l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGs-  176 (318)
T KOG0659|consen   98 LSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGS-  176 (318)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccc-
Confidence            5678999999999999999999999999999999999999999999999999887765555555789999999999874 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCCC----------------------CCCCc
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGLY----------------------RASNW  135 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~~----------------------~~~~~  135 (488)
                         ..|+..+||||+||++.||+.|.+-|.+.+..+++..+.+.   +.+..+                      ..+..
T Consensus       177 ---r~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aa  253 (318)
T KOG0659|consen  177 ---RQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAA  253 (318)
T ss_pred             ---hhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccc
Confidence               67999999999999999999999999999888887777641   111111                      11234


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         136 SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       136 s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      +.++.+|+.+||..||.+|+|+.|+|+|+||++.|..
T Consensus       254 s~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~p  290 (318)
T KOG0659|consen  254 SSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLP  290 (318)
T ss_pred             cHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCC
Confidence            6778999999999999999999999999999986543

>KOG0604|consensus

Probab=99.98  E-value=7.3e-33  Score=257.02  Aligned_cols=164  Identities=29%  Similarity=0.486  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC---CcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~---~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      ++|.++..|++||..|+.|||+.+|.||||||+|+|...+   ..+||+|||+++..... ....+.+.||.|.|||++.
T Consensus       158 fTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~-~~L~TPc~TPyYvaPevlg  236 (400)
T KOG0604|consen  158 FTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEP-GDLMTPCFTPYYVAPEVLG  236 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCC-ccccCCcccccccCHHHhC
Confidence            5799999999999999999999999999999999999754   45999999999987653 4556778999999999996


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH---HHHHHhCCCCCCC--CCCCcCHHHHHHHHHhcccCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA---LFQIVRNPPPGLY--RASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~---~~~~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      .     ..|+..+|+||+||++|.|+||.+||........   +...++.....++  .....|+.++++|+++|..+|.
T Consensus       237 ~-----eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~Pt  311 (400)
T KOG0604|consen  237 P-----EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPT  311 (400)
T ss_pred             c-----hhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCch
Confidence            5     6799999999999999999999999977654221   2222222222222  2234589999999999999999


Q ss_pred             CCCCHHHHhcCcCCCCCC
Q psy9090         153 HRPYMSELLEHPFITSLP  170 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~~~  170 (488)
                      +|.|+.++++|||+.+..
T Consensus       312 eRlTI~~~m~hpwi~~~~  329 (400)
T KOG0604|consen  312 ERLTIEEVMDHPWINQYE  329 (400)
T ss_pred             hheeHHHhhcCchhcccc
Confidence            999999999999998754

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.98  E-value=2.6e-32  Score=272.98  Aligned_cols=172  Identities=31%  Similarity=0.540  Sum_probs=145.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus        92 ~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  169 (323)
T cd05571          92 FSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED--  169 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcC--
Confidence            578899999999999999999999999999999999999999999999998754333233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++||||+||++|+|++|..||...........+....   ...+..+++++.+||.+||..||++||     
T Consensus       170 ---~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  243 (323)
T cd05571         170 ---NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE---IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPE  243 (323)
T ss_pred             ---CCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHccCCHHHcCCCCCC
Confidence               568899999999999999999999998877655555554432   223567899999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCcccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVN  180 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~  180 (488)
                      ++.++++||||.+++|.........
T Consensus       244 ~~~~ll~h~~f~~~~~~~~~~~~~~  268 (323)
T cd05571         244 DAKEIMEHRFFASINWQDVVQKKLE  268 (323)
T ss_pred             CHHHHHcCCCcCCCCHHHHHhCCCC
Confidence            8999999999999988765444333

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0594|consensus

Probab=99.98  E-value=5.1e-32  Score=259.13  Aligned_cols=167  Identities=27%  Similarity=0.554  Sum_probs=140.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      +...++.+++||+.||+|||+++|+||||||.||||+++|.+||+|||+++...-+......-++|.+|+|||++.+.  
T Consensus       118 ~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs--  195 (323)
T KOG0594|consen  118 PPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGS--  195 (323)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCC--
Confidence            457899999999999999999999999999999999999999999999998766444445667899999999999873  


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC----CCCC------------C-CC-------C
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP----PGLY------------R-AS-------N  134 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~----~~~~------------~-~~-------~  134 (488)
                        ..|+..+||||+|||++||+++++.|.+.....++.++.+-   +.    |...            . +.       .
T Consensus       196 --~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~  273 (323)
T KOG0594|consen  196 --TSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPK  273 (323)
T ss_pred             --CcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccc
Confidence              56999999999999999999999999999888877777641   11    1000            0 11       1


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .++...+++.+||+.+|.+|.|++.+|.||||...+..
T Consensus       274 ~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~  311 (323)
T KOG0594|consen  274 LDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPEK  311 (323)
T ss_pred             cCccHHHHHHHHhccCcccCcCHHHHhcChhhcccccc
Confidence            23578999999999999999999999999999987543

>KOG0663|consensus

Probab=99.98  E-value=4e-32  Score=255.68  Aligned_cols=166  Identities=27%  Similarity=0.475  Sum_probs=144.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.|++.||+|||++.|+||||||+|+|++..|.+|++|||+|+....+....+..+-|.+|+|||.+.+. 
T Consensus       174 F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~-  252 (419)
T KOG0663|consen  174 FLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGA-  252 (419)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCC-
Confidence            5688999999999999999999999999999999999999999999999999998877777788899999999999984 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-------CCCCCCCC---------------------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-------PPPGLYRA---------------------  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-------~~~~~~~~---------------------  132 (488)
                         ..|+.++|+||+|||+.||+++++.|.+.....++.+|.+-       .+|.+...                     
T Consensus       253 ---~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~  329 (419)
T KOG0663|consen  253 ---KTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFG  329 (419)
T ss_pred             ---cccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhcc
Confidence               67999999999999999999999999999888887777641       11111100                     


Q ss_pred             -CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         133 -SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       133 -~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                       ..+++...+|+..+|.+||.+|.|+++.|+|.||...|
T Consensus       330 ~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P  368 (419)
T KOG0663|consen  330 ALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETP  368 (419)
T ss_pred             ccccchhHHHHHHHHhccCccccccHHHhhcccccccCC
Confidence             11357789999999999999999999999999999854

>KOG0660|consensus

Probab=99.97  E-value=3.1e-32  Score=259.97  Aligned_cols=167  Identities=29%  Similarity=0.512  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++..++.+++||+.||+|+|+.||+||||||.|+|++.+..+|+||||+|+.....  ....+..+.|.+|+|||++..
T Consensus       122 L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~  201 (359)
T KOG0660|consen  122 LTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLN  201 (359)
T ss_pred             ccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhc
Confidence            578899999999999999999999999999999999999999999999999877532  122345678999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC----------------------CCCCC------
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP----------------------PPGLY------  130 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~----------------------~~~~~------  130 (488)
                      .    ..|+.++||||+|||+.||++|++.|.+.+...++..+..-.                      .+..+      
T Consensus       202 ~----~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~  277 (359)
T KOG0660|consen  202 S----SEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSS  277 (359)
T ss_pred             c----ccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHH
Confidence            3    679999999999999999999999999887766655554210                      01110      


Q ss_pred             CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       131 ~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ..++.++.+.+|+.+||..||.+|+|++++|+|||+..+..
T Consensus       278 ~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hd  318 (359)
T KOG0660|consen  278 IFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHD  318 (359)
T ss_pred             HcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcC
Confidence            12356899999999999999999999999999999987643

>KOG0696|consensus

Probab=99.97  E-value=3.7e-32  Score=261.52  Aligned_cols=179  Identities=30%  Similarity=0.532  Sum_probs=159.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +.|..+.+|+.+|+-||-+||++||++||||.+||+++.+|+|||+|||+++...-......+++|||.|+|||++..  
T Consensus       447 FKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~Y--  524 (683)
T KOG0696|consen  447 FKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAY--  524 (683)
T ss_pred             cCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEe--
Confidence            457889999999999999999999999999999999999999999999999876555566788999999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ++|+.++|+||+||+||||+.|++||.+.+..+....|....   ...|..+|.++.++.+.+|.+.|.+|...   
T Consensus       525 ---qPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehn---vsyPKslSkEAv~ickg~ltK~P~kRLGcg~~  598 (683)
T KOG0696|consen  525 ---QPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHN---VSYPKSLSKEAVAICKGLLTKHPGKRLGCGPE  598 (683)
T ss_pred             ---cccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHcc---CcCcccccHHHHHHHHHHhhcCCccccCCCCc
Confidence               889999999999999999999999999999877776666542   23467889999999999999999999754   


Q ss_pred             --HHHhcCcCCCCCCCCcccccccccccccch
Q psy9090         158 --SELLEHPFITSLPENDLHLSTVNCQYKDQE  187 (488)
Q Consensus       158 --~ell~hp~f~~~~~~~~~~~~~~~~~~~~~  187 (488)
                        .++-.||||+.++|+.+...++.+++++..
T Consensus       599 ge~di~~H~FFR~iDWek~E~~eiqPPfkPk~  630 (683)
T KOG0696|consen  599 GERDIREHPFFRRIDWEKLERREIQPPFKPKI  630 (683)
T ss_pred             cccchhhCcchhhccHHHHhhccCCCCCCCcc
Confidence              689999999999999999999888887754

>KOG0201|consensus

Probab=99.97  E-value=4.7e-33  Score=270.73  Aligned_cols=162  Identities=46%  Similarity=0.956  Sum_probs=148.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.++..++++++.||.|||..+.+|||||+.|||+..+|.+||+|||.+...........+++|||.|||||++.+  
T Consensus       108 ~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~--  185 (467)
T KOG0201|consen  108 LDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQ--  185 (467)
T ss_pred             CccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhcc--
Confidence            367888999999999999999999999999999999999999999999999888776666789999999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++||||||++.+||++|.+|+.+.++...++-|-+..+|.+.  ..||+.+++||..||++||+.|||+.++
T Consensus       186 ---~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~--~~~S~~~kEFV~~CL~k~P~~RpsA~~L  260 (467)
T KOG0201|consen  186 ---SGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLD--GDFSPPFKEFVEACLDKNPEFRPSAKEL  260 (467)
T ss_pred             ---ccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccc--cccCHHHHHHHHHHhhcCcccCcCHHHH
Confidence               78999999999999999999999999999987777777666666553  3899999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      |.|+|++..
T Consensus       261 LKh~FIk~a  269 (467)
T KOG0201|consen  261 LKHKFIKRA  269 (467)
T ss_pred             hhhHHHHhc
Confidence            999999873

>KOG0591|consensus

Probab=99.97  E-value=3.6e-32  Score=250.55  Aligned_cols=151  Identities=27%  Similarity=0.502  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH--CC--CeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE--NH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~--~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      ++|..+|.++.|++.||..||.  ..  |+||||||.||+++.+|.|||+|||+++.+.....-..+.+|||.||+||.+
T Consensus       121 ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i  200 (375)
T KOG0591|consen  121 IPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERI  200 (375)
T ss_pred             CchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHH
Confidence            5899999999999999999999  44  9999999999999999999999999999887766666788999999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      ..     .+|+.++||||+||++|||+.-++||.+.+-...-.+|.....++.+ ...+|.++..+|..|+..||..||+
T Consensus       201 ~~-----~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p-~~~YS~~l~~li~~ci~vd~~~RP~  274 (375)
T KOG0591|consen  201 HE-----SGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLP-DEHYSTDLRELINMCIAVDPEQRPD  274 (375)
T ss_pred             hc-----CCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCc-HHHhhhHHHHHHHHHccCCcccCCC
Confidence            87     78999999999999999999999999999766666666655444332 2567999999999999999999998


Q ss_pred             H
Q psy9090         157 M  157 (488)
Q Consensus       157 ~  157 (488)
                      .
T Consensus       275 t  275 (375)
T KOG0591|consen  275 T  275 (375)
T ss_pred             c
Confidence            5

>KOG0600|consensus

Probab=99.97  E-value=8.8e-32  Score=265.66  Aligned_cols=165  Identities=25%  Similarity=0.502  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++.+|++||+||+.||+|||++||+|||||.+||||+.+|.+||+|||+|+....... ..+..+-|.+|+|||++.+.
T Consensus       215 ft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~  294 (560)
T KOG0600|consen  215 FTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGA  294 (560)
T ss_pred             cChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCC
Confidence            68999999999999999999999999999999999999999999999999996654322 35667889999999999984


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCCC-----------------------CC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLYR-----------------------AS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~~-----------------------~~  133 (488)
                          ..|+.++|+||+||||.||++|++.|.+.+..+++..|.+   .+....+.                       ..
T Consensus       295 ----t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~  370 (560)
T KOG0600|consen  295 ----TSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFK  370 (560)
T ss_pred             ----cccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhc
Confidence                6799999999999999999999999999998888777764   11111111                       12


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      .+++...+|+..||..||.+|.|+.++|+|+||+..
T Consensus       371 ~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t~  406 (560)
T KOG0600|consen  371 DFPASALDLLEKLLSLDPDKRGTASSALQSEYFTTE  406 (560)
T ss_pred             cCCHHHHHHHHHHhccCccccccHHHHhcCcccccC
Confidence            357788999999999999999999999999999543

>KOG0610|consensus

Probab=99.97  E-value=1.4e-31  Score=258.70  Aligned_cols=167  Identities=28%  Similarity=0.488  Sum_probs=145.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccc------------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN------------------------   56 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~------------------------   56 (488)
                      |+|+.+++|+.+|+.||+|||-.|||+|||||+||||.++|+|.|+||.++.....                        
T Consensus       176 fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~  255 (459)
T KOG0610|consen  176 FSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQP  255 (459)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccc
Confidence            68999999999999999999999999999999999999999999999988642100                        


Q ss_pred             -----------c---------------------cCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhc
Q psy9090          57 -----------T---------------------FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD  104 (488)
Q Consensus        57 -----------~---------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~ellt  104 (488)
                                 .                     ..+...++||-.|+|||++++     .+.+.++|||+|||++|||+.
T Consensus       256 s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G-----~GHgsAVDWWtfGIflYEmLy  330 (459)
T KOG0610|consen  256 SCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRG-----EGHGSAVDWWTFGIFLYEMLY  330 (459)
T ss_pred             cccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeec-----CCCCchhhHHHHHHHHHHHHh
Confidence                       0                     011234689999999999998     678899999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----HHHHhcCcCCCCCCCCc
Q psy9090         105 GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----MSELLEHPFITSLPEND  173 (488)
Q Consensus       105 g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----~~ell~hp~f~~~~~~~  173 (488)
                      |..||.+.+..+.+.+++.++. .++.....+..++|||+++|.+||.+|..    +.+|.+||||+.+.|.-
T Consensus       331 G~TPFKG~~~~~Tl~NIv~~~l-~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWaL  402 (459)
T KOG0610|consen  331 GTTPFKGSNNKETLRNIVGQPL-KFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWAL  402 (459)
T ss_pred             CCCCcCCCCchhhHHHHhcCCC-cCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCChhh
Confidence            9999999999888888887653 33334467899999999999999999997    99999999999999983

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=1.3e-31  Score=267.49  Aligned_cols=175  Identities=31%  Similarity=0.523  Sum_probs=146.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        93 l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (320)
T cd05590          93 FDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQE--  170 (320)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcC--
Confidence            578899999999999999999999999999999999999999999999998754332233445679999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+|||||++|+|++|+.||...+.......+.....   ..+..++.+++++|.+||..||.+||++   
T Consensus       171 ---~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~  244 (320)
T cd05590         171 ---MLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEV---VYPTWLSQDAVDILKAFMTKNPTMRLGSLTL  244 (320)
T ss_pred             ---CCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---CCCCCCCHHHHHHHHHHcccCHHHCCCCCCC
Confidence               5688899999999999999999999998887666666554322   2345679999999999999999999998   


Q ss_pred             ---HHHhcCcCCCCCCCCccccccccccc
Q psy9090         158 ---SELLEHPFITSLPENDLHLSTVNCQY  183 (488)
Q Consensus       158 ---~ell~hp~f~~~~~~~~~~~~~~~~~  183 (488)
                         +++++||||..+.|..+......+++
T Consensus       245 ~~~~~~~~h~~f~~~~~~~~~~~~~~~~~  273 (320)
T cd05590         245 GGEEAILRHPFFKELDWEKLNRRQIEPPF  273 (320)
T ss_pred             CCHHHHHcCCCcCCCCHHHHHhCCCCCCc
Confidence               99999999999888765444433333

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0597|consensus

Probab=99.97  E-value=4.9e-32  Score=269.78  Aligned_cols=160  Identities=33%  Similarity=0.641  Sum_probs=145.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|+.++.+..|++.||.|||+++|+|||+||.|||++..|.+|+||||+++-..........+.|||.|||||++.+  
T Consensus        97 lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e--  174 (808)
T KOG0597|consen   97 LPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEE--  174 (808)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcC--
Confidence            689999999999999999999999999999999999999999999999999987665556677889999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         .+|+..+|+|||||++||+.+|++||...........|...+..   .|...|..+.+|++.+|.+||.+|.|+.++
T Consensus       175 ---~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~---~p~~~S~~f~nfl~gLL~kdP~~RltW~~L  248 (808)
T KOG0597|consen  175 ---QPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVK---PPSTASSSFVNFLQGLLIKDPAQRLTWTDL  248 (808)
T ss_pred             ---CCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCC---CcccccHHHHHHHHHHhhcChhhcccHHHH
Confidence               78999999999999999999999999987777777777765443   355889999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      +.|||+++
T Consensus       249 l~HpF~k~  256 (808)
T KOG0597|consen  249 LGHPFWKG  256 (808)
T ss_pred             hcChHHhh
Confidence            99999875

>KOG0986|consensus

Probab=99.97  E-value=7.3e-32  Score=262.58  Aligned_cols=178  Identities=28%  Similarity=0.459  Sum_probs=151.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|+.+.+|+.+|+.||.+||+.+||+|||||+|||+|+.|+|+|+|+|+|..+... ......+||.+|||||++..  
T Consensus       284 F~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g-~~~~~rvGT~GYMAPEvl~n--  360 (591)
T KOG0986|consen  284 FDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEG-KPIRGRVGTVGYMAPEVLQN--  360 (591)
T ss_pred             CchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCC-CccccccCcccccCHHHHcC--
Confidence            689999999999999999999999999999999999999999999999999987654 44556699999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC--
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP--  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp--  155 (488)
                         ..|+.+.|+|||||++|+|+.|+.||......   +.+.+.+......  .+..+|++++++.+.+|.+||++|.  
T Consensus       361 ---e~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~e--y~~kFS~eakslc~~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  361 ---EVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEE--YSDKFSEEAKSLCEGLLTKDPEKRLGC  435 (591)
T ss_pred             ---CcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhh--cccccCHHHHHHHHHHHccCHHHhccC
Confidence               56999999999999999999999999654322   2333333332222  3478899999999999999999998  


Q ss_pred             ---CHHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         156 ---YMSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       156 ---s~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                         +++++.+||||++++|..+......+++.|.
T Consensus       436 rg~ga~evk~HpfFk~lnw~rleagml~PPfiPd  469 (591)
T KOG0986|consen  436 RGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPD  469 (591)
T ss_pred             CCcCcchhhhCcccccCCHhHHhccCCCCCCCCC
Confidence               4679999999999999998888777777553

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.97  E-value=1.5e-31  Score=262.61  Aligned_cols=177  Identities=23%  Similarity=0.404  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.++|+|||++...... .......||+.|+|||++.+  
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~g~~~y~aPE~~~~--  175 (285)
T cd05631          99 FDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG-ETVRGRVGTVGYMAPEVINN--  175 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCC-CeecCCCCCCCccCHhhhcC--
Confidence            468889999999999999999999999999999999999999999999998765332 22344578999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH---HHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA---LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-  156 (488)
                         ..++.++||||+||++|+|++|+.||........   ....+...  ....+..++..+.+||++||..||.+||+ 
T Consensus       176 ---~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05631         176 ---EKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKED--QEEYSEKFSEDAKSICRMLLTKNPKERLGC  250 (285)
T ss_pred             ---CCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcc--cccCCccCCHHHHHHHHHHhhcCHHHhcCC
Confidence               5688999999999999999999999986543222   22222221  12234568999999999999999999997 


Q ss_pred             ----HHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         157 ----MSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       157 ----~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                          ++++++||||..++++.+......+++.+
T Consensus       251 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~  283 (285)
T cd05631         251 RGNGAAGVKQHPIFKNINFKRLEANMLEPPFCP  283 (285)
T ss_pred             CCCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCC
Confidence                89999999999999887765555555443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.4e-31  Score=264.63  Aligned_cols=166  Identities=30%  Similarity=0.559  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        90 ~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  167 (312)
T cd05585          90 FDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLG--  167 (312)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcC--
Confidence            578899999999999999999999999999999999999999999999998754333233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC---CH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP---YM  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---s~  157 (488)
                         ..++.++||||+||++|+|++|..||.+.........+.....   ..+..+++.+++||.+||..||.+||   ++
T Consensus       168 ---~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~  241 (312)
T cd05585         168 ---HGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPL---RFPDGFDRDAKDLLIGLLSRDPTRRLGYNGA  241 (312)
T ss_pred             ---CCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCC---CCCCcCCHHHHHHHHHHcCCCHHHcCCCCCH
Confidence               5688999999999999999999999988776666555554322   23567899999999999999999997   57


Q ss_pred             HHHhcCcCCCCCCCCcc
Q psy9090         158 SELLEHPFITSLPENDL  174 (488)
Q Consensus       158 ~ell~hp~f~~~~~~~~  174 (488)
                      .+++.||||....+...
T Consensus       242 ~e~l~hp~~~~~~~~~~  258 (312)
T cd05585         242 QEIKNHPFFSQLSWKKL  258 (312)
T ss_pred             HHHHcCCCcCCCCHHHH
Confidence            99999999998765543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.97  E-value=2.1e-31  Score=265.57  Aligned_cols=170  Identities=32%  Similarity=0.588  Sum_probs=142.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (316)
T cd05592          93 FDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKG--  170 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcC--
Confidence            578899999999999999999999999999999999999999999999998764333233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH-HH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM-SE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~-~e  159 (488)
                         ..++.++|+|||||++|+|++|..||.+.........+... .+.  .+..++.++.+||.+||..+|.+||++ .+
T Consensus       171 ---~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~-~~~--~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~  244 (316)
T cd05592         171 ---QKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILND-RPH--FPRWISKEAKDCLSKLFERDPTKRLGVDGD  244 (316)
T ss_pred             ---CCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcC-CCC--CCCCCCHHHHHHHHHHccCCHHHcCCChHH
Confidence               56889999999999999999999999988766555554432 222  345678999999999999999999986 58


Q ss_pred             HhcCcCCCCCCCCcccccc
Q psy9090         160 LLEHPFITSLPENDLHLST  178 (488)
Q Consensus       160 ll~hp~f~~~~~~~~~~~~  178 (488)
                      +++||||..+.|..+....
T Consensus       245 l~~h~~~~~~~~~~~~~~~  263 (316)
T cd05592         245 IRQHPFFRGIDWERLEKRE  263 (316)
T ss_pred             HHcCcccCCCCHHHHHhCC
Confidence            8999999998876544333

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0658|consensus

Probab=99.97  E-value=1.3e-31  Score=256.14  Aligned_cols=169  Identities=27%  Similarity=0.509  Sum_probs=142.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-CcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |+.-+++-++.||+.||+|||+.||+||||||.|+|+|.+ |.+||||||.|+..... ....+...|..|+|||.+.+.
T Consensus       122 mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~-epniSYicSRyYRaPELifga  200 (364)
T KOG0658|consen  122 MPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKG-EPNISYICSRYYRAPELIFGA  200 (364)
T ss_pred             CceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccC-CCceeEEEeccccCHHHHcCc
Confidence            3455788999999999999999999999999999999975 89999999999988765 445667789999999999874


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-------------CC------CCCC-------CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-------------PP------PGLY-------RAS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-------------~~------~~~~-------~~~  133 (488)
                          ..|+.+.||||.||++.||+-|++.|.+.+...++..+++-             +.      |...       ...
T Consensus       201 ----~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~  276 (364)
T KOG0658|consen  201 ----TEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFK  276 (364)
T ss_pred             ----cccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeeccc
Confidence                77999999999999999999999999998887777666531             00      1110       123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCcc
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~  174 (488)
                      ..++++.+|+.++|.++|.+|.++.+++.||||..+.....
T Consensus       277 ~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~~~  317 (364)
T KOG0658|consen  277 RLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDPNT  317 (364)
T ss_pred             CCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCcCc
Confidence            45789999999999999999999999999999988765543

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=2.4e-31  Score=265.72  Aligned_cols=169  Identities=30%  Similarity=0.505  Sum_probs=144.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (321)
T cd05591          93 FDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQE--  170 (321)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcC--
Confidence            468889999999999999999999999999999999999999999999998754333233445679999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|||||||++|+|++|+.||...........+.....   ..+..+++++.++|.+||..+|++||     
T Consensus       171 ---~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~  244 (321)
T cd05591         171 ---LEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDV---LYPVWLSKEAVSILKAFMTKNPNKRLGCVAS  244 (321)
T ss_pred             ---CCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHhccCHHHcCCCCCC
Confidence               5688999999999999999999999998887766666655432   23445789999999999999999999     


Q ss_pred             --CHHHHhcCcCCCCCCCCccccc
Q psy9090         156 --YMSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       156 --s~~ell~hp~f~~~~~~~~~~~  177 (488)
                        +++++++||||..++|..+...
T Consensus       245 ~~~~~~~~~hp~~~~~~~~~~~~~  268 (321)
T cd05591         245 QGGEDAIKQHPFFKEIDWVLLEQR  268 (321)
T ss_pred             CCCHHHHhcCCccCCCCHHHHHhC
Confidence              8999999999999888765433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=2.3e-31  Score=266.74  Aligned_cols=169  Identities=30%  Similarity=0.530  Sum_probs=142.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        92 l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  169 (328)
T cd05593          92 FSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLED--  169 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcC--
Confidence            578899999999999999999999999999999999999999999999998754332233345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|||||||++|+|++|..||...........+....   ...+..+++++.+||.+||..||.+|+     
T Consensus       170 ---~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  243 (328)
T cd05593         170 ---NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMED---IKFPRTLSADAKSLLSGLLIKDPNKRLGGGPD  243 (328)
T ss_pred             ---CCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCC---ccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCC
Confidence               568899999999999999999999998877655544444322   223567899999999999999999997     


Q ss_pred             CHHHHhcCcCCCCCCCCccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~  177 (488)
                      ++.++++||||....|......
T Consensus       244 ~~~~il~h~~~~~~~~~~~~~~  265 (328)
T cd05593         244 DAKEIMRHSFFTGVNWQDVYDK  265 (328)
T ss_pred             CHHHHhcCCCcCCCCHHHHHhC
Confidence            8999999999999887655433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=2.5e-31  Score=265.86  Aligned_cols=171  Identities=30%  Similarity=0.550  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.............+||+.|+|||++.+  
T Consensus        98 ~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  175 (324)
T cd05587          98 FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAY--  175 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcC--
Confidence            478899999999999999999999999999999999999999999999998754322233345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+||+||++|+|++|+.||.+.........+.....   ..+..+++.+.+++.+||..||.+|++.   
T Consensus       176 ---~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~  249 (324)
T cd05587         176 ---QPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNV---SYPKSLSKEAVSICKGLLTKHPAKRLGCGPT  249 (324)
T ss_pred             ---CCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCC
Confidence               5688999999999999999999999988877666655554322   2345679999999999999999999976   


Q ss_pred             --HHHhcCcCCCCCCCCccccccc
Q psy9090         158 --SELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       158 --~ell~hp~f~~~~~~~~~~~~~  179 (488)
                        +++++||||+.++|..+.....
T Consensus       250 ~~~~~~~hp~~~~~~~~~~~~~~~  273 (324)
T cd05587         250 GERDIREHAFFRRIDWEKLERREI  273 (324)
T ss_pred             CHHHHhcCCCcCCCCHHHHHhCCC
Confidence              8999999999998875544333

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0585|consensus

Probab=99.97  E-value=2.1e-31  Score=260.94  Aligned_cols=167  Identities=34%  Similarity=0.563  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-----cCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-----FDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-----~~~~~~~~gt~~y~aPE~   75 (488)
                      |++.+++.|++.++.||.|||.+|||||||||+|+|++.+|+|||+|||.+......     .......+|||.|+|||.
T Consensus       207 ls~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~  286 (576)
T KOG0585|consen  207 LSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPEL  286 (576)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHh
Confidence            578999999999999999999999999999999999999999999999998765221     122334689999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +.++.. ....+.+.||||+||+||.|+.|+.||.+....+...+|+..+. .++..+.+.+.+++||.+||.+||++|+
T Consensus       287 c~~~~~-~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL-~fP~~pe~~e~~kDli~~lL~KdP~~Ri  364 (576)
T KOG0585|consen  287 CSGGNS-FSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPL-EFPENPEINEDLKDLIKRLLEKDPEQRI  364 (576)
T ss_pred             hcCCCC-ccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcc-cCCCcccccHHHHHHHHHHhhcChhhee
Confidence            976432 12345789999999999999999999999887777777776543 3334456789999999999999999999


Q ss_pred             CHHHHhcCcCCCCC
Q psy9090         156 YMSELLEHPFITSL  169 (488)
Q Consensus       156 s~~ell~hp~f~~~  169 (488)
                      ++.++..|||...-
T Consensus       365 ~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  365 TLPDIKLHPWVTRD  378 (576)
T ss_pred             ehhhheecceeccC
Confidence            99999999999864

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.97  E-value=2.7e-31  Score=264.83  Aligned_cols=169  Identities=28%  Similarity=0.523  Sum_probs=140.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.++|+|||+++.............||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (316)
T cd05620          93 FDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQG--  170 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcC--
Confidence            467889999999999999999999999999999999999999999999998754322233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH-HH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM-SE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~-~e  159 (488)
                         ..++.++|+||+||++|+|++|..||.+.........+... .+.  .+..++.++++||.+||..||++||++ ++
T Consensus       171 ---~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~li~~~l~~dP~~R~~~~~~  244 (316)
T cd05620         171 ---LKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVD-TPH--YPRWITKESKDILEKLFERDPTRRLGVVGN  244 (316)
T ss_pred             ---CCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhC-CCC--CCCCCCHHHHHHHHHHccCCHHHcCCChHH
Confidence               56889999999999999999999999887765555444332 222  244578999999999999999999998 58


Q ss_pred             HhcCcCCCCCCCCccccc
Q psy9090         160 LLEHPFITSLPENDLHLS  177 (488)
Q Consensus       160 ll~hp~f~~~~~~~~~~~  177 (488)
                      +++||||+.+++..+...
T Consensus       245 ~~~h~~f~~~~~~~~~~~  262 (316)
T cd05620         245 IRGHPFFKTINWTALEKR  262 (316)
T ss_pred             HHcCCCcCCCCHHHHHhC
Confidence            999999999887654333

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=3e-31  Score=265.27  Aligned_cols=177  Identities=31%  Similarity=0.523  Sum_probs=148.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        98 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  175 (323)
T cd05616          98 FKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAY--  175 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcC--
Confidence            578899999999999999999999999999999999999999999999998754332233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+|||||++|+|++|+.||.+.........+.....   ..+..+++++.+++.+||..+|.+|++.   
T Consensus       176 ---~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~  249 (323)
T cd05616         176 ---QPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNV---AYPKSMSKEAVAICKGLMTKHPGKRLGCGPE  249 (323)
T ss_pred             ---CCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCCcCCHHHHHHHHHHcccCHHhcCCCCCC
Confidence               6688999999999999999999999998887666666654322   2345689999999999999999999974   


Q ss_pred             --HHHhcCcCCCCCCCCccccccccccccc
Q psy9090         158 --SELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       158 --~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                        .++++||||+.++|.........+++.+
T Consensus       250 ~~~~i~~h~~~~~~~~~~~~~~~~~~~~~~  279 (323)
T cd05616         250 GERDIKEHAFFRYIDWEKLERKEVQPPYKP  279 (323)
T ss_pred             CHHHHhcCCCcCCCCHHHHHhCCCCCCcCC
Confidence              8999999999999887665555554443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4e-31  Score=260.32  Aligned_cols=165  Identities=28%  Similarity=0.496  Sum_probs=141.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....   ......||+.|+|||++.+  
T Consensus        98 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~--  172 (291)
T cd05612          98 FSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD---RTWTLCGTPEYLAPEVIQS--  172 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccC---CcccccCChhhcCHHHHcC--
Confidence            46888999999999999999999999999999999999999999999999876543   2234579999999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..++.++|||||||++|+|++|..||.+.........+.....   ..+..+++.+++||++||..||.+||+    
T Consensus       173 ---~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~  246 (291)
T cd05612         173 ---KGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKL---EFPRHLDLYAKDLIKKLLVVDRTRRLGNMKN  246 (291)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCc---CCCccCCHHHHHHHHHHcCCCHHHccCCccC
Confidence               5678899999999999999999999998877666666655432   234556899999999999999999995    


Q ss_pred             -HHHHhcCcCCCCCCCCcccc
Q psy9090         157 -MSELLEHPFITSLPENDLHL  176 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~  176 (488)
                       ++++++||||..++|.....
T Consensus       247 ~~~~~l~h~~~~~~~~~~~~~  267 (291)
T cd05612         247 GADDVKNHRWFKSVDWDDVPQ  267 (291)
T ss_pred             CHHHHhcCccccCCCHHHHhc
Confidence             99999999999988865433

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.97  E-value=3.7e-31  Score=264.57  Aligned_cols=172  Identities=30%  Similarity=0.504  Sum_probs=144.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (323)
T cd05575          93 FPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRK--  170 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcC--
Confidence            468889999999999999999999999999999999999999999999998754333233445679999999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|||||||++|+|++|..||...........+......   .+..+++.+.++|.+||..||.+||++   
T Consensus       171 ---~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  244 (323)
T cd05575         171 ---QPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLR---LKPNISVSARHLLEGLLQKDRTKRLGAKDD  244 (323)
T ss_pred             ---CCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCC---CCCCCCHHHHHHHHHHhhcCHHhCCCCCCC
Confidence               56889999999999999999999999988766666666554322   345679999999999999999999987   


Q ss_pred             -HHHhcCcCCCCCCCCcccccccc
Q psy9090         158 -SELLEHPFITSLPENDLHLSTVN  180 (488)
Q Consensus       158 -~ell~hp~f~~~~~~~~~~~~~~  180 (488)
                       .++++||||....|..+......
T Consensus       245 ~~~il~~~~~~~~~~~~~~~~~~~  268 (323)
T cd05575         245 FLEIKNHVFFSSINWDDLVNKKIT  268 (323)
T ss_pred             HHHHHcCCCcCCCCHHHHhhccCC
Confidence             69999999999888765444333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0614|consensus

Probab=99.97  E-value=2e-31  Score=262.36  Aligned_cols=180  Identities=27%  Similarity=0.476  Sum_probs=162.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |.+..+++|+..+++|++|||++|||+|||||+|.+++.+|.+||.|||+++..... .++-+++|||.|.|||++..  
T Consensus       517 Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g-~KTwTFcGTpEYVAPEIILn--  593 (732)
T KOG0614|consen  517 FDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSG-RKTWTFCGTPEYVAPEIILN--  593 (732)
T ss_pred             cccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccC-CceeeecCCcccccchhhhc--
Confidence            456788999999999999999999999999999999999999999999999998765 67789999999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         .+.+.++|.||||+++|||++|.+||.+.++......|+++..... .|..++..+.+||+++...+|.+|..    
T Consensus       594 ---KGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~-~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~  669 (732)
T KOG0614|consen  594 ---KGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIE-FPRRITKTATDLIKKLCRDNPTERLGYQKG  669 (732)
T ss_pred             ---cCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhh-cccccchhHHHHHHHHHhcCcHhhhccccC
Confidence               6788999999999999999999999999999888888887754333 45778999999999999999999985    


Q ss_pred             -HHHHhcCcCCCCCCCCcccccccccccccch
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYKDQE  187 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~~~~  187 (488)
                       +.+|..|.||.+++|+.+......+++.++.
T Consensus       670 gI~DIkkH~Wf~gfdweglr~~~L~pPi~~~v  701 (732)
T KOG0614|consen  670 GINDIKKHRWFEGFDWEGLRSRTLPPPIIPSV  701 (732)
T ss_pred             ChHHHHhhhhhhcCChhhhhhccCCCCccccC
Confidence             7999999999999999998888887776543

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=4.4e-31  Score=261.48  Aligned_cols=167  Identities=23%  Similarity=0.497  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++++.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..............+|+.|+|||++.+. 
T Consensus       100 ~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  178 (303)
T cd07869         100 LHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGS-  178 (303)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCC-
Confidence            4678899999999999999999999999999999999999999999999987543332333455789999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHh---CCCCC----------C----------------C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVR---NPPPG----------L----------------Y  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~---~~~~~----------~----------------~  130 (488)
                         ..++.++|+||+||++|+|++|..||.+.... ..+..+..   .+...          .                .
T Consensus       179 ---~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (303)
T cd07869         179 ---TEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAW  255 (303)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHh
Confidence               45788999999999999999999999875432 22222211   11000          0                0


Q ss_pred             CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       131 ~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ....+++.+++|+.+||+.||++|||+.++++||||++++.
T Consensus       256 ~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~~  296 (303)
T cd07869         256 NKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPP  296 (303)
T ss_pred             hccCCChHHHHHHHHHhccCchhccCHHHHhcCcccccCCh
Confidence            01123567899999999999999999999999999998765

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=4.8e-31  Score=265.57  Aligned_cols=168  Identities=26%  Similarity=0.425  Sum_probs=143.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....   ......||+.|+|||++.+  
T Consensus       128 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~---~~~~~~gt~~y~aPE~~~~--  202 (340)
T PTZ00426        128 FPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT---RTYTLCGTPEYIAPEILLN--  202 (340)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC---CcceecCChhhcCHHHHhC--
Confidence            57889999999999999999999999999999999999999999999999876542   2345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|+||+||++|+|++|.+||.+.++......+.....   ..+..+++.++++|++||..+|.+|+     
T Consensus       203 ---~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~  276 (340)
T PTZ00426        203 ---VGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGII---YFPKFLDNNCKHLMKKLLSHDLTKRYGNLKK  276 (340)
T ss_pred             ---CCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCC---CCCCCCCHHHHHHHHHHcccCHHHcCCCCCC
Confidence               5678899999999999999999999998877665556554432   23556799999999999999999995     


Q ss_pred             CHHHHhcCcCCCCCCCCccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~  179 (488)
                      +++++++||||.+++|........
T Consensus       277 ~~~~~~~hp~f~~~~~~~~~~~~~  300 (340)
T PTZ00426        277 GAQNVKEHPWFGNIDWVSLLHKNV  300 (340)
T ss_pred             CHHHHHcCCCcCCCCHHHHHhCCC
Confidence            899999999999998875544433

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=4.9e-31  Score=263.71  Aligned_cols=167  Identities=31%  Similarity=0.545  Sum_probs=142.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+  
T Consensus        92 ~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  169 (323)
T cd05595          92 FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED--  169 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccC--
Confidence            578899999999999999999999999999999999999999999999998754332233345679999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|+|||||++|+|++|+.||...........+.....   ..+..+++.+.+||.+||..||.+|+     
T Consensus       170 ---~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  243 (323)
T cd05595         170 ---NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEI---RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPS  243 (323)
T ss_pred             ---CCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCC---CCCCCCCHHHHHHHHHHccCCHHHhCCCCCC
Confidence               5688999999999999999999999988776655555544322   23457899999999999999999998     


Q ss_pred             CHHHHhcCcCCCCCCCCccc
Q psy9090         156 YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~  175 (488)
                      ++.++++||||.+..|....
T Consensus       244 ~~~~~l~h~~~~~~~~~~~~  263 (323)
T cd05595         244 DAKEVMEHRFFLSINWQDVV  263 (323)
T ss_pred             CHHHHHcCCCcCCCCHHHHH
Confidence            89999999999998876543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0695|consensus

Probab=99.97  E-value=3.9e-31  Score=248.56  Aligned_cols=183  Identities=32%  Similarity=0.563  Sum_probs=159.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |||+.++++..+|..||.|||++||++||||.+|+|++..|++||+|+|+++..-.+....++++|||.|+|||++++  
T Consensus       348 lpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrg--  425 (593)
T KOG0695|consen  348 LPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRG--  425 (593)
T ss_pred             CcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcc--
Confidence            689999999999999999999999999999999999999999999999999987766788899999999999999998  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCC-------CCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFE-------DMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  153 (488)
                         ..|+.++|+|+|||+++||+.|+.||.       +.+....+++++-...  ...|..+|-.+..+++..|.+||.+
T Consensus       426 ---eeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekq--iriprslsvkas~vlkgflnkdp~e  500 (593)
T KOG0695|consen  426 ---EEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQ--IRIPRSLSVKASHVLKGFLNKDPKE  500 (593)
T ss_pred             ---cccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhc--ccccceeehhhHHHHHHhhcCCcHH
Confidence               789999999999999999999999994       2333455666654332  2345667888889999999999999


Q ss_pred             CC------CHHHHhcCcCCCCCCCCcccccccccccccchhhh
Q psy9090         154 RP------YMSELLEHPFITSLPENDLHLSTVNCQYKDQELQT  190 (488)
Q Consensus       154 Rp------s~~ell~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  190 (488)
                      |.      .+.++..|+||+.++|+.+..+.+.++|+++-...
T Consensus       501 rlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p~i~~d  543 (593)
T KOG0695|consen  501 RLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQPQITDD  543 (593)
T ss_pred             hcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCCccccc
Confidence            96      36899999999999999999999999998764433

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.97  E-value=5e-31  Score=264.10  Aligned_cols=178  Identities=33%  Similarity=0.572  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus        93 l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (327)
T cd05617          93 LPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRG--  170 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCC--
Confidence            578899999999999999999999999999999999999999999999998754332233455679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCC------ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDM------HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                         ..++.++|+|||||++|+|++|..||...      .......+.......  ..+..++..+.++|.+||..||.+|
T Consensus       171 ---~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~li~~~L~~dP~~R  245 (327)
T cd05617         171 ---EEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPI--RIPRFLSVKASHVLKGFLNKDPKER  245 (327)
T ss_pred             ---CCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHHhccCHHHc
Confidence               56889999999999999999999999532      222333333333222  2456689999999999999999999


Q ss_pred             CC------HHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         155 PY------MSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       155 ps------~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                      ++      ++++++||||+.++|+.+......+++.+
T Consensus       246 ~~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~  282 (327)
T cd05617         246 LGCQPQTGFSDIKSHTFFRSIDWDLLEKKQVTPPFKP  282 (327)
T ss_pred             CCCCCCCCHHHHHcCCCCCCCCHHHHHhCCCCCCccC
Confidence            97      57999999999999886655544444433

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=8.6e-31  Score=257.56  Aligned_cols=162  Identities=23%  Similarity=0.482  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............+++.|+|||++.+. 
T Consensus       100 ~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  178 (288)
T cd07871         100 MSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS-  178 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCC-
Confidence            4678899999999999999999999999999999999999999999999987654332333455789999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCC------------------------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPG------------------------LYRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~------------------------~~~~~  133 (488)
                         ..++.++|+||+||++|+|++|++||.+....+.+..+...   +.+.                        .....
T Consensus       179 ---~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (288)
T cd07871         179 ---TEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAP  255 (288)
T ss_pred             ---cccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCC
Confidence               45788999999999999999999999887765554444321   0000                        00012


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..++++++||.+||..||.+|||++++++||||
T Consensus       256 ~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         256 RLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             CCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            357889999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=1.1e-30  Score=261.19  Aligned_cols=167  Identities=31%  Similarity=0.553  Sum_probs=142.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||++|++||||||+||+++.++.+||+|||+++.............|++.|+|||++.+  
T Consensus        98 l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--  175 (324)
T cd05589          98 FSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTE--  175 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcC--
Confidence            578899999999999999999999999999999999999999999999998754333233456679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|+|||||++|+|++|..||.+.........+.....   ..+..+++.+.++|.+||..||.+||     
T Consensus       176 ---~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  249 (324)
T cd05589         176 ---TSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEV---RYPRFLSREAISIMRRLLRRNPERRLGSGEK  249 (324)
T ss_pred             ---CCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCCCCCHHHHHHHHHHhhcCHhHcCCCCCC
Confidence               5688899999999999999999999998877666665554322   23456799999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCccc
Q psy9090         156 YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~  175 (488)
                      ++.++++||||+.+.+....
T Consensus       250 ~~~~l~~~~~f~~~~~~~~~  269 (324)
T cd05589         250 DAEDVKKQPFFRDINWDDLL  269 (324)
T ss_pred             CHHHHhhCCCcCCCCHHHHH
Confidence            68999999999988766543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=8.9e-31  Score=262.54  Aligned_cols=163  Identities=26%  Similarity=0.521  Sum_probs=140.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....   ......||+.|+|||++.+  
T Consensus       115 ~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~--  189 (329)
T PTZ00263        115 FPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD---RTFTLCGTPEYLAPEVIQS--  189 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCC---CcceecCChhhcCHHHHcC--
Confidence            47888999999999999999999999999999999999999999999999876543   2234679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..++.++|||||||++|+|++|..||.+.........+.....   ..+..++..+++||.+||..||.+||+    
T Consensus       190 ---~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  263 (329)
T PTZ00263        190 ---KGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRL---KFPNWFDGRARDLVKGLLQTDHTKRLGTLKG  263 (329)
T ss_pred             ---CCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCc---CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCC
Confidence               5678899999999999999999999988776665555554322   234557899999999999999999996    


Q ss_pred             -HHHHhcCcCCCCCCCCcc
Q psy9090         157 -MSELLEHPFITSLPENDL  174 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~  174 (488)
                       +++++.||||++..|..+
T Consensus       264 ~~~~ll~hp~f~~~~~~~~  282 (329)
T PTZ00263        264 GVADVKNHPYFHGANWDKL  282 (329)
T ss_pred             CHHHHhcCCccCCCCHHHH
Confidence             799999999998877654

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.97  E-value=1e-30  Score=255.90  Aligned_cols=172  Identities=31%  Similarity=0.508  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++..............||+.|+|||++.+  
T Consensus        94 l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--  171 (280)
T cd05608          94 FPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQG--  171 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcC--
Confidence            578899999999999999999999999999999999999999999999998765443333345678999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEHRP----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----  155 (488)
                         ..++.++|+||+||++|+|++|+.||................ ......+..+++.+.+++.+||..||++||    
T Consensus       172 ---~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  248 (280)
T cd05608         172 ---EEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRD  248 (280)
T ss_pred             ---CCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCC
Confidence               568889999999999999999999997654321111111111 112223456899999999999999999999    


Q ss_pred             -CHHHHhcCcCCCCCCCCccccc
Q psy9090         156 -YMSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       156 -s~~ell~hp~f~~~~~~~~~~~  177 (488)
                       +++++++||||++..|..+...
T Consensus       249 ~~~~~~l~h~~~~~~~~~~~~~~  271 (280)
T cd05608         249 GNCDGLRTHPLFRDLNWRQLEAG  271 (280)
T ss_pred             CCHHHHhcChhhhcCCHhHHhhc
Confidence             7899999999999887755333

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=1.2e-30  Score=256.38  Aligned_cols=160  Identities=26%  Similarity=0.451  Sum_probs=133.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       107 ~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  183 (290)
T cd07862         107 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQ--  183 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCC-cccccccccccccChHHHhC--
Confidence            467899999999999999999999999999999999999999999999998765433 33345578999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---CCC---------------------CCCCCcC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---PGL---------------------YRASNWS  136 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---~~~---------------------~~~~~~s  136 (488)
                         ..++.++||||+||++|+|++|.+||.+......+..+.....   +..                     .....++
T Consensus       184 ---~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (290)
T cd07862         184 ---SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID  260 (290)
T ss_pred             ---CCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCC
Confidence               5688899999999999999999999998876666555543210   000                     0012457


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      +.+++|+.+||..||++|||+.++++||||
T Consensus       261 ~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         261 ELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             HHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.97  E-value=8.7e-31  Score=261.34  Aligned_cols=171  Identities=32%  Similarity=0.541  Sum_probs=143.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus        93 l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--  170 (318)
T cd05570          93 FDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSY--  170 (318)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcC--
Confidence            578899999999999999999999999999999999999999999999998753332233345579999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+||+||++|+|++|..||.+.........+.... .  ..+..++..+.+||++||..||.+|||+   
T Consensus       171 ---~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~  244 (318)
T cd05570         171 ---QPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDE-V--RYPRWLSKEAKSILKSFLTKNPEKRLGCLPT  244 (318)
T ss_pred             ---CCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCC-C--CCCCcCCHHHHHHHHHHccCCHHHcCCCCCC
Confidence               568899999999999999999999998877655555544332 1  2345679999999999999999999999   


Q ss_pred             --HHHhcCcCCCCCCCCccccccc
Q psy9090         158 --SELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       158 --~ell~hp~f~~~~~~~~~~~~~  179 (488)
                        .+++.||||+...|........
T Consensus       245 ~~~~ll~~~~~~~~~~~~~~~~~~  268 (318)
T cd05570         245 GEQDIKGHPFFREIDWDKLERKEI  268 (318)
T ss_pred             CHHHHhcCCCcCCCCHHHHHhCCC
Confidence              9999999999988765433333

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=1.4e-30  Score=260.43  Aligned_cols=167  Identities=31%  Similarity=0.532  Sum_probs=142.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  174 (323)
T cd05584          97 FMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMR--  174 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccC--
Confidence            467889999999999999999999999999999999999999999999998754333233445679999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|||||||++|+|++|+.||...........+.....   ..+..+++.+.+||.+||..+|++||     
T Consensus       175 ---~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  248 (323)
T cd05584         175 ---SGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKL---NLPPYLTPEARDLLKKLLKRNPSSRLGAGPG  248 (323)
T ss_pred             ---CCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHcccCHhHcCCCCCC
Confidence               5678899999999999999999999998877666666655432   23556799999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCccc
Q psy9090         156 YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~  175 (488)
                      ++.++++||||....|..+.
T Consensus       249 ~~~~l~~h~~~~~~~~~~~~  268 (323)
T cd05584         249 DAAEVQSHPFFRHVNWDDLL  268 (323)
T ss_pred             CHHHHhcCCCcCCCCHHHHh
Confidence            89999999999988776543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=5.9e-31  Score=263.32  Aligned_cols=167  Identities=30%  Similarity=0.549  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||+ +||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+ 
T Consensus        92 l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-  170 (325)
T cd05594          92 FSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLED-  170 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHcc-
Confidence            5788999999999999999997 79999999999999999999999999998754332233345679999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC----
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP----  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----  155 (488)
                          ..++.++|||||||++|+|++|..||.+.........+....   ...+..+++++.+||.+||..||++|+    
T Consensus       171 ----~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~  243 (325)
T cd05594         171 ----NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE---IRFPRTLSPEAKSLLSGLLKKDPKQRLGGGP  243 (325)
T ss_pred             ----CCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCC---CCCCCCCCHHHHHHHHHHhhcCHHHhCCCCC
Confidence                568899999999999999999999998877655544443322   223456799999999999999999997    


Q ss_pred             -CHHHHhcCcCCCCCCCCccc
Q psy9090         156 -YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 -s~~ell~hp~f~~~~~~~~~  175 (488)
                       ++.++++||||....|....
T Consensus       244 ~~~~~il~h~~~~~~~~~~~~  264 (325)
T cd05594         244 DDAKEIMQHKFFAGIVWQDVY  264 (325)
T ss_pred             CCHHHHhcCCCcCCCCHHHHH
Confidence             89999999999998776543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG4717|consensus

Probab=99.97  E-value=1.6e-30  Score=256.10  Aligned_cols=163  Identities=30%  Similarity=0.524  Sum_probs=145.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE-ccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl-~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |+|+.++.|++||+.|+.|||+..+|||||||+|+.+ .+-|-|||.|||++..+.+. ....+.||+..|.|||++.+ 
T Consensus       115 l~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG-~kL~TsCGSLAYSAPEILLG-  192 (864)
T KOG4717|consen  115 LNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPG-KKLTTSCGSLAYSAPEILLG-  192 (864)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCc-chhhcccchhhccCchhhhc-
Confidence            5789999999999999999999999999999999876 56789999999999888765 66788999999999999998 


Q ss_pred             ccCCCCCC-CccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYD-NRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~-~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..|+ +++||||||||||-|+||++||...+..+.+..|+.-   ....|...|.++++||..||..||.+|.|.+
T Consensus       193 ----DsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDC---KYtvPshvS~eCrdLI~sMLvRdPkkRAslE  265 (864)
T KOG4717|consen  193 ----DSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDC---KYTVPSHVSKECRDLIQSMLVRDPKKRASLE  265 (864)
T ss_pred             ----CccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcc---cccCchhhhHHHHHHHHHHHhcCchhhccHH
Confidence                5565 6899999999999999999999988888877777643   2335677899999999999999999999999


Q ss_pred             HHhcCcCCCCCCCC
Q psy9090         159 ELLEHPFITSLPEN  172 (488)
Q Consensus       159 ell~hp~f~~~~~~  172 (488)
                      +|..++|++..+..
T Consensus       266 eI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  266 EIVSTSWLQAGDRG  279 (864)
T ss_pred             HHhccccccCCCCC
Confidence            99999999987654

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.97  E-value=1.1e-30  Score=260.36  Aligned_cols=170  Identities=29%  Similarity=0.526  Sum_probs=141.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (316)
T cd05619          93 FDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLG--  170 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcC--
Confidence            467889999999999999999999999999999999999999999999998754322233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH-H
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS-E  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~-e  159 (488)
                         ..++.++|+||+||++|+|++|..||.+.........+.... +.  .+..++.+++++|.+||..+|++||++. +
T Consensus       171 ---~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~li~~~l~~~P~~R~~~~~~  244 (316)
T cd05619         171 ---QKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDN-PC--YPRWLTREAKDILVKLFVREPERRLGVKGD  244 (316)
T ss_pred             ---CCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC-CC--CCccCCHHHHHHHHHHhccCHhhcCCChHH
Confidence               568899999999999999999999998877655554443322 22  2345789999999999999999999996 8


Q ss_pred             HhcCcCCCCCCCCcccccc
Q psy9090         160 LLEHPFITSLPENDLHLST  178 (488)
Q Consensus       160 ll~hp~f~~~~~~~~~~~~  178 (488)
                      +++||||+.+.|..+....
T Consensus       245 l~~h~~~~~~~~~~~~~~~  263 (316)
T cd05619         245 IRQHPFFREIDWSALEERE  263 (316)
T ss_pred             HHcCcccCCCCHHHHHhCC
Confidence            9999999998886554333

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=1.1e-30  Score=261.95  Aligned_cols=169  Identities=32%  Similarity=0.575  Sum_probs=138.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus        93 l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (329)
T cd05588          93 LPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRG--  170 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcC--
Confidence            578999999999999999999999999999999999999999999999998753332233455689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC--------hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH--------PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                         ..++.++|+||+||++|+|++|+.||....        ......+.+.....  ..+..++..+.++|.+||..||.
T Consensus       171 ---~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~li~~~L~~dP~  245 (329)
T cd05588         171 ---EDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQI--RIPRSLSVKASSVLKGFLNKDPK  245 (329)
T ss_pred             ---CCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHhccCHH
Confidence               568899999999999999999999995311        11223333333222  23556799999999999999999


Q ss_pred             CCCC------HHHHhcCcCCCCCCCCcccc
Q psy9090         153 HRPY------MSELLEHPFITSLPENDLHL  176 (488)
Q Consensus       153 ~Rps------~~ell~hp~f~~~~~~~~~~  176 (488)
                      +|+|      ++++++||||..++|.....
T Consensus       246 ~R~~~~~~~~~~~i~~hp~~~~~~~~~~~~  275 (329)
T cd05588         246 ERLGCHPQTGFRDIKSHPFFRNIDWDLLEQ  275 (329)
T ss_pred             HcCCCCCCCCHHHHhcCCCCCCCCHHHHHh
Confidence            9987      78999999999988765443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.97  E-value=1.1e-30  Score=271.70  Aligned_cols=167  Identities=23%  Similarity=0.449  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+++..... .......||+.|+|||++.+.
T Consensus       167 l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~-~~~~~~~~t~~y~aPE~~~~~  245 (440)
T PTZ00036        167 LPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAG-QRSVSYICSRFYRAPELMLGA  245 (440)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhccCC-CCcccCCCCcCccCHHHhcCC
Confidence            46788999999999999999999999999999999999665 6999999999865433 233455789999999998652


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---C----------------CCC-------CCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---P----------------PGL-------YRAS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---~----------------~~~-------~~~~  133 (488)
                          ..|+.++||||+||++|+|++|.+||.+......+.++....   .                +..       ..+.
T Consensus       246 ----~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~  321 (440)
T PTZ00036        246 ----TNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPK  321 (440)
T ss_pred             ----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhcc
Confidence                468899999999999999999999998877655555443210   0                000       0122


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ..++++++||.+||..||.+|||+.++++||||..+...
T Consensus       322 ~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~~  360 (440)
T PTZ00036        322 GTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRDP  360 (440)
T ss_pred             CCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhcc
Confidence            457889999999999999999999999999999887554

>KOG0612|consensus

Probab=99.97  E-value=7.2e-31  Score=279.39  Aligned_cols=176  Identities=24%  Similarity=0.426  Sum_probs=148.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccc-ccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-TFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~-~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +||+.+++|+..|+.||.-||+.|+|||||||+|||++..|+|||+|||.|-.... +.-.....+|||.|++||+++..
T Consensus       172 ~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~  251 (1317)
T KOG0612|consen  172 LPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQ  251 (1317)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999877663 33455677999999999999875


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCCCCC--
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEHRPY--  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps--  156 (488)
                      ......|++.||+||+||++|||+.|..||......+..-+|.... .-.++....+|+++++||.++|. +|+.|..  
T Consensus       252 ~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrn  330 (1317)
T KOG0612|consen  252 GDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRN  330 (1317)
T ss_pred             cCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhc-Chhhhcccc
Confidence            4444779999999999999999999999999887766666666432 11222235689999999999985 5889988  


Q ss_pred             -HHHHhcCcCCCCCCCCccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~  177 (488)
                       ++++..||||.+++|+.+...
T Consensus       331 giedik~HpFF~g~~W~~iR~~  352 (1317)
T KOG0612|consen  331 GIEDIKNHPFFEGIDWDNIRES  352 (1317)
T ss_pred             cHHHHHhCccccCCChhhhhhc
Confidence             999999999999999765433

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.2e-31  Score=264.24  Aligned_cols=171  Identities=29%  Similarity=0.520  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++.............+||+.|+|||++.+. 
T Consensus        93 ~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~-  171 (330)
T cd05586          93 FSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDE-  171 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCC-
Confidence            5788999999999999999999999999999999999999999999999987543332334456799999999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC----C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP----Y  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----s  156 (488)
                         ..++.++|||||||++|+|++|..||...........+..... .. ....+++.+++||++||..||.+||    +
T Consensus       172 ---~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~li~~~L~~~P~~R~~~~~~  246 (330)
T cd05586         172 ---KGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKV-RF-PKNVLSDEGRQFVKGLLNRNPQHRLGAHRD  246 (330)
T ss_pred             ---CCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCC-CC-CCccCCHHHHHHHHHHcCCCHHHCCCCCCC
Confidence               3578899999999999999999999988776555555543322 11 2234689999999999999999998    6


Q ss_pred             HHHHhcCcCCCCCCCCccccc
Q psy9090         157 MSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~  177 (488)
                      +.++++||||....|......
T Consensus       247 ~~~ll~h~~~~~~~~~~~~~~  267 (330)
T cd05586         247 AVELKEHPFFADIDWDLLSKK  267 (330)
T ss_pred             HHHHhcCccccCCCHHHHHhC
Confidence            899999999998877654433

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=1.4e-30  Score=261.15  Aligned_cols=176  Identities=30%  Similarity=0.561  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        93 l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (329)
T cd05618          93 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG--  170 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcC--
Confidence            578899999999999999999999999999999999999999999999998754333233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCC--------ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDM--------HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~--------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                         ..++.++|+|||||++|+|++|..||...        .......+.......  ..+...+..+.++|++||..||.
T Consensus       171 ---~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~--~~p~~~~~~~~~ll~~~L~~dP~  245 (329)
T cd05618         171 ---EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI--RIPRSLSVKAASVLKSFLNKDPK  245 (329)
T ss_pred             ---CCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCC--CCCCCCCHHHHHHHHHHhcCCHH
Confidence               56888999999999999999999999521        111222232222222  23556789999999999999999


Q ss_pred             CCCC------HHHHhcCcCCCCCCCCccccccccccc
Q psy9090         153 HRPY------MSELLEHPFITSLPENDLHLSTVNCQY  183 (488)
Q Consensus       153 ~Rps------~~ell~hp~f~~~~~~~~~~~~~~~~~  183 (488)
                      +||+      +.++++||||+.++|.........+++
T Consensus       246 ~R~~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~~~  282 (329)
T cd05618         246 ERLGCHPQTGFADIQGHPFFRNVDWDLMEQKQVVPPF  282 (329)
T ss_pred             HcCCCCCCCCHHHHhcCCCCCCCCHHHHHcCCCCcCc
Confidence            9998      589999999999888755444443333

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.97  E-value=2.2e-30  Score=259.04  Aligned_cols=176  Identities=29%  Similarity=0.525  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        98 l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  175 (323)
T cd05615          98 FKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAY--  175 (323)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcC--
Confidence            578999999999999999999999999999999999999999999999998754333233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..++.++|+||+||++|+|++|.+||.+.........+.....   ..+..++..+.+++.+||..+|.+|++    
T Consensus       176 ---~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~  249 (323)
T cd05615         176 ---QPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNV---SYPKSLSKEAVSICKGLMTKHPSKRLGCGPE  249 (323)
T ss_pred             ---CCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCccCCHHHHHHHHHHcccCHhhCCCCCCC
Confidence               5688999999999999999999999998877666666654332   234567899999999999999999997    


Q ss_pred             -HHHHhcCcCCCCCCCCcccccccccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYK  184 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~  184 (488)
                       .+++++||||..++|..+......+++.
T Consensus       250 ~~~~i~~h~~f~~~~~~~~~~~~~~~~~~  278 (323)
T cd05615         250 GERDIREHAFFRRIDWDKLENREIQPPFK  278 (323)
T ss_pred             CHHHHhcCcccCCCCHHHHhcCCCCcCcc
Confidence             4789999999999887665544444443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0032|consensus

Probab=99.97  E-value=3e-30  Score=260.04  Aligned_cols=164  Identities=32%  Similarity=0.560  Sum_probs=144.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC----CcEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~----~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      ++|..+..+++||+.+++|||+.||+||||||+|+|+...    +.+|++|||++..... .......+|||.|+|||++
T Consensus       132 ~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~-~~~~~~~~Gtp~y~APEvl  210 (382)
T KOG0032|consen  132 YSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP-GERLHTIVGTPEYVAPEVL  210 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC-CceEeeecCCccccCchhh
Confidence            5899999999999999999999999999999999999643    5799999999998776 4567788999999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..     .+|+..+||||+|+++|.|++|.+||.+.+.......+..... ........+|..++++|.+||..||.+|+
T Consensus       211 ~~-----~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~  285 (382)
T KOG0032|consen  211 GG-----RPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRL  285 (382)
T ss_pred             cC-----CCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCC
Confidence            76     6899999999999999999999999999998777777776543 12223456699999999999999999999


Q ss_pred             CHHHHhcCcCCCCCC
Q psy9090         156 YMSELLEHPFITSLP  170 (488)
Q Consensus       156 s~~ell~hp~f~~~~  170 (488)
                      |+.++|+|||++...
T Consensus       286 ta~~~L~HpWi~~~~  300 (382)
T KOG0032|consen  286 TAAQALQHPWIKSIG  300 (382)
T ss_pred             CHHHHhcCccccCCc
Confidence            999999999998753

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.97  E-value=1.5e-30  Score=260.46  Aligned_cols=170  Identities=28%  Similarity=0.491  Sum_probs=143.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (325)
T cd05602          93 FLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHK--  170 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcC--
Confidence            467889999999999999999999999999999999999999999999998754333233455679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH--
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS--  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~--  158 (488)
                         ..++.++|||||||++|+|++|.+||.+.........+...+.   ..+..++..+.++|.+||..+|.+|+++.  
T Consensus       171 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  244 (325)
T cd05602         171 ---QPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPL---QLKPNITNSARHLLEGLLQKDRTKRLGAKDD  244 (325)
T ss_pred             ---CCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCc---CCCCCCCHHHHHHHHHHcccCHHHCCCCCCC
Confidence               5688999999999999999999999998877666666554432   23456899999999999999999999875  


Q ss_pred             --HHhcCcCCCCCCCCcccccc
Q psy9090         159 --ELLEHPFITSLPENDLHLST  178 (488)
Q Consensus       159 --ell~hp~f~~~~~~~~~~~~  178 (488)
                        ++++|+||..++|..+....
T Consensus       245 ~~~i~~~~~~~~~~~~~~~~~~  266 (325)
T cd05602         245 FMEIKNHIFFSPINWDDLINKK  266 (325)
T ss_pred             HHHHhcCcccCCCCHHHHHhCC
Confidence              89999999998887654333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=3e-30  Score=262.19  Aligned_cols=170  Identities=25%  Similarity=0.433  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----------------------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----------------------   58 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                      
T Consensus        98 l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (363)
T cd05628          98 LTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMN  177 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccc
Confidence            5789999999999999999999999999999999999999999999999987542110                      


Q ss_pred             -------------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC
Q psy9090          59 -------------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP  125 (488)
Q Consensus        59 -------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~  125 (488)
                                   ......+||+.|+|||++.+     ..++.++|||||||++|+|++|+.||.+........++....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~-----~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~  252 (363)
T cd05628         178 SKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQ-----TGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWK  252 (363)
T ss_pred             cccccchhhhccccccccccCCccccCHHHHcC-----CCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCc
Confidence                         00124579999999999976     568899999999999999999999999887766666665422


Q ss_pred             -CCCCCCCCCcCHHHHHHHHHhcccCCC---CCCCHHHHhcCcCCCCCCCCcccc
Q psy9090         126 -PPGLYRASNWSQHYVDFIAECLEKNPE---HRPYMSELLEHPFITSLPENDLHL  176 (488)
Q Consensus       126 -~~~~~~~~~~s~~~~~li~~~L~~dP~---~Rps~~ell~hp~f~~~~~~~~~~  176 (488)
                       ....+....++++++++|.+|+. +|.   .||+++++++||||++++|+.+..
T Consensus       253 ~~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~~~~~~~~  306 (363)
T cd05628         253 ETLIFPPEVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGVDWEHIRE  306 (363)
T ss_pred             CcccCCCcCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCCCHHHHHh
Confidence             12222234578999999999875 444   458999999999999999886543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0983|consensus

Probab=99.97  E-value=3.5e-30  Score=236.44  Aligned_cols=168  Identities=33%  Similarity=0.642  Sum_probs=142.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++|..+-++...++.||.||.. +||+|||+||+|||++..|.|||||||.+-..... .......|-+.|||||.+.-.
T Consensus       188 iPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdS-kAhtrsAGC~~YMaPERidp~  266 (391)
T KOG0983|consen  188 IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDS-KAHTRSAGCAAYMAPERIDPP  266 (391)
T ss_pred             chHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecc-cccccccCCccccCccccCCC
Confidence            4678888999999999999975 68999999999999999999999999999776553 334455788999999998643


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                        ....|+.++||||||+.++||.||+.||.+.+ ..+.+.+++...+|.++....+|+.+++|+..||.+|+.+||...
T Consensus       267 --~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~  344 (391)
T KOG0983|consen  267 --DKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYN  344 (391)
T ss_pred             --CCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchH
Confidence              24679999999999999999999999998754 356666777666666655556999999999999999999999999


Q ss_pred             HHhcCcCCCCCCC
Q psy9090         159 ELLEHPFITSLPE  171 (488)
Q Consensus       159 ell~hp~f~~~~~  171 (488)
                      ++|+|||+.....
T Consensus       345 ~Ll~h~Fi~~ye~  357 (391)
T KOG0983|consen  345 KLLEHPFIKRYET  357 (391)
T ss_pred             HHhcCcceeecch
Confidence            9999999987543

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.97  E-value=1.4e-30  Score=260.56  Aligned_cols=169  Identities=34%  Similarity=0.538  Sum_probs=142.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (325)
T cd05604          93 FPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRK--  170 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcC--
Confidence            578899999999999999999999999999999999999999999999998754333233445679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|||||||++|+|++|.+||...........+.....   ..+...+..+.++|.+||..+|.+||++   
T Consensus       171 ---~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~  244 (325)
T cd05604         171 ---QPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPL---VLRPGASLTAWSILEELLEKDRQRRLGAKED  244 (325)
T ss_pred             ---CCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCc---cCCCCCCHHHHHHHHHHhccCHHhcCCCCCC
Confidence               5688899999999999999999999998776666666555432   1234578999999999999999999976   


Q ss_pred             -HHHhcCcCCCCCCCCccccc
Q psy9090         158 -SELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       158 -~ell~hp~f~~~~~~~~~~~  177 (488)
                       .++++||||...+|......
T Consensus       245 ~~~i~~h~~f~~~~~~~~~~~  265 (325)
T cd05604         245 FLEIQEHPFFESLSWTDLEQK  265 (325)
T ss_pred             HHHHhcCCCcCCCCHHHHHhC
Confidence             58999999999887655433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.97  E-value=3.1e-30  Score=258.78  Aligned_cols=174  Identities=33%  Similarity=0.512  Sum_probs=138.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......||+.|+|||++.+.
T Consensus       102 ~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  181 (332)
T cd05614         102 FSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGK  181 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCC
Confidence            5788999999999999999999999999999999999999999999999987643321 223356799999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-  155 (488)
                          ..++.++|||||||++|+|++|..||.....   .......+....+.  .+..+++.+.++|.+||..||++|| 
T Consensus       182 ----~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~dp~~R~~  255 (332)
T cd05614         182 ----GGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPP--FPSFIGPEAQDLLHKLLRKDPKKRLG  255 (332)
T ss_pred             ----CCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence                3477899999999999999999999964321   12222222222222  3456799999999999999999999 


Q ss_pred             ----CHHHHhcCcCCCCCCCCcccccccc
Q psy9090         156 ----YMSELLEHPFITSLPENDLHLSTVN  180 (488)
Q Consensus       156 ----s~~ell~hp~f~~~~~~~~~~~~~~  180 (488)
                          +++++++||||+...|.........
T Consensus       256 ~~~~~~~~~l~h~~~~~~~~~~~~~~~~~  284 (332)
T cd05614         256 AGPQGASEIKEHPFFKGLDWEALALRKVN  284 (332)
T ss_pred             CCCCCHHHHHcCCCcCCCCHHHHHhCCCC
Confidence                8899999999998877655443333

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.97  E-value=3.2e-30  Score=262.62  Aligned_cols=173  Identities=23%  Similarity=0.364  Sum_probs=142.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++....... .......||+.|+|||++.+.
T Consensus       139 l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  218 (370)
T cd05596         139 IPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQ  218 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccC
Confidence            4788999999999999999999999999999999999999999999999987654321 123456799999999998652


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCC--CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEH--RPY  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~--Rps  156 (488)
                      .. ...++.++|+|||||++|+|++|.+||.+.........+..... ...+....+|.++++||.+||..+|.+  |+|
T Consensus       219 ~~-~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s  297 (370)
T cd05596         219 GG-DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNG  297 (370)
T ss_pred             CC-CCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCC
Confidence            11 13478899999999999999999999998877666666654322 222233457999999999999999988  999


Q ss_pred             HHHHhcCcCCCCCCCCcc
Q psy9090         157 MSELLEHPFITSLPENDL  174 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~  174 (488)
                      ++++++||||+..+|...
T Consensus       298 ~~ell~h~~~~~~~~~~~  315 (370)
T cd05596         298 VDEIKSHPFFKNDQWTFD  315 (370)
T ss_pred             HHHHhcCcccCCCChhhH
Confidence            999999999998777643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0595|consensus

Probab=99.97  E-value=2.7e-30  Score=249.74  Aligned_cols=164  Identities=30%  Similarity=0.605  Sum_probs=143.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC------CcEEEEecCCccccccccCccccccCCCccccch
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD------GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPE   74 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~------~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE   74 (488)
                      ++|..++.++.||+.||++||+++||||||||.|||++.+      -.+||+|||+++..... ....+.+|+|.|||||
T Consensus       106 l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~-~~a~tlcGSplYMAPE  184 (429)
T KOG0595|consen  106 LPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG-SMAETLCGSPLYMAPE  184 (429)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch-hHHHHhhCCccccCHH
Confidence            6899999999999999999999999999999999999865      45899999999988754 5667889999999999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +++.     ..|+.|+|+||+|+++|+|++|++||...++.+....+.++.......+...+....+|+...|..+|..|
T Consensus       185 V~~~-----~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~  259 (429)
T KOG0595|consen  185 VIMS-----QQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKDR  259 (429)
T ss_pred             HHHh-----ccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCcccc
Confidence            9976     78999999999999999999999999999988877766554333333344557778899999999999999


Q ss_pred             CCHHHHhcCcCCCCCC
Q psy9090         155 PYMSELLEHPFITSLP  170 (488)
Q Consensus       155 ps~~ell~hp~f~~~~  170 (488)
                      .+..+-+.|++...-+
T Consensus       260 ~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  260 ISFEDFFDHPFLAANP  275 (429)
T ss_pred             CchHHhhhhhhcccCc
Confidence            9999999999997655

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.97  E-value=4.1e-30  Score=256.76  Aligned_cols=168  Identities=30%  Similarity=0.520  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.+|.+||+|||+++.............||+.|+|||++.+  
T Consensus        93 ~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  170 (321)
T cd05603          93 FLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRK--  170 (321)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcC--
Confidence            468889999999999999999999999999999999999999999999998754332233445679999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+|||||++|+|++|..||...+.......+...+   ...+...+..+.++|.+||..+|.+||++   
T Consensus       171 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  244 (321)
T cd05603         171 ---EPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKP---LQLPGGKTVAACDLLVGLLHKDQRRRLGAKAD  244 (321)
T ss_pred             ---CCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCC---CCCCCCCCHHHHHHHHHHccCCHhhcCCCCCC
Confidence               568899999999999999999999998887666555555432   22345678999999999999999999875   


Q ss_pred             -HHHhcCcCCCCCCCCcccc
Q psy9090         158 -SELLEHPFITSLPENDLHL  176 (488)
Q Consensus       158 -~ell~hp~f~~~~~~~~~~  176 (488)
                       .++++||||..+.|..+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~  264 (321)
T cd05603         245 FLEIKNHVFFSPINWDDLYH  264 (321)
T ss_pred             HHHHhCCCCcCCCCHHHHhc
Confidence             5999999999888765543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.97  E-value=6.5e-30  Score=250.77  Aligned_cols=160  Identities=29%  Similarity=0.499  Sum_probs=131.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++...... .......||+.|+|||++.+  
T Consensus       105 ~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  181 (288)
T cd07863         105 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQ-MALTPVVVTLWYRAPEVLLQ--  181 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccCc-ccCCCccccccccCchHhhC--
Confidence            578899999999999999999999999999999999999999999999998765432 22334578999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC----CC--------C---------CCCCCcC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP----PG--------L---------YRASNWS  136 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~----~~--------~---------~~~~~~s  136 (488)
                         ..++.++||||+||++|+|++|.+||.+........++...   +.    +.        .         .....++
T Consensus       182 ---~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (288)
T cd07863         182 ---STYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIE  258 (288)
T ss_pred             ---CCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcC
Confidence               56889999999999999999999999877665554444321   00    00        0         0112457


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..+.++|.+||..||++|||+.+++.||||
T Consensus       259 ~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         259 ESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             HHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=2e-30  Score=258.70  Aligned_cols=167  Identities=28%  Similarity=0.518  Sum_probs=142.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+  
T Consensus        95 l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~--  172 (318)
T cd05582          95 FTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNR--  172 (318)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcC--
Confidence            578999999999999999999999999999999999999999999999998765443233445679999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..++.++|+|||||++|+|++|+.||...........+.....   ..+..+++.+.+||++||..||.+||+    
T Consensus       173 ---~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~  246 (318)
T cd05582         173 ---RGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKL---GMPQFLSPEAQSLLRALFKRNPANRLGAGPD  246 (318)
T ss_pred             ---CCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHhhcCHhHcCCCCCC
Confidence               5678899999999999999999999988877666666554322   234567999999999999999999999    


Q ss_pred             -HHHHhcCcCCCCCCCCccc
Q psy9090         157 -MSELLEHPFITSLPENDLH  175 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~  175 (488)
                       +.+++.||||..+.|..+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~  266 (318)
T cd05582         247 GVEEIKRHPFFSTIDWNKLY  266 (318)
T ss_pred             CHHHHhCCCCcCCCCHHHHH
Confidence             7889999999998776543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5e-30  Score=259.00  Aligned_cols=169  Identities=27%  Similarity=0.505  Sum_probs=140.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----------------------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----------------------   58 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......                      
T Consensus        98 l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (350)
T cd05573          98 FPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRR  177 (350)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccc
Confidence            5788999999999999999999999999999999999999999999999987654332                      


Q ss_pred             -------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CCCCC
Q psy9090          59 -------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PPGLY  130 (488)
Q Consensus        59 -------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~  130 (488)
                             .......||+.|+|||++.+     ..++.++|||||||++|+|++|+.||..........++.... ....+
T Consensus       178 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p  252 (350)
T cd05573         178 RDHKQRRVRANSTVGTPDYIAPEVLRG-----TPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFP  252 (350)
T ss_pred             cccccccccccccccCccccCHHHHcC-----CCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCC
Confidence                   12334579999999999976     578899999999999999999999998887666555555411 11222


Q ss_pred             CCCCcCHHHHHHHHHhcccCCCCCCC-HHHHhcCcCCCCCCCCccc
Q psy9090         131 RASNWSQHYVDFIAECLEKNPEHRPY-MSELLEHPFITSLPENDLH  175 (488)
Q Consensus       131 ~~~~~s~~~~~li~~~L~~dP~~Rps-~~ell~hp~f~~~~~~~~~  175 (488)
                      ....+++.+.+||.+||. +|.+||+ ++++++||||+.++|+...
T Consensus       253 ~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~~~~~~  297 (350)
T cd05573         253 PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGIDWENLR  297 (350)
T ss_pred             CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCCHHHHh
Confidence            233479999999999997 9999999 9999999999998886543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.96  E-value=9.1e-30  Score=249.72  Aligned_cols=161  Identities=24%  Similarity=0.509  Sum_probs=130.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......||+.|+|||++.+ 
T Consensus        97 ~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  175 (287)
T cd07848          97 VPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLG-  175 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcC-
Confidence            4688899999999999999999999999999999999999999999999997654321 12234578999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CC-------------------CCCCC-------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PP-------------------PGLYR-------  131 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~-------------------~~~~~-------  131 (488)
                          ..++.++|+||+||++|+|++|++||.+.........+...  +.                   +....       
T Consensus       176 ----~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (287)
T cd07848         176 ----APYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERR  251 (287)
T ss_pred             ----CCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHh
Confidence                56888999999999999999999999877654443332211  00                   00000       


Q ss_pred             -CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         132 -ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       132 -~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                       ...+|..+.+||++||..||++|||++++++||||
T Consensus       252 ~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         252 YLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             hhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence             11257889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=9e-30  Score=255.69  Aligned_cols=168  Identities=27%  Similarity=0.471  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......   ......||+.|+|||++.
T Consensus       100 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  179 (338)
T cd07859         100 LTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCG  179 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHh
Confidence            57889999999999999999999999999999999999999999999999875432211   123457899999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh--------------------------CCCCC--C
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--------------------------NPPPG--L  129 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~--------------------------~~~~~--~  129 (488)
                      +.   ...++.++|||||||++|+|++|++||.+.........+..                          ...+.  .
T Consensus       180 ~~---~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  256 (338)
T cd07859         180 SF---FSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFS  256 (338)
T ss_pred             cc---ccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchH
Confidence            41   14578899999999999999999999977654332211110                          00000  0


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ......++.+.++|.+||..||++|||++++++||||+.+..
T Consensus       257 ~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         257 QKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAK  298 (338)
T ss_pred             HhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCc
Confidence            011245788899999999999999999999999999987655

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0574|consensus

Probab=99.96  E-value=3e-31  Score=246.18  Aligned_cols=167  Identities=44%  Similarity=0.906  Sum_probs=157.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.++..+++.-+.||+|||...-+|||||..|||++.+|+.||+|||.+-.+........+.+|||.|||||++..  
T Consensus       126 L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~E--  203 (502)
T KOG0574|consen  126 LSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEE--  203 (502)
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHH--
Confidence            689999999999999999999999999999999999999999999999999888877777889999999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         -+|+.++||||||+...||..|++||.+-.+...++.+-.+++|.+..|..||.++.+++++||.++|++|.|+-++
T Consensus       204 ---IGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L  280 (502)
T KOG0574|consen  204 ---IGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRL  280 (502)
T ss_pred             ---hccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence               67999999999999999999999999999999999999889999998999999999999999999999999999999


Q ss_pred             hcCcCCCCCCCC
Q psy9090         161 LEHPFITSLPEN  172 (488)
Q Consensus       161 l~hp~f~~~~~~  172 (488)
                      ++|||+++.+.-
T Consensus       281 ~~H~FiknA~g~  292 (502)
T KOG0574|consen  281 CEHTFIKNAPGC  292 (502)
T ss_pred             hhhhhhcCCCcc
Confidence            999999986543

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=9.6e-30  Score=255.39  Aligned_cols=167  Identities=32%  Similarity=0.548  Sum_probs=139.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....   ......||+.|+|||++.+  
T Consensus        98 l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~--  172 (333)
T cd05600          98 LSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT---YANSVVGSPDYMAPEVLRG--  172 (333)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc---ccCCcccCccccChhHhcC--
Confidence            57889999999999999999999999999999999999999999999999876543   3345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC----CCC-CCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP----PGL-YRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~----~~~-~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                         ..++.++|||||||++|+|++|..||...........+.....    +.. .....+++++.+||.+||..+|.+||
T Consensus       173 ---~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~  249 (333)
T cd05600         173 ---KGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFG  249 (333)
T ss_pred             ---CCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcC
Confidence               5788999999999999999999999988776655544433211    111 01125689999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCCCccc
Q psy9090         156 YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~  175 (488)
                      +++++++||||..+++..+.
T Consensus       250 s~~~ll~h~~~~~~~~~~~~  269 (333)
T cd05600         250 SLEDIKNHPFFKEVDWNELR  269 (333)
T ss_pred             CHHHHHhCcccCCCCHHHHh
Confidence            99999999999998776543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.96  E-value=1.1e-29  Score=252.10  Aligned_cols=167  Identities=26%  Similarity=0.521  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++..............+++.|+|||++.+. 
T Consensus       101 ~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  179 (309)
T cd07872         101 MSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS-  179 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCC-
Confidence            4678899999999999999999999999999999999999999999999987654332333445688999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC------------------CC------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP------------------PG------LYRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~------------------~~------~~~~~  133 (488)
                         ..++.++|+||+||++|+|++|++||.+.+.......+.+.   +.                  +.      .....
T Consensus       180 ---~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (309)
T cd07872         180 ---SEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAP  256 (309)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhcc
Confidence               45788999999999999999999999877654443333221   00                  00      00112


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      .+++++++||.+||..||.+|||+.++++||||+....
T Consensus       257 ~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~~  294 (309)
T cd07872         257 RLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLGT  294 (309)
T ss_pred             CCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhccc
Confidence            46788999999999999999999999999999997653

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=1.4e-29  Score=257.78  Aligned_cols=173  Identities=24%  Similarity=0.393  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++........ ...+..||+.|+|||++...
T Consensus       139 ~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~  218 (370)
T cd05621         139 VPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQ  218 (370)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhcc
Confidence            47889999999999999999999999999999999999999999999999976543211 23456799999999999752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCC--CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEH--RPY  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~--Rps  156 (488)
                      . ....++.++|+||+||++|+|++|.+||.+........++..... ...+....++..+++++.+||..+|.+  |++
T Consensus       219 ~-~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~  297 (370)
T cd05621         219 G-GDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNG  297 (370)
T ss_pred             C-CCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCC
Confidence            1 113478899999999999999999999998877666666654322 222223456999999999999865544  889


Q ss_pred             HHHHhcCcCCCCCCCCcc
Q psy9090         157 MSELLEHPFITSLPENDL  174 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~  174 (488)
                      +.++++||||+...|...
T Consensus       298 ~~e~l~hp~~~~~~~~~~  315 (370)
T cd05621         298 VEEIKQHPFFKNDQWNWD  315 (370)
T ss_pred             HHHHhcCcccCCCCcChH
Confidence            999999999998666533

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0580|consensus

Probab=99.96  E-value=4.1e-30  Score=232.22  Aligned_cols=158  Identities=34%  Similarity=0.594  Sum_probs=141.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++|..++.+++|++.||.|||.++++||||||+|+|++..|.+|++|||.+....  .....+.+||..|.|||...+  
T Consensus       121 f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p--~~kR~tlcgt~dyl~pEmv~~--  196 (281)
T KOG0580|consen  121 FDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP--SNKRKTLCGTLDYLPPEMVEG--  196 (281)
T ss_pred             ccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecC--CCCceeeecccccCCHhhcCC--
Confidence            4678899999999999999999999999999999999999999999999987654  356678899999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++..+|+|++|++.||++.|.+||......+...++.+-   ....|..++..+.|||.+||..+|.+|.+..++
T Consensus       197 ---~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~---~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v  270 (281)
T KOG0580|consen  197 ---RGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKV---DLKFPSTISGGAADLISRLLVKNPIERLALTEV  270 (281)
T ss_pred             ---CCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHc---cccCCcccChhHHHHHHHHhccCccccccHHHH
Confidence               67899999999999999999999999988866666666543   233457889999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      +.|||+..
T Consensus       271 ~~hpwI~a  278 (281)
T KOG0580|consen  271 MDHPWIVA  278 (281)
T ss_pred             hhhHHHHh
Confidence            99999864

>KOG0603|consensus

Probab=99.96  E-value=7.5e-30  Score=259.35  Aligned_cols=153  Identities=25%  Similarity=0.423  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE-ccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccC
Q psy9090           4 QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKE   82 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl-~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~   82 (488)
                      .++..|++||+.|+.|||++|+|||||||+|||+ +..|+++|+|||.++.....   ..+.+-|..|.|||++..    
T Consensus       415 ~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~---~~tp~~t~~y~APEvl~~----  487 (612)
T KOG0603|consen  415 SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS---CDTPALTLQYVAPEVLAI----  487 (612)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh---hcccchhhcccChhhhcc----
Confidence            4677899999999999999999999999999999 69999999999999876543   445567889999999974    


Q ss_pred             CCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy9090          83 VDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus        83 ~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  162 (488)
                       ..|+++|||||||++||+|++|+.||........+...+..+..    ...+|..+++||++||+.||.+||++.+++.
T Consensus       488 -~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~----s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  488 -QEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKF----SECVSDEAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             -CCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCcc----ccccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence             78999999999999999999999999766544333333332211    2677999999999999999999999999999


Q ss_pred             CcCCCC
Q psy9090         163 HPFITS  168 (488)
Q Consensus       163 hp~f~~  168 (488)
                      ||||.+
T Consensus       563 h~w~~~  568 (612)
T KOG0603|consen  563 HPWFLS  568 (612)
T ss_pred             Ccchhc
Confidence            999933

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=6e-30  Score=256.49  Aligned_cols=174  Identities=25%  Similarity=0.455  Sum_probs=141.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........ ......||+.|+|||++...
T Consensus        99 l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  178 (330)
T cd05601          99 FDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTM  178 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccc
Confidence            57889999999999999999999999999999999999999999999999976543211 22334789999999998642


Q ss_pred             ccC-CCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          80 HKE-VDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        80 ~~~-~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      ... ...++.++|||||||++|+|++|..||..........++..... ...+....+++.+.+||.+||. +|.+|||+
T Consensus       179 ~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~  257 (330)
T cd05601         179 NGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGY  257 (330)
T ss_pred             cccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCH
Confidence            221 25678899999999999999999999988776666666554322 1222334679999999999997 99999999


Q ss_pred             HHHhcCcCCCCCCCCccc
Q psy9090         158 SELLEHPFITSLPENDLH  175 (488)
Q Consensus       158 ~ell~hp~f~~~~~~~~~  175 (488)
                      ++++.||||..++|..+.
T Consensus       258 ~~l~~h~~~~~~~~~~~~  275 (330)
T cd05601         258 EGLCCHPFFSKIDWNNIR  275 (330)
T ss_pred             HHHhCCCCcCCCCHHHHh
Confidence            999999999998876543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=6.7e-30  Score=259.37  Aligned_cols=170  Identities=26%  Similarity=0.460  Sum_probs=138.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----------------------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----------------------   58 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.+|.++|+|||+++......                      
T Consensus        98 l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (360)
T cd05627          98 LSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMN  177 (360)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccc
Confidence            5788999999999999999999999999999999999999999999999986432110                      


Q ss_pred             -------------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC
Q psy9090          59 -------------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP  125 (488)
Q Consensus        59 -------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~  125 (488)
                                   ......+||+.|+|||++.+     ..++.++|+|||||++|+|++|.+||.+..+.....++....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~-----~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~~  252 (360)
T cd05627         178 SKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQ-----TGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWK  252 (360)
T ss_pred             cccccccccccccccccccCCCccccCHHHHcC-----CCCCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcCC
Confidence                         01124579999999999976     678899999999999999999999999888766665555322


Q ss_pred             C-CCCCCCCCcCHHHHHHHHHhcccCCCCCC---CHHHHhcCcCCCCCCCCcccc
Q psy9090         126 P-PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPENDLHL  176 (488)
Q Consensus       126 ~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---s~~ell~hp~f~~~~~~~~~~  176 (488)
                      . ...+....+++.+++||.+|+ .+|.+|+   ++.++++||||..++|..+..
T Consensus       253 ~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~~~~~  306 (360)
T cd05627         253 ETLVFPPEVPISEKAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGVDWGHIRE  306 (360)
T ss_pred             CceecCCCCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCCCHHHHhc
Confidence            1 122223347899999999987 4999998   489999999999999876543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-29  Score=257.84  Aligned_cols=168  Identities=27%  Similarity=0.472  Sum_probs=138.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---------------------   59 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---------------------   59 (488)
                      |++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||+++.......                     
T Consensus        98 l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (364)
T cd05599          98 FTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISK  177 (364)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999865421100                     


Q ss_pred             -----------------ccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHH
Q psy9090          60 -----------------KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV  122 (488)
Q Consensus        60 -----------------~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~  122 (488)
                                       .....+||+.|+|||++..     ..++.++|||||||++|+|++|.+||.+.........+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~  252 (364)
T cd05599         178 PMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQ-----TGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKII  252 (364)
T ss_pred             cccccccccchhhcccccccccccCccccCHHHHcC-----CCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHH
Confidence                             0113469999999999875     568899999999999999999999999887766655555


Q ss_pred             hCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCCC---HHHHhcCcCCCCCCCCcc
Q psy9090         123 RNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRPY---MSELLEHPFITSLPENDL  174 (488)
Q Consensus       123 ~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps---~~ell~hp~f~~~~~~~~  174 (488)
                      .... ...+....+++.+++||.+||. +|.+|++   +.++++||||+..+|..+
T Consensus       253 ~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~~~~~~  307 (364)
T cd05599         253 NWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVDWEHI  307 (364)
T ss_pred             cCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCCCHHHH
Confidence            4221 1222233578999999999996 8999997   999999999999887643

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=1.5e-29  Score=256.66  Aligned_cols=162  Identities=27%  Similarity=0.522  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       120 ~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~~--  196 (359)
T cd07876         120 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTN-FMMTPYVVTRYYRAPEVILG--  196 (359)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccC-ccCCCCcccCCCCCchhccC--
Confidence            467889999999999999999999999999999999999999999999998754332 22344578999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---------------------CCCCCC---------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---------------------PPPGLY---------  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---------------------~~~~~~---------  130 (488)
                         ..++.++|||||||++|+|++|+.||.+.+.......+...                     ..+...         
T Consensus       197 ---~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (359)
T cd07876         197 ---MGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFP  273 (359)
T ss_pred             ---CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhcc
Confidence               56889999999999999999999999876544332222110                     000000         


Q ss_pred             ---------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         131 ---------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       131 ---------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                               .....++.+++||.+||..||++|||+.++++||||..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~  320 (359)
T cd07876         274 DWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITV  320 (359)
T ss_pred             ccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence                     01123577899999999999999999999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=1.9e-29  Score=255.54  Aligned_cols=163  Identities=25%  Similarity=0.469  Sum_probs=130.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       116 l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~--  192 (355)
T cd07874         116 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG--  192 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCc-cccCCccccCCccCHHHHcC--
Confidence            467889999999999999999999999999999999999999999999999765432 22345578999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---------------------CC-----------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---------------------PG-----------  128 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---------------------~~-----------  128 (488)
                         ..++.++|+|||||++|+|++|+.||.+..........+....                     +.           
T Consensus       193 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (355)
T cd07874         193 ---MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFP  269 (355)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhcc
Confidence               5688999999999999999999999987664443332221100                     00           


Q ss_pred             -------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         129 -------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       129 -------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                             .......+..+++||.+||..||++|||+.++++||||...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         270 DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             ccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence                   00011235678999999999999999999999999999743

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=2.2e-29  Score=250.75  Aligned_cols=162  Identities=26%  Similarity=0.472  Sum_probs=123.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE----ccCCcEEEEecCCcccccccc---CccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl----~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+++......   .......||+.|+||
T Consensus       105 l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aP  184 (317)
T cd07868         105 LPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP  184 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCC
Confidence            4678899999999999999999999999999999999    456789999999997654321   122356789999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---------HHHHHHHHh---CCC----------CC---
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---------TRALFQIVR---NPP----------PG---  128 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---------~~~~~~~~~---~~~----------~~---  128 (488)
                      |++.+.    ..++.++|+||+||++|+|++|.+||.....         ...+..+..   .+.          +.   
T Consensus       185 E~~~~~----~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (317)
T cd07868         185 ELLLGA----RHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHST  260 (317)
T ss_pred             HHHcCC----CCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhh
Confidence            998752    4578899999999999999999999964331         111111111   000          00   


Q ss_pred             --------CC-----------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         129 --------LY-----------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       129 --------~~-----------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                              ..           .....+..+.+||.+||..||.+|||++++|+||||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         261 LMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             hhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                    00           001224678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.96  E-value=4e-29  Score=244.65  Aligned_cols=169  Identities=41%  Similarity=0.862  Sum_probs=141.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||+.|++||||||+||+++.++.++|+|||++..............+++.|+|||++....
T Consensus       100 l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  179 (282)
T cd06643         100 LTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCET  179 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccC
Confidence            47889999999999999999999999999999999999999999999999876543323334557899999999986432


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+||+||++|+|++|.+||...........+.....+....+..++..++++|.+||..+|.+||++.++
T Consensus       180 ~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  259 (282)
T cd06643         180 SKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQL  259 (282)
T ss_pred             CCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            22356788999999999999999999999887766666666554444444556789999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||+..
T Consensus       260 l~~~~~~~~  268 (282)
T cd06643         260 LQHPFVTVN  268 (282)
T ss_pred             hcCCCEecc
Confidence            999999864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.96  E-value=1.7e-29  Score=258.57  Aligned_cols=167  Identities=26%  Similarity=0.505  Sum_probs=136.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-----------------------   57 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-----------------------   57 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||++......                       
T Consensus        98 ~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (382)
T cd05625          98 FPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEW  177 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccc
Confidence            478899999999999999999999999999999999999999999999997532100                       


Q ss_pred             ------------------------cCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC
Q psy9090          58 ------------------------FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH  113 (488)
Q Consensus        58 ------------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~  113 (488)
                                              .......+||+.|+|||++.+     ..|+.++|||||||++|+|++|++||.+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~~~~~DiwSlGvil~elltG~~Pf~~~~  252 (382)
T cd05625         178 GDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLR-----TGYTQLCDWWSVGVILYEMLVGQPPFLAQT  252 (382)
T ss_pred             cccccccccccccchhhhhccccccccccccccCcccCCHHHhcC-----CCCCCeeeEEechHHHHHHHhCCCCCCCCC
Confidence                                    000123579999999999976     578899999999999999999999999887


Q ss_pred             hHHHHHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCCCCC---HHHHhcCcCCCCCCCCc
Q psy9090         114 PTRALFQIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEHRPY---MSELLEHPFITSLPEND  173 (488)
Q Consensus       114 ~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps---~~ell~hp~f~~~~~~~  173 (488)
                      +......+.... ....+....+++++.++|.+|+ .+|.+|++   ++++++||||+.+++..
T Consensus       253 ~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~~  315 (382)
T cd05625         253 PLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTIDFSS  315 (382)
T ss_pred             HHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcChHH
Confidence            766555555422 2222334567999999999986 59999997   99999999999987764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=3.7e-29  Score=254.30  Aligned_cols=162  Identities=23%  Similarity=0.464  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       123 ~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-~~~~~~~~t~~y~aPE~~~~--  199 (364)
T cd07875         123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG--  199 (364)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCC-CcccCCcccCCcCCHHHHhC--
Confidence            467889999999999999999999999999999999999999999999999765432 22345578999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC---------------------CCC---------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP---------------------GLY---------  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~---------------------~~~---------  130 (488)
                         ..++.++|||||||++|+|++|+.||.+.+.......++.....                     ...         
T Consensus       200 ---~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (364)
T cd07875         200 ---MGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFP  276 (364)
T ss_pred             ---CCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCc
Confidence               56889999999999999999999999887665554444321100                     000         


Q ss_pred             ---------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         131 ---------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       131 ---------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                               .....+..+++||.+||..||.+|||+.++|+||||..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~  323 (364)
T cd07875         277 DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV  323 (364)
T ss_pred             cccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence                     00112467899999999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.1e-29  Score=244.71  Aligned_cols=166  Identities=59%  Similarity=1.110  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++..............|++.|+|||++....
T Consensus       110 ~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  189 (275)
T cd06608         110 LKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDE  189 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccc
Confidence            46788999999999999999999999999999999999999999999999876544333344567899999999986543


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+|||||++|+|++|.+||..........++.....+....+..++..+++||.+||..||++|||+.++
T Consensus       190 ~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~l  269 (275)
T cd06608         190 QPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEEL  269 (275)
T ss_pred             cccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHH
Confidence            33456788999999999999999999999877766667777666555555555688999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++|||+
T Consensus       270 l~~~~~  275 (275)
T cd06608         270 LEHPFI  275 (275)
T ss_pred             hcCCCC
Confidence            999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.96  E-value=4.5e-29  Score=245.62  Aligned_cols=173  Identities=40%  Similarity=0.873  Sum_probs=144.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.+|.|||++|++||||||+||+++.++.++|+|||++..............+++.|+|||++.+..
T Consensus       107 l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  186 (292)
T cd06644         107 LTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCET  186 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeecccc
Confidence            47889999999999999999999999999999999999999999999999875443323334556889999999986432


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+|||||++|+|++|.+||..........++.....+....+..++.++.++|.+||..+|++||+++++
T Consensus       187 ~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  266 (292)
T cd06644         187 MKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQL  266 (292)
T ss_pred             ccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHH
Confidence            22255788999999999999999999999877766655555554444444566788999999999999999999999999


Q ss_pred             hcCcCCCCCCCCc
Q psy9090         161 LEHPFITSLPEND  173 (488)
Q Consensus       161 l~hp~f~~~~~~~  173 (488)
                      ++||||..+.++.
T Consensus       267 l~~~~~~~~~~~~  279 (292)
T cd06644         267 LEHPFVSSVTSNR  279 (292)
T ss_pred             hcCccccccccch
Confidence            9999999887764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PTZ00284 protein kinase; Provisional

Probab=99.96  E-value=1.3e-29  Score=266.07  Aligned_cols=163  Identities=20%  Similarity=0.377  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCC----------------cEEEEecCCccccccccCcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDG----------------EVKIVDFGLSRETANTFDKKKT   63 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~----------------~vkL~Dfg~a~~~~~~~~~~~~   63 (488)
                      |++..++.|+.||+.||+|||+ .|||||||||+|||++.++                .+||+|||.+....   .....
T Consensus       228 l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~---~~~~~  304 (467)
T PTZ00284        228 FSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER---HSRTA  304 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCc---ccccc
Confidence            5788899999999999999998 5999999999999998765                49999999875432   22345


Q ss_pred             ccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCCC-------------
Q psy9090          64 FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPG-------------  128 (488)
Q Consensus        64 ~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~~-------------  128 (488)
                      .+||+.|+|||++.+     ..|+.++|||||||++|+|++|++||.+......+..+...  ..+.             
T Consensus       305 ~~gt~~Y~APE~~~~-----~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~  379 (467)
T PTZ00284        305 IVSTRHYRSPEVVLG-----LGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARL  379 (467)
T ss_pred             ccCCccccCcHHhhc-----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHH
Confidence            689999999999976     67899999999999999999999999876654433322211  0000             


Q ss_pred             ----------CCCC--------------CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         129 ----------LYRA--------------SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       129 ----------~~~~--------------~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                                ...+              ...++.+.+||.+||.+||.+|||++++|+||||.....
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~~  446 (467)
T PTZ00284        380 LYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYYP  446 (467)
T ss_pred             HhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccCC
Confidence                      0000              011456789999999999999999999999999987533

>KOG0589|consensus

Probab=99.96  E-value=9.1e-30  Score=253.69  Aligned_cols=161  Identities=34%  Similarity=0.569  Sum_probs=149.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++|+.+..|+.||+.|+.|||+++|+|||||+.||+++.++.|||+|||+++..........+.+|||.|++||++.+  
T Consensus       103 f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d--  180 (426)
T KOG0589|consen  103 FPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSD--  180 (426)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCC--
Confidence            589999999999999999999999999999999999999999999999999998876557788999999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         .+|+.++|||||||++|||++-+++|.+.+......++.+....+  .+..++.+++.+|+.||..+|..||++.++
T Consensus       181 ---~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~P--lp~~ys~el~~lv~~~l~~~P~~RPsa~~L  255 (426)
T KOG0589|consen  181 ---IPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSP--LPSMYSSELRSLVKSMLRKNPEHRPSALEL  255 (426)
T ss_pred             ---CCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCC--CCccccHHHHHHHHHHhhcCCccCCCHHHH
Confidence               889999999999999999999999999999999999998876443  467889999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |.+|....
T Consensus       256 L~~P~l~~  263 (426)
T KOG0589|consen  256 LRRPHLLR  263 (426)
T ss_pred             hhChhhhh
Confidence            99988764

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.3e-29  Score=247.00  Aligned_cols=175  Identities=26%  Similarity=0.450  Sum_probs=141.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||++|++||||||+||+++.++.++|+|||++...... .......|++.|+|||++.+  
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  175 (285)
T cd05605          99 FDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG-ETIRGRVGTVGYMAPEVVKN--  175 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCC-CccccccCCCCccCcHHhcC--
Confidence            578899999999999999999999999999999999999999999999998765332 22234578999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHH---HhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC--
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI---VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP--  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp--  155 (488)
                         ..++.++|+||+||++|+|++|..||.+.........+   +.....  ..+..++..+.+||.+||..||++||  
T Consensus       176 ---~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05605         176 ---ERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQE--EYSEKFSEAARSICRQLLTKDPGFRLGC  250 (285)
T ss_pred             ---CCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhccc--ccCcccCHHHHHHHHHHccCCHHHhcCC
Confidence               56888999999999999999999999876543322222   222111  12345789999999999999999999  


Q ss_pred             ---CHHHHhcCcCCCCCCCCccccccccccc
Q psy9090         156 ---YMSELLEHPFITSLPENDLHLSTVNCQY  183 (488)
Q Consensus       156 ---s~~ell~hp~f~~~~~~~~~~~~~~~~~  183 (488)
                         +++++++||||...+|..+......+++
T Consensus       251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  281 (285)
T cd05605         251 RGEGAEEVKAHPFFRTANFKRLEAGMLEPPF  281 (285)
T ss_pred             CCCCHHHHhcCcCccCCCHHHHhhCCCCCCC
Confidence               8999999999999888766544444443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=3.3e-29  Score=252.48  Aligned_cols=164  Identities=29%  Similarity=0.561  Sum_probs=132.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....   ......||+.|+|||++.+. 
T Consensus       115 l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~---~~~~~~~t~~y~aPE~~~~~-  190 (343)
T cd07878         115 LSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD---EMTGYVATRWYRAPEIMLNW-  190 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCC---CcCCccccccccCchHhcCC-
Confidence            57889999999999999999999999999999999999999999999999876543   23455789999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC-------------------CCCCC------C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP-------------------PGLYR------A  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~-------------------~~~~~------~  132 (488)
                         ..++.++|||||||++|+|++|..||.+......+..+...   +.                   +....      .
T Consensus       191 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T cd07878         191 ---MHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIF  267 (343)
T ss_pred             ---ccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhc
Confidence               45788999999999999999999999876654444333211   00                   00000      1


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ...++.+.+||.+||..||.+|||+.++++||||.....
T Consensus       268 ~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~~  306 (343)
T cd07878         268 RGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYHD  306 (343)
T ss_pred             cCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccCC
Confidence            234667899999999999999999999999999987543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=2.7e-29  Score=245.49  Aligned_cols=168  Identities=24%  Similarity=0.438  Sum_probs=134.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.++|+|||++...... .......|++.|+|||++.+  
T Consensus        92 ~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  168 (277)
T cd05607          92 LEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG-KTITQRAGTNGYMAPEILKE--  168 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCC-ceeeccCCCCCccCHHHHcc--
Confidence            356778899999999999999999999999999999999999999999998765432 22234568999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH----HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT----RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                         ..++.++|+||+||++|+|++|..||......    ........... . .....+++++++||.+||+.||++||+
T Consensus       169 ---~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~li~~~L~~~P~~R~~  243 (277)
T cd05607         169 ---EPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEV-K-FEHQNFTEESKDICRLFLAKKPEDRLG  243 (277)
T ss_pred             ---CCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhcccc-c-cccccCCHHHHHHHHHHhccCHhhCCC
Confidence               55889999999999999999999999764322    11222222111 1 122467999999999999999999999


Q ss_pred             H----HHHhcCcCCCCCCCCcccc
Q psy9090         157 M----SELLEHPFITSLPENDLHL  176 (488)
Q Consensus       157 ~----~ell~hp~f~~~~~~~~~~  176 (488)
                      +    ++++.||||+.+++..+..
T Consensus       244 ~~~~~~~~~~h~~f~~~~~~~~~~  267 (277)
T cd05607         244 SREKNDDPRKHEFFKTINFPRLEA  267 (277)
T ss_pred             CccchhhhhcChhhcCCCHHHHhc
Confidence            9    6788999999987765543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=3.9e-29  Score=254.67  Aligned_cols=172  Identities=22%  Similarity=0.353  Sum_probs=138.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....... ......+||+.|+|||++...
T Consensus       139 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  218 (371)
T cd05622         139 VPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQ  218 (371)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhcc
Confidence            4788899999999999999999999999999999999999999999999987654321 123456799999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCC--CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEH--RPY  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~--Rps  156 (488)
                      .. ...++.++|||||||++|+|++|.+||.+.+......++..... ...+....++..++++|.+||..+|.+  |++
T Consensus       219 ~~-~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~  297 (371)
T cd05622         219 GG-DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNG  297 (371)
T ss_pred             CC-CccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCC
Confidence            11 13478899999999999999999999998877666666654322 223334568999999999999844433  789


Q ss_pred             HHHHhcCcCCCCCCCCc
Q psy9090         157 MSELLEHPFITSLPEND  173 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~  173 (488)
                      ++++++||||++.++..
T Consensus       298 ~~ei~~h~~~~~~~~~~  314 (371)
T cd05622         298 VEEIKRHLFFKNDQWAW  314 (371)
T ss_pred             HHHHhcCcccCCCChhH
Confidence            99999999999866543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=3.6e-29  Score=256.02  Aligned_cols=168  Identities=26%  Similarity=0.468  Sum_probs=135.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----------------------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----------------------   58 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                      
T Consensus        98 ~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (381)
T cd05626          98 FPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLW  177 (381)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCccccc
Confidence            5788999999999999999999999999999999999999999999999875321000                      


Q ss_pred             -------------------------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC
Q psy9090          59 -------------------------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH  113 (488)
Q Consensus        59 -------------------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~  113 (488)
                                               ....+.+||+.|+|||++.+     ..++.++|||||||++|+|++|.+||....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~-----~~~~~~~DiwSlG~il~elltG~~Pf~~~~  252 (381)
T cd05626         178 DDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLR-----KGYTQLCDWWSVGVILFEMLVGQPPFLAPT  252 (381)
T ss_pred             ccccccccccccchhhccccccccccccccccCCccccCHHHHcC-----CCCCCccceeehhhHHHHHHhCCCCCcCCC
Confidence                                     00123579999999999975     568899999999999999999999998877


Q ss_pred             hHHHHHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcc--cCCCCCCCHHHHhcCcCCCCCCCCc
Q psy9090         114 PTRALFQIVRNP-PPGLYRASNWSQHYVDFIAECLE--KNPEHRPYMSELLEHPFITSLPEND  173 (488)
Q Consensus       114 ~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~--~dP~~Rps~~ell~hp~f~~~~~~~  173 (488)
                      .......+.... ....+....+++++++||.+|+.  .+|..|+++.++++||||+.+.|..
T Consensus       253 ~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~~~~  315 (381)
T cd05626         253 PTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVDFSS  315 (381)
T ss_pred             HHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCChhH
Confidence            665555554321 22233334679999999999664  4555699999999999999988764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=4.3e-29  Score=255.84  Aligned_cols=166  Identities=24%  Similarity=0.439  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-cCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...... ........||+.|+|||++.+ 
T Consensus       179 l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-  257 (391)
T PHA03212        179 IAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLAR-  257 (391)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcC-
Confidence            467889999999999999999999999999999999999999999999998643221 122345679999999999975 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-------hHHHHHHHHh--------------------------CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-------PTRALFQIVR--------------------------NPP  126 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-------~~~~~~~~~~--------------------------~~~  126 (488)
                          ..|+.++|||||||++|+|++|..||....       ....+..++.                          ...
T Consensus       258 ----~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  333 (391)
T PHA03212        258 ----DPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSS  333 (391)
T ss_pred             ----CCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccC
Confidence                568999999999999999999998875321       1111111111                          000


Q ss_pred             C-CCCC-----CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         127 P-GLYR-----ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       127 ~-~~~~-----~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      . +...     ....+.++.+||.+||..||.+|||++++|+||||..++.
T Consensus       334 ~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~  384 (391)
T PHA03212        334 RKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIPD  384 (391)
T ss_pred             CCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCCC
Confidence            0 0000     0123567899999999999999999999999999987643

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.96  E-value=5.2e-29  Score=242.17  Aligned_cols=165  Identities=49%  Similarity=0.978  Sum_probs=135.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||+|||+++|+||||||+||+++.++.++|+|||++..............|++.|+|||++.+..
T Consensus       108 l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~  187 (272)
T cd06637         108 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE  187 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhcccc
Confidence            47888999999999999999999999999999999999999999999999876543323344567899999999986532


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+||+||++|+|++|..||................... .....++..+.+|+.+||..+|.+|||+.++
T Consensus       188 ~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i  266 (272)
T cd06637         188 NPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPR-LKSKKWSKKFQSFIESCLVKNHSQRPTTEQL  266 (272)
T ss_pred             CcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCC-CCCCCcCHHHHHHHHHHcCCChhhCCCHHHH
Confidence            223468889999999999999999999998766555444443332222 2344678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      +.||||
T Consensus       267 l~~~~~  272 (272)
T cd06637         267 MKHPFI  272 (272)
T ss_pred             hhCCCC
Confidence            999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0596|consensus

Probab=99.96  E-value=2.5e-29  Score=250.33  Aligned_cols=164  Identities=25%  Similarity=0.497  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcccccC
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRCGHKE   82 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~~~~~   82 (488)
                      .++.|..||++++.++|++||||.||||.|+|+- .|.+||+|||.|........  ...+.+||+.||+||.+......
T Consensus       461 ~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~  539 (677)
T KOG0596|consen  461 FLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSS  539 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhcccc
Confidence            6889999999999999999999999999999987 48999999999987654322  33566899999999998763222


Q ss_pred             ------CCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCC-cCHHHHHHHHHhcccCCCCCC
Q psy9090          83 ------VDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASN-WSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        83 ------~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~li~~~L~~dP~~Rp  155 (488)
                            .-..++++||||||||||+|+.|++||............+..+......+.- -..++.++++.||..||.+||
T Consensus       540 ~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~  619 (677)
T KOG0596|consen  540 RENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRW  619 (677)
T ss_pred             ccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCC
Confidence                  2236789999999999999999999997644222222222333221111111 123389999999999999999


Q ss_pred             CHHHHhcCcCCCCC
Q psy9090         156 YMSELLEHPFITSL  169 (488)
Q Consensus       156 s~~ell~hp~f~~~  169 (488)
                      |+.++|+|||....
T Consensus       620 si~eLLqhpFl~~~  633 (677)
T KOG0596|consen  620 SIPELLQHPFLQIQ  633 (677)
T ss_pred             CcHHHhcCcccccc
Confidence            99999999999764

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5.5e-29  Score=243.25  Aligned_cols=170  Identities=42%  Similarity=0.914  Sum_probs=143.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.|++.||.|||++||+|+||||+||+++.++.++|+|||++..............+++.|+|||.+....
T Consensus       100 l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  179 (280)
T cd06611         100 LTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACET  179 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcc
Confidence            57889999999999999999999999999999999999999999999998876544333344567899999999986432


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+||+|+++|+|++|.+||..........++.....+....+..++..+.++|.+||..+|.+||++.++
T Consensus       180 ~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  259 (280)
T cd06611         180 FKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAEL  259 (280)
T ss_pred             cCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHH
Confidence            22356788999999999999999999999888776666666655555555566789999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      ++||||....
T Consensus       260 l~~~~~~~~~  269 (280)
T cd06611         260 LKHPFVSDQS  269 (280)
T ss_pred             hcChhhcccc
Confidence            9999998753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0611|consensus

Probab=99.96  E-value=2.2e-29  Score=242.04  Aligned_cols=157  Identities=32%  Similarity=0.551  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++++++||++|+.|||+++++|||||.+|||++.|+.+||+|||++..+... ....++||+|-|.+||++.+  
T Consensus       150 LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~-kfLqTFCGSPLYASPEIvNG--  226 (668)
T KOG0611|consen  150 LSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADK-KFLQTFCGSPLYASPEIVNG--  226 (668)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccc-cHHHHhcCCcccCCccccCC--
Confidence            689999999999999999999999999999999999999999999999999776554 45678999999999999987  


Q ss_pred             cCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         .+| ++.+|.|||||+||.|+.|..||.+.+......+|.++..    ..+.-+..+.-||+.||..||++|.|+.+
T Consensus       227 ---~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaY----rEP~~PSdA~gLIRwmLmVNP~RRATieD  299 (668)
T KOG0611|consen  227 ---TPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAY----REPETPSDASGLIRWMLMVNPERRATIED  299 (668)
T ss_pred             ---CCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccc----cCCCCCchHHHHHHHHHhcCcccchhHHH
Confidence               555 5789999999999999999999999988877777776532    23344777889999999999999999999


Q ss_pred             HhcCcCCC
Q psy9090         160 LLEHPFIT  167 (488)
Q Consensus       160 ll~hp~f~  167 (488)
                      +..|=|..
T Consensus       300 iAsHWWvN  307 (668)
T KOG0611|consen  300 IASHWWVN  307 (668)
T ss_pred             Hhhhheee
Confidence            99998874

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.96  E-value=9.6e-29  Score=243.05  Aligned_cols=167  Identities=50%  Similarity=0.955  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++..............|++.|+|||++....
T Consensus       125 ~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  204 (291)
T cd06639         125 LDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQ  204 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCC
Confidence            46788999999999999999999999999999999999999999999999876543322233456889999999986532


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+||+||++|+|++|++||...........+.+...+....+..++..+.++|.+||..+|++||++.++
T Consensus       205 ~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~i  284 (291)
T cd06639         205 QYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHL  284 (291)
T ss_pred             CcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHH
Confidence            22234688999999999999999999999887766666666655555544556678899999999999999999999999


Q ss_pred             hcCcCCC
Q psy9090         161 LEHPFIT  167 (488)
Q Consensus       161 l~hp~f~  167 (488)
                      ++||||+
T Consensus       285 l~~~~~~  291 (291)
T cd06639         285 LEHPFIK  291 (291)
T ss_pred             hcCcccC
Confidence            9999984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.7e-29  Score=255.50  Aligned_cols=168  Identities=28%  Similarity=0.461  Sum_probs=134.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---------------------   59 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---------------------   59 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......                     
T Consensus        98 ~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (377)
T cd05629          98 FSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRN  177 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccccccccccccccccccccccccccccc
Confidence            57889999999999999999999999999999999999999999999999863211000                     


Q ss_pred             --------------------------ccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC
Q psy9090          60 --------------------------KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH  113 (488)
Q Consensus        60 --------------------------~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~  113 (488)
                                                .....+||+.|+|||++.+     ..++.++|||||||++|+|++|.+||.+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlGvil~elltG~~Pf~~~~  252 (377)
T cd05629         178 SVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQ-----QGYGQECDWWSLGAIMFECLIGWPPFCSEN  252 (377)
T ss_pred             ccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHcc-----CCCCCceeeEecchhhhhhhcCCCCCCCCC
Confidence                                      0012469999999999975     568899999999999999999999998877


Q ss_pred             hHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCC---CCHHHHhcCcCCCCCCCCcc
Q psy9090         114 PTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHR---PYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       114 ~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~R---ps~~ell~hp~f~~~~~~~~  174 (488)
                      .......+..... ...+....++.++++||.+||. +|.+|   +++.+++.||||+.++|..+
T Consensus       253 ~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~~~~~~  316 (377)
T cd05629         253 SHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGVDWDTI  316 (377)
T ss_pred             HHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCCCHHHH
Confidence            6655555543221 1222223578999999999997 67765   59999999999998887654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.96  E-value=9.3e-29  Score=250.31  Aligned_cols=166  Identities=32%  Similarity=0.573  Sum_probs=131.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      ++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.....
T Consensus       166 ~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  245 (353)
T PLN00034        166 DEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLN  245 (353)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccc
Confidence            56788899999999999999999999999999999999999999999998766543333445679999999999854221


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      ....++.++|||||||++|+|++|+.||......   .....+.....+  ..+..++.++++||.+||..||++|||+.
T Consensus       246 ~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~P~~Rpt~~  323 (353)
T PLN00034        246 HGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPP--EAPATASREFRHFISCCLQREPAKRWSAM  323 (353)
T ss_pred             cCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCC--CCCCccCHHHHHHHHHHccCChhhCcCHH
Confidence            1233456899999999999999999999743221   112222222111  23456789999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      ++++||||...
T Consensus       324 ell~hp~~~~~  334 (353)
T PLN00034        324 QLLQHPFILRA  334 (353)
T ss_pred             HHhcCcccccC
Confidence            99999999874

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=5.1e-29  Score=262.59  Aligned_cols=162  Identities=29%  Similarity=0.521  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....  ........||+.|+|||++.+
T Consensus       140 l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~  219 (496)
T PTZ00283        140 FREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRR  219 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCC
Confidence            468889999999999999999999999999999999999999999999998765432  122345679999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                           ..|+.++|||||||++|+|++|+.||.+.........+.......  .+..+++++.+++.+||..+|.+||++.
T Consensus       220 -----~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~L~~dP~~RPs~~  292 (496)
T PTZ00283        220 -----KPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDP--LPPSISPEMQEIVTALLSSDPKRRPSSS  292 (496)
T ss_pred             -----CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHcccChhhCcCHH
Confidence                 568899999999999999999999999887766666665544332  3567899999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      ++++|||++..
T Consensus       293 ell~~p~~~~~  303 (496)
T PTZ00283        293 KLLNMPICKLF  303 (496)
T ss_pred             HHHhCHHHHHh
Confidence            99999998764

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=3.7e-29  Score=256.81  Aligned_cols=170  Identities=22%  Similarity=0.364  Sum_probs=134.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||.|||++||+||||||+|||++.++.++|+|||++........  ......||+.|+|||++.+
T Consensus       182 l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  261 (392)
T PHA03207        182 LPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLAL  261 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcC
Confidence            57889999999999999999999999999999999999999999999999876543211  2234579999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhC--------------------------CCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRN--------------------------PPPGL  129 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~--------------------------~~~~~  129 (488)
                           ..|+.++|||||||++|+|++|..||.+....   ..+..+++.                          ..+..
T Consensus       262 -----~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (392)
T PHA03207        262 -----DPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPY  336 (392)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCc
Confidence                 56889999999999999999999999764321   112221110                          00000


Q ss_pred             CC-----CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCccc
Q psy9090         130 YR-----ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       130 ~~-----~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~~  175 (488)
                      ..     ...++.++.++|.+||..||++|||+.++|.||||...+++.+.
T Consensus       337 ~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~~~~~~  387 (392)
T PHA03207        337 TIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEPINLLN  387 (392)
T ss_pred             cccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhccchhhhc
Confidence            00     12346788999999999999999999999999999988876543

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.96  E-value=1.8e-28  Score=236.24  Aligned_cols=159  Identities=31%  Similarity=0.622  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.|++.||.+||++|++||||||+||+++.++.++|+|||++..............+++.|+|||++.+  
T Consensus        99 l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  176 (257)
T cd08223          99 LPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSN--  176 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcC--
Confidence            478899999999999999999999999999999999999999999999998765443333445678999999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...+.......+.....+.  .+..+++.+.+++.+||..+|++||++.++
T Consensus       177 ---~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~  251 (257)
T cd08223         177 ---KPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPP--MPKDYSPELGELIATMLSKRPEKRPSVKSI  251 (257)
T ss_pred             ---CCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCC--CccccCHHHHHHHHHHhccCcccCCCHHHH
Confidence               567889999999999999999999998777665555555544332  245678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++||||
T Consensus       252 l~~~~~  257 (257)
T cd08223         252 LRQPYI  257 (257)
T ss_pred             hcCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.96  E-value=7.7e-29  Score=248.82  Aligned_cols=175  Identities=21%  Similarity=0.432  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........ ......||+.|+|||++.+.
T Consensus        99 l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  178 (332)
T cd05623          99 LPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAM  178 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhcc
Confidence            47888999999999999999999999999999999999999999999999875432211 22345799999999998743


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-C-CCCCCcCHHHHHHHHHhcccCCCC--CC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-L-YRASNWSQHYVDFIAECLEKNPEH--RP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~~~~li~~~L~~dP~~--Rp  155 (488)
                      ......++.++|||||||++|+|++|+.||..........++....... . .....+++.+++||.+||..+|.+  |+
T Consensus       179 ~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~  258 (332)
T cd05623         179 EDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQN  258 (332)
T ss_pred             ccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCC
Confidence            2222568889999999999999999999999887766666665432211 1 112457999999999999765544  68


Q ss_pred             CHHHHhcCcCCCCCCCCccc
Q psy9090         156 YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~  175 (488)
                      +++++++||||..++|..+.
T Consensus       259 ~~~~~~~h~~f~~~~~~~~~  278 (332)
T cd05623         259 GIEDFKQHPFFTGIDWDNIR  278 (332)
T ss_pred             CHHHHhCCCCcCCCCHHHHh
Confidence            99999999999998887543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.96  E-value=4.6e-29  Score=254.70  Aligned_cols=168  Identities=26%  Similarity=0.483  Sum_probs=135.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-----------------------   57 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-----------------------   57 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       
T Consensus        98 ~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (376)
T cd05598          98 FEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEW  177 (376)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccc
Confidence            478889999999999999999999999999999999999999999999997532100                       


Q ss_pred             --------------------cCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH
Q psy9090          58 --------------------FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA  117 (488)
Q Consensus        58 --------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~  117 (488)
                                          .......+||+.|+|||++.+     ..++.++|||||||++|+|++|+.||.+......
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~  252 (376)
T cd05598         178 SEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLR-----TGYTQLCDWWSVGVILYEMLVGQPPFLADTPAET  252 (376)
T ss_pred             cccccccccchhhhhhhhcccccccccCCCccccCHHHHcC-----CCCCcceeeeeccceeeehhhCCCCCCCCCHHHH
Confidence                                000123579999999999976     5688999999999999999999999998876655


Q ss_pred             HHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCCCC---CHHHHhcCcCCCCCCCCcc
Q psy9090         118 LFQIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPENDL  174 (488)
Q Consensus       118 ~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---s~~ell~hp~f~~~~~~~~  174 (488)
                      ...+.... ....+....+++.+.++|.+|+ .+|.+|+   ++.++++||||+.+++...
T Consensus       253 ~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~~~~  312 (376)
T cd05598         253 QLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGIDFASL  312 (376)
T ss_pred             HHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCHHHH
Confidence            55544321 1122223467899999999987 5999999   9999999999998876544

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=1.1e-28  Score=241.28  Aligned_cols=165  Identities=52%  Similarity=1.005  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++..............|++.|+|||.+....
T Consensus       118 ~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~  197 (282)
T cd06636         118 LKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE  197 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCccc
Confidence            46788899999999999999999999999999999999999999999999876543323334567899999999986432


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+|||||++|+|++|..||....+......+.....+. .....++..+.+||.+||..||.+||++.++
T Consensus       198 ~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~Rp~~~el  276 (282)
T cd06636         198 NPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPK-LKSKKWSKKFIDFIEGCLVKNYLSRPSTEQL  276 (282)
T ss_pred             CcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCC-CcccccCHHHHHHHHHHhCCChhhCcCHHHH
Confidence            223567889999999999999999999998776555555444433222 2345689999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++||||
T Consensus       277 l~~~~~  282 (282)
T cd06636         277 LKHPFI  282 (282)
T ss_pred             hcCCCC
Confidence            999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0577|consensus

Probab=99.96  E-value=4.4e-29  Score=249.58  Aligned_cols=165  Identities=39%  Similarity=0.783  Sum_probs=149.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |-|-+|+.|+.+.+.||+|||+++.||||||..|||++..|.|||+|||.+....    +..+++|||+|||||++...+
T Consensus       123 lqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~----PAnsFvGTPywMAPEVILAMD  198 (948)
T KOG0577|consen  123 LQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMA----PANSFVGTPYWMAPEVILAMD  198 (948)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcC----chhcccCCccccchhHheecc
Confidence            4577899999999999999999999999999999999999999999999986543    456899999999999998765


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .  +.|+-++||||||++..+|...+||+..++....++.|-.+..|.+. ...||..+++|+..||.+-|.+|||.+++
T Consensus       199 E--GqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLq-s~eWS~~F~~Fvd~CLqKipqeRptse~l  275 (948)
T KOG0577|consen  199 E--GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQ-SNEWSDYFRNFVDSCLQKIPQERPTSEEL  275 (948)
T ss_pred             c--cccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHHHHhhCcccCCcHHHH
Confidence            4  67999999999999999999999999999999999999988877764 56899999999999999999999999999


Q ss_pred             hcCcCCCCCCCC
Q psy9090         161 LEHPFITSLPEN  172 (488)
Q Consensus       161 l~hp~f~~~~~~  172 (488)
                      |.|+|+..-...
T Consensus       276 l~H~fv~R~Rp~  287 (948)
T KOG0577|consen  276 LKHRFVLRERPP  287 (948)
T ss_pred             hhcchhccCCCc
Confidence            999999765443

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.96  E-value=9.7e-29  Score=241.89  Aligned_cols=167  Identities=26%  Similarity=0.485  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++..+..++.||+.||.|||++|++||||||+|||++.++.++|+|||++......  ......|++.|+|||.+..+ 
T Consensus        94 l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~-  170 (279)
T cd05633          94 FSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKG-  170 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceecccc--CccCcCCCcCccCHHHhcCC-
Confidence            578899999999999999999999999999999999999999999999998654332  22334689999999998532 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP---  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---  155 (488)
                         ..++.++|+||+||++|+|++|..||.....  .....+.....  ....+..++.+++++|.+||..||++||   
T Consensus       171 ---~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  245 (279)
T cd05633         171 ---TAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTV--NVELPDSFSPELKSLLEGLLQRDVSKRLGCL  245 (279)
T ss_pred             ---CCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhcC--CcCCccccCHHHHHHHHHHhcCCHHHhcCCC
Confidence               4578899999999999999999999965432  12222222111  1223456799999999999999999999   


Q ss_pred             --CHHHHhcCcCCCCCCCCccc
Q psy9090         156 --YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 --s~~ell~hp~f~~~~~~~~~  175 (488)
                        |++++++||||+.+.+....
T Consensus       246 ~~~~~~~~~h~~~~~~~~~~~~  267 (279)
T cd05633         246 GRGAQEVKEHVFFKGIDWQQVY  267 (279)
T ss_pred             CCCHHHHHhCccccCCCHhHHh
Confidence              69999999999998876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=1.8e-28  Score=246.10  Aligned_cols=162  Identities=28%  Similarity=0.635  Sum_probs=130.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.||.|||+. +|+||||||+|||++.++.+||+|||++......  ......||+.|+|||++.+ 
T Consensus       100 ~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~g~~~y~aPE~~~~-  176 (331)
T cd06649         100 IPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQG-  176 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccccccc--ccccCCCCcCcCCHhHhcC-
Confidence            46888999999999999999986 6999999999999999999999999998765432  2344578999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh------------------------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR------------------------------------  123 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~------------------------------------  123 (488)
                          ..++.++|+|||||++|+|++|+.||........ ..++.                                    
T Consensus       177 ----~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (331)
T cd06649         177 ----THYSVQSDIWSMGLSLVELAIGRYPIPPPDAKEL-EAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAM  251 (331)
T ss_pred             ----CCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHhcccccccccCCccccCcccccccccccccccccccch
Confidence                5688999999999999999999999976554332 11111                                    


Q ss_pred             -----------CCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         124 -----------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       124 -----------~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                                 ...+. .....+++++++||.+||..||++|||+.++++||||+....
T Consensus       252 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~~  309 (331)
T cd06649         252 AIFELLDYIVNEPPPK-LPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSEV  309 (331)
T ss_pred             hHHHHHHHHHhCCCcC-CCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhccc
Confidence                       11111 112246789999999999999999999999999999987543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.96  E-value=1.4e-28  Score=250.77  Aligned_cols=166  Identities=26%  Similarity=0.465  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||+++...... .......+++.|+|||++.+.
T Consensus       100 l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  179 (372)
T cd07853         100 LSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGS  179 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCC
Confidence            5788999999999999999999999999999999999999999999999987543221 122334678999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh-----------------------CCC-CCC-----C
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-----------------------NPP-PGL-----Y  130 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~-----------------------~~~-~~~-----~  130 (488)
                          ..++.++||||+||++|+|++|++||.+.++...+..+..                       ... ++.     .
T Consensus       180 ----~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (372)
T cd07853         180 ----RHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYT  255 (372)
T ss_pred             ----CCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcc
Confidence                4578899999999999999999999987766544433321                       000 000     1


Q ss_pred             CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       131 ~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      .....++++.+||.+||..||.+|||+.++++||||....
T Consensus       256 ~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  295 (372)
T cd07853         256 LSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEGR  295 (372)
T ss_pred             cCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCCc
Confidence            1234578899999999999999999999999999998754

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.96  E-value=1.5e-28  Score=242.96  Aligned_cols=167  Identities=25%  Similarity=0.485  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||++..............+++.|+|||++.+. 
T Consensus       101 ~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-  179 (301)
T cd07873         101 INMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGS-  179 (301)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCC-
Confidence            4678899999999999999999999999999999999999999999999987644332233344678999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCC------------------CC------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPP------------------GL------YRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~------------------~~------~~~~  133 (488)
                         ..++.++|||||||++|+|++|++||...+.......+...   +..                  ..      ....
T Consensus       180 ---~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (301)
T cd07873         180 ---TDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAP  256 (301)
T ss_pred             ---CCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcC
Confidence               45788999999999999999999999877655444332211   000                  00      0012


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ..++.+++||.+||..||.+|||++++++||||..+.+
T Consensus       257 ~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~~  294 (301)
T cd07873         257 RLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLGE  294 (301)
T ss_pred             CCCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccccc
Confidence            45788999999999999999999999999999987654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.96  E-value=7.8e-29  Score=243.30  Aligned_cols=166  Identities=27%  Similarity=0.463  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||++...... .......|++.|+|||++.+  
T Consensus        99 l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~-~~~~~~~g~~~y~aPE~~~~--  175 (285)
T cd05630          99 FEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTIKGRVGTVGYMAPEVVKN--  175 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCC-ccccCCCCCccccChHHHcC--
Confidence            467889999999999999999999999999999999999999999999998654332 22234578999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-  156 (488)
                         ..++.++|+||+||++|+|++|..||......   ............  ..+..+++.+++|+.+||..||++||| 
T Consensus       176 ---~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~s~  250 (285)
T cd05630         176 ---ERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQE--EYSEKFSPDARSLCKMLLCKDPKERLGC  250 (285)
T ss_pred             ---CCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhh--hcCccCCHHHHHHHHHHhhcCHHHccCC
Confidence               56888999999999999999999999765422   122222222211  124567899999999999999999999 


Q ss_pred             ----HHHHhcCcCCCCCCCCcc
Q psy9090         157 ----MSELLEHPFITSLPENDL  174 (488)
Q Consensus       157 ----~~ell~hp~f~~~~~~~~  174 (488)
                          ++++++||||+.+.+..+
T Consensus       251 ~~~~~~~~~~h~~~~~~~~~~~  272 (285)
T cd05630         251 QGGGAREVKEHPLFKQINFKRL  272 (285)
T ss_pred             CCCchHHHHcChhhhccCHHHH
Confidence                899999999998777644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2e-28  Score=245.70  Aligned_cols=174  Identities=22%  Similarity=0.424  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++........ ......||+.|+|||++...
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  178 (331)
T cd05597          99 LPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAM  178 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhc
Confidence            57889999999999999999999999999999999999999999999999876543222 12234699999999998743


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCC-CCCCCcCHHHHHHHHHhcccCCCC--CC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGL-YRASNWSQHYVDFIAECLEKNPEH--RP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~-~~~~~~s~~~~~li~~~L~~dP~~--Rp  155 (488)
                      ......++.++||||+||++|+|++|+.||.+.........+..... ... .....+++.++++|++||..++.+  |+
T Consensus       179 ~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~  258 (331)
T cd05597         179 EDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRN  258 (331)
T ss_pred             cccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCC
Confidence            22224578899999999999999999999988776655555543221 111 112347899999999998764443  78


Q ss_pred             CHHHHhcCcCCCCCCCCcc
Q psy9090         156 YMSELLEHPFITSLPENDL  174 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~  174 (488)
                      ++.++++||||...+|...
T Consensus       259 ~~~~~l~hp~~~~~~~~~~  277 (331)
T cd05597         259 GLQDFKDHPFFEGIDWDNI  277 (331)
T ss_pred             CHHHHhcCCCCCCCCHHHH
Confidence            9999999999999887654

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.96  E-value=2e-28  Score=235.57  Aligned_cols=161  Identities=47%  Similarity=0.988  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||.|||+.|++||||+|+||+++.++.++|+|||++..............++..|+|||++.+  
T Consensus        96 l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~--  173 (256)
T cd06612          96 LTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQE--  173 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhc--
Confidence            478899999999999999999999999999999999999999999999998866544323344568899999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|+.||....+......+.....+....+..++..+.++|.+||..+|++|||+.++
T Consensus       174 ---~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~i  250 (256)
T cd06612         174 ---IGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQL  250 (256)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHH
Confidence               56788999999999999999999999877665554444433333333455678899999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      +.||||
T Consensus       251 l~~~~~  256 (256)
T cd06612         251 LQHPFI  256 (256)
T ss_pred             hcCCCC
Confidence            999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.96  E-value=1.7e-28  Score=240.27  Aligned_cols=162  Identities=28%  Similarity=0.515  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||++..............+++.|+|||++.+. 
T Consensus        98 ~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  176 (285)
T cd07861          98 MDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGS-  176 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCC-
Confidence            4788999999999999999999999999999999999999999999999987654332223344678899999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC-----------------CC------CCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP-----------------PG------LYRASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~-----------------~~------~~~~~~  134 (488)
                         ..++.++|+|||||++|+|++|++||.+.............   ..                 +.      ......
T Consensus       177 ---~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (285)
T cd07861         177 ---PRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKN  253 (285)
T ss_pred             ---CCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCC
Confidence               45788999999999999999999999876654433332211   00                 00      001234


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ++++++++|.+||..||.+|||+.++++||||
T Consensus       254 ~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         254 LDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             CCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            68899999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.96  E-value=2e-28  Score=239.92  Aligned_cols=166  Identities=53%  Similarity=0.972  Sum_probs=136.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||.|||+++++||||||+||+++.++.++|+|||++..............|++.|+|||++....
T Consensus       121 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  200 (286)
T cd06638         121 MEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQ  200 (286)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhh
Confidence            46788999999999999999999999999999999999999999999999876543322334457899999999986432


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|+||+||++|+|++|..||.................+....+..++..+.++|.+||..+|++|||+.++
T Consensus       201 ~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~el  280 (286)
T cd06638         201 QLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDL  280 (286)
T ss_pred             hccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHH
Confidence            22245788999999999999999999999877665555444444333333455678899999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++|+||
T Consensus       281 l~~~~~  286 (286)
T cd06638         281 LQHVFI  286 (286)
T ss_pred             hhcccC
Confidence            999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0192|consensus

Probab=99.96  E-value=2.2e-28  Score=244.52  Aligned_cols=157  Identities=32%  Similarity=0.589  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-CeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g-ivHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+...+..++.||+.|+.|||+++ ||||||||+|||++.++ ++||+|||+++.............||+.|||||++.+
T Consensus       139 l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~  218 (362)
T KOG0192|consen  139 LPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRG  218 (362)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcC
Confidence            567788999999999999999999 99999999999999998 9999999999876543223334689999999999985


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh-CCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      .   ...|+.++||||+|+++|||+||+.||.+.........+.. ...+..  +...++.+..||..||..||.+||++
T Consensus       219 ~---~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~--p~~~~~~l~~l~~~CW~~dp~~RP~f  293 (362)
T KOG0192|consen  219 E---KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPI--PKECPPHLSSLMERCWLVDPSRRPSF  293 (362)
T ss_pred             C---CCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCC--CccCCHHHHHHHHHhCCCCCCcCCCH
Confidence            2   26799999999999999999999999999998666666653 333433  44489999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .+++.
T Consensus       294 ~ei~~  298 (362)
T KOG0192|consen  294 LEIVS  298 (362)
T ss_pred             HHHHH
Confidence            98864

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=2.3e-28  Score=241.32  Aligned_cols=165  Identities=41%  Similarity=0.784  Sum_probs=140.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||++|++||||||+||+++.++.++|+|||++..............+++.|+|||.+.+  
T Consensus       112 l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  189 (296)
T cd06655         112 MDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR--  189 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcC--
Confidence            578899999999999999999999999999999999999999999999998765443223334568899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+|||||++|+|++|..||....+......+.....+....+..+++.+.++|.+||..+|.+||++.++
T Consensus       190 ---~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~i  266 (296)
T cd06655         190 ---KAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKEL  266 (296)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence               55788999999999999999999999887766655555444444444556788999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      +.||||+...
T Consensus       267 l~~~~~~~~~  276 (296)
T cd06655         267 LQHPFLKLAK  276 (296)
T ss_pred             hhChHhhhcc
Confidence            9999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.2e-28  Score=249.95  Aligned_cols=163  Identities=25%  Similarity=0.412  Sum_probs=124.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       154 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  230 (357)
T PHA03209        154 LPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA-PAFLGLAGTVETNAPEVLAR--  230 (357)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccC-cccccccccccccCCeecCC--
Confidence            578899999999999999999999999999999999999999999999998754322 22334579999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCC-CCCChH---------HHHHHHHhC--CCC-CCC-----------------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPF-EDMHPT---------RALFQIVRN--PPP-GLY-----------------  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf-~~~~~~---------~~~~~~~~~--~~~-~~~-----------------  130 (488)
                         ..++.++|||||||++|+|+++..|+ ......         ..+.+++..  ..+ ..+                 
T Consensus       231 ---~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (357)
T PHA03209        231 ---DKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASL  307 (357)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhccc
Confidence               56889999999999999999865554 321110         111111110  000 000                 


Q ss_pred             -----------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         131 -----------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       131 -----------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                                 ....++..+.+||.+||..||.+|||+.++|+||||+++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~~  357 (357)
T PHA03209        308 ERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQL  357 (357)
T ss_pred             CCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhccC
Confidence                       012346677889999999999999999999999999863

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.96  E-value=1.7e-28  Score=244.19  Aligned_cols=162  Identities=26%  Similarity=0.458  Sum_probs=123.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE----ccCCcEEEEecCCccccccccC---ccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl----~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+|||+++.......   ......||+.|+||
T Consensus       105 l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aP  184 (317)
T cd07867         105 LPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP  184 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCc
Confidence            4678899999999999999999999999999999999    5667899999999976543211   22345789999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---------HHHHHHHhC---CC----------CC---
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---------RALFQIVRN---PP----------PG---  128 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---------~~~~~~~~~---~~----------~~---  128 (488)
                      |++.+.    ..++.++||||+||++|+|+||.+||......         ....++...   +.          +.   
T Consensus       185 E~~~~~----~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (317)
T cd07867         185 ELLLGA----RHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPT  260 (317)
T ss_pred             HHhcCC----CccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchh
Confidence            998652    45788999999999999999999999643211         111111100   00          00   


Q ss_pred             --------C-----------CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         129 --------L-----------YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       129 --------~-----------~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                              .           ......+..+.+||.+||..||.+|||+.++|+||||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         261 LQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence                    0           0011235668899999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=2.4e-28  Score=241.15  Aligned_cols=164  Identities=40%  Similarity=0.768  Sum_probs=137.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||+.||+||||||+||+++.++.++|+|||++..............+++.|+|||.+.+  
T Consensus       113 ~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  190 (296)
T cd06654         113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR--  190 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcC--
Confidence            467789999999999999999999999999999999999999999999998765433222334578899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+||++|+|++|+.||....+......+.....+....+..++..+.++|.+||..+|++|||+.++
T Consensus       191 ---~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~ei  267 (296)
T cd06654         191 ---KAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (296)
T ss_pred             ---CCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHH
Confidence               55788999999999999999999999887765554444444433333455678999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||...
T Consensus       268 l~~~~~~~~  276 (296)
T cd06654         268 LQHQFLKIA  276 (296)
T ss_pred             hhChhhhcc
Confidence            999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG4279|consensus

Probab=99.96  E-value=3.4e-29  Score=254.09  Aligned_cols=164  Identities=35%  Similarity=0.686  Sum_probs=139.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +|..+.+|.+||++||.|||++.|||||||-+|+||+ -.|.+||+|||.++....-.....++.||..|||||++..+ 
T Consensus       673 NEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG-  751 (1226)
T KOG4279|consen  673 NESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQG-  751 (1226)
T ss_pred             chhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccC-
Confidence            5788999999999999999999999999999999997 47899999999999887666778899999999999999764 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH-HHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR-ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                        ..+|+.++|||||||.+.||.||++||....... .++++ .-.....+.|..+|.+++.+|.+|+.++|..||++++
T Consensus       752 --~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkV-GmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~  828 (1226)
T KOG4279|consen  752 --PRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKV-GMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKD  828 (1226)
T ss_pred             --CcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhh-cceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHH
Confidence              3679999999999999999999999997654333 33332 2111122246778999999999999999999999999


Q ss_pred             HhcCcCCCCC
Q psy9090         160 LLEHPFITSL  169 (488)
Q Consensus       160 ll~hp~f~~~  169 (488)
                      +|..||++.-
T Consensus       829 LL~DpFlq~~  838 (1226)
T KOG4279|consen  829 LLQDPFLQHN  838 (1226)
T ss_pred             hccCcccccC
Confidence            9999999764

>KOG0667|consensus

Probab=99.95  E-value=1.7e-28  Score=250.51  Aligned_cols=162  Identities=32%  Similarity=0.557  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC--cEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG--EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~--~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+...++.++.||+.||.+||+.||||+||||+|||+...+  .||++|||.+......   ..+.+.+..|+|||++.+
T Consensus       286 lsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~---vytYiQSRfYRAPEVILG  362 (586)
T KOG0667|consen  286 LSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQR---VYTYIQSRFYRAPEVILG  362 (586)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCc---ceeeeeccccccchhhcc
Confidence            56789999999999999999999999999999999997544  5999999999766543   236678899999999998


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh--CCCC---------------C---C---------
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--NPPP---------------G---L---------  129 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~--~~~~---------------~---~---------  129 (488)
                           .+|+.+.||||||||++||++|.+.|.+.+..+++..|+.  +.++               .   .         
T Consensus       363 -----lpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~  437 (586)
T KOG0667|consen  363 -----LPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSA  437 (586)
T ss_pred             -----CCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecc
Confidence                 7899999999999999999999999999988887777653  0000               0   0         


Q ss_pred             --------------------CCCCC-----------cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         130 --------------------YRASN-----------WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       130 --------------------~~~~~-----------~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                                          ..|..           -...+.+||++||..||.+|+|+.++|+|||+....
T Consensus       438 ~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~  509 (586)
T KOG0667|consen  438 PRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTS  509 (586)
T ss_pred             cccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccccc
Confidence                                00100           013468999999999999999999999999998643

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.95  E-value=2.7e-28  Score=238.59  Aligned_cols=169  Identities=28%  Similarity=0.497  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||.|||+.+++||||||+||+++.++.++|+|||++......  ......|++.|+|||++.++ 
T Consensus        94 l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~-  170 (278)
T cd05606          94 FSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKG-  170 (278)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCcc--CCcCcCCCcCCcCcHHhcCC-
Confidence            578999999999999999999999999999999999999999999999998755332  22345789999999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH--HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP---  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---  155 (488)
                         ..++.++|+||+|+++|+|++|..||......  ...........  ...+..+++.+.+++.+||..+|.+||   
T Consensus       171 ---~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~li~~~l~~~p~~R~~~~  245 (278)
T cd05606         171 ---VAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA--VELPDSFSPELRSLLEGLLQRDVNRRLGCL  245 (278)
T ss_pred             ---CCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccC--CCCCCcCCHHHHHHHHHHhhcCHHhccCCC
Confidence               35788999999999999999999999765321  11222222211  223445789999999999999999999   


Q ss_pred             --CHHHHhcCcCCCCCCCCccccc
Q psy9090         156 --YMSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       156 --s~~ell~hp~f~~~~~~~~~~~  177 (488)
                        ++.++++||||+...|+.....
T Consensus       246 ~~~~~~ll~~~~~~~~~~~~~~~~  269 (278)
T cd05606         246 GRGAQEVKEHPFFRSLDWQMVFLQ  269 (278)
T ss_pred             CCCHHHHHhCccccCCCchHhhhc
Confidence              9999999999999888765433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=2.2e-28  Score=257.22  Aligned_cols=162  Identities=26%  Similarity=0.503  Sum_probs=139.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......  ......+||+.|+|||++.+
T Consensus       166 l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  245 (478)
T PTZ00267        166 FQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWER  245 (478)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCC
Confidence            4678899999999999999999999999999999999999999999999998654321  12345679999999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                           ..++.++|||||||++|+|++|..||.+.........+.....++  .+..++..+.++|.+||..+|++||++.
T Consensus       246 -----~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~Rps~~  318 (478)
T PTZ00267        246 -----KRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDP--FPCPVSSGMKALLDPLLSKNPALRPTTQ  318 (478)
T ss_pred             -----CCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--CCccCCHHHHHHHHHHhccChhhCcCHH
Confidence                 568899999999999999999999998887777666666544332  3456789999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      +++.|+|++.+
T Consensus       319 ~~l~~~~~~~~  329 (478)
T PTZ00267        319 QLLHTEFLKYV  329 (478)
T ss_pred             HHHhCHHHHHH
Confidence            99999999653

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.95  E-value=5e-28  Score=237.51  Aligned_cols=166  Identities=36%  Similarity=0.720  Sum_probs=139.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++|++||||+|+||+++.++.++|+|||++..............|++.|+|||.+.+  
T Consensus       112 ~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  189 (285)
T cd06648         112 MNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISR--  189 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcC--
Confidence            467889999999999999999999999999999999999999999999987655433233344568999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...++......+.....+....+...+..+.++|.+||..+|++||++.++
T Consensus       190 ---~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i  266 (285)
T cd06648         190 ---LPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAEL  266 (285)
T ss_pred             ---CCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHH
Confidence               56788999999999999999999999887766655555544333333344478999999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||+....
T Consensus       267 l~~~~~~~~~~  277 (285)
T cd06648         267 LNHPFLAKAGP  277 (285)
T ss_pred             ccCcccccCCC
Confidence            99999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=3e-28  Score=240.00  Aligned_cols=165  Identities=35%  Similarity=0.701  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.++|+|||++..............|++.|+|||.+.+  
T Consensus       115 l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  192 (292)
T cd06658         115 MNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISR--  192 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHcc--
Confidence            467889999999999999999999999999999999999999999999998755433333344578999999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...........+.....+........+..+.+++.+||..+|.+|||++++
T Consensus       193 ---~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~i  269 (292)
T cd06658         193 ---LPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQEL  269 (292)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence               56788999999999999999999999887765554444433333333334578899999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      ++||||....
T Consensus       270 l~~~~~~~~~  279 (292)
T cd06658         270 LQHPFLKLAG  279 (292)
T ss_pred             hhChhhhccC
Confidence            9999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=3.1e-28  Score=238.95  Aligned_cols=172  Identities=25%  Similarity=0.428  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||++...... .......|++.|+|||++.+  
T Consensus        99 ~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~-~~~~~~~g~~~~~aPE~~~~--  175 (285)
T cd05632          99 FEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG-ESIRGRVGTVGYMAPEVLNN--  175 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCC-CcccCCCCCcCccChHHhcC--
Confidence            578899999999999999999999999999999999999999999999998654322 22234578999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY---  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps---  156 (488)
                         ..++.++|+||+||++|+|++|..||.+.........+...... ....+..++..+.+|+.+||..+|++||+   
T Consensus       176 ---~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05632         176 ---QRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQE  252 (285)
T ss_pred             ---CCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcc
Confidence               56888999999999999999999999876654333333221111 11224567889999999999999999999   


Q ss_pred             --HHHHhcCcCCCCCCCCcccccc
Q psy9090         157 --MSELLEHPFITSLPENDLHLST  178 (488)
Q Consensus       157 --~~ell~hp~f~~~~~~~~~~~~  178 (488)
                        +.+++.|+||+..++..+....
T Consensus       253 ~~~~~l~~~~~~~~~~~~~~~~~~  276 (285)
T cd05632         253 EGAGEVKRHPFFRNMNFKRLEAGM  276 (285)
T ss_pred             cChHHHHcChhhhcCCHHHHhcCc
Confidence              8899999999998876544333

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=6.6e-28  Score=233.05  Aligned_cols=160  Identities=33%  Similarity=0.659  Sum_probs=132.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc---ccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK---KTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~---~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.|++.||.|||+.|++||||+|+||+++.++.++|+|||+++.........   ....+++.|+|||.+.
T Consensus       101 ~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (263)
T cd06625         101 LTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVIS  180 (263)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceec
Confidence            4678899999999999999999999999999999999999999999999987543221111   2346788999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      +     ..++.++|+||+|+++|+|++|+.||..........+....... ...+...+..+.++|.+||..+|.+|||+
T Consensus       181 ~-----~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  254 (263)
T cd06625         181 G-----EGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN-PQLPSHVSPDARNFLRRTFVENAKKRPSA  254 (263)
T ss_pred             c-----CCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCC-CCCCccCCHHHHHHHHHHhhcCcccCCCH
Confidence            6     45888999999999999999999999877665555444433222 22345678999999999999999999999


Q ss_pred             HHHhcCcCC
Q psy9090         158 SELLEHPFI  166 (488)
Q Consensus       158 ~ell~hp~f  166 (488)
                      .++++||||
T Consensus       255 ~~ll~~~~~  263 (263)
T cd06625         255 EELLRHFFV  263 (263)
T ss_pred             HHHhhCCCC
Confidence            999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=3.5e-28  Score=237.96  Aligned_cols=162  Identities=26%  Similarity=0.452  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||+++.............+++.|+|||++.+. 
T Consensus        96 ~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  174 (284)
T cd07839          96 IDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA-  174 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCC-
Confidence            5788999999999999999999999999999999999999999999999987654332333345678899999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCC-CCChHHHHHHHHhC---------------CC----CCC-------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFE-DMHPTRALFQIVRN---------------PP----PGL-------YRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~-~~~~~~~~~~~~~~---------------~~----~~~-------~~~~  133 (488)
                         ..++.++|+||+||++|+|++|..|+. +.+.......+.+.               +.    +..       ....
T Consensus       175 ---~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (284)
T cd07839         175 ---KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVP  251 (284)
T ss_pred             ---cccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcc
Confidence               447889999999999999999988864 33333322222110               00    000       0112


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .++++++++|.+||..||.+|||+++++.||||
T Consensus       252 ~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         252 KLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             cCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            467889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.95  E-value=2.9e-28  Score=240.72  Aligned_cols=166  Identities=40%  Similarity=0.772  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||+.|++||||||+||+++.++.++|+|||++..............+++.|+|||.+.+  
T Consensus       112 ~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  189 (297)
T cd06656         112 MDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR--  189 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcC--
Confidence            467889999999999999999999999999999999999999999999998765433222334568899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+||++|+|++|..||....+......+.....+....+..++..+++|+.+||..+|++||++.++
T Consensus       190 ---~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  266 (297)
T cd06656         190 ---KAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKEL  266 (297)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence               56788999999999999999999999876654443333333333333455678899999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||+....
T Consensus       267 l~~~~~~~~~~  277 (297)
T cd06656         267 LQHPFLKLAKP  277 (297)
T ss_pred             hcCchhccccc
Confidence            99999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=6.1e-28  Score=235.14  Aligned_cols=165  Identities=47%  Similarity=0.975  Sum_probs=138.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||.|||+++++||||+|+||+++.++.++|+|||+++.............+++.|+|||.+.+  
T Consensus        95 ~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~--  172 (274)
T cd06609          95 LDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQ--  172 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhcc--
Confidence            578899999999999999999999999999999999999999999999999876544334445678899999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|.+||....+......+.....+.. ....++..+.+++.+||..+|++|||++++
T Consensus       173 ---~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~i  248 (274)
T cd06609         173 ---SGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSL-EGNKFSKPFKDFVSLCLNKDPKERPSAKEL  248 (274)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCC-cccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence               4588999999999999999999999987766555544444433322 222378999999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||.....
T Consensus       249 l~~~~~~~~~~  259 (274)
T cd06609         249 LKHKFIKKAKK  259 (274)
T ss_pred             hhChhhcCCCc
Confidence            99999987543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=1.1e-27  Score=230.48  Aligned_cols=159  Identities=29%  Similarity=0.589  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||+++.............|++.|+|||++..  
T Consensus        98 ~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  175 (256)
T cd08529          98 LPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCED--  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcC--
Confidence            467888999999999999999999999999999999999999999999998766543333345578899999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||||+++|+|++|+.||...........+.....+..  +..++..+.++|.+||..+|++||++.++
T Consensus       176 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l  250 (256)
T cd08529         176 ---KPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPV--SQMYSQQLAQLIDQCLTKDYRQRPDTFQL  250 (256)
T ss_pred             ---CCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCC--ccccCHHHHHHHHHHccCCcccCcCHHHH
Confidence               5678899999999999999999999988776666666665544332  33678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++|||+
T Consensus       251 l~~~~~  256 (256)
T cd08529         251 LRNPSL  256 (256)
T ss_pred             hhCCCC
Confidence            999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.95  E-value=6.9e-28  Score=235.67  Aligned_cols=164  Identities=32%  Similarity=0.692  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++......  ......||+.|+|||++.+  
T Consensus        92 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~--  167 (279)
T cd06619          92 IPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS--IAKTYVGTNAYMAPERISG--  167 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccc--cccCCCCChhhcCceeecC--
Confidence            467889999999999999999999999999999999999999999999998765432  2344578999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH------HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT------RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                         ..++.++|+||+||++|+|++|..||......      ....+......+.......+++++.++|.+||..+|.+|
T Consensus       168 ---~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  244 (279)
T cd06619         168 ---EQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKER  244 (279)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhC
Confidence               56788999999999999999999999643211      111222222222222334578899999999999999999


Q ss_pred             CCHHHHhcCcCCCCCCC
Q psy9090         155 PYMSELLEHPFITSLPE  171 (488)
Q Consensus       155 ps~~ell~hp~f~~~~~  171 (488)
                      |+++++++||||.....
T Consensus       245 p~~~eil~~~~~~~~~~  261 (279)
T cd06619         245 PAPENLMDHPFIVQYND  261 (279)
T ss_pred             CCHHHHhcCcccccccC
Confidence            99999999999987643

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.95  E-value=7.7e-28  Score=237.71  Aligned_cols=164  Identities=37%  Similarity=0.763  Sum_probs=138.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||++..............|++.|+|||++.+  
T Consensus       114 ~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  191 (297)
T cd06659         114 LNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISR--  191 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHcc--
Confidence            468899999999999999999999999999999999999999999999998755433333345678999999999975  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+||++|+|++|+.||...........+.....+.......++..+.++|.+||..+|.+||++.++
T Consensus       192 ---~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~l  268 (297)
T cd06659         192 ---TPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQEL  268 (297)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHH
Confidence               56788999999999999999999999877766555554443333333345678899999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||...
T Consensus       269 l~~~~~~~~  277 (297)
T cd06659         269 LDHPFLLQT  277 (297)
T ss_pred             hhChhhccC
Confidence            999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.95  E-value=1e-27  Score=235.80  Aligned_cols=168  Identities=29%  Similarity=0.524  Sum_probs=141.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++..++.++.||+.||.|||++|++|+||+|+||+++.++.+||+|||++......   .....+++.|+|||.+.+  
T Consensus        98 l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~--  172 (290)
T cd05580          98 FPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR---TYTLCGTPEYLAPEIILS--  172 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC---CCCCCCCccccChhhhcC--
Confidence            578899999999999999999999999999999999999999999999998765433   334578899999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|+||||+++|+|++|..||..........++.... .  ..+..++..++++|.+||..+|.+|+     
T Consensus       173 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~  246 (290)
T cd05580         173 ---KGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGK-V--RFPSFFSPDAKDLIRNLLQVDLTKRLGNLKN  246 (290)
T ss_pred             ---CCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCC-c--cCCccCCHHHHHHHHHHccCCHHHccCcccC
Confidence               457789999999999999999999998777555455554332 1  23456789999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~  179 (488)
                      +++++++||||..++|..+.....
T Consensus       247 ~~~~l~~~~~~~~~~~~~~~~~~~  270 (290)
T cd05580         247 GVNDIKNHPWFAGIDWIALLQRKI  270 (290)
T ss_pred             CHHHHHcCcccccCCHHHHhhccC
Confidence            899999999999998876544333

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.95  E-value=1.2e-27  Score=235.50  Aligned_cols=163  Identities=23%  Similarity=0.438  Sum_probs=131.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++|++||||+|+||+++. ++.+||+|||++..............+++.|+|||++.+.
T Consensus       107 ~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  186 (295)
T cd07837         107 LPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGS  186 (295)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCC
Confidence            478899999999999999999999999999999999998 8899999999987654332223334578899999988642


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---CCCC----------------------CCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---PPGL----------------------YRASN  134 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---~~~~----------------------~~~~~  134 (488)
                          ..++.++|+||+|+++|+|++|.+||.+.........+....   ....                      .....
T Consensus       187 ----~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (295)
T cd07837         187 ----THYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPD  262 (295)
T ss_pred             ----CCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccc
Confidence                457889999999999999999999998876655544443210   0000                      00134


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT  167 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  167 (488)
                      +++.+.+||.+||..+|.+||++.+++.||||+
T Consensus       263 ~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         263 LSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             cCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence            688899999999999999999999999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.95  E-value=8.8e-28  Score=238.43  Aligned_cols=166  Identities=30%  Similarity=0.435  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++|++||||||+||+++.++.+||+|||++..............+++.|+|||++.+. 
T Consensus       105 l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  183 (309)
T cd07845         105 FSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGC-  183 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCC-
Confidence            5788999999999999999999999999999999999999999999999987654432222333467889999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---CC---------------CC---------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---PG---------------LY---------RAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---~~---------------~~---------~~~  133 (488)
                         ..++.++|+||+||++|+|++|.+||.+.+.......+.....   ..               ..         ...
T Consensus       184 ---~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (309)
T cd07845         184 ---TTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFP  260 (309)
T ss_pred             ---CCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhcc
Confidence               4578899999999999999999999988776665544433100   00               00         001


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      ..++.+.++|.+||..||++|||+++++.||||++.+
T Consensus       261 ~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~  297 (309)
T cd07845         261 WLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKP  297 (309)
T ss_pred             ccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCC
Confidence            2478889999999999999999999999999998643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.3e-27  Score=237.87  Aligned_cols=170  Identities=26%  Similarity=0.482  Sum_probs=139.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---------------------   59 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---------------------   59 (488)
                      +++..++.++.||+.||+|||+.|++|+||||+||+++.++.++|+|||++........                     
T Consensus       100 l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (316)
T cd05574         100 LSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSE  179 (316)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchh
Confidence            46788999999999999999999999999999999999999999999998765422110                     


Q ss_pred             --------ccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCC
Q psy9090          60 --------KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYR  131 (488)
Q Consensus        60 --------~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                              ......||..|+|||++.+     ..++.++||||||+++|+|++|..||.+.........+..... ....
T Consensus       180 ~~~~~~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~~  253 (316)
T cd05574         180 TFSEEPSFRSNSFVGTEEYIAPEVISG-----DGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEV-TFPG  253 (316)
T ss_pred             hhcccccCCCCCCcCccCCcCHHHHcC-----CCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCc-cCCC
Confidence                    1123468889999999976     5578899999999999999999999988776665555553322 2222


Q ss_pred             CCCcCHHHHHHHHHhcccCCCCCCC----HHHHhcCcCCCCCCCCcccc
Q psy9090         132 ASNWSQHYVDFIAECLEKNPEHRPY----MSELLEHPFITSLPENDLHL  176 (488)
Q Consensus       132 ~~~~s~~~~~li~~~L~~dP~~Rps----~~ell~hp~f~~~~~~~~~~  176 (488)
                      ....++.++++|.+||..+|++|||    ++++++||||++.+|..+..
T Consensus       254 ~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~~~~  302 (316)
T cd05574         254 SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRH  302 (316)
T ss_pred             ccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCChhhccc
Confidence            2336899999999999999999999    99999999999988876655

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.95  E-value=9.8e-28  Score=232.65  Aligned_cols=163  Identities=44%  Similarity=0.884  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||++..............|++.|+|||++... 
T Consensus       103 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  181 (267)
T cd06645         103 LSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVE-  181 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccc-
Confidence            5788999999999999999999999999999999999999999999999987654333333455789999999997421 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CC-CCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PP-GLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                       ....++.++|+|||||++|+|++|..||....+........... .+ .......++..+.++|.+||..+|++|||++
T Consensus       182 -~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  260 (267)
T cd06645         182 -RKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAE  260 (267)
T ss_pred             -cCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHH
Confidence             11457889999999999999999999997665444333332221 11 1112235788999999999999999999999


Q ss_pred             HHhcCcC
Q psy9090         159 ELLEHPF  165 (488)
Q Consensus       159 ell~hp~  165 (488)
                      ++++|||
T Consensus       261 ~ll~~~~  267 (267)
T cd06645         261 KLLQHPF  267 (267)
T ss_pred             HHhcCCC
Confidence            9999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.95  E-value=1.3e-27  Score=231.14  Aligned_cols=165  Identities=32%  Similarity=0.575  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||++|++|+||+|+||+++.++.++|+|||++...... .......+++.|+|||.+..  
T Consensus        90 l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~-~~~~~~~~~~~~~~PE~~~~--  166 (262)
T cd05572          90 FDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG-QKTWTFCGTPEYVAPEIILN--  166 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc-cccccccCCcCccChhHhcC--
Confidence            478889999999999999999999999999999999999999999999998766443 12334578899999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC--hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC--
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH--PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY--  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps--  156 (488)
                         ..++.++|+||+|+++|+|++|..||....  .......+..... ....+...++.++++|.+||..+|++||+  
T Consensus       167 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~  242 (262)
T cd05572         167 ---KGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNG-KLEFPNYIDKAAKDLIKQLLRRNPEERLGNL  242 (262)
T ss_pred             ---CCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCC-CCCCCcccCHHHHHHHHHHccCChhhCcCCc
Confidence               567889999999999999999999997766  4444444443221 22234445899999999999999999999  


Q ss_pred             ---HHHHhcCcCCCCCCCC
Q psy9090         157 ---MSELLEHPFITSLPEN  172 (488)
Q Consensus       157 ---~~ell~hp~f~~~~~~  172 (488)
                         ++++++||||++..|+
T Consensus       243 ~~~~~~l~~~~~~~~~~~~  261 (262)
T cd05572         243 KGGIKDIKKHKWFNGFDWE  261 (262)
T ss_pred             ccCHHHHhcChhhhCCCCC
Confidence               9999999999988775

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=9.8e-28  Score=231.57  Aligned_cols=163  Identities=50%  Similarity=1.003  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++..............++..|+|||.+....
T Consensus        98 l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~  177 (262)
T cd06613          98 LSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVER  177 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccc
Confidence            57889999999999999999999999999999999999999999999999876554322334557888999999986521


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      .  ..++.++|+||+|+++|+|++|.+||....+......+...  ..+.......++.++.+++.+||..+|..|||+.
T Consensus       178 ~--~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  255 (262)
T cd06613         178 K--GGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTAT  255 (262)
T ss_pred             c--CCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHH
Confidence            1  26788999999999999999999999887766555544443  2222223345678899999999999999999999


Q ss_pred             HHhcCcC
Q psy9090         159 ELLEHPF  165 (488)
Q Consensus       159 ell~hp~  165 (488)
                      +++.|+|
T Consensus       256 ~il~~~~  262 (262)
T cd06613         256 KLLQHPF  262 (262)
T ss_pred             HHhcCCC
Confidence            9999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=7.5e-28  Score=241.55  Aligned_cols=174  Identities=21%  Similarity=0.421  Sum_probs=138.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++........ ......||+.|+|||++.+.
T Consensus        99 l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  178 (331)
T cd05624          99 LPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAM  178 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhcc
Confidence            47889999999999999999999999999999999999999999999999876543222 12335799999999998753


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCC-CCCCcCHHHHHHHHHhcccCCCC--CC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLY-RASNWSQHYVDFIAECLEKNPEH--RP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~li~~~L~~dP~~--Rp  155 (488)
                      ......++.++|+||+||++|+|++|+.||...........+..... ...+ ....++..++++|.+||..++.+  |+
T Consensus       179 ~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~  258 (331)
T cd05624         179 EDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQN  258 (331)
T ss_pred             ccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCC
Confidence            22224578899999999999999999999988776665555544321 1111 12346899999999999876654  46


Q ss_pred             CHHHHhcCcCCCCCCCCcc
Q psy9090         156 YMSELLEHPFITSLPENDL  174 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~  174 (488)
                      +++++++||||..++|...
T Consensus       259 ~~~~~~~h~~f~~~~~~~~  277 (331)
T cd05624         259 GIEDFKKHAFFEGIDWENI  277 (331)
T ss_pred             CHHHHhcCCCcCCCCHHHH
Confidence            8999999999999888754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=7.6e-28  Score=250.35  Aligned_cols=163  Identities=20%  Similarity=0.401  Sum_probs=125.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.+++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       257 l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~  336 (461)
T PHA03211        257 LGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAG  336 (461)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcC
Confidence            57889999999999999999999999999999999999999999999999876432211  1234579999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-------hHHHHHHHHhCCC---CCC-------------------
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-------PTRALFQIVRNPP---PGL-------------------  129 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-------~~~~~~~~~~~~~---~~~-------------------  129 (488)
                           ..++.++|||||||++|+|++|..|+....       ....+.+++....   ...                   
T Consensus       337 -----~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  411 (461)
T PHA03211        337 -----DPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARN  411 (461)
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcc
Confidence                 568899999999999999999876653221       0122222222110   000                   


Q ss_pred             ----CC------CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         130 ----YR------ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       130 ----~~------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                          ..      ...++..+.+||.+||..||.+|||+.|+|+||||++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        412 RRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             cCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence                00      0123568899999999999999999999999999974

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.95  E-value=8e-28  Score=236.02  Aligned_cols=169  Identities=38%  Similarity=0.677  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.||+|||+. +++||||||+||+++.++.++|+|||++...... .......|++.|+|||++...
T Consensus       104 l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~  182 (288)
T cd06616         104 IPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS-IAKTRDAGCRPYMAPERIDPS  182 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccC-CccccccCccCccCHHHhccc
Confidence            46788999999999999999974 9999999999999999999999999998765432 222334688899999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCCC--CCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~~--~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .  ...++.++|+||+||++|+|++|++||...... ....+......+....  +..++..+.+||.+||..+|++|||
T Consensus       183 ~--~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt  260 (288)
T cd06616         183 A--RDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPK  260 (288)
T ss_pred             c--ccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcC
Confidence            1  135788999999999999999999999765421 2223333332222221  2347899999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCC
Q psy9090         157 MSELLEHPFITSLPEN  172 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~  172 (488)
                      +++++.||||+...+.
T Consensus       261 ~~~i~~~~~~~~~~~~  276 (288)
T cd06616         261 YKELLEHPFIKDYEER  276 (288)
T ss_pred             HHHHhcChhhhchhhc
Confidence            9999999999876544

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.95  E-value=1.2e-27  Score=231.55  Aligned_cols=162  Identities=44%  Similarity=0.860  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc----cccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK----KKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~----~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||.|||++|++||||+|+||+++.++.++|+|||++.........    .....|++.|+|||++
T Consensus        99 ~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~  178 (267)
T cd06610          99 LDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVM  178 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHH
Confidence            467889999999999999999999999999999999999999999999998765433221    2344688999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCC---CCcCHHHHHHHHHhcccCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRA---SNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~li~~~L~~dP~~  153 (488)
                      ...    ..++.++|+||+||++|+|++|+.||.................+.....   ..+++.+.+++.+||..||++
T Consensus       179 ~~~----~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  254 (267)
T cd06610         179 EQV----HGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSK  254 (267)
T ss_pred             ccc----cCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhh
Confidence            752    3578899999999999999999999988776665555555443333222   356899999999999999999


Q ss_pred             CCCHHHHhcCcCC
Q psy9090         154 RPYMSELLEHPFI  166 (488)
Q Consensus       154 Rps~~ell~hp~f  166 (488)
                      |||+.+++.||||
T Consensus       255 Rp~~~~ll~~p~~  267 (267)
T cd06610         255 RPTAEELLKHKFF  267 (267)
T ss_pred             CcCHHHHhhCCCC
Confidence            9999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.95  E-value=2.1e-28  Score=235.84  Aligned_cols=161  Identities=36%  Similarity=0.706  Sum_probs=129.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhc-cc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR-CG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~-~~   79 (488)
                      +++.+++.++.||+.||.+||++|++|+||||+||+++.++.++|+|||.+..............+++.|+|||++. + 
T Consensus        95 ~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  173 (260)
T PF00069_consen   95 LSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQG-  173 (260)
T ss_dssp             BBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTT-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            46789999999999999999999999999999999999999999999999875422223445667899999999987 3 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                          ..++.++|+||||+++|+|++|..||.....   .....+......+. .......++.+.++|.+||..||++||
T Consensus       174 ----~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  249 (260)
T PF00069_consen  174 ----KKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRP  249 (260)
T ss_dssp             ----SSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGST
T ss_pred             ----ccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCc
Confidence                5678999999999999999999999988732   22222222211110 001111248999999999999999999


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      |+.++++||||
T Consensus       250 ~~~~l~~~~~~  260 (260)
T PF00069_consen  250 SAEELLKHPWF  260 (260)
T ss_dssp             THHHHHTSGGG
T ss_pred             CHHHHhcCCCC
Confidence            99999999997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0587|consensus

Probab=99.95  E-value=2.6e-28  Score=254.58  Aligned_cols=168  Identities=54%  Similarity=1.024  Sum_probs=161.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |.|+.+++|++.++.|+.+||.+.++|||||-.|||++.+|.|||+|||++...........+.+|||.|||||++.+.+
T Consensus       120 l~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e  199 (953)
T KOG0587|consen  120 LKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDE  199 (953)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeeccc
Confidence            57899999999999999999999999999999999999999999999999998888777888999999999999999877


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....|+..+|+||||++..||.-|.+|+.++.+...++.+.++++|.+..+..|++++.++|..||.+|-.+||+..++
T Consensus       200 ~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~l  279 (953)
T KOG0587|consen  200 SPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEEL  279 (953)
T ss_pred             CCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhh
Confidence            76778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |+|||++.
T Consensus       280 l~hpFi~e  287 (953)
T KOG0587|consen  280 LKHPFITE  287 (953)
T ss_pred             ccCCcccc
Confidence            99999984

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.4e-27  Score=230.60  Aligned_cols=163  Identities=31%  Similarity=0.506  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||+.|++||||+|+||+++.++.++|+|||++.....    .....+++.|+|||.+.+  
T Consensus        94 ~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~----~~~~~~~~~y~~pe~~~~--  167 (260)
T cd05611          94 LPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE----NKKFVGTPDYLAPETILG--  167 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc----cccCCCCcCccChhhhcC--
Confidence            47889999999999999999999999999999999999999999999998865432    234568899999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCCC---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRPY---  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps---  156 (488)
                         ..++.++|+||+|+++|+|++|..||...........+..... ........+++.+.++|.+||..+|++||+   
T Consensus       168 ---~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  244 (260)
T cd05611         168 ---VGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANG  244 (260)
T ss_pred             ---CCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCc
Confidence               4478899999999999999999999988776555444433221 111123357899999999999999999995   


Q ss_pred             HHHHhcCcCCCCCCCC
Q psy9090         157 MSELLEHPFITSLPEN  172 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~  172 (488)
                      +++++.||||+.+.|+
T Consensus       245 ~~~~l~~~~~~~~~~~  260 (260)
T cd05611         245 YQEIKSHPFFKSINWD  260 (260)
T ss_pred             HHHHHcChHhhcCCCC
Confidence            5799999999988774

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.95  E-value=1.9e-27  Score=239.11  Aligned_cols=156  Identities=28%  Similarity=0.514  Sum_probs=125.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......  ......+++.|+|||++.+
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  250 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFD  250 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhc
Confidence            45778899999999999999999999999999999999999999999999875432211  1223345678999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+..........+..... ...+...++.+.+++.+||..||++|||+
T Consensus       251 -----~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~RPs~  324 (338)
T cd05102         251 -----KVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTR-MRAPENATPEIYRIMLACWQGDPKERPTF  324 (338)
T ss_pred             -----CCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHccCChhhCcCH
Confidence                 568899999999999999996 99999876544444343333221 22345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       325 ~el~~  329 (338)
T cd05102         325 SALVE  329 (338)
T ss_pred             HHHHH
Confidence            99975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.95  E-value=1.4e-27  Score=233.26  Aligned_cols=173  Identities=31%  Similarity=0.497  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||++|++||||+|+||+++.++.++|+|||.+...... .......++..|+|||++.+  
T Consensus        92 ~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~y~~PE~~~~--  168 (277)
T cd05577          92 FPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG-KKIKGRAGTPGYMAPEVLQG--  168 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccC-CccccccCCCCcCCHHHhcC--
Confidence            578899999999999999999999999999999999999999999999988755432 22334567889999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRP----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----  155 (488)
                         ..++.++|+||+|+++|+|++|+.||...........+..... .....+..+++.+.++|.+||..+|.+||    
T Consensus       169 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         169 ---EVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             ---CCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence               4578899999999999999999999976543211122221111 11123456799999999999999999999    


Q ss_pred             -CHHHHhcCcCCCCCCCCccccccc
Q psy9090         156 -YMSELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       156 -s~~ell~hp~f~~~~~~~~~~~~~  179 (488)
                       ++.++++||||+.++|........
T Consensus       246 ~~~~~ll~h~~~~~~~~~~~~~~~~  270 (277)
T cd05577         246 GSADEVREHPLFKDLNWRRLEAGML  270 (277)
T ss_pred             ccHHHHHhChhhhcCChhhhhcCCC
Confidence             888899999999988876544333

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.95  E-value=2.3e-27  Score=232.12  Aligned_cols=162  Identities=30%  Similarity=0.555  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||++..............++..|+|||++.+. 
T Consensus        97 ~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  175 (286)
T cd07847          97 VPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGD-  175 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCC-
Confidence            5788999999999999999999999999999999999999999999999987665432233345678899999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---------------------CCCCC-------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---------------------PPGLY-------RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---------------------~~~~~-------~~  132 (488)
                         ..++.++|+||+|+++|+|++|.+||.+.........+....                     .+...       ..
T Consensus       176 ---~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (286)
T cd07847         176 ---TQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKF  252 (286)
T ss_pred             ---CCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHh
Confidence               457889999999999999999999998776554443332100                     00000       01


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..++..+.+||.+||..+|++||++.+++.||||
T Consensus       253 ~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         253 PNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             ccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            2457889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=2.2e-27  Score=230.07  Aligned_cols=159  Identities=35%  Similarity=0.716  Sum_probs=132.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC------ccccccCCCccccch
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD------KKKTFLGSPSWMAPE   74 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~------~~~~~~gt~~y~aPE   74 (488)
                      +++..++.++.|++.||+|||++|++||||+|+||+++.++.++|+|||+++.......      ......|++.|+|||
T Consensus       103 l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe  182 (267)
T cd06628         103 FEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPE  182 (267)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChh
Confidence            46788999999999999999999999999999999999999999999999876542111      112345788999999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      .+.+     ..++.++|+||+||++|+|++|..||...........+.....+.  .+..++..+.++|++||..+|.+|
T Consensus       183 ~~~~-----~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~R  255 (267)
T cd06628         183 VVKQ-----TSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPE--IPSNISSEAIDFLEKTFEIDHNKR  255 (267)
T ss_pred             Hhcc-----CCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCc--CCcccCHHHHHHHHHHccCCchhC
Confidence            9875     567889999999999999999999998876655555544433322  245678999999999999999999


Q ss_pred             CCHHHHhcCcCC
Q psy9090         155 PYMSELLEHPFI  166 (488)
Q Consensus       155 ps~~ell~hp~f  166 (488)
                      |++.++++||||
T Consensus       256 p~~~~il~~~~~  267 (267)
T cd06628         256 PTAAELLKHPFL  267 (267)
T ss_pred             cCHHHHhhCCCC
Confidence            999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0608|consensus

Probab=99.95  E-value=3.3e-28  Score=244.87  Aligned_cols=169  Identities=25%  Similarity=0.495  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccc--cc---------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NT---------------------   57 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~--~~---------------------   57 (488)
                      |+|+.+++|+.++..|+++.|+.|+|||||||+|||||.+|+|||+|||+|+-+.  +.                     
T Consensus       726 FeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~  805 (1034)
T KOG0608|consen  726 FEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEW  805 (1034)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhh
Confidence            5789999999999999999999999999999999999999999999999987321  00                     


Q ss_pred             -------------------cCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHH
Q psy9090          58 -------------------FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL  118 (488)
Q Consensus        58 -------------------~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~  118 (488)
                                         .......+||+.|+|||++..     .+|+..||+||.|||||+|+.|++||-+..+.+..
T Consensus       806 ~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r-----~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq  880 (1034)
T KOG0608|consen  806 ADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLAR-----TGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQ  880 (1034)
T ss_pred             ccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcc-----cCccccchhhHhhHHHHHHhhCCCCccCCCCCcce
Confidence                               000123589999999999975     78999999999999999999999999877765544


Q ss_pred             HHHHh-CCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC---CHHHHhcCcCCCCCCCCccc
Q psy9090         119 FQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       119 ~~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---s~~ell~hp~f~~~~~~~~~  175 (488)
                      .+++. ...-.+....++|+++.+||.++. .+++.|+   .++++..||||+.++|..+.
T Consensus       881 ~kv~nw~~~l~~~~~~~ls~e~~~li~kLc-~sad~RLGkng~d~vKaHpfFkgIDfsslR  940 (1034)
T KOG0608|consen  881 YKVINWRNFLHIPYQGNLSKEALDLIQKLC-CSADSRLGKNGADQVKAHPFFKGIDFSSLR  940 (1034)
T ss_pred             eeeeehhhccccccccccCHHHHHHHHHHh-cChhhhhcccchhhhhcCccccccchHhhh
Confidence            33321 111223334678999999999875 5688887   46789999999999998743

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.95  E-value=1.8e-27  Score=232.89  Aligned_cols=162  Identities=26%  Similarity=0.447  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++|++||||+|+||+++.++.+||+|||++..............+++.|+|||++.+. 
T Consensus        97 l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  175 (284)
T cd07860          97 IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC-  175 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecC-
Confidence            4678899999999999999999999999999999999999999999999987654332223344578899999988652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-----------------C---------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-----------------L---------YRASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-----------------~---------~~~~~  134 (488)
                         ..++.++|+||||+++|+|+||+.||..........++......+                 .         .....
T Consensus       176 ---~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd07860         176 ---KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPP  252 (284)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHccc
Confidence               346788999999999999999999998776555444443211000                 0         00124


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      +++.++++|.+||..||.+|||+.+++.||||
T Consensus       253 ~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         253 LDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             CCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            57888999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0607|consensus

Probab=99.95  E-value=1.4e-27  Score=223.58  Aligned_cols=172  Identities=27%  Similarity=0.453  Sum_probs=133.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCccccccc-------cCccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANT-------FDKKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~~~~-------~~~~~~~~gt~~y   70 (488)
                      |+|.++..+++.|+.||.+||.+||.||||||+|||-.+..+   ||||||.+.....-.       .....+.+|+..|
T Consensus       173 F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEf  252 (463)
T KOG0607|consen  173 FNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEF  252 (463)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhh
Confidence            589999999999999999999999999999999999976654   899999887543211       1223466899999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--------------HHHHHHHHhCCCCCCCC--CCC
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--------------TRALFQIVRNPPPGLYR--ASN  134 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--------------~~~~~~~~~~~~~~~~~--~~~  134 (488)
                      ||||+..--......|+.++|.||||+|+|.|++|.+||.+.-.              ...++.-++.....++.  ...
T Consensus       253 MAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWah  332 (463)
T KOG0607|consen  253 MAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAH  332 (463)
T ss_pred             cchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHH
Confidence            99998754333346789999999999999999999999965311              12233333333222221  223


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      +|.++++||..+|..++.+|.++.++++|||+.....+
T Consensus       333 IS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~~e  370 (463)
T KOG0607|consen  333 ISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCAPE  370 (463)
T ss_pred             hhHHHHHHHHHHHhccHHhhhhhhhccCCccccccchh
Confidence            58999999999999999999999999999999887554

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=1.1e-27  Score=253.08  Aligned_cols=165  Identities=24%  Similarity=0.434  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      ..+++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+++....... ......||+.|+|||++.+   
T Consensus       266 ~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~---  342 (501)
T PHA03210        266 LKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAG---  342 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcC---
Confidence            456788999999999999999999999999999999999999999999976543211 2234679999999999976   


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCC-CCCC--ChHHHHHHHHhCCC------C-----------------------CC
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPP-FEDM--HPTRALFQIVRNPP------P-----------------------GL  129 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~P-f~~~--~~~~~~~~~~~~~~------~-----------------------~~  129 (488)
                        ..|+.++|||||||++|+|++|..| |...  .+...+.+++....      +                       ..
T Consensus       343 --~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~  420 (501)
T PHA03210        343 --DGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPL  420 (501)
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhH
Confidence              5688999999999999999998754 4322  22223333222100      0                       00


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .....++..+.++|.+||..||.+|||+.++|.||||......
T Consensus       421 ~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~~~  463 (501)
T PHA03210        421 IRNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEEEE  463 (501)
T ss_pred             HHhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCCch
Confidence            0112346677889999999999999999999999999876543

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=2.6e-27  Score=230.23  Aligned_cols=159  Identities=26%  Similarity=0.504  Sum_probs=129.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||+.|++||||||+||+++.++ .++|+|||++......    ....+++.|+|||++.+ 
T Consensus       106 l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~-  180 (267)
T PHA03390        106 LSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP----SCYDGTLDYFSPEKIKG-  180 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC----ccCCCCCcccChhhhcC-
Confidence            57899999999999999999999999999999999999998 9999999998755332    23468899999999975 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH-HHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-H
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA-LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-M  157 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-~  157 (488)
                          ..++.++|+||+|+++|+|++|..||........ ...+..........+..+++.+.++|.+||+.+|.+||+ +
T Consensus       181 ----~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  256 (267)
T PHA03390        181 ----HNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNY  256 (267)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchH
Confidence                5678899999999999999999999975543221 111211112222334568999999999999999999996 6


Q ss_pred             HHHhcCcCCCC
Q psy9090         158 SELLEHPFITS  168 (488)
Q Consensus       158 ~ell~hp~f~~  168 (488)
                      +++++||||+.
T Consensus       257 ~~~l~h~~~~~  267 (267)
T PHA03390        257 NEIIKHPFLKI  267 (267)
T ss_pred             HHHhcCCcccC
Confidence            99999999963

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.95  E-value=2.6e-27  Score=237.82  Aligned_cols=162  Identities=31%  Similarity=0.670  Sum_probs=128.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||+. +++||||||+|||++.++.+||+|||++......  ......|++.|+|||++.+ 
T Consensus       100 ~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~-  176 (333)
T cd06650         100 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQG-  176 (333)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh--ccccCCCCccccCHHHhcC-
Confidence            46788899999999999999985 7999999999999999999999999998755332  2234578999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHH---------------------------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ---------------------------------------  120 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~---------------------------------------  120 (488)
                          ..++.++|+|||||++|+|++|+.||...........                                       
T Consensus       177 ----~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (333)
T cd06650         177 ----THYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIF  252 (333)
T ss_pred             ----CCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHH
Confidence                5688899999999999999999999976543222110                                       


Q ss_pred             -----HHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         121 -----IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       121 -----~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                           +.....+.. ....++.++++||.+||..||++|||+.+++.||||+...
T Consensus       253 ~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         253 ELLDYIVNEPPPKL-PSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             HHHHHHhcCCCccC-CCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCc
Confidence                 011111111 1123578899999999999999999999999999998643

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.95  E-value=3.5e-27  Score=230.42  Aligned_cols=160  Identities=22%  Similarity=0.431  Sum_probs=128.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++|++||||+|+||+++. +.+||+|||+++..... .......+++.|+|||.+... 
T Consensus        97 ~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~-  173 (282)
T cd07831          97 LPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSK-PPYTEYISTRWYRAPECLLTD-  173 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccC-CCcCCCCCCcccCChhHhhcC-
Confidence            478899999999999999999999999999999999999 99999999998765432 222344678999999987542 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCC------------CCC-----------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPP------------GLY-----------RASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~------------~~~-----------~~~~  134 (488)
                         ..++.++|+||+||++|+|++|.+||.+.+.......+..   .+.+            ...           ....
T Consensus       174 ---~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (282)
T cd07831         174 ---GYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPN  250 (282)
T ss_pred             ---CCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHccc
Confidence               4467899999999999999999999988765444333321   0000            000           0124


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .+..+.++|.+||.++|++||+++++++||||
T Consensus       251 ~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         251 ASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             ccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            57899999999999999999999999999997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.95  E-value=3.7e-27  Score=227.45  Aligned_cols=165  Identities=30%  Similarity=0.552  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--------ccccccCCCcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--------KKKTFLGSPSWMA   72 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--------~~~~~~gt~~y~a   72 (488)
                      +++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++........        ......+++.|+|
T Consensus        90 ~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (265)
T cd05579          90 LDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIA  169 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccC
Confidence            47889999999999999999999999999999999999999999999999875432211        2234467889999


Q ss_pred             chhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          73 PEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        73 PE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      ||.+..     ..++.++|+||||+++|++++|..||...........+..... ..+....++..+.+++.+||..+|.
T Consensus       170 Pe~~~~-----~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~  243 (265)
T cd05579         170 PEVILG-----QGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKI-EWPEDVEVSDEAIDLISKLLVPDPE  243 (265)
T ss_pred             HHHhcC-----CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCc-CCCccccCCHHHHHHHHHHhcCCHh
Confidence            999875     4477899999999999999999999988776665555544222 2222223589999999999999999


Q ss_pred             CCCCH---HHHhcCcCCCCCCC
Q psy9090         153 HRPYM---SELLEHPFITSLPE  171 (488)
Q Consensus       153 ~Rps~---~ell~hp~f~~~~~  171 (488)
                      +|||+   .++++||||++++|
T Consensus       244 ~Rpt~~~~~~~l~~~~~~~~~~  265 (265)
T cd05579         244 KRLGAKSIEEIKNHPFFKGIDW  265 (265)
T ss_pred             hcCCCccHHHHhcCccccCCCC
Confidence            99999   99999999998876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.95  E-value=3.6e-27  Score=237.05  Aligned_cols=167  Identities=31%  Similarity=0.546  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++........   ......|++.|+|||.+.
T Consensus       103 l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (336)
T cd07849         103 LSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIML  182 (336)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhh
Confidence            57889999999999999999999999999999999999999999999999876533211   122346889999999875


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCC--------------------CCCC----
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPP--------------------PGLY----  130 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~--------------------~~~~----  130 (488)
                      +.    ..++.++|+||+||++|+|++|++||.+.........+..   .+.                    ....    
T Consensus       183 ~~----~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (336)
T cd07849         183 NS----KGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWN  258 (336)
T ss_pred             CC----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHH
Confidence            42    4578899999999999999999999977654332222111   000                    0000    


Q ss_pred             -CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         131 -RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       131 -~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                       .....++.+.++|.+||..+|++|||+.++++||||+....
T Consensus       259 ~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~  300 (336)
T cd07849         259 KLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHD  300 (336)
T ss_pred             HHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCC
Confidence             01235788999999999999999999999999999997643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.95  E-value=2.3e-27  Score=231.95  Aligned_cols=169  Identities=38%  Similarity=0.696  Sum_probs=134.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++ +++||||||+||+++.++.+||+|||++...... .......++..|+|||.+.+.
T Consensus       100 ~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~  178 (283)
T cd06617         100 IPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS-VAKTIDAGCKPYMAPERINPE  178 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccc-cccccccCCccccChhhcCCc
Confidence            47889999999999999999997 9999999999999999999999999998765432 122335688899999988642


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      . ....++.++|+||+||++|+|++|+.||.... ....+........+.. ....+|.++.++|.+||..+|.+||++.
T Consensus       179 ~-~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~  256 (283)
T cd06617         179 L-NQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQL-PAEKFSPEFQDFVNKCLKKNYKERPNYP  256 (283)
T ss_pred             c-cccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCC-CccccCHHHHHHHHHHccCChhhCcCHH
Confidence            1 12457889999999999999999999996532 2333444444333322 2345789999999999999999999999


Q ss_pred             HHhcCcCCCCCCCC
Q psy9090         159 ELLEHPFITSLPEN  172 (488)
Q Consensus       159 ell~hp~f~~~~~~  172 (488)
                      ++++||||.....+
T Consensus       257 ~il~~~~~~~~~~~  270 (283)
T cd06617         257 ELLQHPFFELHLSK  270 (283)
T ss_pred             HHhcCchhhhcccc
Confidence            99999999875443

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.95  E-value=3.9e-27  Score=228.16  Aligned_cols=161  Identities=35%  Similarity=0.696  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc------cCccccccCCCccccch
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT------FDKKKTFLGSPSWMAPE   74 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~------~~~~~~~~gt~~y~aPE   74 (488)
                      +++..++.++.|++.||+|||+.|++|+||+|+||+++.++.++|+|||++......      ........|++.|+|||
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe  178 (265)
T cd06631          99 LPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPE  178 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChh
Confidence            468889999999999999999999999999999999999999999999988754211      11123446889999999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      ++.+     ..++.++|+||||+++|+|++|..||...........+..........+..++..+.++|++||..+|.+|
T Consensus       179 ~~~~-----~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  253 (265)
T cd06631         179 VINE-----SGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHER  253 (265)
T ss_pred             hhcC-----CCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccC
Confidence            9876     56788999999999999999999999876655444443332111112345678999999999999999999


Q ss_pred             CCHHHHhcCcCC
Q psy9090         155 PYMSELLEHPFI  166 (488)
Q Consensus       155 ps~~ell~hp~f  166 (488)
                      |++.++++||||
T Consensus       254 p~~~~~l~~~~~  265 (265)
T cd06631         254 PSALQLLRHDFL  265 (265)
T ss_pred             CCHHHHhcCCCC
Confidence            999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.95  E-value=2.9e-27  Score=239.38  Aligned_cols=162  Identities=25%  Similarity=0.505  Sum_probs=129.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++|++||||||+||+++.++.+||+|||++...... .......+++.|+|||.+.+  
T Consensus       115 l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  191 (353)
T cd07850         115 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG--  191 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCC-CCCCCCcccccccCHHHHhC--
Confidence            467889999999999999999999999999999999999999999999999765432 22334568899999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---------------------C------------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---------------------P------------  127 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---------------------~------------  127 (488)
                         ..++.++|+|||||++|+|++|+.||...+.......+.....                     +            
T Consensus       192 ---~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
T cd07850         192 ---MGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFP  268 (353)
T ss_pred             ---CCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCc
Confidence               5688999999999999999999999987654433333221000                     0            


Q ss_pred             CCCC-------CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         128 GLYR-------ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       128 ~~~~-------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                      ....       +...++.++++|.+||..||++|||+.++|.||||+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         269 DVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             ccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence            0000       1123567899999999999999999999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.95  E-value=2.7e-27  Score=232.91  Aligned_cols=162  Identities=27%  Similarity=0.477  Sum_probs=130.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++|++|+||||+||+++.++.++|+|||++..............+++.|+|||.+.+. 
T Consensus       103 l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  181 (293)
T cd07843         103 FLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGA-  181 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCC-
Confidence            5788999999999999999999999999999999999999999999999987665432333445678899999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC----------------------------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP----------------------------GLYRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~----------------------------~~~~~  132 (488)
                         ..++.++|+||+|+++|+|++|.+||..........++......                            ....+
T Consensus       182 ---~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (293)
T cd07843         182 ---KEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFP  258 (293)
T ss_pred             ---ccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhcccc
Confidence               34678999999999999999999999877655444433221000                            00011


Q ss_pred             CC-cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         133 SN-WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       133 ~~-~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .. +++.+.++|++||..+|++|||+.+++.||||
T Consensus       259 ~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         259 ALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             ccCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            11 57889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.95  E-value=3.7e-27  Score=227.01  Aligned_cols=159  Identities=31%  Similarity=0.612  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++..............|++.|+|||++.+  
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~--  175 (256)
T cd08218          98 FPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICEN--  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCC--
Confidence            467888999999999999999999999999999999999999999999998765443222334568889999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+||++|+|++|..||...........+..+..+.  .+..++.++.++|.+||..+|.+||++.++
T Consensus       176 ---~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~v  250 (256)
T cd08218         176 ---RPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPP--VSSHYSYDLRNLVSQLFKRNPRDRPSVNSI  250 (256)
T ss_pred             ---CCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCC--CcccCCHHHHHHHHHHhhCChhhCcCHHHH
Confidence               557789999999999999999999998877666666666554333  245678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++||||
T Consensus       251 l~~~~~  256 (256)
T cd08218         251 LEKNFI  256 (256)
T ss_pred             hhCcCC
Confidence            999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG0671|consensus

Probab=99.95  E-value=6.1e-28  Score=231.43  Aligned_cols=162  Identities=25%  Similarity=0.474  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc--------------------CCcEEEEecCCccccccccCc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK--------------------DGEVKIVDFGLSRETANTFDK   60 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~--------------------~~~vkL~Dfg~a~~~~~~~~~   60 (488)
                      ++-..++.+.+|+++++++||+.+++|.||||+|||+.+                    +..|+++|||.++....   .
T Consensus       189 fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e---~  265 (415)
T KOG0671|consen  189 FPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHE---H  265 (415)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceecc---C
Confidence            466889999999999999999999999999999999842                    33589999999976543   3


Q ss_pred             cccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH---HHHHHHhCCCCCCCC------
Q psy9090          61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR---ALFQIVRNPPPGLYR------  131 (488)
Q Consensus        61 ~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~---~~~~~~~~~~~~~~~------  131 (488)
                      ..+.+.|..|+|||++.+     -+++..|||||+||||+|+.+|...|......+   .+.+++. +.|....      
T Consensus       266 hs~iVsTRHYRAPEViLg-----LGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlG-p~P~~mi~r~~~~  339 (415)
T KOG0671|consen  266 HSTIVSTRHYRAPEVILG-----LGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILG-PIPSRMIKKTRKE  339 (415)
T ss_pred             cceeeeccccCCchheec-----cCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhC-CCcHHHhhhhhhH
Confidence            467789999999999998     789999999999999999999999998766544   3333332 1111000      


Q ss_pred             -------------------------CC----------CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         132 -------------------------AS----------NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       132 -------------------------~~----------~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                                               +.          .--.++.+||++||..||.+|+|+.|+|.||||+....
T Consensus       340 Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~~  414 (415)
T KOG0671|consen  340 KYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARLTP  414 (415)
T ss_pred             hhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcCCC
Confidence                                     00          00134689999999999999999999999999987643

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=3.8e-27  Score=235.97  Aligned_cols=167  Identities=32%  Similarity=0.635  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-------ccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.++++||+.+........       ......++..|+||
T Consensus        98 l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  177 (327)
T cd08227          98 MSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSP  177 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccCh
Confidence            57888999999999999999999999999999999999999999999986543221101       11223567789999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC------------------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL------------------------  129 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~------------------------  129 (488)
                      |++.+.   ...|+.++||||+||++|+|++|..||.................+..                        
T Consensus       178 E~~~~~---~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (327)
T cd08227         178 EVLQQN---LQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGL  254 (327)
T ss_pred             HHhhcc---cCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCC
Confidence            998652   13588999999999999999999999976554333322221111000                        


Q ss_pred             -------------------CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         130 -------------------YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       130 -------------------~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                                         .....+++.+.+||.+||..||++|||++++++||||+.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~~  314 (327)
T cd08227         255 GESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK  314 (327)
T ss_pred             CcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhcc
Confidence                               00123467899999999999999999999999999998753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.95  E-value=5.4e-27  Score=231.30  Aligned_cols=167  Identities=26%  Similarity=0.396  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++..............+++.|+|||.+.+. 
T Consensus        99 ~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  177 (298)
T cd07841          99 LTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGA-  177 (298)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCC-
Confidence            5788999999999999999999999999999999999999999999999987665433333344567899999998542 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---C-------------------C---CCCCCCc
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---P-------------------G---LYRASNW  135 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---~-------------------~---~~~~~~~  135 (488)
                         ..++.++|+||+||++|+|++|.+||.+........++.....   .                   .   .......
T Consensus       178 ---~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
T cd07841         178 ---RHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAA  254 (298)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccc
Confidence               4578899999999999999999988877665544444332100   0                   0   0011234


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         136 SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       136 s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      +..+.++|.+||..+|++|||+.+++.||||++.+.
T Consensus       255 ~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~  290 (298)
T cd07841         255 SDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPA  290 (298)
T ss_pred             cHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCC
Confidence            788999999999999999999999999999998553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.94  E-value=4.6e-27  Score=228.00  Aligned_cols=160  Identities=36%  Similarity=0.719  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||+++++||||+|+||+++.++.++|+|||++.......   .......++..|+|||.+.
T Consensus       103 l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (266)
T cd06651         103 LTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVIS  182 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhC
Confidence            4678889999999999999999999999999999999999999999999987543211   1122345788999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      +     ..++.++|+||+||++|+|++|+.||..........+.......+ ..+...++.+++++ +||..+|++||++
T Consensus       183 ~-----~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li-~~~~~~p~~Rp~~  255 (266)
T cd06651         183 G-----EGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNP-QLPSHISEHARDFL-GCIFVEARHRPSA  255 (266)
T ss_pred             C-----CCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCC-CCchhcCHHHHHHH-HHhcCChhhCcCH
Confidence            5     567889999999999999999999998776555555444332221 12345688899999 5777899999999


Q ss_pred             HHHhcCcCCC
Q psy9090         158 SELLEHPFIT  167 (488)
Q Consensus       158 ~ell~hp~f~  167 (488)
                      +++++||||+
T Consensus       256 ~eil~hp~~~  265 (266)
T cd06651         256 EELLRHPFAQ  265 (266)
T ss_pred             HHHhcCcccc
Confidence            9999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.94  E-value=5e-27  Score=229.67  Aligned_cols=162  Identities=25%  Similarity=0.471  Sum_probs=130.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||+++++||||+|+||+++.++.++|+|||++..............+++.|+|||++.+. 
T Consensus        96 ~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  174 (283)
T cd07835          96 LDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGS-  174 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecC-
Confidence            4688999999999999999999999999999999999999999999999987554322222334568899999988642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC--------------------------CCCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP--------------------------PGLYRASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~  134 (488)
                         ..++.++|+||+|+++|+|++|.+||..........++.+...                          ........
T Consensus       175 ---~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T cd07835         175 ---RQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPN  251 (283)
T ss_pred             ---cccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCC
Confidence               3468899999999999999999999987766554444332100                          00001245


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ++..+.++|.+||+.+|.+|||+++++.||||
T Consensus       252 ~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         252 LDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             CCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            67889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.9e-27  Score=228.97  Aligned_cols=166  Identities=36%  Similarity=0.770  Sum_probs=135.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++..............|++.|+|||.+.++ 
T Consensus        98 l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  176 (277)
T cd06917          98 IAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEG-  176 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccC-
Confidence            5788999999999999999999999999999999999999999999999987665443334455788999999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...........+.....+. .....++.++.+++.+||..||++||++.++
T Consensus       177 ---~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~i  252 (277)
T cd06917         177 ---KYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPR-LEDNGYSKLLREFVAACLDEEPKERLSAEEL  252 (277)
T ss_pred             ---CccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCC-CCcccCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence               456889999999999999999999998766544333222222222 2223478899999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      +.||||+....
T Consensus       253 l~~~~~~~~~~  263 (277)
T cd06917         253 LKSKWIKAHSK  263 (277)
T ss_pred             hhChHhhcccc
Confidence            99999987543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.94  E-value=7.8e-27  Score=231.28  Aligned_cols=168  Identities=28%  Similarity=0.449  Sum_probs=136.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---------------Ccccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---------------DKKKTFL   65 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---------------~~~~~~~   65 (488)
                      +++..+..++.|++.||+|||++|++||||||+||+++.++.++|+|||+++......               .......
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (305)
T cd05609          98 LPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVC  177 (305)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCc
Confidence            4788899999999999999999999999999999999999999999999876321000               0111245


Q ss_pred             CCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHH
Q psy9090          66 GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        66 gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~  145 (488)
                      +++.|+|||.+..     ..++.++|+|||||++|+|++|..||.+........+......+........+..+.++|.+
T Consensus       178 ~~~~y~aPE~~~~-----~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  252 (305)
T cd05609         178 GTPEYIAPEVILR-----QGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISR  252 (305)
T ss_pred             cCccccCchhccC-----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHH
Confidence            7889999999865     56789999999999999999999999887766666655544322222233578999999999


Q ss_pred             hcccCCCCCCC---HHHHhcCcCCCCCCCCc
Q psy9090         146 CLEKNPEHRPY---MSELLEHPFITSLPEND  173 (488)
Q Consensus       146 ~L~~dP~~Rps---~~ell~hp~f~~~~~~~  173 (488)
                      ||..+|++||+   +.++++||||...++..
T Consensus       253 ~l~~~P~~R~~~~~~~~ll~~~~~~~~~~~~  283 (305)
T cd05609         253 LLRQNPLERLGTGGAFEVKQHRFFLGLDWNG  283 (305)
T ss_pred             HhccChhhccCccCHHHHHhCccccCCCHHH
Confidence            99999999997   79999999999887764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.94  E-value=7e-27  Score=225.53  Aligned_cols=159  Identities=31%  Similarity=0.534  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH-----HCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLH-----ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH-----~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~   75 (488)
                      +++..++.++.||+.||.|||     +.+++|+||+|+||+++.++.+||+|||++..............+++.|+|||.
T Consensus       102 l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~  181 (265)
T cd08217         102 IEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQ  181 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhh
Confidence            467889999999999999999     899999999999999999999999999999876544332345578999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +..     ..++.++|+||||+++|+|++|..||...........+.....+.  .+..++..+.+++.+||..+|++||
T Consensus       182 ~~~-----~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~p~~Rp  254 (265)
T cd08217         182 LNH-----MSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRR--IPYRYSSELNEVIKSMLNVDPDKRP  254 (265)
T ss_pred             hcC-----CCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCC--CccccCHHHHHHHHHHccCCcccCC
Confidence            876     457889999999999999999999998876544444444333222  3457789999999999999999999


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      ++.++++|||+
T Consensus       255 ~~~~il~~~~~  265 (265)
T cd08217         255 STEELLQLPLI  265 (265)
T ss_pred             CHHHHhhCCCC
Confidence            99999999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.94  E-value=3.7e-27  Score=228.57  Aligned_cols=163  Identities=43%  Similarity=0.880  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++||+||||+|+||+++.++.++|+|||++..............|++.|+|||.+....
T Consensus       103 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  182 (267)
T cd06646         103 LSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEK  182 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHccccc
Confidence            46788999999999999999999999999999999999999999999999986643333334557889999999885321


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                        ...++.++|+||+||++|+|++|..||....+......+...  ..+.......++..+.++|++||..+|++|||++
T Consensus       183 --~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~  260 (267)
T cd06646         183 --NGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAE  260 (267)
T ss_pred             --CCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHH
Confidence              145778999999999999999999999765543332222111  1111122345789999999999999999999999


Q ss_pred             HHhcCcC
Q psy9090         159 ELLEHPF  165 (488)
Q Consensus       159 ell~hp~  165 (488)
                      ++++|+|
T Consensus       261 ~il~~l~  267 (267)
T cd06646         261 RLLTHLF  267 (267)
T ss_pred             HHhcCCC
Confidence            9999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.94  E-value=3.4e-27  Score=228.33  Aligned_cols=161  Identities=39%  Similarity=0.784  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.||+|||+ .|++|+||||+||+++.++.++|+|||.+.......  .....++..|+|||.+.+ 
T Consensus        97 ~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~y~~PE~~~~-  173 (265)
T cd06605          97 IPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL--AKTFVGTSSYMAPERIQG-  173 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHH--hhcccCChhccCHHHHcC-
Confidence            4678899999999999999999 999999999999999999999999999987654321  122678899999999876 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-----hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-----PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                          ..++.++|+||+|+++|+|++|..||....     .......+.....+.. ....++..++++|.+||..+|++|
T Consensus       174 ----~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~R  248 (265)
T cd06605         174 ----NDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRL-PSGKFSPDFQDFVNLCLIKDPRER  248 (265)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCC-ChhhcCHHHHHHHHHHcCCCchhC
Confidence                568899999999999999999999996542     2233333333333322 222378999999999999999999


Q ss_pred             CCHHHHhcCcCCCCC
Q psy9090         155 PYMSELLEHPFITSL  169 (488)
Q Consensus       155 ps~~ell~hp~f~~~  169 (488)
                      ||+.+++.||||+..
T Consensus       249 pt~~~ll~~~~~~~~  263 (265)
T cd06605         249 PSYKELLEHPFIKKY  263 (265)
T ss_pred             cCHHHHhhCchhhcc
Confidence            999999999999764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.94  E-value=4.6e-27  Score=235.39  Aligned_cols=168  Identities=29%  Similarity=0.493  Sum_probs=135.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.++|+|||++.......   .......+++.|+|||.+.
T Consensus       100 l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  179 (330)
T cd07834         100 LTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLL  179 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeee
Confidence            5788899999999999999999999999999999999999999999999988665432   1233456788999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---CCC-------------------------C
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---PPG-------------------------L  129 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---~~~-------------------------~  129 (488)
                      +.    ..++.++|+||+|+++|+|++|.+||.+.........+....   .+.                         .
T Consensus       180 ~~----~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (330)
T cd07834         180 SS----SRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLS  255 (330)
T ss_pred             cc----cCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhH
Confidence            62    267889999999999999999999998877655444433211   000                         0


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ......++.+.++|.+||..+|.+|||+.+++.||||+++...
T Consensus       256 ~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         256 KLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             HhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence            0012357889999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.94  E-value=6.2e-27  Score=229.59  Aligned_cols=166  Identities=41%  Similarity=0.881  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++..............+++.|+|||.+.+  
T Consensus       113 l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~--  190 (286)
T cd06614         113 MNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKR--  190 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcC--
Confidence            467889999999999999999999999999999999999999999999988655433223334567889999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||||+++|+|++|..||....+......+.....+....+..++..++++|.+||..+|.+|||+.++
T Consensus       191 ---~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i  267 (286)
T cd06614         191 ---KDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEEL  267 (286)
T ss_pred             ---CCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHH
Confidence               56788999999999999999999999887766655555554444444444588999999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||+..-+
T Consensus       268 l~~~~~~~~~~  278 (286)
T cd06614         268 LQHPFLKKACP  278 (286)
T ss_pred             hhChHhhccCc
Confidence            99999988543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.94  E-value=6.5e-27  Score=230.37  Aligned_cols=166  Identities=27%  Similarity=0.454  Sum_probs=131.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++..++.++.||+.||+|||++|++||||+|+||+++. ++.+||+|||++..............+++.|+|||.+.+. 
T Consensus       100 ~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-  178 (294)
T PLN00009        100 NPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS-  178 (294)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCC-
Confidence            56788899999999999999999999999999999985 5579999999987554332223344678899999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCC-----------------C------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGL-----------------Y------RASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~-----------------~------~~~~  134 (488)
                         ..++.++|+||+||++|+|++|.+||..........++...   +....                 .      ....
T Consensus       179 ---~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (294)
T PLN00009        179 ---RHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPT  255 (294)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcC
Confidence               45788999999999999999999999877665555544321   10000                 0      1234


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      .++.+++++.+||..+|++||++.++++||||.+++.
T Consensus       256 ~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~~  292 (294)
T PLN00009        256 LEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLGD  292 (294)
T ss_pred             CChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHhc
Confidence            6788999999999999999999999999999987653

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.94  E-value=6.8e-27  Score=228.82  Aligned_cols=163  Identities=28%  Similarity=0.479  Sum_probs=130.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++........ ......++..|+|||.+.+.
T Consensus        96 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  175 (286)
T cd07832          96 LPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGA  175 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeecc
Confidence            47889999999999999999999999999999999999999999999999876543311 12345688999999998642


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC---------------------C------CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG---------------------L------YRA  132 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~---------------------~------~~~  132 (488)
                          ..++.++||||+|+++|+|++|.+||.+.........+.......                     .      ...
T Consensus       176 ----~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (286)
T cd07832         176 ----RKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIF  251 (286)
T ss_pred             ----ccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhC
Confidence                456889999999999999999999997766554444433211000                     0      001


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT  167 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  167 (488)
                      ...+..+.++|++||..+|.+|||++++++||||.
T Consensus       252 ~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         252 PDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             CCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            24568899999999999999999999999999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.94  E-value=6.8e-27  Score=230.43  Aligned_cols=165  Identities=36%  Similarity=0.704  Sum_probs=136.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.+|+|||++|++||||+|+||+++.++.++|+|||++..............|++.|+|||.+.+  
T Consensus       113 ~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~--  190 (292)
T cd06657         113 MNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR--  190 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcC--
Confidence            467889999999999999999999999999999999999999999999988755433222334568899999998865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...........+....++........+..+.+++.+||..+|.+||++.++
T Consensus       191 ---~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~l  267 (292)
T cd06657         191 ---LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  267 (292)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHH
Confidence               45788999999999999999999999877655544444333333333345678999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      +.||||....
T Consensus       268 l~~~~~~~~~  277 (292)
T cd06657         268 LKHPFLAKAG  277 (292)
T ss_pred             hcChHHhccC
Confidence            9999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.94  E-value=9.1e-27  Score=222.56  Aligned_cols=159  Identities=50%  Similarity=1.035  Sum_probs=134.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.+|.+||++|++||||+|+||+++.++.++|+|||.+........ .....++..|+|||.+.+  
T Consensus        95 ~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~PE~~~~--  171 (253)
T cd05122          95 LTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA-RNTMVGTPYWMAPEVING--  171 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc-ccceecCCcccCHHHHcC--
Confidence            47888999999999999999999999999999999999999999999999876654321 345578899999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||.................+.......++..+.++|.+||..||++|||+.++
T Consensus       172 ---~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~  248 (253)
T cd05122         172 ---KPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQL  248 (253)
T ss_pred             ---CCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHH
Confidence               44788999999999999999999999887655555555544444444444568999999999999999999999999


Q ss_pred             hcCcC
Q psy9090         161 LEHPF  165 (488)
Q Consensus       161 l~hp~  165 (488)
                      ++|||
T Consensus       249 l~~~~  253 (253)
T cd05122         249 LKHPF  253 (253)
T ss_pred             hcCCC
Confidence            99998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=7.1e-27  Score=235.00  Aligned_cols=167  Identities=30%  Similarity=0.523  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||+++++||||||+||+++.++.+||+|||++..............++..|+|||.+... 
T Consensus       105 l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  183 (337)
T cd07858         105 LSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNC-  183 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcC-
Confidence            5788999999999999999999999999999999999999999999999987654332223345678899999988642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCC------------------------CC-CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPP------------------------PG-LYRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~------------------------~~-~~~~  132 (488)
                         ..++.++|+|||||++|+|++|++||.+.+.......+..   .+.                        +. ....
T Consensus       184 ---~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (337)
T cd07858         184 ---SEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLF  260 (337)
T ss_pred             ---CCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHc
Confidence               3478899999999999999999999977653322221110   000                        00 0012


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ...++.++++|++||..+|++|||++++++||||..+..
T Consensus       261 ~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~  299 (337)
T cd07858         261 PHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHD  299 (337)
T ss_pred             ccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcC
Confidence            356889999999999999999999999999999987643

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=5.9e-27  Score=231.04  Aligned_cols=156  Identities=19%  Similarity=0.326  Sum_probs=123.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-------CccccccCCCccccch
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-------DKKKTFLGSPSWMAPE   74 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-------~~~~~~~gt~~y~aPE   74 (488)
                      ++..++.++.||+.||+|||+++|+||||||+|||++.++.++|+|||+++......       .......||+.|+|||
T Consensus       124 ~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape  203 (294)
T PHA02882        124 NKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLD  203 (294)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHH
Confidence            567788999999999999999999999999999999999999999999987653211       1122346999999999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHH-----HHHhCCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF-----QIVRNPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      ++.+     ..++.++||||+||++|+|++|.+||.+........     ................++.+.++++.|+..
T Consensus       204 ~~~~-----~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (294)
T PHA02882        204 AHNG-----ACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKL  278 (294)
T ss_pred             HhCC-----CCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhC
Confidence            9876     668999999999999999999999997763221111     111111111122345688999999999999


Q ss_pred             CCCCCCCHHHHhc
Q psy9090         150 NPEHRPYMSELLE  162 (488)
Q Consensus       150 dP~~Rps~~ell~  162 (488)
                      +|++||++.++++
T Consensus       279 ~~~~rp~~~~l~~  291 (294)
T PHA02882        279 SYEEKPDYDALIK  291 (294)
T ss_pred             CCCCCCCHHHHHH
Confidence            9999999999875

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=8.6e-27  Score=229.16  Aligned_cols=162  Identities=23%  Similarity=0.500  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+|+||||+||+++.++.++|+|||+++.............+++.|+|||.+.+. 
T Consensus       100 ~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  178 (291)
T cd07870         100 LHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGA-  178 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecC-
Confidence            3577889999999999999999999999999999999999999999999987543322223344678999999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHh---CCC--------------CCC------------C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVR---NPP--------------PGL------------Y  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~---~~~--------------~~~------------~  130 (488)
                         ..++.++|+|||||++|+|++|..||...... +.+.++..   .+.              +..            .
T Consensus       179 ---~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (291)
T cd07870         179 ---TDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVW  255 (291)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhc
Confidence               34778999999999999999999999765432 22222111   000              000            0


Q ss_pred             CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       131 ~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .....+..+.+++.+||..||.+|||+.+++.||||
T Consensus       256 ~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         256 KRLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             cccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            001125688999999999999999999999999997

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.94  E-value=4.2e-27  Score=231.97  Aligned_cols=165  Identities=41%  Similarity=0.782  Sum_probs=135.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||.|||++|++||||+|+||+++.++.++|+|||++..............+++.|+|||.+..  
T Consensus       112 l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~--  189 (293)
T cd06647         112 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR--  189 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhcc--
Confidence            467888999999999999999999999999999999999999999999988755433233334568889999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|++++|..||...........+.....+....+...+..++++|.+||..+|++||++.++
T Consensus       190 ---~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i  266 (293)
T cd06647         190 ---KAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  266 (293)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence               55788999999999999999999999876654443333333333333445568889999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      +.||||+...
T Consensus       267 l~h~~~~~~~  276 (293)
T cd06647         267 LQHPFLKIAK  276 (293)
T ss_pred             hcCHHHhcCc
Confidence            9999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.94  E-value=8.2e-27  Score=228.15  Aligned_cols=156  Identities=24%  Similarity=0.438  Sum_probs=129.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||++|++||||||+||+++.++.++|+|||++.......  .......+++.|+|||.+.+
T Consensus       121 l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  200 (283)
T cd05048         121 LDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILY  200 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhcc
Confidence            4567889999999999999999999999999999999999999999999987543221  12233456788999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |..||.+....+....+.....+.  .+..+++++.+|+.+||+.+|.+||++
T Consensus       201 -----~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~c~~~~p~~Rp~~  273 (283)
T cd05048         201 -----GKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLP--CPEDCPARVYALMIECWNEIPARRPRF  273 (283)
T ss_pred             -----CcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCC--CcccCCHHHHHHHHHHccCChhhCcCH
Confidence                 568899999999999999998 999998887766655555443332  356789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       274 ~~i~~~  279 (283)
T cd05048         274 KDIHTR  279 (283)
T ss_pred             HHHHHH
Confidence            999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=6.5e-27  Score=235.82  Aligned_cols=164  Identities=29%  Similarity=0.538  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||+|||++|++||||||+||+++.++.++|+|||+++....   ......+++.|+|||.+.+. 
T Consensus       114 ~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~---~~~~~~~~~~y~aPE~~~~~-  189 (342)
T cd07879         114 LSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADA---EMTGYVVTRWYRAPEVILNW-  189 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCC---CCCCceeeecccChhhhcCc-
Confidence            46888999999999999999999999999999999999999999999999875432   22344678899999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC----------------------CCCCC------C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP----------------------PGLYR------A  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~----------------------~~~~~------~  132 (488)
                         ..++.++|+|||||++|+|++|+.||.+.........+.....                      +....      .
T Consensus       190 ---~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T cd07879         190 ---MHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLF  266 (342)
T ss_pred             ---cccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHh
Confidence               3478899999999999999999999987765444433322100                      00000      1


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      +..++.+.+||.+||..||++||++.+++.||||+.+..
T Consensus       267 ~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         267 PKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             cCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            245778999999999999999999999999999998754

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.94  E-value=9.6e-27  Score=225.93  Aligned_cols=160  Identities=38%  Similarity=0.751  Sum_probs=126.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++..+..++.||+.||+|||++||+||||||+||+++. ++.++|+|||++..............|++.|+|||.+... 
T Consensus       106 ~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  184 (268)
T cd06624         106 NEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKG-  184 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccc-
Confidence            56778899999999999999999999999999999976 6789999999987554322223344688999999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH-HHHH-HhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA-LFQI-VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~-~~~~-~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                        ...++.++|+||+|+++|+|++|.+||........ .... .....+  ..+...++++++++.+||..+|.+|||+.
T Consensus       185 --~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  260 (268)
T cd06624         185 --PRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHP--EIPESLSAEAKNFILRCFEPDPDKRASAH  260 (268)
T ss_pred             --cccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCC--CCCcccCHHHHHHHHHHcCCCchhCCCHH
Confidence              13477899999999999999999999975433221 1111 111111  12456789999999999999999999999


Q ss_pred             HHhcCcCC
Q psy9090         159 ELLEHPFI  166 (488)
Q Consensus       159 ell~hp~f  166 (488)
                      +++.||||
T Consensus       261 ~ll~~~~~  268 (268)
T cd06624         261 DLLQDPFL  268 (268)
T ss_pred             HHHhCCCC
Confidence            99999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0665|consensus

Probab=99.94  E-value=4e-27  Score=221.06  Aligned_cols=160  Identities=29%  Similarity=0.507  Sum_probs=132.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      ..+.+++++.|++.|++|||+.||+||||||+||++..+..+|+.|||+++..... -..+..+.|..|.|||++.+   
T Consensus       116 DH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~-~~mtpyVvtRyyrapevil~---  191 (369)
T KOG0665|consen  116 DHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD-FMMTPYVVTRYYRAPEVILG---  191 (369)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcc-cccCchhheeeccCchheec---
Confidence            46788999999999999999999999999999999999999999999999865543 34566788999999999987   


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---C------------------CC--------CCCC
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---P------------------PG--------LYRA  132 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---~------------------~~--------~~~~  132 (488)
                        ..|.+.+||||+||++.||++|...|.+.....++.++....   .                  +.        ..+.
T Consensus       192 --~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD  269 (369)
T KOG0665|consen  192 --MGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPD  269 (369)
T ss_pred             --cCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCc
Confidence              558999999999999999999999999877666666554310   0                  00        0000


Q ss_pred             C----------CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCC
Q psy9090         133 S----------NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT  167 (488)
Q Consensus       133 ~----------~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  167 (488)
                      .          .-+..+++|+.+||..||++|.|++++|+|||++
T Consensus       270 ~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  270 SLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             ccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence            0          1134578999999999999999999999999998

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=1.3e-26  Score=230.49  Aligned_cols=167  Identities=33%  Similarity=0.659  Sum_probs=129.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-------ccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||+++|+||||||+||+++.++.+||+|||.+........       ......++..|+||
T Consensus        98 ~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  177 (314)
T cd08216          98 LPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSP  177 (314)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCH
Confidence            46788999999999999999999999999999999999999999999998765432111       12234567789999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-------------------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-------------------------  128 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-------------------------  128 (488)
                      |++...   ...++.++|+||+||++|+|++|..||.................+.                         
T Consensus       178 E~~~~~---~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
T cd08216         178 EVLQQN---LQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPN  254 (314)
T ss_pred             HHhcCC---CCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccc
Confidence            998652   1357889999999999999999999998765544333322211100                         


Q ss_pred             ------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         129 ------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       129 ------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                            ......++.++.+|+.+||..||++|||++++++||||+.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         255 NRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhc
Confidence                  000112346788999999999999999999999999998764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=1.5e-26  Score=222.76  Aligned_cols=159  Identities=29%  Similarity=0.597  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.+|.|||+.|++|+||+|+||+++.++.+||+|||++..............+++.|+|||.+.+  
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~--  175 (256)
T cd08221          98 FEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQG--  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCC--
Confidence            467889999999999999999999999999999999999999999999998765443323345678999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...........+.....+.  .+...+..+.++|.+||..+|.+||++.++
T Consensus       176 ---~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~R~s~~~l  250 (256)
T cd08221         176 ---VKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTP--VVSVYSSELISLVHSLLQQDPEKRPTADEV  250 (256)
T ss_pred             ---CCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCC--CccccCHHHHHHHHHHcccCcccCCCHHHH
Confidence               457789999999999999999999998877766666665543332  235678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++|||+
T Consensus       251 l~~~~l  256 (256)
T cd08221         251 LDQPLL  256 (256)
T ss_pred             hhCcCC
Confidence            999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=1.7e-26  Score=229.12  Aligned_cols=161  Identities=40%  Similarity=0.815  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.||+.||.|||++|++||||+|+||+++.++.++|+|||++.....    .....+++.|+|||++.+..
T Consensus       112 l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~  187 (307)
T cd06607         112 LQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP----ANSFVGTPYWMAPEVILAMD  187 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCC----CCCccCCccccCceeeeccC
Confidence            47888999999999999999999999999999999999999999999998865432    23456888999999885321


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ...++.++||||+|+++|+|++|.+||...........+.....+.. .+..++..++++|.+||..+|++||++.++
T Consensus       188 --~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  264 (307)
T cd06607         188 --EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTL-SSNDWSDYFRNFVDSCLQKIPQDRPSSEEL  264 (307)
T ss_pred             --CCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCC-CchhhCHHHHHHHHHHhcCChhhCcCHHHH
Confidence              14578899999999999999999999988776665555544433332 344688999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      +.||||..
T Consensus       265 l~~~~~~~  272 (307)
T cd06607         265 LKHRFVLR  272 (307)
T ss_pred             hcChhhcc
Confidence            99999975

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.94  E-value=4.8e-27  Score=229.25  Aligned_cols=163  Identities=46%  Similarity=0.904  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++..............++..|+|||.+.+  
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  175 (277)
T cd06642          98 LEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQ--  175 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCc--
Confidence            467889999999999999999999999999999999999999999999998765443222334568889999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+||++|+|++|..||....+......+.....+.  .....+..+.++|.+||..+|.+||++.++
T Consensus       176 ---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  250 (277)
T cd06642         176 ---SAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPT--LEGQYSKPFKEFVEACLNKDPRFRPTAKEL  250 (277)
T ss_pred             ---CCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCC--CCcccCHHHHHHHHHHccCCcccCcCHHHH
Confidence               567889999999999999999999998766544444333332222  234568899999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      +.||||....
T Consensus       251 l~~~~~~~~~  260 (277)
T cd06642         251 LKHKFITRYT  260 (277)
T ss_pred             HHhHHHHHHh
Confidence            9999997644

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=1.6e-26  Score=226.53  Aligned_cols=167  Identities=35%  Similarity=0.669  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||.|||+ +|++||||||+||+++.++.++|+|||++......  ......+++.|+|||.+.+.
T Consensus        99 ~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~  176 (286)
T cd06622          99 IPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS--LAKTNIGCQSYMAPERIKSG  176 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC--ccccCCCccCccCcchhcCC
Confidence            5788999999999999999997 59999999999999999999999999998765332  23345688899999998653


Q ss_pred             cc-CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHH---HHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          80 HK-EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ---IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        80 ~~-~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .. ....++.++|+||+||++|+|++|..||...........   +.....+.  .+..+++++.++|.+||..+|++||
T Consensus       177 ~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp  254 (286)
T cd06622         177 GPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPT--LPSGYSDDAQDFVAKCLNKIPNRRP  254 (286)
T ss_pred             CCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCC--CCcccCHHHHHHHHHHcccCcccCC
Confidence            21 123468899999999999999999999976544332222   22222222  3455899999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPE  171 (488)
Q Consensus       156 s~~ell~hp~f~~~~~  171 (488)
                      ++.++++||||.....
T Consensus       255 ~~~~l~~~~~~~~~~~  270 (286)
T cd06622         255 TYAQLLEHPWLVKYKN  270 (286)
T ss_pred             CHHHHhcChhhhhccC
Confidence            9999999999987543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=228.28  Aligned_cols=162  Identities=25%  Similarity=0.524  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||+++.............+++.|+|||++.+. 
T Consensus       100 ~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  178 (291)
T cd07844         100 LSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGS-  178 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcC-
Confidence            4678899999999999999999999999999999999999999999999986543222222233568899999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-hHHHHHHHHh---CCCCCC------------------------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVR---NPPPGL------------------------YRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-~~~~~~~~~~---~~~~~~------------------------~~~  132 (488)
                         ..++.++|+||+|+++|+|++|..||.+.. .......+..   .+.+..                        ...
T Consensus       179 ---~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (291)
T cd07844         179 ---TEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHA  255 (291)
T ss_pred             ---cccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhC
Confidence               457889999999999999999999997655 2222221111   000000                        000


Q ss_pred             CCcC--HHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         133 SNWS--QHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       133 ~~~s--~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..++  ..+.+++.+||..+|.+|||+.++++||||
T Consensus       256 ~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         256 PRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             cCCCCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            1233  788899999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.94  E-value=9.6e-27  Score=224.76  Aligned_cols=163  Identities=40%  Similarity=0.779  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||+ .|++||||+|+||+++.++.++|+|||++..............++..|+|||.+.. 
T Consensus        96 l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~-  174 (264)
T cd06623          96 IPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQG-  174 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCC-
Confidence            5788999999999999999999 99999999999999999999999999998766544333335568899999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC---hHHHHHHHHhCCCCCCCCCCC-cCHHHHHHHHHhcccCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---PTRALFQIVRNPPPGLYRASN-WSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~~-~s~~~~~li~~~L~~dP~~Rp  155 (488)
                          ..++.++|+||||+++|+|++|..||....   .......+.....+.  .+.. ++..+.++|.+||..+|++||
T Consensus       175 ----~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~R~  248 (264)
T cd06623         175 ----ESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPS--LPAEEFSPEFRDFISACLQKDPKKRP  248 (264)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCC--CCcccCCHHHHHHHHHHccCChhhCC
Confidence                467889999999999999999999997763   333344444333322  2334 789999999999999999999


Q ss_pred             CHHHHhcCcCCCCCC
Q psy9090         156 YMSELLEHPFITSLP  170 (488)
Q Consensus       156 s~~ell~hp~f~~~~  170 (488)
                      |+.++++|||++..+
T Consensus       249 ~~~~ll~~~~~~~~~  263 (264)
T cd06623         249 SAAELLQHPFIKKAD  263 (264)
T ss_pred             CHHHHHhCHHHHhcc
Confidence            999999999998653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0584|consensus

Probab=99.94  E-value=2.8e-27  Score=239.71  Aligned_cols=160  Identities=28%  Similarity=0.538  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      ++.+.++.|++||+.||.|||++.  |+|||||.+||+|+. .|.|||+|+|+|+.....  .....+|||.|||||+..
T Consensus       140 vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s--~aksvIGTPEFMAPEmYE  217 (632)
T KOG0584|consen  140 VNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS--HAKSVIGTPEFMAPEMYE  217 (632)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcc--ccceeccCccccChHHHh
Confidence            356789999999999999999997  999999999999974 689999999999876653  334579999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                            ..|+..+||||||+++.||+|+..||........+++.+.....+.....--.+++++||.+||.. .+.|||+
T Consensus       218 ------E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa  290 (632)
T KOG0584|consen  218 ------ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSA  290 (632)
T ss_pred             ------hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCH
Confidence                  579999999999999999999999998887777776666543333222233378999999999999 9999999


Q ss_pred             HHHhcCcCCCCC
Q psy9090         158 SELLEHPFITSL  169 (488)
Q Consensus       158 ~ell~hp~f~~~  169 (488)
                      .++|.||||..-
T Consensus       291 ~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  291 KELLKDPFFDED  302 (632)
T ss_pred             HHHhhChhhccc
Confidence            999999999864

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.94  E-value=1.1e-26  Score=230.06  Aligned_cols=162  Identities=27%  Similarity=0.522  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-----------ccccccCCCc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-----------KKKTFLGSPS   69 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-----------~~~~~~gt~~   69 (488)
                      +++..++.++.||++||+|||++|++||||||+||+++.++.++|+|||++........           ......+++.
T Consensus       112 ~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (311)
T cd07866         112 LTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRW  191 (311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccC
Confidence            57889999999999999999999999999999999999999999999999875432211           1123356888


Q ss_pred             cccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCC----------C------
Q psy9090          70 WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGL----------Y------  130 (488)
Q Consensus        70 y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~----------~------  130 (488)
                      |+|||.+.+.    ..++.++|+||+||++|+|++|++||.+.........+...   +.+..          .      
T Consensus       192 y~aPE~~~~~----~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (311)
T cd07866         192 YRPPELLLGE----RRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFT  267 (311)
T ss_pred             cCChHHhhCC----CccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCC
Confidence            9999988642    45788999999999999999999999877665444433321   00000          0      


Q ss_pred             --------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         131 --------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       131 --------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                              ....+++.+.++|.+||..+|.+|||+.+++.||||
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         268 NYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             CCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence                    012345678899999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.94  E-value=1.4e-26  Score=228.36  Aligned_cols=168  Identities=35%  Similarity=0.647  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||+ .||+||||+|+||+++.++.+||+|||++...... .......+++.|+|||.+.+.
T Consensus       111 l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~  189 (296)
T cd06618         111 IPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDS-KAKTRSAGCAAYMAPERIDPP  189 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCC-CcccCCCCCccccCHhhcCCC
Confidence            4678889999999999999997 69999999999999999999999999998765432 122234578899999998652


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      .. ...++.++|+||||+++|+|++|+.||..... .+.+.++.....+.......++.++.+|+.+||..+|.+||+++
T Consensus       190 ~~-~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~  268 (296)
T cd06618         190 DP-NPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYR  268 (296)
T ss_pred             CC-ccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence            11 13478899999999999999999999976433 23334444443333333345789999999999999999999999


Q ss_pred             HHhcCcCCCCCC
Q psy9090         159 ELLEHPFITSLP  170 (488)
Q Consensus       159 ell~hp~f~~~~  170 (488)
                      +++.||||....
T Consensus       269 ~il~~~~~~~~~  280 (296)
T cd06618         269 ELLQHPFIRRYE  280 (296)
T ss_pred             HHhcChhhhccc
Confidence            999999998643

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=1.8e-26  Score=222.03  Aligned_cols=158  Identities=28%  Similarity=0.543  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.+|+|||++|++|+||+|+||+++.++ .++|+|||++...... .......+++.|+|||.+.+ 
T Consensus        98 ~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~-  175 (256)
T cd08220          98 LDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK-SKAYTVVGTPCYISPELCEG-  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC-ccccccccCCcccCchhccC-
Confidence            46788999999999999999999999999999999998654 5899999998765443 22334568899999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.++|+||+|+++|+|++|..||...........+.......  .+..+++.+.+++.+||..+|.+|||+.+
T Consensus       176 ----~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  249 (256)
T cd08220         176 ----KPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAP--ISDRYSPDLRQLILSMLNLDPSKRPQLSQ  249 (256)
T ss_pred             ----CCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCC--CCCCcCHHHHHHHHHHccCChhhCCCHHH
Confidence                557889999999999999999999998877666555555443332  34567999999999999999999999999


Q ss_pred             HhcCcCC
Q psy9090         160 LLEHPFI  166 (488)
Q Consensus       160 ll~hp~f  166 (488)
                      +++||||
T Consensus       250 ll~~p~~  256 (256)
T cd08220         250 IMAQPIC  256 (256)
T ss_pred             HhhCCCC
Confidence            9999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.94  E-value=1.5e-26  Score=226.54  Aligned_cols=162  Identities=30%  Similarity=0.586  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++..............++..|+|||++.+. 
T Consensus        97 ~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  175 (286)
T cd07846          97 LDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGD-  175 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccc-
Confidence            4678999999999999999999999999999999999999999999999987654432333345678899999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---------------------CCCC-------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---------------------PPGL-------YRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---------------------~~~~-------~~~  132 (488)
                         ..++.++|+||+|+++|+|++|.+||...........+....                     .+..       ...
T Consensus       176 ---~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (286)
T cd07846         176 ---TKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRF  252 (286)
T ss_pred             ---cccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhC
Confidence               346789999999999999999999997665443333322100                     0000       012


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..++..+.+|+.+||..+|++||++.++++||||
T Consensus       253 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         253 PKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             CCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            3568889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0662|consensus

Probab=99.94  E-value=9.2e-27  Score=201.81  Aligned_cols=165  Identities=25%  Similarity=0.491  Sum_probs=137.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |..+.++.++.|++.||.+||++++.|||+||.|.||+.+|.+||+|||+++-++-+....+..+-|.+|.+|.++.+. 
T Consensus        98 ~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfga-  176 (292)
T KOG0662|consen   98 LDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA-  176 (292)
T ss_pred             CCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeee-
Confidence            4577899999999999999999999999999999999999999999999999877665555666789999999999874 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhC---C----CCCC------------CCCC-------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN---P----PPGL------------YRAS-------  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~---~----~~~~------------~~~~-------  133 (488)
                         .-|+.+.|+||.||++.|+.. |++.|.+.+...++.++.+.   +    .|..            +...       
T Consensus       177 ---kly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp  253 (292)
T KOG0662|consen  177 ---KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVP  253 (292)
T ss_pred             ---ehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhh
Confidence               669999999999999999975 88889998877777776541   1    1111            1111       


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      .++..-++|++++|.-+|.+|++++.+++||||.+.
T Consensus       254 ~lns~grdllqkll~cnp~qrisaeaalqhpyf~d~  289 (292)
T KOG0662|consen  254 KLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSDF  289 (292)
T ss_pred             hhcchhHHHHHHHhccCcccccCHHHHhcCcccccc
Confidence            123445899999999999999999999999999865

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=1.4e-26  Score=229.24  Aligned_cols=162  Identities=25%  Similarity=0.476  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||+|||++|++|+||||+||+++.++.+||+|||++........    ......++..|+|||.+
T Consensus       116 ~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  195 (310)
T cd07865         116 FTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELL  195 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHh
Confidence            47889999999999999999999999999999999999999999999999876533211    11234577889999988


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCC-----------------------
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLY-----------------------  130 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~-----------------------  130 (488)
                      .+.    ..++.++|+||+|+++|+|++|.+||.+.........+..   ..++...                       
T Consensus       196 ~~~----~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (310)
T cd07865         196 LGE----RDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVK  271 (310)
T ss_pred             cCC----cccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhH
Confidence            652    3467899999999999999999999987665433322211   1110000                       


Q ss_pred             ---CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         131 ---RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       131 ---~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                         .+...+..++++|.+||..||.+|||++++++||||
T Consensus       272 ~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         272 ERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             HhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence               011125677899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.94  E-value=1.9e-26  Score=221.34  Aligned_cols=159  Identities=31%  Similarity=0.624  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++..............|++.|+|||.+..  
T Consensus       100 ~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~--  177 (258)
T cd08215         100 FPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQN--  177 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhcc--
Confidence            467889999999999999999999999999999999999999999999998766544333445578899999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++++|++|..||.................+.  .+..++..+.+++.+||..+|++|||+.++
T Consensus       178 ---~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l  252 (258)
T cd08215         178 ---KPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPP--IPSQYSSELRNLVSSLLQKDPEERPSIAQI  252 (258)
T ss_pred             ---CCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence               557889999999999999999999998877666665555544333  244678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++||||
T Consensus       253 l~~~~~  258 (258)
T cd08215         253 LQSPFI  258 (258)
T ss_pred             hcCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=1e-26  Score=227.13  Aligned_cols=164  Identities=46%  Similarity=0.896  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.||+|||+++++|+||+|+||+++.++.++|+|||++..............++..|+|||++.+  
T Consensus        98 l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~--  175 (277)
T cd06640          98 FDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQ--  175 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhcc--
Confidence            467888999999999999999999999999999999999999999999998765443223334567889999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+|||||++|+|++|.+||....+......+.....+.  .+...+..+.+++.+||..+|++||++.++
T Consensus       176 ---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  250 (277)
T cd06640         176 ---SAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPT--LTGEFSKPFKEFIDACLNKDPSFRPTAKEL  250 (277)
T ss_pred             ---CCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCC--CchhhhHHHHHHHHHHcccCcccCcCHHHH
Confidence               567889999999999999999999998777655444433332222  234567889999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      +.||||.....
T Consensus       251 l~~~~~~~~~~  261 (277)
T cd06640         251 LKHKFIVKNAK  261 (277)
T ss_pred             HhChHhhhcch
Confidence            99999976544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.94  E-value=1.6e-26  Score=225.68  Aligned_cols=162  Identities=28%  Similarity=0.535  Sum_probs=130.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||.+..............++..|+|||.+.+. 
T Consensus        95 ~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~-  173 (283)
T cd05118          95 LPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGD-  173 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcC-
Confidence            4678899999999999999999999999999999999999999999999987665432222334678899999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---CC------------------------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---PG------------------------LYRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---~~------------------------~~~~~  133 (488)
                         ..++.++|+||+|+++|+|++|+.||...+.......+.....   +.                        .....
T Consensus       174 ---~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T cd05118         174 ---KGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFP  250 (283)
T ss_pred             ---CCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhh
Confidence               3678899999999999999999999987776554444332100   00                        00112


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..+.+++++|.+||..||.+||++.+++.||||
T Consensus       251 ~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         251 NASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             hhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            357889999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=1.6e-26  Score=232.10  Aligned_cols=168  Identities=27%  Similarity=0.516  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++........    ......|+..|+|||.+
T Consensus       104 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (334)
T cd07855         104 LTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELL  183 (334)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHh
Confidence            57889999999999999999999999999999999999999999999999876533211    11244788999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CC-------------------CCC-CC---
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NP-------------------PPG-LY---  130 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~-------------------~~~-~~---  130 (488)
                      .+.    ..++.++|+||+||++|+|++|++||.+......+..+..   .+                   .+. ..   
T Consensus       184 ~~~----~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (334)
T cd07855         184 LSL----PEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPW  259 (334)
T ss_pred             cCC----cccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCH
Confidence            642    3578899999999999999999999977654333222111   00                   000 00   


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                        .....++.++++|++||+.+|.+|||+.+++.||||.+.+..
T Consensus       260 ~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~  303 (334)
T cd07855         260 SKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDP  303 (334)
T ss_pred             HHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCC
Confidence              013458899999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.94  E-value=2.1e-26  Score=225.37  Aligned_cols=160  Identities=28%  Similarity=0.475  Sum_probs=130.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||+++++|+||+|+||+++.++.++|+|||++...... .......+++.|+|||++.+  
T Consensus       104 l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~~~PE~~~~--  180 (287)
T cd07838         104 LPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE-MALTSVVVTLWYRAPEVLLQ--  180 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccCC-cccccccccccccChHHhcc--
Confidence            578899999999999999999999999999999999999999999999998765432 22233457889999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC------------------CCC------CCCCcC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP------------------GLY------RASNWS  136 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~------------------~~~------~~~~~s  136 (488)
                         ..++.++|+||+||++|+|++|.+||.+....+...++......                  ...      .....+
T Consensus       181 ---~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (287)
T cd07838         181 ---SSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEIC  257 (287)
T ss_pred             ---CCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhh
Confidence               56788999999999999999999999887766555544431100                  000      011345


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      +.+.++|.+||..||.+||++.+++.||||
T Consensus       258 ~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         258 EEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             HHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            778899999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.94  E-value=1.6e-26  Score=232.99  Aligned_cols=163  Identities=30%  Similarity=0.536  Sum_probs=132.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++......   .....+++.|+|||.+.+. 
T Consensus       115 l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~-  190 (343)
T cd07851         115 LSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIMLNW-  190 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEcccccccccccc---ccCCcccccccCHHHHhCC-
Confidence            578899999999999999999999999999999999999999999999998765432   3344678899999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC----------------------CC------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP----------------------GL------YRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~----------------------~~------~~~  132 (488)
                         ..++.++|+|||||++|+|++|+.||.+.........+......                      ..      ...
T Consensus       191 ---~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T cd07851         191 ---MHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVF  267 (343)
T ss_pred             ---CCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHh
Confidence               35778999999999999999999999877665444443321100                      00      001


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      ...++.+.++|.+||..+|++|||+.++++||||....
T Consensus       268 ~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~  305 (343)
T cd07851         268 SGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYH  305 (343)
T ss_pred             ccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccC
Confidence            23588999999999999999999999999999998753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG4721|consensus

Probab=99.94  E-value=2e-27  Score=236.94  Aligned_cols=156  Identities=29%  Similarity=0.601  Sum_probs=134.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      +......|..+|+.|++|||.+.|||||||.-||||..+..|||+|||.++..... ...-.++||..|||||+++.   
T Consensus       210 tp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~-STkMSFaGTVaWMAPEvIrn---  285 (904)
T KOG4721|consen  210 TPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK-STKMSFAGTVAWMAPEVIRN---  285 (904)
T ss_pred             CHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh-hhhhhhhhhHhhhCHHHhhc---
Confidence            45667789999999999999999999999999999999999999999999877654 44557899999999999987   


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHh
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL  161 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell  161 (488)
                        .+.++|+|||||||+||||+||..||.+.....++..+= ...-.++.|..+++.++=||+.||+-.|..|||+.+++
T Consensus       286 --ePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVG-sNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil  362 (904)
T KOG4721|consen  286 --EPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVG-SNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQIL  362 (904)
T ss_pred             --CCcccccceehhHHHHHHHHhcCCCccccchheeEEecc-CCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHH
Confidence              789999999999999999999999998876554433322 22234456778899999999999999999999999999


Q ss_pred             cCc
Q psy9090         162 EHP  164 (488)
Q Consensus       162 ~hp  164 (488)
                      .|-
T Consensus       363 ~Hl  365 (904)
T KOG4721|consen  363 LHL  365 (904)
T ss_pred             HHH
Confidence            884

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.94  E-value=1.2e-26  Score=253.66  Aligned_cols=164  Identities=27%  Similarity=0.488  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-------CCeecccCCCCEEEcc-----------------CCcEEEEecCCcccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-------HVIHRDLRGSNVLLTK-----------------DGEVKIVDFGLSRETAN   56 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-------givHrDlkp~NILl~~-----------------~~~vkL~Dfg~a~~~~~   56 (488)
                      |++..++.|+.||+.||.|||+.       +||||||||+|||++.                 .+.+||+|||++.....
T Consensus       115 L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~  194 (1021)
T PTZ00266        115 IEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI  194 (1021)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccc
Confidence            57889999999999999999985       4999999999999964                 23489999999976543


Q ss_pred             ccCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcC
Q psy9090          57 TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWS  136 (488)
Q Consensus        57 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (488)
                      . .......||+.|+|||++.+.   ...++.++|||||||++|+|++|..||........+...+...+ .. .....+
T Consensus       195 ~-s~~~s~vGTp~YmAPEvL~ge---~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p-~l-pi~~~S  268 (1021)
T PTZ00266        195 E-SMAHSCVGTPYYWSPELLLHE---TKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGP-DL-PIKGKS  268 (1021)
T ss_pred             c-ccccccCCCccccCHHHHhcc---CCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCC-CC-CcCCCC
Confidence            2 223455799999999998642   14578899999999999999999999976655444444443321 11 224568


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      .++.+||..||..+|.+||++.++|.|||++.+.
T Consensus       269 ~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i~  302 (1021)
T PTZ00266        269 KELNILIKNLLNLSAKERPSALQCLGYQIIKNVG  302 (1021)
T ss_pred             HHHHHHHHHHhcCChhHCcCHHHHhccHHHhhcC
Confidence            9999999999999999999999999999998654

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.94  E-value=3.2e-26  Score=221.23  Aligned_cols=164  Identities=30%  Similarity=0.672  Sum_probs=130.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc----ccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK----KTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~----~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.|++.||.|||++|++|+||+|+||+++.++.+||+|||++..........    ....+++.|+|||.+
T Consensus        96 ~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~  175 (264)
T cd06626          96 LDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVI  175 (264)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhc
Confidence            4678899999999999999999999999999999999999999999999987654332211    134678899999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+..  ...++.++|+||+|+++|++++|..||..... ......+.....+..+.....++.+.++|.+||..+|.+||
T Consensus       176 ~~~~--~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~  253 (264)
T cd06626         176 TGGK--GKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRP  253 (264)
T ss_pred             cCCC--CCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCC
Confidence            7631  12378899999999999999999999976533 23333333333333333334589999999999999999999


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      |+.+++.|||+
T Consensus       254 ~~~~i~~~~~~  264 (264)
T cd06626         254 TASELLQHPFV  264 (264)
T ss_pred             CHHHHhcCCCC
Confidence            99999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.94  E-value=1.2e-26  Score=230.63  Aligned_cols=162  Identities=29%  Similarity=0.454  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc----CCcEEEEecCCccccccccC---ccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK----DGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~----~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||+++|+||||||+||+++.    ++.+||+|||++........   ......+++.|+||
T Consensus       105 ~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  184 (316)
T cd07842         105 IPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAP  184 (316)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCH
Confidence            478899999999999999999999999999999999999    89999999999876543211   22344678899999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH---------HHHHHHh---CCC---------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR---------ALFQIVR---NPP---------------  126 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~---------~~~~~~~---~~~---------------  126 (488)
                      |++.+.    ..++.++|+|||||++|+|++|.+||.+.....         .+..++.   .+.               
T Consensus       185 E~~~~~----~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  260 (316)
T cd07842         185 ELLLGA----RHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDT  260 (316)
T ss_pred             HHHhCC----CCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchh
Confidence            988652    457889999999999999999999997554321         1111100   000               


Q ss_pred             ----CCCCCC------------CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         127 ----PGLYRA------------SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       127 ----~~~~~~------------~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                          ......            ...+..+.+++.+||..||++|||+.++++||||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         261 LMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             hhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence                000000            1456789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.94  E-value=1.7e-26  Score=225.83  Aligned_cols=162  Identities=28%  Similarity=0.513  Sum_probs=129.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||++|++||||||+||+++.++.++|+|||++..............+++.|+|||++.+. 
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-  175 (284)
T cd07836          97 LDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGS-  175 (284)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCC-
Confidence            4788999999999999999999999999999999999999999999999987554332223344678899999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCC--------------CCC---------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPP--------------GLY---------RASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~--------------~~~---------~~~~  134 (488)
                         ..++.++|+||+||++|+|++|++||.+....+...++...   +..              ..+         ....
T Consensus       176 ---~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd07836         176 ---RTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPH  252 (284)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhh
Confidence               35678999999999999999999999877655444433221   000              000         0123


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .++.++++|.+||+.+|.+||++.++++||||
T Consensus       253 ~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         253 ADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             cCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            47788999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.94  E-value=2.9e-26  Score=231.08  Aligned_cols=165  Identities=28%  Similarity=0.486  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccC---ccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++. ++.++|+|||++........   ......++..|+|||.+
T Consensus       111 l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  190 (342)
T cd07854         111 LSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLL  190 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHH
Confidence            578899999999999999999999999999999999974 55789999999875432211   11233578899999987


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC------------------------C---
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG------------------------L---  129 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~------------------------~---  129 (488)
                      ...    ..++.++|+|||||++|+|++|+.||.+.........+....+..                        .   
T Consensus       191 ~~~----~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T cd07854         191 LSP----NNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLR  266 (342)
T ss_pred             hCc----cccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHH
Confidence            542    457789999999999999999999998776555444433211000                        0   


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      ......+.++++||.+||..||.+|||+.+++.||||+.+
T Consensus       267 ~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~  306 (342)
T cd07854         267 DLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCY  306 (342)
T ss_pred             HHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccc
Confidence            0112467889999999999999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG4645|consensus

Probab=99.94  E-value=2.5e-27  Score=255.56  Aligned_cols=166  Identities=30%  Similarity=0.600  Sum_probs=138.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----CccccccCCCccccchhhc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----~~~~~~~gt~~y~aPE~l~   77 (488)
                      +|...+.+..|++.|+.|||++|||||||||.||+++.+|.+|++|||.|.......    .......|||.|||||++.
T Consensus      1332 dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit 1411 (1509)
T KOG4645|consen 1332 DEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVIT 1411 (1509)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhc
Confidence            466778999999999999999999999999999999999999999999998775442    1224558999999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +...  .+...+.|||||||++.||+||+.||...+. ..+++++-.+..|..  |..+|++.++||..||..||++|++
T Consensus      1412 ~t~~--kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~--P~~ls~~g~dFle~Cl~~dP~~Rw~ 1487 (1509)
T KOG4645|consen 1412 GTKG--KGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQI--PERLSSEGRDFLEHCLEQDPKMRWT 1487 (1509)
T ss_pred             cccc--CCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCC--chhhhHhHHHHHHHHHhcCchhhhH
Confidence            7422  4556789999999999999999999976544 455566655665654  4459999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCC
Q psy9090         157 MSELLEHPFITSLPE  171 (488)
Q Consensus       157 ~~ell~hp~f~~~~~  171 (488)
                      +.|+++|.|-+.-..
T Consensus      1488 ~~qlle~~f~~~~~d 1502 (1509)
T KOG4645|consen 1488 ASQLLEHAFGKSCTD 1502 (1509)
T ss_pred             HHHHHHhhccccccc
Confidence            999999999876443

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.94  E-value=2.9e-26  Score=224.65  Aligned_cols=162  Identities=27%  Similarity=0.562  Sum_probs=129.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++|++|+||+|+||+++.++.+||+|||++........ ......+++.|+|||++.+.
T Consensus        97 ~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~  176 (288)
T cd07833          97 LPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGD  176 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCC
Confidence            46789999999999999999999999999999999999999999999999876554322 33345678899999998762


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---C------------------CCC--------C
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---P------------------PGL--------Y  130 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---~------------------~~~--------~  130 (488)
                          ..++.++|+||+|+++|+|++|.+||.+.........+....   .                  +..        .
T Consensus       177 ----~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (288)
T cd07833         177 ----TNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERR  252 (288)
T ss_pred             ----CCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHh
Confidence                267889999999999999999999998765544333322100   0                  000        0


Q ss_pred             CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       131 ~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .+..++.++++||++||..+|++|||+++++.||||
T Consensus       253 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         253 YPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             cCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            112347889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.94  E-value=2.4e-26  Score=230.69  Aligned_cols=166  Identities=30%  Similarity=0.497  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.++|+|||+++.......    ......|++.|+|||.+
T Consensus       102 ~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  181 (332)
T cd07857         102 LTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIM  181 (332)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHH
Confidence            46889999999999999999999999999999999999999999999999876542211    12335789999999987


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-------------------------CCCCC--
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-------------------------PPPGL--  129 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-------------------------~~~~~--  129 (488)
                      .+.    ..++.++|+||+||++|+|++|.+||...........++..                         ..+..  
T Consensus       182 ~~~----~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (332)
T cd07857         182 LSF----QSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPF  257 (332)
T ss_pred             hCC----CCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcch
Confidence            642    45788999999999999999999999876543333322210                         00000  


Q ss_pred             -CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         130 -YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       130 -~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                       ......+..+.+++.+||..+|.+|||+.+++.|||++...
T Consensus       258 ~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~  299 (332)
T cd07857         258 ESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWH  299 (332)
T ss_pred             HhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhc
Confidence             01123478899999999999999999999999999997653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0666|consensus

Probab=99.94  E-value=1.3e-26  Score=216.46  Aligned_cols=166  Identities=31%  Similarity=0.497  Sum_probs=130.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC----CcEEEEecCCccccccccCc---cccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~----~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aP   73 (488)
                      ++...++.|+.||+.|+.|||++=|+||||||.|||+..+    |.|||+|+|+++.+..+...   ....+-|.+|+||
T Consensus       129 lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAP  208 (438)
T KOG0666|consen  129 LPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAP  208 (438)
T ss_pred             CCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecCh
Confidence            4677899999999999999999999999999999999877    89999999999987654332   2345678999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---------HHHHHHH---HhCCCCCCC----C------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---------TRALFQI---VRNPPPGLY----R------  131 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---------~~~~~~~---~~~~~~~~~----~------  131 (488)
                      |.+.+.    ..|+.++|+|++|||+.||+|-.+.|.+...         ..++.+|   +..+....+    .      
T Consensus       209 ELLLGa----~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~  284 (438)
T KOG0666|consen  209 ELLLGA----RHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQT  284 (438)
T ss_pred             HHhccc----ccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHH
Confidence            999984    6799999999999999999999998854321         1223333   322111110    0      


Q ss_pred             -----------C----------CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         132 -----------A----------SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       132 -----------~----------~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                                 +          ..-++...+|+.+||.+||.+|.|++++|+|+||+..+
T Consensus       285 ~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~  344 (438)
T KOG0666|consen  285 LLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDP  344 (438)
T ss_pred             HHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCC
Confidence                       0          01145578999999999999999999999999998753

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.94  E-value=3.1e-26  Score=220.45  Aligned_cols=159  Identities=29%  Similarity=0.606  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc-EEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~-vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||.|||+++++|+||||+||+++.++. ++|+|||.+..............|++.|+|||++.+ 
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~-  176 (257)
T cd08225          98 FSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQN-  176 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcC-
Confidence            467889999999999999999999999999999999998865 699999998766543333334568899999999865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.++|+||+|+++|+|++|..||..........++.....+.  ....++..++++|.+||..+|++|||+.+
T Consensus       177 ----~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  250 (257)
T cd08225         177 ----RPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAP--ISPNFSRDLRSLISQLFKVSPRDRPSITS  250 (257)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCC--CCCCCCHHHHHHHHHHhccChhhCcCHHH
Confidence                457889999999999999999999998776665555554443322  23457889999999999999999999999


Q ss_pred             HhcCcCC
Q psy9090         160 LLEHPFI  166 (488)
Q Consensus       160 ll~hp~f  166 (488)
                      ++.||||
T Consensus       251 ll~~~~~  257 (257)
T cd08225         251 ILKRPFL  257 (257)
T ss_pred             HhhCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.94  E-value=2.3e-26  Score=221.45  Aligned_cols=156  Identities=28%  Similarity=0.521  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++++.+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++..............|++.|+|||++.+  
T Consensus        97 ~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~--  174 (255)
T cd08219          97 FPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWEN--  174 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHcc--
Confidence            467889999999999999999999999999999999999999999999998765443233345678899999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...+.......+.......  .+..++..+.++|.+||..+|++|||+.++
T Consensus       175 ---~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i  249 (255)
T cd08219         175 ---MPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKP--LPSHYSYELRSLIKQMFKRNPRSRPSATTI  249 (255)
T ss_pred             ---CCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCC--CCcccCHHHHHHHHHHHhCCcccCCCHHHH
Confidence               567889999999999999999999998877665555554443322  245678999999999999999999999999


Q ss_pred             hcC
Q psy9090         161 LEH  163 (488)
Q Consensus       161 l~h  163 (488)
                      +..
T Consensus       250 l~~  252 (255)
T cd08219         250 LSR  252 (255)
T ss_pred             hhc
Confidence            864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.94  E-value=2.7e-26  Score=230.47  Aligned_cols=166  Identities=29%  Similarity=0.460  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccc--------------ccCccccccC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN--------------TFDKKKTFLG   66 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~--------------~~~~~~~~~g   66 (488)
                      +++..+..++.||+.||+|||++|++|+||+|+||+++.++.++|+|||++.....              .........+
T Consensus       116 ~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (335)
T PTZ00024        116 LTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVV  195 (335)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccceeeccccccccccccccccccccccccccc
Confidence            47888999999999999999999999999999999999999999999999875541              1111223356


Q ss_pred             CCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCC--------------
Q psy9090          67 SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGL--------------  129 (488)
Q Consensus        67 t~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~--------------  129 (488)
                      ++.|+|||.+.+.    ..++.++|+|||||++|+|++|.+||.+.........+..   .+....              
T Consensus       196 ~~~y~aPE~~~~~----~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  271 (335)
T PTZ00024        196 TLWYRAPELLMGA----EKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFT  271 (335)
T ss_pred             ccCCCCChhcccC----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccC
Confidence            7889999998652    3468899999999999999999999988776555444332   111100              


Q ss_pred             --------CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         130 --------YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       130 --------~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                              ......+..+.++|.+||..+|++|||+++++.||||+..+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~  320 (335)
T PTZ00024        272 PRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDP  320 (335)
T ss_pred             cCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCC
Confidence                    00124478899999999999999999999999999998754

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.94  E-value=4.5e-26  Score=223.87  Aligned_cols=163  Identities=26%  Similarity=0.481  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +...+..++.||+.||.|||++|++||||||+||+++.++.++|+|||+++.......  ......++..|+|||.+.+ 
T Consensus       117 ~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~-  195 (288)
T cd05061         117 TLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD-  195 (288)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhcc-
Confidence            3457788999999999999999999999999999999999999999999875432211  1122345678999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||+||++|+|++ |..||.+.........+.....+.  .+...++.+.+++.+||..+|++|||+.
T Consensus       196 ----~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~  269 (288)
T cd05061         196 ----GVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLD--QPDNCPERVTDLMRMCWQFNPKMRPTFL  269 (288)
T ss_pred             ----CCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence                567889999999999999998 789998877665555444433222  2345688999999999999999999999


Q ss_pred             HHhc------CcCCCCCCC
Q psy9090         159 ELLE------HPFITSLPE  171 (488)
Q Consensus       159 ell~------hp~f~~~~~  171 (488)
                      ++++      ||||..++|
T Consensus       270 ~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         270 EIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             HHHHHHHhhcCCCCCCCCC
Confidence            9986      999998876

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=3.5e-26  Score=221.59  Aligned_cols=160  Identities=32%  Similarity=0.666  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.......   .......|+..|+|||.+.
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (265)
T cd06652         103 LTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVIS  182 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhc
Confidence            4678889999999999999999999999999999999999999999999987543211   1123346888999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      +     ..++.++|+|||||++|+|++|+.||..........+....... ...+...+..+.++|.+|+. +|++||++
T Consensus       183 ~-----~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~  255 (265)
T cd06652         183 G-----EGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN-PVLPPHVSDHCRDFLKRIFV-EAKLRPSA  255 (265)
T ss_pred             C-----CCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCC-CCCchhhCHHHHHHHHHHhc-ChhhCCCH
Confidence            5     45788999999999999999999999877655555554433222 22345678889999999994 89999999


Q ss_pred             HHHhcCcCCC
Q psy9090         158 SELLEHPFIT  167 (488)
Q Consensus       158 ~ell~hp~f~  167 (488)
                      +++++|||+.
T Consensus       256 ~~il~~~~~~  265 (265)
T cd06652         256 DELLRHTFVH  265 (265)
T ss_pred             HHHhcCcccC
Confidence            9999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.94  E-value=5.8e-26  Score=226.03  Aligned_cols=163  Identities=39%  Similarity=0.816  Sum_probs=135.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.||+.+|.|||++|++|+||+|+||+++.++.++|+|||++....    ......|+..|+|||++....
T Consensus       118 l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~----~~~~~~~~~~y~aPE~~~~~~  193 (313)
T cd06633         118 LQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSS----PANSFVGTPYWMAPEVILAMD  193 (313)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccC----CCCCccccccccChhhccccC
Confidence            4678889999999999999999999999999999999999999999999886432    223457889999999985311


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ...++.++|+||+||++|+|++|.+||...........+.....+.. ....++..+++|+.+||+.+|.+||++.++
T Consensus       194 --~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~  270 (313)
T cd06633         194 --EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTL-QSNEWTDSFRGFVDYCLQKIPQERPASAEL  270 (313)
T ss_pred             --CCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC-CccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence              14578899999999999999999999988776666666555433332 234578889999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      +.||||...+
T Consensus       271 l~~~~~~~~~  280 (313)
T cd06633         271 LRHDFVRRDR  280 (313)
T ss_pred             hcCcccCCCc
Confidence            9999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.94  E-value=3.3e-26  Score=227.18  Aligned_cols=161  Identities=30%  Similarity=0.659  Sum_probs=128.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||.|||+ ++++||||||+|||++.++.++|+|||++......  ......|++.|+|||++.+ 
T Consensus        96 ~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~aPE~~~~-  172 (308)
T cd06615          96 IPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQG-  172 (308)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccccc--ccccCCCCcCccChhHhcC-
Confidence            4688899999999999999997 69999999999999999999999999998654332  2345578999999999865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---------------------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---------------------------------  126 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---------------------------------  126 (488)
                          ..++.++|+||+||++|+|++|..||........ ........                                 
T Consensus       173 ----~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (308)
T cd06615         173 ----THYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKEL-EAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIV  247 (308)
T ss_pred             ----CCCCccchHHHHHHHHHHHHhCCCCCCCcchhhH-HHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHh
Confidence                4578899999999999999999999965443221 11111100                                 


Q ss_pred             ---CCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         127 ---PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       127 ---~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                         ++......++.++++++.+||..+|++|||+.++++||||...
T Consensus       248 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         248 NEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA  293 (308)
T ss_pred             cCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhc
Confidence               0010112357889999999999999999999999999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.94  E-value=2.4e-26  Score=221.71  Aligned_cols=158  Identities=30%  Similarity=0.607  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||++||.|||++|++|+||+|+||+++.++.++|+|||++...... .......|+..|+|||.+..  
T Consensus        97 l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~--  173 (258)
T cd05578          97 FSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPD-TLTTSTSGTPGYMAPEVLCR--  173 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCC-ccccccCCChhhcCHHHHcc--
Confidence            568899999999999999999999999999999999999999999999998765433 12334568889999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH-
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM-  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~-  157 (488)
                         ..++.++|+||+|+++|+|++|..||.....  .....+....  .....+..++..+.++|.+||..+|.+||++ 
T Consensus       174 ---~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~  248 (258)
T cd05578         174 ---QGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET--ADVLYPATWSTEAIDAINKLLERDPQKRLGDN  248 (258)
T ss_pred             ---cCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc--ccccCcccCcHHHHHHHHHHccCChhHcCCcc
Confidence               4578899999999999999999999987663  2222233222  2222355678999999999999999999999 


Q ss_pred             -HHHhcCcCC
Q psy9090         158 -SELLEHPFI  166 (488)
Q Consensus       158 -~ell~hp~f  166 (488)
                       +++++||||
T Consensus       249 ~~~l~~~~~~  258 (258)
T cd05578         249 LKDLKNHPYF  258 (258)
T ss_pred             HHHHhcCCCC
Confidence             999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.94  E-value=1.1e-26  Score=211.20  Aligned_cols=149  Identities=25%  Similarity=0.375  Sum_probs=119.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||+++      ||+|||++.++.+|+  ||++......     ...||+.|+|||++.+  
T Consensus        14 l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~-----~~~g~~~y~aPE~~~~--   78 (176)
T smart00750       14 LNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTPE-----QSRVDPYFMAPEVIQG--   78 (176)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeeccc-----cCCCcccccChHHhcC--
Confidence            689999999999999999999998      999999999999999  9998765432     2368999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH-HHHHHhCCCCCC----CCCCCcCH--HHHHHHHHhcccCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA-LFQIVRNPPPGL----YRASNWSQ--HYVDFIAECLEKNPEH  153 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~-~~~~~~~~~~~~----~~~~~~s~--~~~~li~~~L~~dP~~  153 (488)
                         ..|+.++||||+||++|+|++|..||........ ...+.....+..    ..+..++.  .++++|.+||..+|.+
T Consensus        79 ---~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~  155 (176)
T smart00750       79 ---QSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQR  155 (176)
T ss_pred             ---CCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhccccc
Confidence               6788999999999999999999999976544322 222222211111    11222344  6899999999999999


Q ss_pred             CCCHHHHhcCcCCC
Q psy9090         154 RPYMSELLEHPFIT  167 (488)
Q Consensus       154 Rps~~ell~hp~f~  167 (488)
                      ||++.++++|+|+.
T Consensus       156 Rp~~~~ll~~~~~~  169 (176)
T smart00750      156 REAANHYLAHCRAL  169 (176)
T ss_pred             ccCHHHHHHHHHHH
Confidence            99999999999875

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.3e-26  Score=218.74  Aligned_cols=159  Identities=39%  Similarity=0.800  Sum_probs=134.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.+|.|||++|++||||+|+||+++.++.++|+|||++..............+++.|+|||.+.+  
T Consensus        96 l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~--  173 (254)
T cd06627          96 FPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEM--  173 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcC--
Confidence            478899999999999999999999999999999999999999999999999876544333344568899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||.................+.  .+...++.+.+++.+||..+|++|||+.++
T Consensus       174 ---~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~  248 (254)
T cd06627         174 ---SGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPP--LPEGISPELKDFLMQCFQKDPNLRPTAKQL  248 (254)
T ss_pred             ---CCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCC--CCCCCCHHHHHHHHHHHhCChhhCcCHHHH
Confidence               447889999999999999999999998776555555544333332  345678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      +.||||
T Consensus       249 l~~~~~  254 (254)
T cd06627         249 LKHPWI  254 (254)
T ss_pred             hcCCCC
Confidence            999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=4.2e-26  Score=223.23  Aligned_cols=156  Identities=25%  Similarity=0.419  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+++......  .......+++.|+|||.+.+
T Consensus       121 ~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  200 (283)
T cd05091         121 LEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMY  200 (283)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhc
Confidence            3567788999999999999999999999999999999999999999999987653221  11233456789999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+.......  .+..++..+.+++..||+.+|.+||++
T Consensus       201 -----~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~RP~~  273 (283)
T cd05091         201 -----GKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVLP--CPDDCPAWVYTLMLECWNEFPSRRPRF  273 (283)
T ss_pred             -----CCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHhCCCcccCCCH
Confidence                 567889999999999999998 889998877666555555443322  345789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++..
T Consensus       274 ~~i~~~  279 (283)
T cd05091         274 KDIHSR  279 (283)
T ss_pred             HHHHHH
Confidence            999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=4.9e-26  Score=223.62  Aligned_cols=155  Identities=27%  Similarity=0.484  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.++|+|||++.......  .......+++.|+|||++.+
T Consensus       117 l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  196 (288)
T cd05093         117 LTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMY  196 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhcc
Confidence            4788999999999999999999999999999999999999999999999987553221  11223345778999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |.+||...........+.....+.  .+..++..+.+++.+||..+|.+|||+
T Consensus       197 -----~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~  269 (288)
T cd05093         197 -----RKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQ--RPRTCPKEVYDLMLGCWQREPHMRLNI  269 (288)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHccCChhhCCCH
Confidence                 567889999999999999998 999998877666666665543322  244678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .+++.
T Consensus       270 ~~v~~  274 (288)
T cd05093         270 KEIHS  274 (288)
T ss_pred             HHHHH
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.94  E-value=4.5e-26  Score=221.49  Aligned_cols=156  Identities=24%  Similarity=0.431  Sum_probs=127.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.++|+|||+++.......  ......+++.|+|||.+..
T Consensus       109 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  188 (272)
T cd05075         109 LPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLAD  188 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccC
Confidence            46788999999999999999999999999999999999999999999999876543211  1122345678999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |..||.+.........+......  ..+..++..+.++|.+||..+|++|||+
T Consensus       189 -----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  261 (272)
T cd05075         189 -----RVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRL--KQPPDCLDGLYSLMSSCWLLNPKDRPSF  261 (272)
T ss_pred             -----CCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence                 568899999999999999999 89999877665555544443322  2345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       262 ~~l~~~  267 (272)
T cd05075         262 ETLRCE  267 (272)
T ss_pred             HHHHHH
Confidence            999863

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PHA02988 hypothetical protein; Provisional

Probab=99.94  E-value=3.8e-26  Score=224.06  Aligned_cols=155  Identities=17%  Similarity=0.253  Sum_probs=127.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.....++.|++.||.|||+ .+++||||||+|||++.++.+||+|||+++.....   .....|++.|+|||++.+.
T Consensus       119 ~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~  195 (283)
T PHA02988        119 LSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSP---PFKNVNFMVYFSYKMLNDI  195 (283)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccc---cccccCcccccCHHHhhhc
Confidence            4567888999999999999998 49999999999999999999999999998754332   2345688999999998641


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ...++.++|||||||++|+|++|..||.+.........+..... ....+...++.++++|.+||+.||++|||+++
T Consensus       196 ---~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~-~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~e  271 (283)
T PHA02988        196 ---FSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNN-SLKLPLDCPLEIKCIVEACTSHDSIKRPNIKE  271 (283)
T ss_pred             ---cccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCC-CCCCCCcCcHHHHHHHHHHhcCCcccCcCHHH
Confidence               14688999999999999999999999998876665555543322 22234467899999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       272 ll~  274 (283)
T PHA02988        272 ILY  274 (283)
T ss_pred             HHH
Confidence            985

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.94  E-value=3.6e-26  Score=233.16  Aligned_cols=156  Identities=28%  Similarity=0.466  Sum_probs=125.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......  ......+++.|+|||++..
T Consensus       209 l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  288 (374)
T cd05106         209 LDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFD  288 (374)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcC
Confidence            46788999999999999999999999999999999999999999999999876533211  1122335567999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||+||++|+|++ |+.||.................. ...+...++++.+++.+||..+|++|||+
T Consensus       289 -----~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~RPs~  362 (374)
T cd05106         289 -----CVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQ-MSRPDFAPPEIYSIMKMCWNLEPTERPTF  362 (374)
T ss_pred             -----CCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccC-ccCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence                 568899999999999999997 99999876654444444443221 12344568999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       363 ~~l~~  367 (374)
T cd05106         363 SQISQ  367 (374)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.94  E-value=5.6e-26  Score=218.66  Aligned_cols=156  Identities=29%  Similarity=0.478  Sum_probs=131.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++|++||||+|+||+++.++.++|+|||.+.......  .......+++.|+|||.+..
T Consensus       102 ~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (262)
T cd00192         102 LSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKD  181 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhcc
Confidence            5789999999999999999999999999999999999999999999999997664431  22334567889999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||...........+......  ..+..++.++.+++.+||..+|.+|||+
T Consensus       182 -----~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  254 (262)
T cd00192         182 -----GIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRL--PKPEYCPDELYELMLSCWQLDPEDRPTF  254 (262)
T ss_pred             -----CCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCccCChHHHHHHHHHccCCcccCcCH
Confidence                 468889999999999999998 69999888766665555543222  2355678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       255 ~~l~~~  260 (262)
T cd00192         255 SELVER  260 (262)
T ss_pred             HHHHHh
Confidence            999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.94  E-value=5.6e-26  Score=219.44  Aligned_cols=158  Identities=32%  Similarity=0.653  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.|++.||.|||++|++|+||+|+||+++. +.++|+|||++..............|++.|+|||.+.+  
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~--  179 (260)
T cd08222         103 LSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKH--  179 (260)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHcc--
Confidence            468889999999999999999999999999999999975 67999999998765443333445568899999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...........+.....+..  +..++.++.++|.+||..+|++||++.++
T Consensus       180 ---~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  254 (260)
T cd08222         180 ---QGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSL--PETYSRQLNSIMQSMLNKDPSLRPSAAEI  254 (260)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCC--cchhcHHHHHHHHHHhcCChhhCcCHHHH
Confidence               5577899999999999999999999987766555555554433332  45678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++||||
T Consensus       255 l~~~~~  260 (260)
T cd08222         255 LRNPFI  260 (260)
T ss_pred             hhCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0669|consensus

Probab=99.94  E-value=3.1e-26  Score=208.27  Aligned_cols=166  Identities=25%  Similarity=0.449  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc----cCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT----FDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~----~~~~~~~~gt~~y~aPE~l   76 (488)
                      |+..+|+.++.+++.||.|+|.+.|+|||+||+|+||+.+|.+||+|||+++.+...    .......+-|.+|++||.+
T Consensus       121 ~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEll  200 (376)
T KOG0669|consen  121 FSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELL  200 (376)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHh
Confidence            467899999999999999999999999999999999999999999999999755322    1223345669999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHH---hCCCCCCCC----------------------
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV---RNPPPGLYR----------------------  131 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~---~~~~~~~~~----------------------  131 (488)
                      .+.    ..|+++.|+|..||++.+|++|.+.+.+.+....+.-|.   ....+..++                      
T Consensus       201 LG~----r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~r  276 (376)
T KOG0669|consen  201 LGD----REYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKR  276 (376)
T ss_pred             hcc----cccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhh
Confidence            984    679999999999999999999999998887655544332   111111110                      


Q ss_pred             -------CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         132 -------ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       132 -------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                             +-.-.+++.+|+.+||..||.+|++++++++|.||+.-+
T Consensus       277 kv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp  322 (376)
T KOG0669|consen  277 KVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDP  322 (376)
T ss_pred             hhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCC
Confidence                   011135778999999999999999999999999998644

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=5.5e-26  Score=223.11  Aligned_cols=163  Identities=39%  Similarity=0.739  Sum_probs=130.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++......  ......++..|+|||.+.+  
T Consensus       102 l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~~pE~~~~--  177 (287)
T cd06621         102 IGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNS--LAGTFTGTSFYMAPERIQG--  177 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccccc--ccccccCCccccCHHHhcC--
Confidence            467788999999999999999999999999999999999999999999998755432  1224467889999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-----ChHHHHHHHHhCCCCCCCC----CCCcCHHHHHHHHHhcccCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDM-----HPTRALFQIVRNPPPGLYR----ASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-----~~~~~~~~~~~~~~~~~~~----~~~~s~~~~~li~~~L~~dP  151 (488)
                         ..++.++|+|||||++|+|++|..||...     ...+....+.....+....    ...+++.+.++|.+||..+|
T Consensus       178 ---~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  254 (287)
T cd06621         178 ---KPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDP  254 (287)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCc
Confidence               56888999999999999999999999765     2223233322222221111    13467899999999999999


Q ss_pred             CCCCCHHHHhcCcCCCCCC
Q psy9090         152 EHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       152 ~~Rps~~ell~hp~f~~~~  170 (488)
                      .+|||+.+++.||||+...
T Consensus       255 ~~Rpt~~eil~~~~~~~~~  273 (287)
T cd06621         255 TRRPTPWDMLEHPWIKAQM  273 (287)
T ss_pred             ccCCCHHHHHhCccccccc
Confidence            9999999999999997643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.94  E-value=4.5e-26  Score=229.22  Aligned_cols=157  Identities=29%  Similarity=0.504  Sum_probs=126.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++..+..++.||+.||.|||++||+||||||+|||++.++.++|+|||++........  ......++..|+|||++.+
T Consensus       170 l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  249 (337)
T cd05054         170 LTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFD  249 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcC
Confidence            46788999999999999999999999999999999999999999999999976532211  1223455678999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||+||++|+|++ |..||.+..........+..... ...+..+++++.+++.+||+.+|++||++
T Consensus       250 -----~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~~p~~RPs~  323 (337)
T cd05054         250 -----KVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTR-MRAPEYATPEIYSIMLDCWHNNPEDRPTF  323 (337)
T ss_pred             -----CCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCC-CCCCccCCHHHHHHHHHHccCChhhCcCH
Confidence                 678899999999999999997 99999875544433333332221 12345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .++++|
T Consensus       324 ~ell~~  329 (337)
T cd05054         324 SELVEI  329 (337)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.94  E-value=6.8e-26  Score=218.68  Aligned_cols=155  Identities=26%  Similarity=0.421  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---cccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.||+.||+|||++|++||||||.||+++.++.+||+|||++.........   .....+++.|+|||.+.
T Consensus        92 ~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  171 (257)
T cd05116          92 VTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMN  171 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhc
Confidence            478889999999999999999999999999999999999999999999998765432111   12223457899999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     ..++.++|+|||||++|+|++ |.+||...........+.....+.  .+..+++++.++|.+||+.||++||+
T Consensus       172 ~-----~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~~~~~p~~Rp~  244 (257)
T cd05116         172 Y-----YKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERME--CPQRCPPEMYDLMKLCWTYGVDERPG  244 (257)
T ss_pred             c-----CCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHhccCchhCcC
Confidence            5     567889999999999999997 999998877665555554433222  34568999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.+|..
T Consensus       245 ~~~i~~  250 (257)
T cd05116         245 FAVVEL  250 (257)
T ss_pred             HHHHHH
Confidence            998864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.93  E-value=6.6e-26  Score=218.12  Aligned_cols=160  Identities=38%  Similarity=0.776  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||+.|++|+||+|+||+++.++.+||+|||++...... .......|++.|+|||.+... 
T Consensus        99 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~-  176 (258)
T cd06632          99 FPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEF-SFAKSFKGSPYWMAPEVIAQQ-  176 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceecccc-ccccccCCCcceeCHHHhcCC-
Confidence            467888999999999999999999999999999999999999999999998765433 223455688999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|..||...........+...... ...+..+++.+.+++.+||..+|.+||++.++
T Consensus       177 ---~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~  252 (258)
T cd06632         177 ---GGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKEL-PPIPDHLSDEAKDFILKCLQRDPSLRPTAAEL  252 (258)
T ss_pred             ---CCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccC-CCcCCCcCHHHHHHHHHHhhcCcccCcCHHHH
Confidence               23788999999999999999999999776654444444331111 12345678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      +.|||+
T Consensus       253 l~~~~~  258 (258)
T cd06632         253 LEHPFV  258 (258)
T ss_pred             hcCCCC
Confidence            999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.93  E-value=8.6e-26  Score=216.42  Aligned_cols=158  Identities=34%  Similarity=0.616  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||+.+++|+||+|+||+++.++.++|+|||++..............++..|+|||.+.+  
T Consensus        90 l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~--  167 (250)
T cd05123          90 FSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLG--  167 (250)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCC--
Confidence            478899999999999999999999999999999999999999999999998765443223445568889999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+||||+++|++++|..||...........+...   ....+...+..+.++|++||..||++||++   
T Consensus       168 ---~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~  241 (250)
T cd05123         168 ---KGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKD---PLRFPEFLSPEARDLISGLLQKDPTKRLGSGGA  241 (250)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcC---CCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccH
Confidence               45678999999999999999999999777654444444432   223445568999999999999999999999   


Q ss_pred             HHHhcCcCC
Q psy9090         158 SELLEHPFI  166 (488)
Q Consensus       158 ~ell~hp~f  166 (488)
                      +++++||||
T Consensus       242 ~~l~~~~~f  250 (250)
T cd05123         242 EEIKAHPFF  250 (250)
T ss_pred             HHHHhCCCC
Confidence            999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.93  E-value=6.6e-26  Score=223.76  Aligned_cols=155  Identities=27%  Similarity=0.453  Sum_probs=125.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++|++||||||+|||++.++.+||+|||++...... ........+..|+|||++.+  
T Consensus       116 l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  192 (297)
T cd05089         116 LTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVY-VKKTMGRLPVRWMAIESLNY--  192 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEECCcCCCccccce-eccCCCCcCccccCchhhcc--
Confidence            457788999999999999999999999999999999999999999999998643221 11112223457999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||||||++|+|++ |..||...........+.....+.  .+..++..+++|+.+||..+|.+|||+++
T Consensus       193 ---~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  267 (297)
T cd05089         193 ---SVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRME--KPRNCDDEVYELMRQCWRDRPYERPPFAQ  267 (297)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence               568899999999999999997 999998887766655555443222  34567899999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      +++.
T Consensus       268 i~~~  271 (297)
T cd05089         268 ISVQ  271 (297)
T ss_pred             HHHH
Confidence            9753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.93  E-value=2.6e-26  Score=219.13  Aligned_cols=151  Identities=24%  Similarity=0.328  Sum_probs=123.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++|++||||||+||+++.++.++++|||.+......   .....++..|+|||.+..  
T Consensus        82 l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~---~~~~~~~~~y~aPE~~~~--  156 (237)
T cd05576          82 IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS---CDGEAVENMYCAPEVGGI--  156 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccc---cccCCcCccccCCcccCC--
Confidence            578899999999999999999999999999999999999999999999987655432   223355778999998865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..++.++|+||+|+++|+|++|..|+......     +  ........+..+++.++++|.+||+.||++||++   
T Consensus       157 ---~~~~~~~DvwslG~il~el~~g~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~  226 (237)
T cd05576         157 ---SEETEACDWWSLGAILFELLTGKTLVECHPSG-----I--NTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVA  226 (237)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHHCcchhhcCchh-----c--ccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCcc
Confidence               56788999999999999999999987543211     0  0011112345578999999999999999999985   


Q ss_pred             --HHHhcCcCC
Q psy9090         158 --SELLEHPFI  166 (488)
Q Consensus       158 --~ell~hp~f  166 (488)
                        +++++||||
T Consensus       227 ~~~~~~~h~~~  237 (237)
T cd05576         227 GVEDIKSHPFF  237 (237)
T ss_pred             chHHHHcCCCC
Confidence              999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=1e-25  Score=219.87  Aligned_cols=162  Identities=28%  Similarity=0.548  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||+|||++|++||||+|+||+++.++.++|+|||++..............++..|+|||.+.+. 
T Consensus        95 ~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-  173 (282)
T cd07829          95 LSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGS-  173 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCC-
Confidence            5788999999999999999999999999999999999999999999999987654432233344567889999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC-----------------CCC------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP-----------------PGL------YRASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~-----------------~~~------~~~~~  134 (488)
                         ..++.++|+|||||++|++++|.+||..........++...   +.                 +..      .....
T Consensus       174 ---~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (282)
T cd07829         174 ---KHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPR  250 (282)
T ss_pred             ---cCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhccc
Confidence               36788999999999999999999999877655444333221   00                 000      00123


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .+..+.++|.+||..+|++||++.+++.||||
T Consensus       251 ~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         251 LDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             ccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            47789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.93  E-value=6.8e-26  Score=221.18  Aligned_cols=155  Identities=27%  Similarity=0.465  Sum_probs=128.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||++|++||||||+||+++.++.++|+|||++.......  .......+++.|+|||++.+
T Consensus       119 l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  198 (280)
T cd05049         119 LTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMY  198 (280)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhcc
Confidence            4677889999999999999999999999999999999999999999999987543211  11223345788999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+.....+.  .+..++..+.+++.+||..||++||++
T Consensus       199 -----~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~  271 (280)
T cd05049         199 -----RKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQ--RPRTCPSEVYDIMLGCWKRDPQQRINI  271 (280)
T ss_pred             -----CCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHcCCCcccCCCH
Confidence                 568899999999999999998 999998877666655555443322  245678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       272 ~eil~  276 (280)
T cd05049         272 KDIHE  276 (280)
T ss_pred             HHHHH
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG1006|consensus

Probab=99.93  E-value=4.1e-27  Score=215.58  Aligned_cols=167  Identities=34%  Similarity=0.590  Sum_probs=139.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++|+.+-.|..-.+.||.||.. .+|||||+||+|||++..|.|||||||.+-.+..... .+.-.|-..|+|||.+...
T Consensus       164 ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiA-kT~daGCrpYmAPERi~p~  242 (361)
T KOG1006|consen  164 IPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIA-KTVDAGCRPYMAPERIDPS  242 (361)
T ss_pred             CcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHHHHH-hhhccCCccccChhccCCc
Confidence            5778888888889999999975 5899999999999999999999999999876654322 2233678899999998653


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-HHHHHHHHhCCCCCCCCCCC---cCHHHHHHHHHhcccCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRALFQIVRNPPPGLYRASN---WSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~---~s~~~~~li~~~L~~dP~~Rp  155 (488)
                         ..+|+.++|+||||++|||+.||..|+.+... .+++.+++.+.+|.+..+..   ++..++.+|..||.+|-..||
T Consensus       243 ---~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rp  319 (361)
T KOG1006|consen  243 ---DKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRP  319 (361)
T ss_pred             ---cCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCc
Confidence               24699999999999999999999999987654 45566677777666655544   799999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPE  171 (488)
Q Consensus       156 s~~ell~hp~f~~~~~  171 (488)
                      +..+++.+||++....
T Consensus       320 ky~~Lk~~~fyr~y~~  335 (361)
T KOG1006|consen  320 KYDDLKKFPFYRMYAV  335 (361)
T ss_pred             chhhhhcCchhhhhhh
Confidence            9999999999986543

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.93  E-value=1e-25  Score=219.15  Aligned_cols=163  Identities=35%  Similarity=0.760  Sum_probs=129.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++|++||||+|+||+++.++.++|+|||++.......  .......|+..|+|||.+..
T Consensus       105 l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  184 (272)
T cd06629         105 FEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHS  184 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhcc
Confidence            4678899999999999999999999999999999999999999999999987543221  11233467889999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCC--CCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLY--RASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~--~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..   ..++.++|+||||+++|++++|..||...........+..... +...  ....++..+.++|.+||..+|.+||
T Consensus       185 ~~---~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  261 (272)
T cd06629         185 YS---QGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRP  261 (272)
T ss_pred             cc---CCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCC
Confidence            21   2478899999999999999999999976655444444332211 1111  1234688999999999999999999


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      |++++++|||+
T Consensus       262 s~~~il~~~~~  272 (272)
T cd06629         262 TARELLQHPFI  272 (272)
T ss_pred             CHHHHhhCCCC
Confidence            99999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.93  E-value=5.9e-26  Score=220.01  Aligned_cols=161  Identities=33%  Similarity=0.629  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccC----ccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~   75 (488)
                      +++..+..++.||+.||.|||++|++|+||+|+||+++.++ .++|+|||++........    ......++..|+|||.
T Consensus       100 ~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~  179 (268)
T cd06630         100 FKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEV  179 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhH
Confidence            47888999999999999999999999999999999998776 599999999876543211    1223467889999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      +.+     ..++.++|+||+|+++|+|++|..||......   ....+...... ....+...++.+.+++.+||..+|+
T Consensus       180 ~~~-----~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~  253 (268)
T cd06630         180 LRG-----EQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATT-APSIPEHLSPGLRDVTLRCLELQPE  253 (268)
T ss_pred             hcc-----CCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCC-CCCCchhhCHHHHHHHHHHcCCCcc
Confidence            865     56788999999999999999999999654322   22222221111 1123445789999999999999999


Q ss_pred             CCCCHHHHhcCcCCC
Q psy9090         153 HRPYMSELLEHPFIT  167 (488)
Q Consensus       153 ~Rps~~ell~hp~f~  167 (488)
                      +||++.++++||||+
T Consensus       254 ~R~~~~~ll~~~~~~  268 (268)
T cd06630         254 DRPPSRELLKHPVFR  268 (268)
T ss_pred             cCcCHHHHhcCcccC
Confidence            999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.93  E-value=5e-26  Score=229.63  Aligned_cols=164  Identities=27%  Similarity=0.499  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++.....   ......+++.|+|||.+.+. 
T Consensus       117 l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~---~~~~~~~~~~y~aPE~~~~~-  192 (345)
T cd07877         117 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD---EMTGYVATRWYRAPEIMLNW-  192 (345)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccccccccc---cccccccCCCccCHHHHhCc-
Confidence            46788999999999999999999999999999999999999999999999875432   22345688999999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC----------------------CCCC------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP----------------------PGLY------RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~----------------------~~~~------~~  132 (488)
                         ..++.++|+||+||++|+|++|++||...........+.....                      +...      ..
T Consensus       193 ---~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (345)
T cd07877         193 ---MHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF  269 (345)
T ss_pred             ---cCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhc
Confidence               4578899999999999999999999977655443333221000                      0000      01


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ...++.+.++|.+||..+|.+||++.++++||||.+...
T Consensus       270 ~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~  308 (345)
T cd07877         270 IGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  308 (345)
T ss_pred             CCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCC
Confidence            135788999999999999999999999999999987543

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=7.7e-26  Score=224.58  Aligned_cols=162  Identities=39%  Similarity=0.781  Sum_probs=134.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.|++.||.|||+++++||||+|+||+++.++.++|+|||++.....    .....+++.|+|||.+.+..
T Consensus       112 l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~  187 (308)
T cd06634         112 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----ANXFVGTPYWMAPEVILAMD  187 (308)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecC----cccccCCccccCHHHHhhcc
Confidence            46788999999999999999999999999999999999999999999998865432    23456889999999985321


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ...++.++|||||||++|+|++|..||...........+.....+.. ....++..+.++|.+||..+|.+||++.++
T Consensus       188 --~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l  264 (308)
T cd06634         188 --EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVL  264 (308)
T ss_pred             --cCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCc-CcccccHHHHHHHHHHhhCCcccCCCHHHH
Confidence              13467899999999999999999999987766555555554433322 234678999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++|||+...
T Consensus       265 l~~~~~~~~  273 (308)
T cd06634         265 LKHRFVLRE  273 (308)
T ss_pred             hhCcccccc
Confidence            999999763

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.93  E-value=7.5e-26  Score=217.11  Aligned_cols=160  Identities=36%  Similarity=0.765  Sum_probs=131.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.|++.+|.|||+.|++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+..
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~  177 (260)
T cd06606          98 LPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRG  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcC
Confidence            46888999999999999999999999999999999999999999999999876654322  1344568899999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++|..||.... .......+.. .......+..++..++++|.+||..+|.+||++
T Consensus       178 -----~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~  251 (260)
T cd06606         178 -----EEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGS-SGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTA  251 (260)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccc-cCCCcCCCcccCHHHHHHHHHhCcCChhhCCCH
Confidence                 447889999999999999999999997765 2222222222 112222355678999999999999999999999


Q ss_pred             HHHhcCcCC
Q psy9090         158 SELLEHPFI  166 (488)
Q Consensus       158 ~ell~hp~f  166 (488)
                      .+++.||||
T Consensus       252 ~~ll~~~~~  260 (260)
T cd06606         252 DELLQHPFL  260 (260)
T ss_pred             HHHhhCCCC
Confidence            999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0197|consensus

Probab=99.93  E-value=4.5e-26  Score=228.11  Aligned_cols=153  Identities=27%  Similarity=0.462  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +-.+...++.||++|++||+++++|||||...||||+++..+||+|||+++......-. .....-...|.|||++..  
T Consensus       301 ~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~--  378 (468)
T KOG0197|consen  301 NLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNY--  378 (468)
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhh--
Confidence            45678899999999999999999999999999999999999999999999954432111 111122457999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||||||+|+||+| |+.||.+++..+.+..+-++..-  +.|..+|+++.++|..||..+|++|||++.
T Consensus       379 ---~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRl--p~P~~CP~~vY~lM~~CW~~~P~~RPtF~~  453 (468)
T KOG0197|consen  379 ---GKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRL--PRPEGCPDEVYELMKSCWHEDPEDRPTFET  453 (468)
T ss_pred             ---CCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcC--CCCCCCCHHHHHHHHHHhhCCcccCCCHHH
Confidence               679999999999999999998 99999999999988888887643  467789999999999999999999999987


Q ss_pred             Hh
Q psy9090         160 LL  161 (488)
Q Consensus       160 ll  161 (488)
                      +.
T Consensus       454 L~  455 (468)
T KOG0197|consen  454 LR  455 (468)
T ss_pred             HH
Confidence            65

>KOG2345|consensus

Probab=99.93  E-value=1.4e-26  Score=210.37  Aligned_cols=161  Identities=27%  Similarity=0.455  Sum_probs=124.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEEEecCCccccccccCc---------cccccCCCc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---------KKTFLGSPS   69 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---------~~~~~gt~~   69 (488)
                      +||.++..|+.+|.+||.+||+..  .+||||||.|||+.+.+.++|.|||.++...-....         ...-..|..
T Consensus       124 ~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~p  203 (302)
T KOG2345|consen  124 VSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIP  203 (302)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCc
Confidence            589999999999999999999999  999999999999999999999999998754321110         112246889


Q ss_pred             cccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH-HHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcc
Q psy9090          70 WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR-ALFQIVRNPPPGLYRASNWSQHYVDFIAECLE  148 (488)
Q Consensus        70 y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~  148 (488)
                      |+|||.+.....  ...++++|||||||++|.|+.|..||....... .+.-.+.+.....+....+|+.+.++|+.||+
T Consensus       204 yRAPELf~vk~~--~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~mlq  281 (302)
T KOG2345|consen  204 YRAPELFNVKSH--CTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEALHQLIKSMLQ  281 (302)
T ss_pred             ccCchheecccC--cccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHHHHHHHHHhc
Confidence            999999876322  456889999999999999999999995321100 00001122233344455689999999999999


Q ss_pred             cCCCCCCCHHHHhcC
Q psy9090         149 KNPEHRPYMSELLEH  163 (488)
Q Consensus       149 ~dP~~Rps~~ell~h  163 (488)
                      .||.+||++.+++.+
T Consensus       282 vdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  282 VDPNQRPTIPELLSK  296 (302)
T ss_pred             CCcccCCCHHHHHHH
Confidence            999999999999864

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.93  E-value=9.6e-26  Score=221.86  Aligned_cols=155  Identities=27%  Similarity=0.471  Sum_probs=127.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.++|+|||++.......  .......+++.|+|||.+.+
T Consensus       120 ~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  199 (291)
T cd05094         120 LGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMY  199 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhcc
Confidence            4678899999999999999999999999999999999999999999999987543321  11233456788999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |..||...........+.....+.  .+..++..+.+++.+||..+|++|||+
T Consensus       200 -----~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~P~~Rpt~  272 (291)
T cd05094         200 -----RKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLE--RPRVCPKEVYDIMLGCWQREPQQRLNI  272 (291)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCCC--CCccCCHHHHHHHHHHcccChhhCcCH
Confidence                 567889999999999999998 999998877666555544433322  234568899999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       273 ~~v~~  277 (291)
T cd05094         273 KEIYK  277 (291)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.93  E-value=5.6e-26  Score=223.26  Aligned_cols=170  Identities=31%  Similarity=0.511  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||+.|++||||+|+|||++.++.++|+|||++....... .......|+..|+|||.+...
T Consensus       102 l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  181 (290)
T cd05613         102 FKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGG  181 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCC
Confidence            4678899999999999999999999999999999999999999999999987653321 122345688999999998642


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-  155 (488)
                         ...++.++|+||+|+++|+|++|..||......   ..+........++  .+..+++.+.+++.+||..+|++|| 
T Consensus       182 ---~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~l~~~p~~R~~  256 (290)
T cd05613         182 ---DGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPP--YPQEMSALAKDIIQRLLMKDPKKRLG  256 (290)
T ss_pred             ---CCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCC--CCccCCHHHHHHHHHHhcCCHHHhcC
Confidence               134678899999999999999999999643221   1122222222221  2455789999999999999999997 


Q ss_pred             ----CHHHHhcCcCCCCCCCCccc
Q psy9090         156 ----YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 ----s~~ell~hp~f~~~~~~~~~  175 (488)
                          ++++++.||||....|+.+.
T Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~  280 (290)
T cd05613         257 CGPSDADEIKKHPFFQKINWDDLA  280 (290)
T ss_pred             CCCCCHHHHHcCcccccCCHHHHh
Confidence                88999999999999886653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.93  E-value=1.5e-25  Score=215.41  Aligned_cols=157  Identities=32%  Similarity=0.597  Sum_probs=133.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++++.++.++.|++.||.|||++|++|+||+|+||+++.++.+||+|||++......  ......+++.|+|||.+.+  
T Consensus       100 ~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~Pe~~~~--  175 (256)
T cd08530         100 IPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN--MAKTQIGTPHYMAPEVWKG--  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccC--CcccccCCccccCHHHHCC--
Confidence            467889999999999999999999999999999999999999999999998765443  2233568889999999876  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+|+++|+|++|+.||...........+.....+..  +..++.++++++.+||..+|++||++.++
T Consensus       176 ---~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~~p~~Rp~~~~~  250 (256)
T cd08530         176 ---RPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPI--PPIYSQDLQNFIRSMLQVKPKLRPNCDKI  250 (256)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCC--chhhCHHHHHHHHHHcCCCcccCCCHHHH
Confidence               5678899999999999999999999988776555555544433332  34678999999999999999999999999


Q ss_pred             hcCcCC
Q psy9090         161 LEHPFI  166 (488)
Q Consensus       161 l~hp~f  166 (488)
                      ++||++
T Consensus       251 l~~p~~  256 (256)
T cd08530         251 LASPAV  256 (256)
T ss_pred             hcCCCC
Confidence            999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.93  E-value=8.1e-26  Score=227.27  Aligned_cols=166  Identities=29%  Similarity=0.493  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-----CccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-----DKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-----~~~~~~~gt~~y~aPE~   75 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.......     .......|++.|+|||.
T Consensus       104 ~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  183 (337)
T cd07852         104 LEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEI  183 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCcee
Confidence            4567888999999999999999999999999999999999999999999987553321     12233468899999998


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC----------------------------CC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP----------------------------PP  127 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~----------------------------~~  127 (488)
                      +.+.    ..++.++|+||+|+++|+|++|++||.+........++....                            .+
T Consensus       184 ~~~~----~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (337)
T cd07852         184 LLGS----TRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKP  259 (337)
T ss_pred             eecc----ccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccc
Confidence            7642    457789999999999999999999998765444333221110                            00


Q ss_pred             CCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         128 GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       128 ~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      .......++.++.++|.+||..+|++|||+.++++|||+..+.
T Consensus       260 ~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~  302 (337)
T cd07852         260 LDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFH  302 (337)
T ss_pred             hhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhc
Confidence            0001123688999999999999999999999999999998764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.93  E-value=1.2e-25  Score=219.68  Aligned_cols=155  Identities=26%  Similarity=0.399  Sum_probs=124.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc--cccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||+|||++|++||||||+|||++.++.+||+|||+++........  .....+++.|+|||.+.+
T Consensus       106 ~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  185 (279)
T cd05109         106 IGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILH  185 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhcc
Confidence            477889999999999999999999999999999999999999999999998765432111  112234678999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||...........+.....+  ..+..++..+.+++.+||..||++||++
T Consensus       186 -----~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rp~~  258 (279)
T cd05109         186 -----RRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERL--PQPPICTIDVYMIMVKCWMIDSECRPRF  258 (279)
T ss_pred             -----CCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcC--CCCccCCHHHHHHHHHHcCCChhhCcCH
Confidence                 568899999999999999998 99999776654433333332222  2345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .+++.
T Consensus       259 ~~l~~  263 (279)
T cd05109         259 RELVD  263 (279)
T ss_pred             HHHHH
Confidence            99985

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0193|consensus

Probab=99.93  E-value=1.5e-26  Score=233.17  Aligned_cols=159  Identities=30%  Similarity=0.473  Sum_probs=130.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccc--cccCccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~--~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      .......|++||++|+.|||.++|||||||..||++.+++.|||+|||++....  ..........|...|||||+++..
T Consensus       486 dm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmq  565 (678)
T KOG0193|consen  486 DMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQ  565 (678)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhc
Confidence            456678999999999999999999999999999999999999999999986432  122334556788899999999864


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC--CCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP--GLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      +  ..+|++.+||||+||++|||+||..||.......+++++-++...  ......+.++++++|+..||..+|++||.+
T Consensus       566 d--~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F  643 (678)
T KOG0193|consen  566 D--DNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLF  643 (678)
T ss_pred             c--cCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccH
Confidence            3  478999999999999999999999999966666666665555221  122345667899999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .+||.
T Consensus       644 ~~il~  648 (678)
T KOG0193|consen  644 PQLLS  648 (678)
T ss_pred             HHHHH
Confidence            99886

>KOG1989|consensus

Probab=99.93  E-value=2e-26  Score=242.42  Aligned_cols=155  Identities=26%  Similarity=0.416  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEEEecCCccccccccCcc---------ccccCCCc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK---------KTFLGSPS   69 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~---------~~~~gt~~   69 (488)
                      |+|.+|..|++|+++||.+||...  |||||||-|||||..+|+.||||||.++.........         -....|+.
T Consensus       141 lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~  220 (738)
T KOG1989|consen  141 LTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQ  220 (738)
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCcc
Confidence            689999999999999999999998  9999999999999999999999999986443222111         12357999


Q ss_pred             cccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          70 WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        70 y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      |+|||++.-.  ...+.++|+|||+|||+||-|+....||++.....+    +. ....++..++++..+++||+.||+.
T Consensus       221 YRsPEMIDly--sg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laI----ln-g~Y~~P~~p~ys~~l~~LI~~mL~~  293 (738)
T KOG1989|consen  221 YRSPEMIDLY--SGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAI----LN-GNYSFPPFPNYSDRLKDLIRTMLQP  293 (738)
T ss_pred             ccChHHHhhh--cCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeE----Ee-ccccCCCCccHHHHHHHHHHHHhcc
Confidence            9999998542  226789999999999999999999999987643322    22 2223344568899999999999999


Q ss_pred             CCCCCCCHHHHhc
Q psy9090         150 NPEHRPYMSELLE  162 (488)
Q Consensus       150 dP~~Rps~~ell~  162 (488)
                      ||.+||++-+++.
T Consensus       294 nP~~RPnI~Qv~~  306 (738)
T KOG1989|consen  294 NPDERPNIYQVLE  306 (738)
T ss_pred             CcccCCCHHHHHH
Confidence            9999999998875

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.93  E-value=9.1e-26  Score=219.86  Aligned_cols=158  Identities=30%  Similarity=0.541  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--------------------Cc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--------------------DK   60 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--------------------~~   60 (488)
                      +++..++.++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++.......                    ..
T Consensus        99 l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (280)
T cd05581          99 LDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRR  178 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccc
Confidence            5788999999999999999999999999999999999999999999999987554321                    12


Q ss_pred             cccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHH
Q psy9090          61 KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYV  140 (488)
Q Consensus        61 ~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  140 (488)
                      .....++..|+|||++..     ..++.++|+||||++++++++|..||...........+....   ...+..+++.+.
T Consensus       179 ~~~~~~~~~~~~Pe~~~~-----~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  250 (280)
T cd05581         179 FASFVGTAEYVSPELLNE-----KPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLE---YSFPPNFPPDAK  250 (280)
T ss_pred             cccccCCccccCHHHhCC-----CCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcC---CCCCCccCHHHH
Confidence            234467889999999875     457889999999999999999999998776544444443221   123456789999


Q ss_pred             HHHHHhcccCCCCCCCH----HHHhcCcCC
Q psy9090         141 DFIAECLEKNPEHRPYM----SELLEHPFI  166 (488)
Q Consensus       141 ~li~~~L~~dP~~Rps~----~ell~hp~f  166 (488)
                      ++|.+||..+|.+|||+    +++++||||
T Consensus       251 ~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         251 DLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             HHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            99999999999999999    999999997

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.93  E-value=1.6e-25  Score=216.83  Aligned_cols=155  Identities=24%  Similarity=0.452  Sum_probs=126.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.||+|||++|++||||||+||+++.++.+||+|||++........ ......+++.|+|||.+.+ 
T Consensus       101 l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  179 (263)
T cd05052         101 VNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY-  179 (263)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhcc-
Confidence            46778899999999999999999999999999999999999999999999876543211 1112234567999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|||||||++|+|++ |..||.+.........+.....+  ..+...+..+.+++.+||..+|++|||+.
T Consensus       180 ----~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  253 (263)
T cd05052         180 ----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRM--ERPEGCPPKVYELMRACWQWNPSDRPSFA  253 (263)
T ss_pred             ----CCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHccCCcccCCCHH
Confidence                567889999999999999998 99999887665554444433222  23456789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       254 ~l~~  257 (263)
T cd05052         254 EIHQ  257 (263)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.93  E-value=9e-26  Score=240.42  Aligned_cols=168  Identities=17%  Similarity=0.244  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccc-cCccccccCCCccccchhhcccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANT-FDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +..++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||+++..... ........+++.|+|||.+....
T Consensus       254 ~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~  333 (566)
T PLN03225        254 NKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMST  333 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccC
Confidence            3457789999999999999999999999999999985 578999999999755322 12234567899999999764321


Q ss_pred             cC-----------------CCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC----------CCCCC--
Q psy9090          81 KE-----------------VDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP----------PGLYR--  131 (488)
Q Consensus        81 ~~-----------------~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~----------~~~~~--  131 (488)
                      ..                 ...++.++||||+||++|+|+++..|+...  .....+.+....          +....  
T Consensus       334 ~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  411 (566)
T PLN03225        334 QTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSN--LIQFNRQLKRNDYDLVAWRKLVEPRASPD  411 (566)
T ss_pred             CCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchH--HHHHHHHHHhcCCcHHHHHHhhccccchh
Confidence            11                 012455779999999999999977665432  112222211100          00000  


Q ss_pred             -------CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         132 -------ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       132 -------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                             ....+...++||.+||..||.+|||+.++|+||||......
T Consensus       412 ~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~  459 (566)
T PLN03225        412 LRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDREGLL  459 (566)
T ss_pred             hhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCCcCcCCCCcc
Confidence                   01113345689999999999999999999999999886554

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.93  E-value=8.9e-26  Score=220.41  Aligned_cols=162  Identities=46%  Similarity=0.913  Sum_probs=134.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.++.+||++|++|+||+|+||+++.++.++|+|||++..............++..|+|||.+.+  
T Consensus        98 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~--  175 (277)
T cd06641          98 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQ--  175 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhcc--
Confidence            467889999999999999999999999999999999999999999999998765433222334568889999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||+||++|+|++|..||...........+.....+.  .+..++..+.+++.+||..+|.+||++.++
T Consensus       176 ---~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~  250 (277)
T cd06641         176 ---SAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPT--LEGNYSKPLKEFVEACLNKEPSFRPTAKEL  250 (277)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCC--CCcccCHHHHHHHHHHccCChhhCcCHHHH
Confidence               456789999999999999999999998766555444443332222  234568899999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||...
T Consensus       251 l~~~~~~~~  259 (277)
T cd06641         251 LKHKFIVRF  259 (277)
T ss_pred             HhCHHHhhh
Confidence            999999764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.93  E-value=1.1e-25  Score=222.16  Aligned_cols=162  Identities=29%  Similarity=0.479  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||++........ ......+++.|+|||.+.+.
T Consensus       113 ~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  192 (302)
T cd07864         113 FSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGE  192 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCC
Confidence            46889999999999999999999999999999999999999999999999876543221 11223467789999988642


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCC------------------------CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGL------------------------YRA  132 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~------------------------~~~  132 (488)
                          ..++.++|+||+||++|+|++|++||...........+..   .+.+..                        ...
T Consensus       193 ----~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (302)
T cd07864         193 ----ERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEF  268 (302)
T ss_pred             ----CCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhc
Confidence                3467899999999999999999999987665544433322   111110                        011


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..++..+.++|.+||..+|.+|||+.+++.||||
T Consensus       269 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         269 SFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             CCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence            2357899999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.93  E-value=1.1e-25  Score=220.86  Aligned_cols=177  Identities=31%  Similarity=0.550  Sum_probs=136.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.+|.|||+.|++||||+|+||+++.++.++|+|||++........ ......|++.|+|||.+.+.
T Consensus       102 ~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  181 (288)
T cd05583         102 FTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGG  181 (288)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCC
Confidence            46788999999999999999999999999999999999999999999999876433211 12234688999999998652


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh----HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP----TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .   ..++.++|+||+|+++|+|++|..||.....    ......+.... +  ..+..++..+.++|.+||..+|++||
T Consensus       182 ~---~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~li~~~l~~~p~~R~  255 (288)
T cd05583         182 S---GGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSK-P--PFPKTMSAEARDFIQKLLEKDPKKRL  255 (288)
T ss_pred             C---CCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccC-C--CCCcccCHHHHHHHHHHhcCCHhhcc
Confidence            1   2367899999999999999999999964321    22222222222 1  23455788999999999999999999


Q ss_pred             C---HHHHhcCcCCCCCCCCccccccccccc
Q psy9090         156 Y---MSELLEHPFITSLPENDLHLSTVNCQY  183 (488)
Q Consensus       156 s---~~ell~hp~f~~~~~~~~~~~~~~~~~  183 (488)
                      |   +.++++||||+.+.|+.+......+++
T Consensus       256 t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  286 (288)
T cd05583         256 GANGADEIKNHPFFQGIDWDDLAAKRIPAPF  286 (288)
T ss_pred             CcchHHHHhcCcccccCCHHHHhhhccCCCC
Confidence            8   567799999999988766444443333

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.4e-25  Score=217.96  Aligned_cols=156  Identities=25%  Similarity=0.441  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.|++.||.|||++|++||||||+||++++++.+||+|||+++.......  ......++..|+|||.+..
T Consensus       110 ~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  189 (273)
T cd05035         110 LPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLAD  189 (273)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhccc
Confidence            46788999999999999999999999999999999999999999999999876533211  1112234668999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |.+||.+.........+.....+.  .+..++..+.+++.+||..||++|||+
T Consensus       190 -----~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~  262 (273)
T cd05035         190 -----RVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLK--QPEDCLDELYDLMYSCWRADPKDRPTF  262 (273)
T ss_pred             -----CCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCcCCCHHHHHHHHHHcCCChhhCcCH
Confidence                 567889999999999999999 999998877666555554443322  355779999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++.+
T Consensus       263 ~e~~~~  268 (273)
T cd05035         263 TKLREV  268 (273)
T ss_pred             HHHHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.93  E-value=2.3e-25  Score=222.04  Aligned_cols=163  Identities=40%  Similarity=0.811  Sum_probs=135.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.||+.||.|||++|++||||+|+||+++.++.++|+|||++.....    .....|++.|+|||.+....
T Consensus       122 l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~  197 (317)
T cd06635         122 LQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP----ANSFVGTPYWMAPEVILAMD  197 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCC----cccccCCccccChhhhhcCC
Confidence            46788999999999999999999999999999999999999999999998865432    23456889999999985311


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ...++.++|+||+||++|+|++|..||...........+.....+.. ....+++.++++|.+||..+|.+||++.++
T Consensus       198 --~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i  274 (317)
T cd06635         198 --EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTL-QSNEWSDYFRNFVDSCLQKIPQDRPTSEEL  274 (317)
T ss_pred             --CCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCC-CCccccHHHHHHHHHHccCCcccCcCHHHH
Confidence              14578899999999999999999999988776666666655443322 345678999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      ++|+|+....
T Consensus       275 l~~~~~~~~~  284 (317)
T cd06635         275 LKHMFVLRER  284 (317)
T ss_pred             HhChhhhccC
Confidence            9999996543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.93  E-value=1.3e-25  Score=229.08  Aligned_cols=157  Identities=27%  Similarity=0.472  Sum_probs=126.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+++.+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......  ......+++.|+|||++.+
T Consensus       211 l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  290 (375)
T cd05104         211 LDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFN  290 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcC
Confidence            46788999999999999999999999999999999999999999999999876543211  1122334567999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||..........+.+...... ..+...+.++++||.+||..||++|||+
T Consensus       291 -----~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~  364 (375)
T cd05104         291 -----CVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRM-LSPECAPSEMYDIMKSCWDADPLKRPTF  364 (375)
T ss_pred             -----CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccC-CCCCCCCHHHHHHHHHHccCChhHCcCH
Confidence                 568899999999999999997 899998766554455554433211 1234568899999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .++++.
T Consensus       365 ~eil~~  370 (375)
T cd05104         365 KQIVQL  370 (375)
T ss_pred             HHHHHH
Confidence            999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.93  E-value=1.3e-25  Score=222.35  Aligned_cols=156  Identities=24%  Similarity=0.405  Sum_probs=122.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......  .......+++.|+|||++.. 
T Consensus       136 ~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  214 (304)
T cd05096         136 SYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILM-  214 (304)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhc-
Confidence            567788999999999999999999999999999999999999999999987553221  11223345788999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc--CCCCCCCCChHHHHHHHHh---CC--CCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD--GKPPFEDMHPTRALFQIVR---NP--PPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt--g~~Pf~~~~~~~~~~~~~~---~~--~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                          ..++.++||||||+++|+|++  +..||........+.....   ..  ......+..+++.+.+||.+||..+|+
T Consensus       215 ----~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  290 (304)
T cd05096         215 ----GKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCR  290 (304)
T ss_pred             ----CCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCch
Confidence                568899999999999999985  6778877665444333221   11  111123456789999999999999999


Q ss_pred             CCCCHHHHhc
Q psy9090         153 HRPYMSELLE  162 (488)
Q Consensus       153 ~Rps~~ell~  162 (488)
                      +|||+.++..
T Consensus       291 ~RPs~~~i~~  300 (304)
T cd05096         291 ERPSFSDIHA  300 (304)
T ss_pred             hCcCHHHHHH
Confidence            9999999853

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.8e-25  Score=217.85  Aligned_cols=154  Identities=27%  Similarity=0.492  Sum_probs=127.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||+++......  .......++..|+|||.+.. 
T Consensus       117 ~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  195 (277)
T cd05032         117 TLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD-  195 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhc-
Confidence            567889999999999999999999999999999999999999999999987553321  12233456788999999865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+|||||++|++++ |.+||.+.........+.....+  ..+..++..+.+++.+||..+|++|||+.
T Consensus       196 ----~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  269 (277)
T cd05032         196 ----GVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHL--DLPENCPDKLLELMRMCWQYNPKMRPTFL  269 (277)
T ss_pred             ----CCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence                567889999999999999998 99999887766655555433222  23556799999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       270 ~l~~  273 (277)
T cd05032         270 EIVS  273 (277)
T ss_pred             HHHH
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.2e-25  Score=215.00  Aligned_cols=155  Identities=28%  Similarity=0.495  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc---ccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK---KTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~---~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.|++.||+|||.++++||||||+||+++.++.+||+|||+++.........   ....++..|+|||.+.
T Consensus        92 ~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  171 (257)
T cd05060          92 IPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECIN  171 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhc
Confidence            4688999999999999999999999999999999999999999999999987654332211   1112346799999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|+||||+++|+|++ |.+||...........+.....  ...+..++..++++|.+||..+|.+||+
T Consensus       172 ~-----~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~Rp~  244 (257)
T cd05060         172 Y-----GKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGER--LPRPEECPQEIYSIMLSCWKYRPEDRPT  244 (257)
T ss_pred             C-----CCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHhcCChhhCcC
Confidence            5     568889999999999999998 9999988776555444443322  2345667899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       245 ~~~l~~  250 (257)
T cd05060         245 FSELES  250 (257)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.93  E-value=1.5e-25  Score=218.62  Aligned_cols=155  Identities=27%  Similarity=0.493  Sum_probs=125.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +...+..++.|++.||.|||++|++||||||+||+++.++.++|+|||+++.......  ......+++.|+|||.+.+ 
T Consensus       117 ~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  195 (277)
T cd05062         117 SLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKD-  195 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhc-
Confidence            4567888999999999999999999999999999999999999999999875432211  1122345778999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+|||||++|+|++ |..||.+.........+.....+.  .+...+..+.+++.+||..+|++|||+.
T Consensus       196 ----~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~  269 (277)
T cd05062         196 ----GVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLD--KPDNCPDMLFELMRMCWQYNPKMRPSFL  269 (277)
T ss_pred             ----CCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence                567889999999999999998 789998877655554444433222  3456788999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       270 e~l~~  274 (277)
T cd05062         270 EIISS  274 (277)
T ss_pred             HHHHH
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=2.7e-25  Score=217.25  Aligned_cols=161  Identities=32%  Similarity=0.552  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.++..++.|++.+|.|||++|++|+||+|+||+++.++.++|+|||++...... .......++..|+|||++... 
T Consensus        96 ~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~-  173 (283)
T cd07830          96 FSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR-PPYTDYVSTRWYRAPEILLRS-  173 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCC-CCcCCCCCcccccCceeeecC-
Confidence            467899999999999999999999999999999999999999999999998765432 223345688899999988642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCC------------------CCC------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPP------------------GLY------RAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~------------------~~~------~~~  133 (488)
                         ..++.++|+||+|+++++|++|.+||..........++...   +..                  ...      ...
T Consensus       174 ---~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T cd07830         174 ---TSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIP  250 (283)
T ss_pred             ---cCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcc
Confidence               45788999999999999999999999876654444333210   000                  000      011


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      ..+..+.++|.+||..+|++|||+++++.||||
T Consensus       251 ~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         251 NASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             cCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence            226789999999999999999999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=6.8e-26  Score=227.00  Aligned_cols=168  Identities=33%  Similarity=0.609  Sum_probs=126.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-------cccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-------KKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-------~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||++|++||||||+||+++.++.++++||+.+.........       .....++..|+||
T Consensus        98 ~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  177 (328)
T cd08226          98 MSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSP  177 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccCh
Confidence            467889999999999999999999999999999999999999999999754322111010       0112345679999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-------------------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-------------------------  128 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-------------------------  128 (488)
                      |++.+.   ...++.++|+||+||++|+|++|.+||...................                         
T Consensus       178 E~~~~~---~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (328)
T cd08226         178 ELLRQD---LYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGI  254 (328)
T ss_pred             hhhcCC---CCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhccc
Confidence            998752   1347889999999999999999999998765544443333221100                         


Q ss_pred             -------------------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         129 -------------------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       129 -------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                                         ......+++.+.+||++||..||++|||+.++++||||+.+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~~  316 (328)
T cd08226         255 GESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKE  316 (328)
T ss_pred             ccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHHH
Confidence                               0011234677899999999999999999999999999976543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2e-25  Score=216.23  Aligned_cols=159  Identities=31%  Similarity=0.653  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||+++......   .......++..|+|||.+.
T Consensus       103 l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (264)
T cd06653         103 LTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVIS  182 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhc
Confidence            4678889999999999999999999999999999999999999999999987653211   1122356889999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      +     ..++.++|+|||||++|+|++|..||..........++...+.. ...+..+++.+.++|.+||. +|..||++
T Consensus       183 ~-----~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~i~~~l~-~~~~r~~~  255 (264)
T cd06653         183 G-----EGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTK-PMLPDGVSDACRDFLKQIFV-EEKRRPTA  255 (264)
T ss_pred             C-----CCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCC-CCCCcccCHHHHHHHHHHhc-CcccCccH
Confidence            5     45788999999999999999999999887666655555543322 22456788999999999999 57999999


Q ss_pred             HHHhcCcCC
Q psy9090         158 SELLEHPFI  166 (488)
Q Consensus       158 ~ell~hp~f  166 (488)
                      .+++.|||.
T Consensus       256 ~~~~~~~~~  264 (264)
T cd06653         256 EFLLRHPFV  264 (264)
T ss_pred             HHHhcCCCC
Confidence            999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=1.7e-25  Score=218.91  Aligned_cols=155  Identities=26%  Similarity=0.450  Sum_probs=126.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++|++||||||+|||++.++.+||+|||++.......  .......+++.|+|||.+.+
T Consensus       119 l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  198 (280)
T cd05092         119 LTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILY  198 (280)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhcc
Confidence            4678899999999999999999999999999999999999999999999986543211  11122345678999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |.+||...........+......  ..+..+++.+.++|.+||..+|.+||++
T Consensus       199 -----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~P~~Rp~~  271 (280)
T cd05092         199 -----RKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGREL--ERPRTCPPEVYAIMQGCWQREPQQRMVI  271 (280)
T ss_pred             -----CCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccC--CCCCCCCHHHHHHHHHHccCChhhCCCH
Confidence                 568899999999999999998 99999877766655555444322  2345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .+++.
T Consensus       272 ~~l~~  276 (280)
T cd05092         272 KDIHS  276 (280)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.93  E-value=1.2e-25  Score=217.88  Aligned_cols=156  Identities=24%  Similarity=0.498  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++..............|++.|+|||.+.+  
T Consensus       103 ~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~--  180 (267)
T cd08228         103 IPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE--  180 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhcc--
Confidence            467889999999999999999999999999999999999999999999998765443222334568899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                         ..++.++|+||+|+++|+|++|..||.....  ......+.....++. .....+..+.++|.+||..+|++||++.
T Consensus       181 ---~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rp~~~  256 (267)
T cd08228         181 ---NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPL-PTEHYSEKLRELVSMCIYPDPDQRPDIG  256 (267)
T ss_pred             ---CCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCC-ChhhcCHHHHHHHHHHCCCCcccCcCHH
Confidence               5578899999999999999999999965432  222222222222222 2335678999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       257 ~vl~  260 (267)
T cd08228         257 YVHQ  260 (267)
T ss_pred             HHHH
Confidence            9986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.3e-25  Score=226.39  Aligned_cols=164  Identities=28%  Similarity=0.535  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.++|+|||++......   .....+++.|+|||.+.+. 
T Consensus       115 l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~-  190 (343)
T cd07880         115 LSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSE---MTGYVVTRWYRAPEVILNW-  190 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccccccC---ccccccCCcccCHHHHhCC-
Confidence            578899999999999999999999999999999999999999999999998765332   2344678899999998642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC----------------------CCC------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP----------------------PGL------YRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~----------------------~~~------~~~  132 (488)
                         ..++.++|+||+|+++|++++|.+||.+.........+.....                      +..      ...
T Consensus       191 ---~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T cd07880         191 ---MHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLL  267 (343)
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhc
Confidence               3477899999999999999999999987665443333322110                      000      011


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ...++.+.++|.+||..||++|||+.+++.||||+....
T Consensus       268 ~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~  306 (343)
T cd07880         268 PNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHD  306 (343)
T ss_pred             cCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcC
Confidence            346788999999999999999999999999999987644

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=219.39  Aligned_cols=162  Identities=26%  Similarity=0.482  Sum_probs=129.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||+.|++|+||+|+||+++.++.++|+|||++........ ......++..|+|||.+.+.
T Consensus        97 ~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  176 (287)
T cd07840          97 FTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGA  176 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEcc
Confidence            46889999999999999999999999999999999999999999999999876544321 12334567889999987642


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC---CCCCC------------------------CC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP---PPGLY------------------------RA  132 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~---~~~~~------------------------~~  132 (488)
                          ..++.++|+||||+++|+|++|..||...........+....   .+..+                        ..
T Consensus       177 ----~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (287)
T cd07840         177 ----TRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFF  252 (287)
T ss_pred             ----ccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHh
Confidence                457889999999999999999999998777655444443211   00000                        00


Q ss_pred             CC-cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCC
Q psy9090         133 SN-WSQHYVDFIAECLEKNPEHRPYMSELLEHPFI  166 (488)
Q Consensus       133 ~~-~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f  166 (488)
                      .. .++.+.+++.+||..+|.+||++.++++||||
T Consensus       253 ~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         253 KHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             cccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence            11 27889999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.93  E-value=2.3e-25  Score=215.16  Aligned_cols=155  Identities=25%  Similarity=0.437  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---cccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++.........   .....+++.|+|||.+.
T Consensus        92 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  171 (257)
T cd05115          92 ITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECIN  171 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHc
Confidence            578899999999999999999999999999999999999999999999998754322111   11122356899999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     ..++.++|+|||||++|++++ |..||...........+.....+.  .+...++++.++|.+||..+|++||+
T Consensus       172 ~-----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~c~~~~~~~Rp~  244 (257)
T cd05115         172 F-----RKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLD--CPAECPPEMYALMKDCWIYKWEDRPN  244 (257)
T ss_pred             c-----CCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHcCCChhhCcC
Confidence            5     567889999999999999996 999998887666555554443322  34567899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++.+
T Consensus       245 ~~~i~~  250 (257)
T cd05115         245 FAKVEE  250 (257)
T ss_pred             HHHHHH
Confidence            999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.93  E-value=2e-25  Score=218.53  Aligned_cols=156  Identities=22%  Similarity=0.445  Sum_probs=127.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||++|++||||||+|||++.++.+||+|||+++......  .......++..|+|||.+.+
T Consensus       121 ~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  200 (283)
T cd05090         121 LDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMY  200 (283)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhcc
Confidence            3567788999999999999999999999999999999999999999999997653221  11233445678999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |.+||.+.........+......  ..+..+++.+++++.+||..+|++||++
T Consensus       201 -----~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~  273 (283)
T cd05090         201 -----GKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLL--PCSEDCPPRMYSLMTECWQEGPSRRPRF  273 (283)
T ss_pred             -----CCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcccCcccCcCH
Confidence                 567899999999999999998 99999887665554444433322  2345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       274 ~~i~~~  279 (283)
T cd05090         274 KDIHTR  279 (283)
T ss_pred             HHHHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG4236|consensus

Probab=99.93  E-value=7.2e-27  Score=231.02  Aligned_cols=161  Identities=27%  Similarity=0.509  Sum_probs=134.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      |+|..-++++.||+.||+|||-+||+|+||||+|||+.+..   ++||||||+++.+... .-..+.+|||.|+|||+++
T Consensus       661 L~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk-sFRrsVVGTPAYLaPEVLr  739 (888)
T KOG4236|consen  661 LPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK-SFRRSVVGTPAYLAPEVLR  739 (888)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchh-hhhhhhcCCccccCHHHHh
Confidence            67888999999999999999999999999999999997654   5999999999988764 3456779999999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-CCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-PPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     ++|+.+-|+||+|||+|--+.|..||......  ..+|-.. -..+..+...+++++.+||..+|+..-.+|.|
T Consensus       740 n-----kGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdI--ndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRys  812 (888)
T KOG4236|consen  740 N-----KGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDI--NDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYS  812 (888)
T ss_pred             h-----ccccccccceeeeEEEEEEecccccCCCccch--hHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcc
Confidence            7     78999999999999999999999999764432  2222111 11111123456899999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      +++.|.|||+++.
T Consensus       813 vdk~lsh~Wlq~y  825 (888)
T KOG4236|consen  813 VDKSLSHPWLQDY  825 (888)
T ss_pred             hHhhccchhhhcc
Confidence            9999999999875

>KOG0586|consensus

Probab=99.93  E-value=1.8e-26  Score=233.66  Aligned_cols=164  Identities=26%  Similarity=0.449  Sum_probs=141.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +.|.+++.++.|++.|++|||+++|||||||++|||++.+..+||+|||++..+... ....+++|++.|.|||++.+. 
T Consensus       152 ~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~-~~lqt~cgsppyAaPEl~~g~-  229 (596)
T KOG0586|consen  152 MKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG-LMLQTFCGSPPYAAPELFNGK-  229 (596)
T ss_pred             chhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeeccc-ccccccCCCCCccChHhhcCc-
Confidence            457889999999999999999999999999999999999999999999999988744 566789999999999999873 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..-++.+|+||+|+++|.|++|..||.+.+......+.+.+.   +..+..++.++.++|+++|.++|.+|++++++
T Consensus       230 ---~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk---~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqi  303 (596)
T KOG0586|consen  230 ---KYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGK---YRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQI  303 (596)
T ss_pred             ---ccCCcceehhhhhhhheeeeecccccCCcccccccchheeee---ecccceeechhHHHHHHhhccCccccCCHHHh
Confidence               334679999999999999999999999887665555555432   23455679999999999999999999999999


Q ss_pred             hcCcCCCCCCCC
Q psy9090         161 LEHPFITSLPEN  172 (488)
Q Consensus       161 l~hp~f~~~~~~  172 (488)
                      +.|+|.......
T Consensus       304 m~~~W~n~~~~~  315 (596)
T KOG0586|consen  304 MKDRWRNDLLEA  315 (596)
T ss_pred             hhhcccchhhhh
Confidence            999999765443

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.93  E-value=2.1e-25  Score=217.77  Aligned_cols=156  Identities=26%  Similarity=0.480  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccccC--ccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~   75 (488)
                      +++..+..++.||+.||+|||+++++||||||+||+++.++   .+||+|||+++.......  .......++.|+|||+
T Consensus       113 ~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  192 (277)
T cd05036         113 LTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEA  192 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHH
Confidence            46788899999999999999999999999999999998765   599999999876532111  1112233567999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +.+     ..++.++|||||||++|+|++ |..||...........+......  ..+..++..+.+++.+||..+|++|
T Consensus       193 ~~~-----~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~cl~~~p~~R  265 (277)
T cd05036         193 FLD-----GIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRL--DPPKGCPGPVYRIMTDCWQHTPEDR  265 (277)
T ss_pred             Hhc-----CCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcCCCcccC
Confidence            975     568899999999999999996 99999887765555444433222  2345678999999999999999999


Q ss_pred             CCHHHHhcC
Q psy9090         155 PYMSELLEH  163 (488)
Q Consensus       155 ps~~ell~h  163 (488)
                      ||+.++++|
T Consensus       266 ps~~~vl~~  274 (277)
T cd05036         266 PNFATILER  274 (277)
T ss_pred             cCHHHHHHH
Confidence            999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=4.8e-26  Score=253.53  Aligned_cols=160  Identities=19%  Similarity=0.190  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc-------------------EEEEecCCcccccccc---
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-------------------VKIVDFGLSRETANTF---   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~-------------------vkL~Dfg~a~~~~~~~---   58 (488)
                      |++.+++.+++||+.||+|||++||+||||||+|||++..|.                   +|++|||+++......   
T Consensus        77 ~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~  156 (793)
T PLN00181         77 VDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERR  156 (793)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccc
Confidence            578899999999999999999999999999999999965444                   5555555554321000   


Q ss_pred             -------------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC
Q psy9090          59 -------------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP  125 (488)
Q Consensus        59 -------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~  125 (488)
                                   .......||+.|+|||++.+     ..|+.++|||||||++|||++|.+|+.....  ....+....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~-----~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~--~~~~~~~~~  229 (793)
T PLN00181        157 IEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNG-----SSSNCASDVYRLGVLLFELFCPVSSREEKSR--TMSSLRHRV  229 (793)
T ss_pred             hhhhhccccCCCcccccccCCCcceEChhhhcc-----CCCCchhhhhhHHHHHHHHhhCCCchhhHHH--HHHHHHHhh
Confidence                         00112358899999999876     6689999999999999999999998764321  222222222


Q ss_pred             CCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       126 ~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      .++..  ....+...+++.+||.++|.+||++.++++||||...
T Consensus       230 ~~~~~--~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        230 LPPQI--LLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             cChhh--hhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence            12111  1124566789999999999999999999999999864

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.93  E-value=2e-25  Score=222.40  Aligned_cols=156  Identities=26%  Similarity=0.419  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc--cccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++........  .....++..|+|||.+..
T Consensus       106 ~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~  185 (316)
T cd05108         106 IGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILH  185 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhcc
Confidence            356788899999999999999999999999999999999999999999999865432111  112234568999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+...... ..+..... ..+.+..++..+.+++.+||..+|.+||++
T Consensus       186 -----~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rps~  258 (316)
T cd05108         186 -----RIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-SSILEKGE-RLPQPPICTIDVYMIMVKCWMIDADSRPKF  258 (316)
T ss_pred             -----CCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHH-HHHHhCCC-CCCCCCCCCHHHHHHHHHHccCChhhCcCH
Confidence                 568899999999999999987 9999987765443 33333221 222345568899999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++.+
T Consensus       259 ~~l~~~  264 (316)
T cd05108         259 RELIIE  264 (316)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=2.3e-25  Score=214.78  Aligned_cols=152  Identities=25%  Similarity=0.462  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.+||+|||++......   .....++..|+|||++..  
T Consensus        99 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~--  173 (256)
T cd05082          99 LGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALRE--  173 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceecccc---CCCCccceeecCHHHHcc--
Confidence            367888999999999999999999999999999999999999999999998754332   123345568999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+|||||++|+|++ |..||...........+.....+  ..+..+++.+.+++.+||..+|++|||+.+
T Consensus       174 ---~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  248 (256)
T cd05082         174 ---KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM--DAPDGCPPVVYDVMKQCWHLDAATRPSFLQ  248 (256)
T ss_pred             ---CCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence               567889999999999999997 99999877655554444433222  234567899999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       249 l~~  251 (256)
T cd05082         249 LRE  251 (256)
T ss_pred             HHH
Confidence            975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.93  E-value=2.8e-25  Score=214.54  Aligned_cols=155  Identities=27%  Similarity=0.436  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||++..............++..|+|||.+..  
T Consensus       101 ~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~--  178 (261)
T cd05148         101 LPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASH--  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHcc--
Confidence            467788999999999999999999999999999999999999999999998765433222233445678999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+||||+++|+|++ |..||...........+.....+  ..+...++.+.++|.+||..+|.+|||+.+
T Consensus       179 ---~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  253 (261)
T cd05148         179 ---GTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRM--PCPAKCPQEIYKIMLECWAAEPEDRPSFKA  253 (261)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcC--CCCCCCCHHHHHHHHHHcCCCchhCcCHHH
Confidence               567889999999999999998 89999887766555555543222  234567899999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       254 l~~  256 (261)
T cd05148         254 LRE  256 (261)
T ss_pred             HHH
Confidence            875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.93  E-value=1.9e-25  Score=219.67  Aligned_cols=156  Identities=28%  Similarity=0.481  Sum_probs=126.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.......  ......++..|+|||++.+
T Consensus       129 l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  208 (293)
T cd05053         129 LTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFD  208 (293)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhcc
Confidence            46778899999999999999999999999999999999999999999999876543211  1122234567999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|++++ |..||...........+.....+  ..+...+..+.+|+.+||..+|++|||+
T Consensus       209 -----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  281 (293)
T cd05053         209 -----RVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYRM--EKPQNCTQELYHLMRDCWHEVPSQRPTF  281 (293)
T ss_pred             -----CCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcccCcccCcCH
Confidence                 568889999999999999997 99999887765554444443322  2345668999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       282 ~eil~~  287 (293)
T cd05053         282 KQLVED  287 (293)
T ss_pred             HHHHHH
Confidence            999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.93  E-value=2.1e-25  Score=216.15  Aligned_cols=156  Identities=25%  Similarity=0.516  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++..............|++.|+|||.+.+  
T Consensus       103 ~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~--  180 (267)
T cd08229         103 IPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE--  180 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcC--
Confidence            477889999999999999999999999999999999999999999999998765433233334578899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH--HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                         ..++.++|+||+|+++|+|++|..||.+....  .....+.....++. .+...++.+++++.+||..+|++|||+.
T Consensus       181 ---~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~  256 (267)
T cd08229         181 ---NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPL-PSDHYSEELRQLVNMCINPDPEKRPDIT  256 (267)
T ss_pred             ---CCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCC-CcccccHHHHHHHHHhcCCCcccCCCHH
Confidence               56788999999999999999999999754322  22222222222221 2345788999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       257 ~i~~  260 (267)
T cd08229         257 YVYD  260 (267)
T ss_pred             HHHH
Confidence            8764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.93  E-value=3.6e-25  Score=216.51  Aligned_cols=155  Identities=25%  Similarity=0.400  Sum_probs=125.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||++|++||||||+|||++.++.+||+|||+++.......  ......++..|+|||.+.+
T Consensus       106 ~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~  185 (279)
T cd05111         106 LDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILF  185 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhcc
Confidence            46888999999999999999999999999999999999999999999999875432211  1223456778999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|++++ |..||.+.........+..+..+  ..+...+..+.+++.+||..+|++|||+
T Consensus       186 -----~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~c~~~~p~~Rps~  258 (279)
T cd05111         186 -----GRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERL--AQPQICTIDVYMVMVKCWMIDENVRPTF  258 (279)
T ss_pred             -----CCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcC--CCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence                 568899999999999999998 99999887654433333222222  2234567889999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       259 ~el~~  263 (279)
T cd05111         259 KELAN  263 (279)
T ss_pred             HHHHH
Confidence            99876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.93  E-value=1.5e-25  Score=221.90  Aligned_cols=155  Identities=27%  Similarity=0.447  Sum_probs=123.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+++.++.++.||+.||+|||++|++||||||+|||++.++.+||+|||++...... .......++..|+|||.+.+  
T Consensus       121 l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  197 (303)
T cd05088         121 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNY--  197 (303)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCccccCcccchh-hhcccCCCcccccCHHHHhc--
Confidence            467889999999999999999999999999999999999999999999998643221 11112234567999998865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||||||++|+|++ |.+||...........+......  ..+...++.+.+|+.+||..+|++||++++
T Consensus       198 ---~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  272 (303)
T cd05088         198 ---SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL--EKPLNCDDEVYDLMRQCWREKPYERPSFAQ  272 (303)
T ss_pred             ---cCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcC--CCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence               567889999999999999998 99999877655444433322111  123456889999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      ++.+
T Consensus       273 il~~  276 (303)
T cd05088         273 ILVS  276 (303)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=2.9e-25  Score=215.91  Aligned_cols=154  Identities=27%  Similarity=0.450  Sum_probs=123.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++++.+..++.|++.||+|||++|++||||||+||+++.++.+||+|||++...... ........++.|+|||++..  
T Consensus       109 l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~-~~~~~~~~~~~y~apE~~~~--  185 (270)
T cd05047         109 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNY--  185 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCccccchh-hhccCCCCccccCChHHHcc--
Confidence            467888999999999999999999999999999999999999999999998533211 11112233567999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+|||||++|+|++ |..||.+.........+......  ..+...+.++.+++.+||..+|.+|||+.+
T Consensus       186 ---~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  260 (270)
T cd05047         186 ---SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL--EKPLNCDDEVYDLMRQCWREKPYERPSFAQ  260 (270)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCC--CCCCcCCHHHHHHHHHHcccChhhCCCHHH
Confidence               568889999999999999997 99999877665555444433222  233456889999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      ++.
T Consensus       261 il~  263 (270)
T cd05047         261 ILV  263 (270)
T ss_pred             HHH
Confidence            875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=3.8e-25  Score=213.70  Aligned_cols=155  Identities=26%  Similarity=0.449  Sum_probs=126.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.||+|||++|++||||||+||+++.++.++|+|||++........ ......++..|+|||.+.+ 
T Consensus        99 ~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  177 (260)
T cd05070          99 LKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY-  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhc-
Confidence            46788999999999999999999999999999999999999999999999875433211 1122235567999999865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |.+||.+.........+.....+  ..+...+..+.+++.+||..+|++|||+.
T Consensus       178 ----~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  251 (260)
T cd05070         178 ----GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRM--PCPQDCPISLHELMLQCWKKDPEERPTFE  251 (260)
T ss_pred             ----CCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCCcCCHHHHHHHHHHcccCcccCcCHH
Confidence                567889999999999999999 99999887766666655544322  23456789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++.+
T Consensus       252 ~l~~  255 (260)
T cd05070         252 YLQS  255 (260)
T ss_pred             HHHH
Confidence            8864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.93  E-value=3.5e-25  Score=213.73  Aligned_cols=156  Identities=27%  Similarity=0.489  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++|++|+||||+||+++.++.+||+|||.++........ .....++..|+|||.+.+ 
T Consensus        97 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~-  175 (256)
T cd05113          97 FQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLY-  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhc-
Confidence            468889999999999999999999999999999999999999999999998754332111 112235567999999975 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |..||...........+.....+  ..+...+..+++++.+||..+|.+||++.
T Consensus       176 ----~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  249 (256)
T cd05113         176 ----SKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRL--YRPHLASEKVYAIMYSCWHEKAEERPTFQ  249 (256)
T ss_pred             ----CcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence                568889999999999999998 99999877766555555544332  23455689999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++.+
T Consensus       250 ~ll~~  254 (256)
T cd05113         250 QLLSS  254 (256)
T ss_pred             HHHHh
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.93  E-value=4.3e-25  Score=213.41  Aligned_cols=155  Identities=26%  Similarity=0.443  Sum_probs=127.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||.|||+.|++|+||||+||+++.++.++|+|||++........ ......++..|+|||.+.+ 
T Consensus        99 ~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~-  177 (260)
T cd05069          99 LKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY-  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhcc-
Confidence            35778899999999999999999999999999999999999999999999875533211 1122345678999998865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |..||.+........++.....+.  .+...+..+++++.+||..+|.+||+++
T Consensus       178 ----~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05069         178 ----GRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMP--CPQGCPESLHELMKLCWKKDPDERPTFE  251 (260)
T ss_pred             ----CCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCcccCHHHHHHHHHHccCCcccCcCHH
Confidence                567889999999999999999 999998877666666555443322  3456789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       252 ~i~~  255 (260)
T cd05069         252 YIQS  255 (260)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.93  E-value=3.9e-25  Score=213.21  Aligned_cols=156  Identities=25%  Similarity=0.468  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.+||+|||+++........ .....++..|+|||.+.+ 
T Consensus        97 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~-  175 (256)
T cd05059          97 LGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDY-  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhcc-
Confidence            467889999999999999999999999999999999999999999999998755332111 111223457999999876 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |..||...........+......  ..+..+++.+.+++.+||..+|++|||+.
T Consensus       176 ----~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rpt~~  249 (256)
T cd05059         176 ----SRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRL--YRPKLAPTEVYTIMYSCWHEKPEDRPAFK  249 (256)
T ss_pred             ----CCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHhcCChhhCcCHH
Confidence                568889999999999999998 89999877665555555443222  23456799999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      ++++.
T Consensus       250 ~~l~~  254 (256)
T cd05059         250 KLLSQ  254 (256)
T ss_pred             HHHHH
Confidence            99863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.93  E-value=4.4e-25  Score=212.78  Aligned_cols=155  Identities=29%  Similarity=0.482  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.||.|||++|++||||||+||+++.++.+||+|||.++....... ......++..|+|||.+.+ 
T Consensus        97 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  175 (256)
T cd05114          97 LSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNF-  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhccc-
Confidence            46788999999999999999999999999999999999999999999999875432211 1122235568999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||+|+++|+|++ |+.||...........+.....+.  .+...+..+.+++.+||..+|.+|||++
T Consensus       176 ----~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~li~~c~~~~p~~Rps~~  249 (256)
T cd05114         176 ----SKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLY--RPKLASMTVYEVMYSCWHEKPEGRPTFA  249 (256)
T ss_pred             ----CccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHccCCcccCcCHH
Confidence                567889999999999999999 999998887766666665543322  3445688999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       250 ~l~~  253 (256)
T cd05114         250 ELLR  253 (256)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=3e-25  Score=217.46  Aligned_cols=160  Identities=35%  Similarity=0.668  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.+|.|||+ ++++||||+|+||+++.++.++|+|||++......  ......|+..|+|||++.+ 
T Consensus       100 ~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~--~~~~~~~~~~~~aPE~~~~-  176 (284)
T cd06620         100 IPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS--IADTFVGTSTYMSPERIQG-  176 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhh--ccCccccCcccCCHHHHcc-
Confidence            4678899999999999999997 69999999999999999999999999998654322  2234578999999999865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-----------HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcc
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-----------RALFQIVRNPPPGLYRASNWSQHYVDFIAECLE  148 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~  148 (488)
                          ..++.++|+||+||++|++++|..||......           .....+.....+.. ....++..+.+|+.+||.
T Consensus       177 ----~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~  251 (284)
T cd06620         177 ----GKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRL-PSSDFPEDLRDFVDACLL  251 (284)
T ss_pred             ----CCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCC-CchhcCHHHHHHHHHHhc
Confidence                46788999999999999999999999765431           22222332222221 122367899999999999


Q ss_pred             cCCCCCCCHHHHhcCcCCCC
Q psy9090         149 KNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       149 ~dP~~Rps~~ell~hp~f~~  168 (488)
                      .||++|||+.++++||||.+
T Consensus       252 ~dp~~Rpt~~e~~~~~~~~~  271 (284)
T cd06620         252 KDPTERPTPQQLCAMPPFIQ  271 (284)
T ss_pred             CCcccCcCHHHHhcCccccc
Confidence            99999999999999999965

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.93  E-value=3.9e-25  Score=214.66  Aligned_cols=155  Identities=22%  Similarity=0.360  Sum_probs=126.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.++++|||.+........ ......+++.|+|||++.+ 
T Consensus       104 l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  182 (266)
T cd05064         104 LVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQY-  182 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhh-
Confidence            57889999999999999999999999999999999999999999999998765322111 1112335678999999876 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||+||++|++++ |..||...........+......  +.+..++..+.+++.+||..+|.+||+++
T Consensus       183 ----~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~c~~~~p~~RP~~~  256 (266)
T cd05064         183 ----HHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRL--PAPRNCPNLLHQLMLDCWQKERGERPRFS  256 (266)
T ss_pred             ----CCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHcCCCchhCCCHH
Confidence                568899999999999999764 99999888766655555444322  23567889999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       257 ~i~~  260 (266)
T cd05064         257 QIHS  260 (266)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.93  E-value=4.1e-25  Score=213.47  Aligned_cols=155  Identities=26%  Similarity=0.486  Sum_probs=127.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.++..++.|++.||+|||++|++||||||+||+++.++.++|+|||++....... .......++..|+|||++.. 
T Consensus        99 ~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~-  177 (260)
T cd05067          99 LTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY-  177 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhcc-
Confidence            4677889999999999999999999999999999999999999999999987654221 11223345678999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|++++ |.+||.+.........+......  ..+...+.++.+++.+||..+|++||+++
T Consensus       178 ----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05067         178 ----GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRM--PRPDNCPEELYELMRLCWKEKPEERPTFE  251 (260)
T ss_pred             ----CCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence                567889999999999999998 99999887766555555443322  23456788999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      +++.
T Consensus       252 ~l~~  255 (260)
T cd05067         252 YLRS  255 (260)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.92  E-value=6.4e-25  Score=211.52  Aligned_cols=156  Identities=30%  Similarity=0.513  Sum_probs=127.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++........   ......++..|+|||.+.
T Consensus        94 ~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~  173 (257)
T cd05040          94 FLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLR  173 (257)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhc
Confidence            46788999999999999999999999999999999999999999999999876543211   112345677899999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|+|||||++|+|++ |..||......+....+.... .....+...+..+.+++.+||..+|++|||
T Consensus       174 ~-----~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  247 (257)
T cd05040         174 T-----RTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEG-ERLERPEACPQDIYNVMLQCWAHNPADRPT  247 (257)
T ss_pred             c-----cCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcC-CcCCCCccCCHHHHHHHHHHCCCCcccCCC
Confidence            5     568889999999999999998 999998777666555544322 222234557899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       248 ~~~~~~  253 (257)
T cd05040         248 FAALRE  253 (257)
T ss_pred             HHHHHH
Confidence            999976

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.92  E-value=4.7e-25  Score=211.95  Aligned_cols=155  Identities=26%  Similarity=0.447  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc--ccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK--KTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~--~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++..........  ....++..|+|||.+.+
T Consensus        91 ~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  170 (252)
T cd05084          91 LKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNY  170 (252)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcC
Confidence            4678899999999999999999999999999999999999999999999987543211110  11122456999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||...........+......  ..+..++..+.+++.+||..+|++|||+
T Consensus       171 -----~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  243 (252)
T cd05084         171 -----GRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRL--PCPELCPDAVYRLMERCWEYDPGQRPSF  243 (252)
T ss_pred             -----CCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCC--CCcccCCHHHHHHHHHHcCCChhhCcCH
Confidence                 567889999999999999997 99999776655444444333222  2345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       244 ~~~~~  248 (252)
T cd05084         244 STVHQ  248 (252)
T ss_pred             HHHHH
Confidence            99874

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.92  E-value=5.1e-25  Score=212.85  Aligned_cols=155  Identities=27%  Similarity=0.458  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||+++++||||||+||+++.++.++|+|||++........ ......++..|+|||.+.. 
T Consensus       100 ~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  178 (261)
T cd05072         100 VLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF-  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhcc-
Confidence            35677889999999999999999999999999999999999999999999976543211 1122345678999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+|||||++|+|++ |..||...........+......  +....++..+.+++.+||..+|++||+++
T Consensus       179 ----~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  252 (261)
T cd05072         179 ----GSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRM--PRMENCPDELYDIMKTCWKEKAEERPTFD  252 (261)
T ss_pred             ----CCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHccCCcccCcCHH
Confidence                567889999999999999998 99999887766655555443322  23346789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       253 ~i~~  256 (261)
T cd05072         253 YLQS  256 (261)
T ss_pred             HHHH
Confidence            9865

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.92  E-value=5e-25  Score=216.56  Aligned_cols=155  Identities=27%  Similarity=0.473  Sum_probs=125.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.|++.||.|||++|++||||||+|||++.++.+||+|||+++.......  ......++..|+|||.+.+
T Consensus       124 l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~  203 (290)
T cd05045         124 LTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFD  203 (290)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHcc
Confidence            45778899999999999999999999999999999999999999999999875432211  1122345678999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||.+..+.............  ..+..++..+.+++.+||..+|++||++
T Consensus       204 -----~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~cl~~~P~~Rp~~  276 (290)
T cd05045         204 -----HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRM--ERPENCSEEMYNLMLTCWKQEPDKRPTF  276 (290)
T ss_pred             -----CCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCC--CCCCCCCHHHHHHHHHHccCCcccCCCH
Confidence                 567889999999999999998 99999887765544443332222  2345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       277 ~~i~~  281 (290)
T cd05045         277 ADISK  281 (290)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.92  E-value=5e-25  Score=213.63  Aligned_cols=156  Identities=25%  Similarity=0.445  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc--cccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.|++.||.|||++||+||||||+||+++.++.++|+|||+++........  .....+++.|+|||.+.+
T Consensus       103 ~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~  182 (266)
T cd05033         103 FTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAY  182 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhcc
Confidence            467889999999999999999999999999999999999999999999999876421111  112234578999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||...........+......  +.+..+++.+.+++.+||..+|++||++
T Consensus       183 -----~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rp~~  255 (266)
T cd05033         183 -----RKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRL--PPPMDCPSALYQLMLDCWQKDRNERPTF  255 (266)
T ss_pred             -----CCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence                 567889999999999999998 99999877766655555443222  2345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       256 ~ei~~~  261 (266)
T cd05033         256 SQIVST  261 (266)
T ss_pred             HHHHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.92  E-value=4.8e-25  Score=217.04  Aligned_cols=157  Identities=26%  Similarity=0.426  Sum_probs=125.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.|++.||+|||++|++||||||+||+++.++.++|+|||+++......  .......+++.|+|||.+.+
T Consensus       127 ~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (296)
T cd05051         127 LSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLL  206 (296)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhc
Confidence            4678899999999999999999999999999999999999999999999987543221  11233456778999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc--CCCCCCCCChHHHHHHHHhC-----CCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD--GKPPFEDMHPTRALFQIVRN-----PPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt--g~~Pf~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                           ..++.++|||||||++|+|++  |..||........+......     .......+...+.++.+++.+||..+|
T Consensus       207 -----~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p  281 (296)
T cd05051         207 -----GKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDE  281 (296)
T ss_pred             -----CCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccCh
Confidence                 468899999999999999987  78888776655544444321     111122344567899999999999999


Q ss_pred             CCCCCHHHHhc
Q psy9090         152 EHRPYMSELLE  162 (488)
Q Consensus       152 ~~Rps~~ell~  162 (488)
                      .+|||+.++++
T Consensus       282 ~~Rpt~~el~~  292 (296)
T cd05051         282 EDRPTFREIHL  292 (296)
T ss_pred             hcCCCHHHHHH
Confidence            99999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.92  E-value=5.7e-25  Score=212.51  Aligned_cols=154  Identities=25%  Similarity=0.456  Sum_probs=122.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----CccccccCCCccccchhhc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----~~~~~~~gt~~y~aPE~l~   77 (488)
                      ++..+..++.||+.||+|||+++++||||||+|||++.++.+||+|||+++......    .......+++.|+|||.+.
T Consensus        96 ~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  175 (262)
T cd05058          96 TVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQ  175 (262)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhc
Confidence            456778899999999999999999999999999999999999999999987543211    1112334567899999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     ..++.++|||||||++|+|++ |.+||...........+.....+.  .+...++.+.+++.+||..+|++||+
T Consensus       176 ~-----~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~  248 (262)
T cd05058         176 T-----QKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLL--QPEYCPDPLYEVMLSCWHPKPEMRPT  248 (262)
T ss_pred             c-----CccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCC--CCCcCCHHHHHHHHHHcCCChhhCCC
Confidence            5     567889999999999999999 567777766555444444332222  23456889999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.+++.
T Consensus       249 ~~~il~  254 (262)
T cd05058         249 FSELVS  254 (262)
T ss_pred             HHHHHH
Confidence            999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.92  E-value=6.6e-25  Score=218.42  Aligned_cols=155  Identities=28%  Similarity=0.452  Sum_probs=124.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc--cccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||.|||++|++||||||+|||++.++.+||+|||+++........  .....+++.|+|||++.+
T Consensus       131 l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  210 (314)
T cd05099         131 LSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFD  210 (314)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHcc
Confidence            356778899999999999999999999999999999999999999999999765322111  112234467999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||...........+......  ..+...+.++++++.+||..+|++|||+
T Consensus       211 -----~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~  283 (314)
T cd05099         211 -----RVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHRM--DKPSNCTHELYMLMRECWHAVPTQRPTF  283 (314)
T ss_pred             -----CCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence                 568889999999999999999 89999887655544444433222  2345678899999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       284 ~~ll~  288 (314)
T cd05099         284 KQLVE  288 (314)
T ss_pred             HHHHH
Confidence            99886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.92  E-value=6.6e-25  Score=217.30  Aligned_cols=156  Identities=28%  Similarity=0.470  Sum_probs=126.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      ++...+..++.||+.||.|||++|++||||||+||+++.++.+||+|||+++.......  ......+++.|+|||++.+
T Consensus       134 ~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  213 (304)
T cd05101         134 MTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFD  213 (304)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhcc
Confidence            35667889999999999999999999999999999999999999999999876543211  1222345678999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++|+|++ |..||.+.........+......  ..+...+..+++|+.+||..+|.+|||+
T Consensus       214 -----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rps~  286 (304)
T cd05101         214 -----RVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRM--DKPANCTNELYMMMRDCWHAIPSHRPTF  286 (304)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcccChhhCCCH
Confidence                 568889999999999999998 88999887765555544433322  2345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .++++.
T Consensus       287 ~e~l~~  292 (304)
T cd05101         287 KQLVED  292 (304)
T ss_pred             HHHHHH
Confidence            999863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.92  E-value=6.2e-25  Score=217.47  Aligned_cols=156  Identities=28%  Similarity=0.486  Sum_probs=126.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||.|||+++++|+||||+|||++.++.++|+|||+++.......  ......+++.|+|||.+.+
T Consensus       138 l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  217 (302)
T cd05055         138 LTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFN  217 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhcc
Confidence            46889999999999999999999999999999999999999999999999875533211  1223345778999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||+||++|+|++ |..||................... ..+...++.+.+++.+||..+|++|||+
T Consensus       218 -----~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~cl~~~p~~Rpt~  291 (302)
T cd05055         218 -----CVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRM-AQPEHAPAEIYDIMKTCWDADPLKRPTF  291 (302)
T ss_pred             -----CCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcC-CCCCCCCHHHHHHHHHHcCCCchhCcCH
Confidence                 567889999999999999998 999998776555554544433221 2334568999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .+++.
T Consensus       292 ~ell~  296 (302)
T cd05055         292 KQIVQ  296 (302)
T ss_pred             HHHHH
Confidence            99975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.92  E-value=4.7e-25  Score=218.71  Aligned_cols=156  Identities=27%  Similarity=0.443  Sum_probs=124.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc--cccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~l~~   78 (488)
                      ++..++..++.||+.||+|||++|++||||||+||+++.++.+||+|||+++........  .....+++.|+|||++.+
T Consensus       137 l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  216 (307)
T cd05098         137 LSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD  216 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhcc
Confidence            356788999999999999999999999999999999999999999999998755322111  112234568999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |..||.+.........+......  ..+..++.++++++.+||..+|.+|||+
T Consensus       217 -----~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  289 (307)
T cd05098         217 -----RIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRM--DKPSNCTNELYMMMRDCWHAVPSQRPTF  289 (307)
T ss_pred             -----CCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCCC--CCCCcCCHHHHHHHHHHcccChhhCcCH
Confidence                 567889999999999999998 89999876654433333333222  2345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       290 ~evl~~  295 (307)
T cd05098         290 KQLVED  295 (307)
T ss_pred             HHHHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.92  E-value=8.8e-25  Score=211.68  Aligned_cols=155  Identities=26%  Similarity=0.458  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.||+|||+.+++||||||+||+++.++.++|+|||.++....... ......++..|+|||.... 
T Consensus        99 ~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-  177 (262)
T cd05071          99 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY-  177 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhcc-
Confidence            46788899999999999999999999999999999999999999999999875543211 1123345678999998865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+|||||++|+|++ |.+||.+.........+......  ..+...+..+.+++.+||..+|++||++.
T Consensus       178 ----~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rp~~~  251 (262)
T cd05071         178 ----GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM--PCPPECPESLHDLMCQCWRKEPEERPTFE  251 (262)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCC--CCccccCHHHHHHHHHHccCCcccCCCHH
Confidence                568899999999999999999 89999887766655555443222  22456789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       252 ~~~~  255 (262)
T cd05071         252 YLQA  255 (262)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=9.1e-25  Score=211.18  Aligned_cols=155  Identities=25%  Similarity=0.462  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.||.|||++|++||||||+||+++.++.++|+|||+++........ ......+..|+|||.+.+ 
T Consensus       100 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  178 (261)
T cd05068         100 LKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALY-  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCcccccc-
Confidence            467889999999999999999999999999999999999999999999998765432111 111223457999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |+.||.+.........+......  ..+..++..+.+++.+||..+|.+||++.
T Consensus       179 ----~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~Rp~~~  252 (261)
T cd05068         179 ----NRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRM--PCPPGCPKELYDIMLDCWKEDPDDRPTFE  252 (261)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCCcCCHHHHHHHHHHhhcCcccCCCHH
Confidence                567889999999999999999 99999887766666555444322  23456789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      +++.
T Consensus       253 ~l~~  256 (261)
T cd05068         253 TLQW  256 (261)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.92  E-value=7.3e-25  Score=212.09  Aligned_cols=156  Identities=28%  Similarity=0.543  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||+.|++||||+|+||+++.++.++|+|||++..............+++.|+|||.+.+  
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~--  180 (267)
T cd08224         103 IPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE--  180 (267)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhcc--
Confidence            467889999999999999999999999999999999999999999999998765433223344568899999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                         ..++.++|+||+||++|+|++|..||.....  ......+.....++. ....++..+.++|.+||..+|++|||+.
T Consensus       181 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~cl~~~p~~Rp~~~  256 (267)
T cd08224         181 ---NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPL-PADHYSEELRDLVSRCINPDPEKRPDIS  256 (267)
T ss_pred             ---CCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCC-ChhhcCHHHHHHHHHHcCCCcccCCCHH
Confidence               5688899999999999999999999965432  122223333222222 1235788999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       257 ~il~  260 (267)
T cd08224         257 YVLQ  260 (267)
T ss_pred             HHHH
Confidence            9875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.92  E-value=8.2e-25  Score=219.26  Aligned_cols=162  Identities=29%  Similarity=0.548  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||++|++||||+|+||+++.++.++|+|||++.....   ......+++.|+|||.+.+. 
T Consensus       105 ~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~---~~~~~~~~~~y~aPE~~~~~-  180 (328)
T cd07856         105 LEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDP---QMTGYVSTRYYRAPEIMLTW-  180 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCC---CcCCCcccccccCceeeecc-
Confidence            45778889999999999999999999999999999999999999999999875432   22344678899999987542 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHH---hC--------------------CC--CCC---CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV---RN--------------------PP--PGL---YRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~---~~--------------------~~--~~~---~~~  132 (488)
                         ..++.++|+||+||++|+|++|++||...........+.   ..                    ..  ...   ...
T Consensus       181 ---~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (328)
T cd07856         181 ---QKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKF  257 (328)
T ss_pred             ---CCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHc
Confidence               457889999999999999999999997765422211111   00                    00  000   011


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      ..+++.+.++|++||..+|++|||+++++.||||...
T Consensus       258 ~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~  294 (328)
T cd07856         258 KNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPY  294 (328)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccc
Confidence            3467899999999999999999999999999999754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.92  E-value=1e-24  Score=211.76  Aligned_cols=160  Identities=28%  Similarity=0.453  Sum_probs=123.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......  .......+++.|+|||++...
T Consensus        98 ~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  177 (269)
T cd05042          98 QKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIR  177 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhc
Confidence            456778999999999999999999999999999999999999999999986532211  112233456789999998642


Q ss_pred             cc--CCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCC---CCCCCcCHHHHHHHHHhcccCCCC
Q psy9090          80 HK--EVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGL---YRASNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        80 ~~--~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~li~~~L~~dP~~  153 (488)
                      ..  ....++.++||||+||++|+|++ |..||....................   ..+..+++.+.+++..|+ .||++
T Consensus       178 ~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~  256 (269)
T cd05042         178 GQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPET  256 (269)
T ss_pred             cccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCccc
Confidence            11  12456789999999999999998 8889987776665555554432222   223467888999999998 59999


Q ss_pred             CCCHHHHhc
Q psy9090         154 RPYMSELLE  162 (488)
Q Consensus       154 Rps~~ell~  162 (488)
                      |||++++++
T Consensus       257 Rpt~~~v~~  265 (269)
T cd05042         257 RPTAEEVHE  265 (269)
T ss_pred             ccCHHHHHH
Confidence            999999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG1035|consensus

Probab=99.92  E-value=5.5e-25  Score=236.55  Aligned_cols=160  Identities=25%  Similarity=0.450  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccc------------------cccCccccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA------------------NTFDKKKTF   64 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~------------------~~~~~~~~~   64 (488)
                      ...+|.+++||++||.|+|+.|||||||||.||+++.++.|||+|||+++...                  ......+..
T Consensus       696 ~d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~  775 (1351)
T KOG1035|consen  696 RDEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQ  775 (1351)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccc
Confidence            35789999999999999999999999999999999999999999999997511                  001123566


Q ss_pred             cCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCC--CCCCcCHHHHHH
Q psy9090          65 LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY--RASNWSQHYVDF  142 (488)
Q Consensus        65 ~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~l  142 (488)
                      +||..|+|||++.+...  ..|+.|+||||||++++||+.   ||...-........++.+.-+.+  ...+--+.-..+
T Consensus       776 VGTalYvAPEll~~~~~--~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~sl  850 (1351)
T KOG1035|consen  776 VGTALYVAPELLSDTSS--NKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASL  850 (1351)
T ss_pred             cceeeeecHHHhccccc--ccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCCcccccccchHHHHH
Confidence            89999999999976421  469999999999999999974   46443333333333333222221  011123455789


Q ss_pred             HHHhcccCCCCCCCHHHHhcCcCCC
Q psy9090         143 IAECLEKNPEHRPYMSELLEHPFIT  167 (488)
Q Consensus       143 i~~~L~~dP~~Rps~~ell~hp~f~  167 (488)
                      |+.||+.||.+|||+.++|++.|+-
T Consensus       851 I~~Ll~hdP~kRPtA~eLL~s~llp  875 (1351)
T KOG1035|consen  851 IRWLLSHDPSKRPTATELLNSELLP  875 (1351)
T ss_pred             HHHHhcCCCccCCCHHHHhhccCCC
Confidence            9999999999999999999999996

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.92  E-value=1.6e-24  Score=208.37  Aligned_cols=155  Identities=30%  Similarity=0.491  Sum_probs=127.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccc-cccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK-TFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~-~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||++||++|++|+||||+||+++.++.++|+|||++........... ...+++.|+|||.+.+ 
T Consensus       100 ~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~-  178 (258)
T smart00219      100 LSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKD-  178 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhcc-
Confidence            47889999999999999999999999999999999999999999999999876543311111 2236789999999864 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||+|+++|+|++ |.+||...........+.......  .+...+..+.+++.+||..+|++|||+.
T Consensus       179 ----~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rpt~~  252 (258)
T smart00219      179 ----GKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLP--KPENCPPEIYKLMLQCWAEDPEDRPTFS  252 (258)
T ss_pred             ----CCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCC--CCCcCCHHHHHHHHHHCcCChhhCcCHH
Confidence                567889999999999999998 899998776655555555443332  3445789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       253 ~ll~  256 (258)
T smart00219      253 ELVE  256 (258)
T ss_pred             HHHh
Confidence            9986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.92  E-value=1.8e-24  Score=207.60  Aligned_cols=155  Identities=26%  Similarity=0.447  Sum_probs=125.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.+|.|||++|++||||||+||+++.++.+||+|||++......... .....+++.|+|||++.+ 
T Consensus        90 ~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  168 (250)
T cd05085          90 LKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNY-  168 (250)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhcc-
Confidence            467888999999999999999999999999999999999999999999998654322111 112234567999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||+|+++|++++ |..||...........+......  ..+..++..+.+++.+||..+|++||++.
T Consensus       169 ----~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  242 (250)
T cd05085         169 ----GRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRM--SCPQKCPDDVYKVMQRCWDYKPENRPKFS  242 (250)
T ss_pred             ----CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcccCcccCCCHH
Confidence                557889999999999999998 99999887766555555443322  23456789999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       243 ~l~~  246 (250)
T cd05085         243 ELQK  246 (250)
T ss_pred             HHHH
Confidence            9875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.92  E-value=1.1e-24  Score=212.78  Aligned_cols=155  Identities=27%  Similarity=0.450  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++..++.++.||+.||+|||+++++||||||+||+++.++.+||+|||+++.......  ......++..|+|||++.+
T Consensus       114 l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~  193 (280)
T cd05043         114 LSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVN  193 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhc
Confidence            46788999999999999999999999999999999999999999999999875532211  1122345668999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|++++ |++||....+......+.......  .+...++.+.+++.+||..+|++|||+
T Consensus       194 -----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~  266 (280)
T cd05043         194 -----KEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLA--QPINCPDELFAVMACCWALDPEERPSF  266 (280)
T ss_pred             -----CCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCC--CCCcCCHHHHHHHHHHcCCChhhCCCH
Confidence                 567899999999999999998 999998876655444333332222  234568999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       267 ~~~~~  271 (280)
T cd05043         267 SQLVQ  271 (280)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.92  E-value=1.1e-24  Score=213.19  Aligned_cols=156  Identities=27%  Similarity=0.434  Sum_probs=121.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---cccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.|++.||.|||++|++||||||+||+++.++.++|+|||+++........   .....++..|+|||.+.
T Consensus       104 l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~  183 (283)
T cd05080         104 LNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLK  183 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhc
Confidence            578899999999999999999999999999999999999999999999998765432111   12234566799999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH--------------HHHHHHhCCCCCCCCCCCcCHHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR--------------ALFQIVRNPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~--------------~~~~~~~~~~~~~~~~~~~s~~~~~li  143 (488)
                      .     ..++.++||||||+++|+|++|..||.......              ......... .....+..++..+.+++
T Consensus       184 ~-----~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li  257 (283)
T cd05080         184 E-----NKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERG-MRLPCPKNCPQEVYILM  257 (283)
T ss_pred             c-----cCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcC-CCCCCCCCCCHHHHHHH
Confidence            5     567889999999999999999999986533210              000111110 11122456789999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      .+||..+|++|||++++++
T Consensus       258 ~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         258 KNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             HHHhccChhhCCCHHHHHH
Confidence            9999999999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.92  E-value=1.2e-24  Score=210.77  Aligned_cols=151  Identities=18%  Similarity=0.448  Sum_probs=119.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc-------EEEEecCCccccccccCccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-------VKIVDFGLSRETANTFDKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~-------vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP   73 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.       ++++|||++.....    .....++..|+||
T Consensus       102 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~----~~~~~~~~~y~aP  177 (262)
T cd05077         102 LTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLS----RQECVERIPWIAP  177 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccC----cccccccccccCh
Confidence            467889999999999999999999999999999999987664       89999998865432    2234578899999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHh-cCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~ell-tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      |.+...    ..++.++|||||||++|+|+ +|..||........ ........   ......++++.+||.+||..||.
T Consensus       178 E~~~~~----~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~li~~cl~~dp~  249 (262)
T cd05077         178 ECVEDS----KNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK-ERFYEGQC---MLVTPSCKELADLMTHCMNYDPN  249 (262)
T ss_pred             hhhcCC----CCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH-HHHHhcCc---cCCCCChHHHHHHHHHHcCCChh
Confidence            988632    55788999999999999997 68889876553322 22222211   12233467899999999999999


Q ss_pred             CCCCHHHHhcC
Q psy9090         153 HRPYMSELLEH  163 (488)
Q Consensus       153 ~Rps~~ell~h  163 (488)
                      +||++.+|+++
T Consensus       250 ~Rp~~~~il~~  260 (262)
T cd05077         250 QRPFFRAIMRD  260 (262)
T ss_pred             hCcCHHHHHHh
Confidence            99999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.6e-24  Score=207.92  Aligned_cols=155  Identities=26%  Similarity=0.444  Sum_probs=124.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc--ccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK--KTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~--~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.|++.+|.|||++|++||||||+||+++.++.++|+|||++..........  ....++..|+|||.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  169 (251)
T cd05041          90 LTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNY  169 (251)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhcc
Confidence            3677889999999999999999999999999999999999999999999987544211111  12233567999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||...........+....  ....+...+..+.+++.+||..+|.+|||+
T Consensus       170 -----~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  242 (251)
T cd05041         170 -----GRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGY--RMPAPQLCPEEIYRLMLQCWAYDPENRPSF  242 (251)
T ss_pred             -----CCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCC--CCCCCccCCHHHHHHHHHHhccChhhCcCH
Confidence                 567889999999999999998 899998776555444443322  222345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       243 ~ell~  247 (251)
T cd05041         243 SEIYN  247 (251)
T ss_pred             HHHHH
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.9e-24  Score=208.18  Aligned_cols=152  Identities=25%  Similarity=0.469  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.|++.||.|||++|++||||||+||+++.++.++|+|||.++.....   .....++..|+|||.+..  
T Consensus        99 ~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~---~~~~~~~~~~~ape~~~~--  173 (256)
T cd05039          99 ITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQG---QDSGKLPVKWTAPEALRE--  173 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccc---cccCCCcccccCchhhcC--
Confidence            467899999999999999999999999999999999999999999999998765322   112334567999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+||||+++|++++ |..||...........+.....+  ..+..+++.+.++|.+||..+|++|||+.+
T Consensus       174 ---~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  248 (256)
T cd05039         174 ---KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRM--EAPEGCPPEVYKVMKDCWELDPAKRPTFKQ  248 (256)
T ss_pred             ---CcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCC--CCccCCCHHHHHHHHHHhccChhhCcCHHH
Confidence               567889999999999999997 99999877665554444433222  234567899999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       249 l~~  251 (256)
T cd05039         249 LRE  251 (256)
T ss_pred             HHH
Confidence            976

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.6e-24  Score=209.17  Aligned_cols=155  Identities=28%  Similarity=0.493  Sum_probs=127.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++....... .......++..|+|||.+.+ 
T Consensus       100 ~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-  178 (261)
T cd05034         100 LRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANY-  178 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhcc-
Confidence            4678889999999999999999999999999999999999999999999987654221 11122234568999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||+|+++|++++ |+.||.+.........+.......  .+...+..+.+++.+||..+|++||+++
T Consensus       179 ----~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rp~~~  252 (261)
T cd05034         179 ----GRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMP--RPPNCPEELYDLMLQCWDKDPEERPTFE  252 (261)
T ss_pred             ----CCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHcccCcccCCCHH
Confidence                567889999999999999998 999998877666666665543222  2345688999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       253 ~l~~  256 (261)
T cd05034         253 YLQS  256 (261)
T ss_pred             HHHH
Confidence            9874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.92  E-value=1.8e-24  Score=213.36  Aligned_cols=157  Identities=24%  Similarity=0.401  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++|++||||||+|||++.++.++|+|||+++.......  ......+++.|++||+..+
T Consensus       127 ~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  206 (296)
T cd05095         127 ISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILL  206 (296)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhc
Confidence            35678999999999999999999999999999999999999999999999875533211  1122334678999998765


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc--CCCCCCCCChHHHHHHHHh-----CCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD--GKPPFEDMHPTRALFQIVR-----NPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt--g~~Pf~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                           ..++.++|+|||||++|+|++  |..||..............     ......+.+..+++.+.+|+.+||..||
T Consensus       207 -----~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p  281 (296)
T cd05095         207 -----GKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNA  281 (296)
T ss_pred             -----CCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCc
Confidence                 568899999999999999998  7889976655443332211     1111122345578999999999999999


Q ss_pred             CCCCCHHHHhc
Q psy9090         152 EHRPYMSELLE  162 (488)
Q Consensus       152 ~~Rps~~ell~  162 (488)
                      .+||++.++++
T Consensus       282 ~~Rp~~~~i~~  292 (296)
T cd05095         282 KERPSFQEIHA  292 (296)
T ss_pred             ccCCCHHHHHH
Confidence            99999999865

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.92  E-value=1.8e-24  Score=208.29  Aligned_cols=152  Identities=24%  Similarity=0.464  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.|++.||.|||++|++||||||+||+++.++.++|+|||++......   ......+..|+|||.+.+  
T Consensus        97 ~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~~y~~pe~~~~--  171 (254)
T cd05083          97 VSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG---VDNSKLPVKWTAPEALKH--  171 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceecccc---CCCCCCCceecCHHHhcc--
Confidence            367788999999999999999999999999999999999999999999998754322   122234568999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+||||+++|+|++ |++||...........+.....+.  .+..++..+.+++.+||..+|.+||++++
T Consensus       172 ---~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  246 (254)
T cd05083         172 ---KKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRME--PPEGCPADVYVLMTSCWETEPKKRPSFHK  246 (254)
T ss_pred             ---CCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCC--CCCcCCHHHHHHHHHHcCCChhhCcCHHH
Confidence               567889999999999999997 999998877655555444432222  24567899999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      ++.
T Consensus       247 l~~  249 (254)
T cd05083         247 LRE  249 (254)
T ss_pred             HHH
Confidence            875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=1.8e-24  Score=214.15  Aligned_cols=156  Identities=26%  Similarity=0.428  Sum_probs=124.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      ++++.+..++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.......  ......++..|+|||.+.+
T Consensus       106 ~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  185 (303)
T cd05110         106 IGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHY  185 (303)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhcc
Confidence            46778899999999999999999999999999999999999999999999976543211  1122345678999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++|+|++ |..||.+...... ..++.... ..+.+..++..+.+++.+||..+|++||++
T Consensus       186 -----~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~  258 (303)
T cd05110         186 -----RKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREI-PDLLEKGE-RLPQPPICTIDVYMVMVKCWMIDADSRPKF  258 (303)
T ss_pred             -----CCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH-HHHHHCCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence                 568899999999999999987 9999987654433 33333221 122345568899999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++..
T Consensus       259 ~~l~~~  264 (303)
T cd05110         259 KELAAE  264 (303)
T ss_pred             HHHHHH
Confidence            998764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.92  E-value=2e-24  Score=212.02  Aligned_cols=155  Identities=27%  Similarity=0.447  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||.|||++|++||||||+||+++.++.++|+|||++.......  .......+++.|+|||.+.+
T Consensus       127 l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (288)
T cd05050         127 LSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFY  206 (288)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhc
Confidence            4577889999999999999999999999999999999999999999999987543221  11122234667999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |..||.+....+....+......  ..+...+..+.+||.+||..+|++|||+
T Consensus       207 -----~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rpt~  279 (288)
T cd05050         207 -----NRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVL--SCPDNCPLELYNLMRLCWSKLPSDRPSF  279 (288)
T ss_pred             -----CCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHcccCcccCCCH
Confidence                 568899999999999999997 88999877766655554433322  2345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       280 ~el~~  284 (288)
T cd05050         280 ASINR  284 (288)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=1.8e-24  Score=210.25  Aligned_cols=156  Identities=23%  Similarity=0.444  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.......  ......+++.|++||.+..
T Consensus       110 l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  189 (273)
T cd05074         110 LPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLAD  189 (273)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhc
Confidence            46778899999999999999999999999999999999999999999999876532211  1223345678999999865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+|||||++|+|++ |.+||.+.........+......  ..+...++.+.+++.+||..+|++|||+
T Consensus       190 -----~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~p~~Rps~  262 (273)
T cd05074         190 -----NVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRL--KQPPDCLEDVYELMCQCWSPEPKCRPSF  262 (273)
T ss_pred             -----CccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence                 567889999999999999999 89999877655444444433222  2234578999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++.+
T Consensus       263 ~~~~~~  268 (273)
T cd05074         263 QHLRDQ  268 (273)
T ss_pred             HHHHHH
Confidence            998763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=2.4e-24  Score=208.94  Aligned_cols=155  Identities=27%  Similarity=0.518  Sum_probs=124.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-----cEEEEecCCcccccccc--CccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-----EVKIVDFGLSRETANTF--DKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-----~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aP   73 (488)
                      +++..+..++.||+.||+|||+++++|+||||+||+++.++     .++|+|||++.......  .......++..|+||
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  182 (269)
T cd05044         103 LTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAP  182 (269)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCH
Confidence            35678889999999999999999999999999999999887     89999999987543221  112233456789999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      |.+.+     ..++.++|+|||||++|+|++ |..||...........+......  ..+...+..+.++|.+||..+|.
T Consensus       183 E~~~~-----~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~  255 (269)
T cd05044         183 ESLLD-----GKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRL--QKPENCPDKIYQLMTNCWAQDPS  255 (269)
T ss_pred             HHHcc-----CCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCcc--CCcccchHHHHHHHHHHcCCCcc
Confidence            99976     567889999999999999998 99999877665544444332222  23456789999999999999999


Q ss_pred             CCCCHHHHhc
Q psy9090         153 HRPYMSELLE  162 (488)
Q Consensus       153 ~Rps~~ell~  162 (488)
                      +||+++++++
T Consensus       256 ~Rp~~~~i~~  265 (269)
T cd05044         256 ERPTFDRIQE  265 (269)
T ss_pred             cCCCHHHHHH
Confidence            9999999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.92  E-value=5.9e-25  Score=212.73  Aligned_cols=155  Identities=30%  Similarity=0.549  Sum_probs=124.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..|+.||+.||.|||+++++|++|+|+||+++.++.+||+|||++......  ............|+|||.+..
T Consensus       100 ~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  179 (259)
T PF07714_consen  100 LSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKD  179 (259)
T ss_dssp             SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999999999999999999999999999999998765221  111223346678999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++||+++ |..||...........+.....+.  .+..++..+.++|..||..+|++|||+
T Consensus       180 -----~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~C~~~~p~~RPs~  252 (259)
T PF07714_consen  180 -----GEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLP--IPDNCPKDIYSLIQQCWSHDPEKRPSF  252 (259)
T ss_dssp             -----SEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETT--SBTTSBHHHHHHHHHHT-SSGGGS--H
T ss_pred             -----ccccccccccccccccccccccccccccccccccccccccccccce--eccchhHHHHHHHHHHcCCChhhCcCH
Confidence                 457899999999999999999 789998887777666665443322  355689999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       253 ~~i~~  257 (259)
T PF07714_consen  253 QEILQ  257 (259)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.92  E-value=1.4e-24  Score=236.63  Aligned_cols=154  Identities=22%  Similarity=0.315  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc------------------cCccccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT------------------FDKKKTF   64 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~------------------~~~~~~~   64 (488)
                      ...+..++.||+.||+|||++||+||||||+|||++.++.++|+|||+++.....                  .......
T Consensus       112 v~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~  191 (932)
T PRK13184        112 VGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKI  191 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCC
Confidence            4567889999999999999999999999999999999999999999998765110                  0111235


Q ss_pred             cCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHH
Q psy9090          65 LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIA  144 (488)
Q Consensus        65 ~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~  144 (488)
                      +||+.|+|||++.+     ..++.++||||+||++|+|++|..||................+........+++.+.+++.
T Consensus       192 vGT~~YmAPE~l~g-----~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~  266 (932)
T PRK13184        192 VGTPDYMAPERLLG-----VPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAM  266 (932)
T ss_pred             CCCCCCCCHHHhcC-----CCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHH
Confidence            79999999999876     5688999999999999999999999987554433332221111122223467899999999


Q ss_pred             HhcccCCCCCCCHHHHh
Q psy9090         145 ECLEKNPEHRPYMSELL  161 (488)
Q Consensus       145 ~~L~~dP~~Rps~~ell  161 (488)
                      +||..||++|++..+.+
T Consensus       267 rcL~~DP~kR~ss~eeL  283 (932)
T PRK13184        267 KALAVDPAERYSSVQEL  283 (932)
T ss_pred             HHccCChhhCcCHHHHH
Confidence            99999999998754433

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.92  E-value=2.9e-24  Score=203.67  Aligned_cols=160  Identities=39%  Similarity=0.712  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.+++.++.+||+.+++|+||+|.||+++.++.++|+|||.+...... .......++..|++||.+..  
T Consensus        84 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~-~~~~~~~~~~~~~~pE~~~~--  160 (244)
T smart00220       84 LSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPG-GLLTTFVGTPEYMAPEVLLG--  160 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeeccc-cccccccCCcCCCCHHHHcc--
Confidence            467889999999999999999999999999999999999999999999998766543 23345568889999999874  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCC-cCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASN-WSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+||+|++++++++|..||..........+.............. ++..+.+++.+||..+|++||++.+
T Consensus       161 ---~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  237 (244)
T smart00220      161 ---KGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEE  237 (244)
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHH
Confidence               567889999999999999999999998744344444444433332222222 7899999999999999999999999


Q ss_pred             HhcCcCC
Q psy9090         160 LLEHPFI  166 (488)
Q Consensus       160 ll~hp~f  166 (488)
                      +++||||
T Consensus       238 ~~~~~~~  244 (244)
T smart00220      238 ALQHPFF  244 (244)
T ss_pred             HhhCCCC
Confidence            9999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.92  E-value=2.9e-24  Score=208.70  Aligned_cols=156  Identities=24%  Similarity=0.409  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.++|+|||+++........ .....+++.|+|||.+.. 
T Consensus       104 ~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  182 (270)
T cd05056         104 LDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINF-  182 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhcc-
Confidence            467889999999999999999999999999999999999999999999998755332111 112234567999998865 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|++++ |..||...........+......  ..+...+..+.++|.+||..+|.+|||+.
T Consensus       183 ----~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~Rpt~~  256 (270)
T cd05056         183 ----RRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERL--PMPPNCPPTLYSLMTKCWAYDPSKRPRFT  256 (270)
T ss_pred             ----CCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence                567889999999999999885 99999887766655555444332  23456789999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++..
T Consensus       257 ~~~~~  261 (270)
T cd05056         257 ELKAQ  261 (270)
T ss_pred             HHHHH
Confidence            98763

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.91  E-value=3.2e-24  Score=208.06  Aligned_cols=155  Identities=25%  Similarity=0.448  Sum_probs=125.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccc---cccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK---TFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~---~~~gt~~y~aPE~l~   77 (488)
                      +++.++..++.|++.||+|||+.|++||||||+||+++.++.+||+|||++...........   ....++.|+|||++.
T Consensus       104 ~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  183 (268)
T cd05063         104 FSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIA  183 (268)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhh
Confidence            46788999999999999999999999999999999999999999999999875543211111   112345799999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|+||+||++|+|++ |..||...........+....  ..+.+...+..+.+++.+||..+|++||+
T Consensus       184 ~-----~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~li~~c~~~~p~~Rp~  256 (268)
T cd05063         184 Y-----RKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGF--RLPAPMDCPSAVYQLMLQCWQQDRARRPR  256 (268)
T ss_pred             c-----CCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHHHcCCCcccCcC
Confidence            5     567889999999999999987 999998777665555554332  22234457899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       257 ~~~i~~  262 (268)
T cd05063         257 FVDIVN  262 (268)
T ss_pred             HHHHHH
Confidence            999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.91  E-value=2.4e-24  Score=216.32  Aligned_cols=155  Identities=28%  Similarity=0.466  Sum_probs=125.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +...+..++.||+.||.|||++|++||||||+|||++.++.+||+|||+++.......  ......++..|+|||++.+ 
T Consensus       132 ~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  210 (334)
T cd05100         132 TFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFD-  210 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhcc-
Confidence            4567788999999999999999999999999999999999999999999875533211  1122234567999999876 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |..||.+.........+.....+.  .+...+..+.+++.+||..+|.+|||+.
T Consensus       211 ----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~~p~~Rps~~  284 (334)
T cd05100         211 ----RVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMD--KPANCTHELYMIMRECWHAVPSQRPTFK  284 (334)
T ss_pred             ----CCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHcccChhhCcCHH
Confidence                568889999999999999998 899998877655554444332222  3456788999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       285 ell~~  289 (334)
T cd05100         285 QLVED  289 (334)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0668|consensus

Probab=99.91  E-value=1.3e-24  Score=195.30  Aligned_cols=165  Identities=20%  Similarity=0.402  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |+.-+++.++.|++.||.|||++||+|||+||.|++|+... .++|+|+|++....+. ......+.+..|--||.+..-
T Consensus       129 l~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~-~eYnVRVASRyfKGPELLVdy  207 (338)
T KOG0668|consen  129 LTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG-KEYNVRVASRYFKGPELLVDY  207 (338)
T ss_pred             hchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCC-ceeeeeeehhhcCCchheeec
Confidence            45678999999999999999999999999999999999654 5999999999876554 344455677888999999763


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCC-CCChHHHHHHHHh----------------CCCC---------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFE-DMHPTRALFQIVR----------------NPPP---------------  127 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~-~~~~~~~~~~~~~----------------~~~~---------------  127 (488)
                          ..|+.+-|+|||||++..|+..+.||. +.+...++.++.+                ...|               
T Consensus       208 ----~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~  283 (338)
T KOG0668|consen  208 ----QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWS  283 (338)
T ss_pred             ----hhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHH
Confidence                668899999999999999999999984 4333444433321                0000               


Q ss_pred             CCCC---CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         128 GLYR---ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       128 ~~~~---~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      .+..   ..-.++++.+|+.++|..|..+|+|+++++.||||..+.
T Consensus       284 ~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~  329 (338)
T KOG0668|consen  284 RFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVR  329 (338)
T ss_pred             HhCCccccccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHH
Confidence            0000   112368999999999999999999999999999998654

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.91  E-value=2.5e-24  Score=221.08  Aligned_cols=156  Identities=28%  Similarity=0.508  Sum_probs=125.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+++.......  ......+++.|+|||++.+
T Consensus       234 l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  313 (400)
T cd05105         234 LTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFD  313 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcC
Confidence            46788899999999999999999999999999999999999999999999875432211  1223456788999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||............+..... ...+..++..+.+++.+||..+|++||++
T Consensus       314 -----~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~  387 (400)
T cd05105         314 -----NLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYR-MAKPDHATQEVYDIMVKCWNSEPEKRPSF  387 (400)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCC-CCCCccCCHHHHHHHHHHCccCHhHCcCH
Confidence                 568899999999999999996 99999876544444444333221 22345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++.+
T Consensus       388 ~~l~~  392 (400)
T cd05105         388 LHLSD  392 (400)
T ss_pred             HHHHH
Confidence            88865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG1027|consensus

Probab=99.91  E-value=3.8e-25  Score=230.00  Aligned_cols=158  Identities=28%  Similarity=0.453  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CC--cEEEEecCCcccccccc---CccccccCCCccccchhh
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DG--EVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~--~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l   76 (488)
                      ..+.++.|+++||++||+.+||||||||.||||..   ++  .++|+|||+++++....   ....+..||-+|+|||++
T Consensus       607 ~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L  686 (903)
T KOG1027|consen  607 DPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQL  686 (903)
T ss_pred             cHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHH
Confidence            34778999999999999999999999999999986   34  58999999999876442   234566899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..     ..-+.++||+|+||++|+.++| .+||.+...  .-.+|+.+...-....+.-..++.+||.+||.++|..||
T Consensus       687 ~~-----~~~~~avDiFslGCvfyYvltgG~HpFGd~~~--R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RP  759 (903)
T KOG1027|consen  687 RE-----DRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLE--RQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRP  759 (903)
T ss_pred             hc-----cccCcccchhhcCceEEEEecCCccCCCchHH--hhhhhhcCccceeeeccCchHHHHHHHHHhcCCCcccCC
Confidence            86     3335589999999999998885 999987542  333444433221111111122899999999999999999


Q ss_pred             CHHHHhcCcCCCCC
Q psy9090         156 YMSELLEHPFITSL  169 (488)
Q Consensus       156 s~~ell~hp~f~~~  169 (488)
                      ++.++|.||+|+..
T Consensus       760 sa~~VL~HPlFW~~  773 (903)
T KOG1027|consen  760 SATDVLNHPLFWDS  773 (903)
T ss_pred             CHHHHhCCCccCCh
Confidence            99999999999864

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.91  E-value=3.5e-24  Score=206.22  Aligned_cols=156  Identities=28%  Similarity=0.496  Sum_probs=125.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++++.++.++.|++.+|+|||++|++||||||+||+++.++.++|+|||++........ ......++..|+|||.+.+ 
T Consensus        97 ~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~-  175 (256)
T cd05112          97 FSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSF-  175 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhcc-
Confidence            46788999999999999999999999999999999999999999999999875432211 1112234568999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||+|+++|+|++ |..||...........+......  ..+...+..+.+|+.+||..+|++|||+.
T Consensus       176 ----~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~  249 (256)
T cd05112         176 ----SKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRL--YKPRLASQSVYELMQHCWKERPEDRPSFS  249 (256)
T ss_pred             ----CCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCC--CCCCCCCHHHHHHHHHHcccChhhCCCHH
Confidence                567889999999999999998 99999877665555554433222  22445689999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       250 ~~l~~  254 (256)
T cd05112         250 LLLHQ  254 (256)
T ss_pred             HHHHh
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.91  E-value=3.5e-24  Score=206.90  Aligned_cols=151  Identities=20%  Similarity=0.416  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc--------EEEEecCCccccccccCccccccCCCcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--------VKIVDFGLSRETANTFDKKKTFLGSPSWMA   72 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~--------vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~a   72 (488)
                      +++..+..++.||+.||+|||++||+||||||+||+++.++.        ++++|||++.....    .....+++.|+|
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~----~~~~~~~~~y~a  172 (258)
T cd05078          97 INISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP----KEILLERIPWVP  172 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCC----chhccccCCccC
Confidence            467888999999999999999999999999999999987664        69999998765432    234567889999


Q ss_pred             chhhcccccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          73 PEIMRCGHKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        73 PE~l~~~~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      ||++.+.    ..++.++|+||+|+++|+|++| .+||........ ....... .  ..+...+.++.++|.+||+.+|
T Consensus       173 PE~~~~~----~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~li~~~l~~~p  244 (258)
T cd05078         173 PECIENP----QNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK-LQFYEDR-H--QLPAPKWTELANLINQCMDYEP  244 (258)
T ss_pred             chhccCC----CCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH-HHHHHcc-c--cCCCCCcHHHHHHHHHHhccCh
Confidence            9998752    3478899999999999999998 466665544332 2222221 1  1233456889999999999999


Q ss_pred             CCCCCHHHHhcC
Q psy9090         152 EHRPYMSELLEH  163 (488)
Q Consensus       152 ~~Rps~~ell~h  163 (488)
                      ++|||++++++.
T Consensus       245 ~~Rps~~~il~~  256 (258)
T cd05078         245 DFRPSFRAIIRD  256 (258)
T ss_pred             hhCCCHHHHHHh
Confidence            999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.91  E-value=3.6e-24  Score=215.92  Aligned_cols=157  Identities=28%  Similarity=0.500  Sum_probs=123.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      ++...+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++........  ......+++.|+|||.+.+
T Consensus       176 ~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  255 (343)
T cd05103         176 LTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD  255 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcC
Confidence            35677889999999999999999999999999999999999999999999876432211  1122345678999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||||+++|+|++ |..||............+..... ...+...++.+.+++..||..+|++|||+
T Consensus       256 -----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~cl~~~p~~Rps~  329 (343)
T cd05103         256 -----RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR-MRAPDYTTPEMYQTMLDCWHGEPSQRPTF  329 (343)
T ss_pred             -----CCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCC-CCCCCCCCHHHHHHHHHHccCChhhCcCH
Confidence                 568899999999999999996 99999775543333333322211 12234567899999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .++++|
T Consensus       330 ~eil~~  335 (343)
T cd05103         330 SELVEH  335 (343)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.91  E-value=4.1e-24  Score=210.69  Aligned_cols=156  Identities=22%  Similarity=0.367  Sum_probs=121.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..+..++.|++.||+|||++|++||||||+||+++.++.+||+|||++.......  .......+++.|+|||.+.. 
T Consensus       127 ~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  205 (295)
T cd05097         127 SIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILL-  205 (295)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhcc-
Confidence            567788999999999999999999999999999999999999999999987543221  11122345678999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc--CCCCCCCCChHHHHHHHHh---C--CCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD--GKPPFEDMHPTRALFQIVR---N--PPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt--g~~Pf~~~~~~~~~~~~~~---~--~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                          ..++.++|+|||||++|+|++  |..||........+..+..   .  .......+...++.+.+|+.+||..+|+
T Consensus       206 ----~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  281 (295)
T cd05097         206 ----GKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIK  281 (295)
T ss_pred             ----CCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCch
Confidence                568899999999999999987  7788877665544433321   1  1111122445689999999999999999


Q ss_pred             CCCCHHHHhc
Q psy9090         153 HRPYMSELLE  162 (488)
Q Consensus       153 ~Rps~~ell~  162 (488)
                      +|||++++++
T Consensus       282 ~RPs~~~i~~  291 (295)
T cd05097         282 DRPTFNKIHH  291 (295)
T ss_pred             hCcCHHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.91  E-value=5.4e-24  Score=205.77  Aligned_cols=154  Identities=26%  Similarity=0.482  Sum_probs=124.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++..+..++.||+.||.|||++|++||||||+||+++.++.+||+|||.+....... .......++..|+|||++..  
T Consensus       100 ~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~--  177 (260)
T cd05073         100 PLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF--  177 (260)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhcc--
Confidence            567788999999999999999999999999999999999999999999987553221 11122345567999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|+|||||++|++++ |..||...........+......  ..+...+.++.+++.+||..+|++||++.+
T Consensus       178 ---~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  252 (260)
T cd05073         178 ---GSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRM--PRPENCPEELYNIMMRCWKNRPEERPTFEY  252 (260)
T ss_pred             ---CCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCC--CCcccCCHHHHHHHHHHcccCcccCcCHHH
Confidence               567889999999999999998 99999887765555544443222  234567899999999999999999999998


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      ++.
T Consensus       253 l~~  255 (260)
T cd05073         253 IQS  255 (260)
T ss_pred             HHH
Confidence            764

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.91  E-value=6.1e-24  Score=206.42  Aligned_cols=160  Identities=30%  Similarity=0.451  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..+..++.|++.||+|||++|++||||||+||+++.++.++|+|||++........  ......+++.|+|||++...
T Consensus        98 ~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  177 (269)
T cd05087          98 DPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEV  177 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccc
Confidence            3556788999999999999999999999999999999999999999999864332211  11234567889999998642


Q ss_pred             ccC--CCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCC---CCCcCHHHHHHHHHhcccCCCC
Q psy9090          80 HKE--VDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYR---ASNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        80 ~~~--~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~li~~~L~~dP~~  153 (488)
                      ...  ...++.++|+||+|+++|+|++ |..||......................   ....++.+.+++.+|+ .+|++
T Consensus       178 ~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~  256 (269)
T cd05087         178 HGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQ  256 (269)
T ss_pred             cccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCccc
Confidence            111  1246789999999999999996 999998776555444333322221111   2245788999999998 68999


Q ss_pred             CCCHHHHhc
Q psy9090         154 RPYMSELLE  162 (488)
Q Consensus       154 Rps~~ell~  162 (488)
                      |||+++|+.
T Consensus       257 Rpt~~~l~~  265 (269)
T cd05087         257 RPSAEEVHL  265 (269)
T ss_pred             CCCHHHHHH
Confidence            999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.91  E-value=4.7e-24  Score=207.02  Aligned_cols=155  Identities=24%  Similarity=0.436  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc---ccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK---KTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~---~~~~gt~~y~aPE~l~   77 (488)
                      +++.++..++.|++.||+|||++|++||||||+||+++.++.++|+|||++..........   ....++..|+|||.+.
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~  182 (267)
T cd05066         103 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIA  182 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhc
Confidence            4678899999999999999999999999999999999999999999999987654321111   1122356799999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|+||||+++|++++ |..||...........+.....  .+.+...++.+.+++.+||..+|.+||+
T Consensus       183 ~-----~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~  255 (267)
T cd05066         183 Y-----RKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYR--LPAPMDCPAALHQLMLDCWQKDRNERPK  255 (267)
T ss_pred             c-----CccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCc--CCCCCCCCHHHHHHHHHHcccCchhCCC
Confidence            5     568889999999999999886 9999988776555555544322  2234567899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       256 ~~~i~~  261 (267)
T cd05066         256 FEQIVS  261 (267)
T ss_pred             HHHHHH
Confidence            999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.91  E-value=6.1e-24  Score=207.56  Aligned_cols=155  Identities=27%  Similarity=0.409  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc--ccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK--KTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~--~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++|++||||||+||+++.++.+||+|||+++.........  ....++..|+|||.+..
T Consensus       106 ~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  185 (279)
T cd05057         106 IGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILH  185 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhc
Confidence            4688999999999999999999999999999999999999999999999987654321111  11223567999998865


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||+|+++|++++ |..||.+.........+....  ....+...+..+.+++.+||..+|..||++
T Consensus       186 -----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~  258 (279)
T cd05057         186 -----RIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGE--RLPQPPICTIDVYMVLVKCWMIDAESRPTF  258 (279)
T ss_pred             -----CCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCC--CCCCCCCCCHHHHHHHHHHcCCChhhCCCH
Confidence                 567889999999999999998 999998877655444444332  222345578899999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       259 ~~l~~  263 (279)
T cd05057         259 KELIN  263 (279)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.91  E-value=7e-24  Score=206.07  Aligned_cols=160  Identities=23%  Similarity=0.412  Sum_probs=122.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..++.++.||+.||+|||+++++||||||+|||++.++.++|+|||++......  ........+++.|+|||++...
T Consensus        97 ~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (268)
T cd05086          97 QLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEF  176 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccc
Confidence            34567889999999999999999999999999999999999999999987542211  1122345678899999998542


Q ss_pred             cc--CCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCC---CCCCcCHHHHHHHHHhcccCCCC
Q psy9090          80 HK--EVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLY---RASNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        80 ~~--~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~li~~~L~~dP~~  153 (488)
                      ..  ....++.++|||||||++|+|++ |..||...........+.........   .+..+++.+.+++..|| .+|.+
T Consensus       177 ~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~  255 (268)
T cd05086         177 HGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEK  255 (268)
T ss_pred             cCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCccc
Confidence            11  11346789999999999999986 67788777766655555544322211   23357889999999999 67999


Q ss_pred             CCCHHHHhc
Q psy9090         154 RPYMSELLE  162 (488)
Q Consensus       154 Rps~~ell~  162 (488)
                      ||+++++++
T Consensus       256 Rp~~~~i~~  264 (268)
T cd05086         256 RATAEEVHR  264 (268)
T ss_pred             CCCHHHHHH
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.91  E-value=4.1e-24  Score=207.48  Aligned_cols=156  Identities=28%  Similarity=0.523  Sum_probs=128.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.+|.|||+ .|++|+||+|+||+++.++.++|+|||++....... ......|+..|+|||.+.+ 
T Consensus       110 ~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~-  187 (269)
T cd08528         110 FTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES-KLTSVVGTILYSCPEIVKN-  187 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccceeeccccc-ccccccCcccCcChhhhcC-
Confidence            4678899999999999999996 789999999999999999999999999987654432 3345568899999999975 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.++|+||||+++|+|++|.+||...........+......+. ....+++.+.++|.+||..||++||++.+
T Consensus       188 ----~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~~p~~Rp~~~e  262 (269)
T cd08528         188 ----EPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPL-PEGMYSEDVTDVITSCLTPDAEARPDIIQ  262 (269)
T ss_pred             ----CCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcC-CcccCCHHHHHHHHHHCCCCCccCCCHHH
Confidence                5578899999999999999999999987765554444444332221 12356899999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      +..+
T Consensus       263 ~~~~  266 (269)
T cd08528         263 VSAM  266 (269)
T ss_pred             HHHH
Confidence            8754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.91  E-value=4.7e-24  Score=205.50  Aligned_cols=151  Identities=20%  Similarity=0.419  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-------cEEEEecCCccccccccCccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-------EVKIVDFGLSRETANTFDKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-------~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP   73 (488)
                      +++..+..++.||+.||+|||++||+||||||+||+++.++       .+||+|||++.....    .....++..|+||
T Consensus        98 ~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~~~~y~aP  173 (259)
T cd05037          98 VSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS----REERVERIPWIAP  173 (259)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccccc----ccccccCCCccCh
Confidence            46788999999999999999999999999999999999888       799999999876433    2234567789999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      |++....   ..++.++|+||+|+++|+|++ |..||................  .  .+...+..+.++|.+||..+|.
T Consensus       174 E~~~~~~---~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~li~~~l~~~p~  246 (259)
T cd05037         174 ECIRNGQ---ASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQH--R--LPMPDCAELANLINQCWTYDPT  246 (259)
T ss_pred             hhhcCCC---CCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCC--C--CCCCCchHHHHHHHHHhccChh
Confidence            9987521   367889999999999999999 688887664332222221111  1  1222348899999999999999


Q ss_pred             CCCCHHHHhc
Q psy9090         153 HRPYMSELLE  162 (488)
Q Consensus       153 ~Rps~~ell~  162 (488)
                      +|||+.++++
T Consensus       247 ~Rpt~~~il~  256 (259)
T cd05037         247 KRPSFRAILR  256 (259)
T ss_pred             hCCCHHHHHH
Confidence            9999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0664|consensus

Probab=99.91  E-value=1.1e-24  Score=200.26  Aligned_cols=165  Identities=25%  Similarity=0.466  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-cccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-KKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-~~~~~gt~~y~aPE~l~~~   79 (488)
                      |+...++.+++||+.||+|||+.||.||||||.|.|+++|..+||||||+++........ ...-+-|-+|+|||++.+.
T Consensus       153 Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGa  232 (449)
T KOG0664|consen  153 LTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGA  232 (449)
T ss_pred             CCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcc
Confidence            466788999999999999999999999999999999999999999999999876543222 2333567899999999984


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh-----------------------CC--CCCCCC---
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-----------------------NP--PPGLYR---  131 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~-----------------------~~--~~~~~~---  131 (488)
                          ..|+..+||||+|||+.|++..+..|....+.+.+.-+..                       ..  .|....   
T Consensus       233 ----RhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYt  308 (449)
T KOG0664|consen  233 ----RRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYK  308 (449)
T ss_pred             ----hhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceee
Confidence                6799999999999999999999999988777666554431                       11  111111   


Q ss_pred             ---CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         132 ---ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       132 ---~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                         +.....+...++.++|..+|.+|.+..+++.|++....
T Consensus       309 lsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~  349 (449)
T KOG0664|consen  309 IASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEG  349 (449)
T ss_pred             ecCCcccchHHHHHHHHHhCCCCcccccHhhhccccccccc
Confidence               11223567889999999999999999999999998653

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.91  E-value=5.5e-24  Score=208.55  Aligned_cols=157  Identities=25%  Similarity=0.396  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.++..++.||+.||+|||++|++||||||+||+++.++.++|+|||+++.......   ......++..|+|||++.
T Consensus       106 ~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~  185 (284)
T cd05079         106 INLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLI  185 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhc
Confidence            46788999999999999999999999999999999999999999999999876543211   122345677899999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--------------HHHHHHHHhCCCCCCCCCCCcCHHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--------------TRALFQIVRNPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~~~li  143 (488)
                      +     ..++.++|+|||||++|+|+++..|+.....              ........... .....+..++..+.+|+
T Consensus       186 ~-----~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li  259 (284)
T cd05079         186 Q-----SKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEG-KRLPRPPNCPEEVYQLM  259 (284)
T ss_pred             c-----CCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcC-ccCCCCCCCCHHHHHHH
Confidence            5     5678899999999999999998776532110              01111111111 11123456789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy9090         144 AECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~h  163 (488)
                      .+||..+|++|||+++++++
T Consensus       260 ~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         260 RKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             HHHccCCcccCcCHHHHHHH
Confidence            99999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.91  E-value=5.5e-24  Score=231.95  Aligned_cols=107  Identities=28%  Similarity=0.482  Sum_probs=87.8

Q ss_pred             cCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHH
Q psy9090          65 LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIA  144 (488)
Q Consensus        65 ~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~  144 (488)
                      +||+.|+|||++.+     ..|+.++||||+||++|+|++|++||.+.........++....+.......++..+.+++.
T Consensus       541 vGT~~Y~APE~l~~-----~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~~~~~il~~~~~~p~~~~~~~~~~~~~l~  615 (669)
T cd05610         541 LGTPDYLAPELLLG-----KPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPWPEGEEKLSVNAQNAIE  615 (669)
T ss_pred             eeCccccCHHHcCC-----CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHH
Confidence            46889999999976     5688999999999999999999999998887777766665432221122356888999999


Q ss_pred             HhcccCCCCCCCHHHHhcCcCCCCCCCCcccc
Q psy9090         145 ECLEKNPEHRPYMSELLEHPFITSLPENDLHL  176 (488)
Q Consensus       145 ~~L~~dP~~Rps~~ell~hp~f~~~~~~~~~~  176 (488)
                      +||..+|.+||++.++++||||..++|.....
T Consensus       616 ~lL~~dP~~R~ta~e~l~h~~~~~~~~~~~~~  647 (669)
T cd05610         616 ILLTMDPTKRAGLKELKQHPLFHGVDWENLQN  647 (669)
T ss_pred             HHcccChhHCcCHHHHHhCHhhcCCCHHHhcc
Confidence            99999999999999999999999887654443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.91  E-value=9.1e-24  Score=205.71  Aligned_cols=157  Identities=27%  Similarity=0.478  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-cCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++||+||||||+||+++.++.++++|||++...... ........+++.|+|||.+.+ 
T Consensus       114 l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-  192 (275)
T cd05046         114 LSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQE-  192 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhcc-
Confidence            468889999999999999999999999999999999999999999999998643221 112233456778999999875 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |..||...........+.... .....+..++..+.+++.+||..+|.+|||+.
T Consensus       193 ----~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~  267 (275)
T cd05046         193 ----DDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGK-LELPVPEGCPSRLYKLMTRCWAVNPKDRPSFS  267 (275)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCC-cCCCCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence                456789999999999999998 889997766555444443222 22223456789999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++..
T Consensus       268 ~~l~~  272 (275)
T cd05046         268 ELVSA  272 (275)
T ss_pred             HHHHH
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.91  E-value=1.1e-23  Score=204.64  Aligned_cols=155  Identities=25%  Similarity=0.458  Sum_probs=123.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---ccccc--CCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFL--GSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~--gt~~y~aPE~   75 (488)
                      +++.+++.++.|++.||+|||++|++|+||||+||+++.++.++|+|||++.........   .....  .+..|+|||.
T Consensus       103 ~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  182 (269)
T cd05065         103 FTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEA  182 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhH
Confidence            467889999999999999999999999999999999999999999999988654322111   11111  1347999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +.+     ..++.++|+||+||++|++++ |..||...........+....  ..+.+..++..+.+++.+||..+|.+|
T Consensus       183 ~~~-----~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R  255 (269)
T cd05065         183 IAY-----RKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDY--RLPPPMDCPTALHQLMLDCWQKDRNAR  255 (269)
T ss_pred             hcc-----CcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCC--cCCCcccCCHHHHHHHHHHcCCChhhC
Confidence            875     567889999999999999886 999998877665555543322  222345678899999999999999999


Q ss_pred             CCHHHHhc
Q psy9090         155 PYMSELLE  162 (488)
Q Consensus       155 ps~~ell~  162 (488)
                      |++.+++.
T Consensus       256 p~~~~i~~  263 (269)
T cd05065         256 PKFGQIVS  263 (269)
T ss_pred             cCHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.90  E-value=1.4e-23  Score=215.49  Aligned_cols=157  Identities=27%  Similarity=0.484  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++..+..++.||+.||.|||+++++||||||+|||++.++.+||+|||+++.......  ......+++.|+|||.+.+
T Consensus       236 l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  315 (401)
T cd05107         236 LSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFN  315 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcC
Confidence            46678899999999999999999999999999999999999999999999875432211  1223456788999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|+||+||++|+|++ |..||............+..... ...+..++..+.+++.+||..+|.+||++
T Consensus       316 -----~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~li~~cl~~~P~~RPs~  389 (401)
T cd05107         316 -----NLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYR-MAKPAHASDEIYEIMQKCWEEKFEIRPDF  389 (401)
T ss_pred             -----CCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcCCChhHCcCH
Confidence                 567889999999999999998 89999776555544444433221 12345678999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      +++++.
T Consensus       390 ~ell~~  395 (401)
T cd05107         390 SQLVHL  395 (401)
T ss_pred             HHHHHH
Confidence            999863

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.90  E-value=1.4e-23  Score=204.75  Aligned_cols=151  Identities=21%  Similarity=0.460  Sum_probs=118.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-------cEEEEecCCccccccccCccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-------EVKIVDFGLSRETANTFDKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-------~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP   73 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++..+       .+|++|||++.....    .....+++.|+||
T Consensus       114 ~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~----~~~~~~~~~~~aP  189 (274)
T cd05076         114 VPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALS----REERVERIPWIAP  189 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccccc----ccccccCCcccCc
Confidence            46788999999999999999999999999999999997644       389999998754322    1233577889999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHH-hcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~el-ltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      |.+.+.    ..++.++|+|||||++|++ ++|..||....+.... ....... .  .+...++.+.++|.+||..+|+
T Consensus       190 e~~~~~----~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~li~~cl~~~p~  261 (274)
T cd05076         190 ECVPGG----NSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKE-RFYEKKH-R--LPEPSCKELATLISQCLTYEPT  261 (274)
T ss_pred             hhhcCC----CCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHH-HHHHhcc-C--CCCCCChHHHHHHHHHcccChh
Confidence            988642    4578899999999999998 5799999876544332 2222111 1  2234567899999999999999


Q ss_pred             CCCCHHHHhcC
Q psy9090         153 HRPYMSELLEH  163 (488)
Q Consensus       153 ~Rps~~ell~h  163 (488)
                      +|||+.+++++
T Consensus       262 ~Rps~~~il~~  272 (274)
T cd05076         262 QRPSFRTILRD  272 (274)
T ss_pred             hCcCHHHHHHh
Confidence            99999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.90  E-value=1.3e-23  Score=205.76  Aligned_cols=156  Identities=24%  Similarity=0.411  Sum_probs=119.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---cccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||++|++||||||+||+++.++.+||+|||++.........   .....++..|+|||++.
T Consensus       105 l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  184 (284)
T cd05081         105 LDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLT  184 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhc
Confidence            467888999999999999999999999999999999999999999999998765332111   11122345699999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH---------------HHHHHHhCCCCCCCCCCCcCHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR---------------ALFQIVRNPPPGLYRASNWSQHYVDF  142 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~---------------~~~~~~~~~~~~~~~~~~~s~~~~~l  142 (488)
                      +     ..++.++|+|||||++|+|++|..|+.......               .+...+... ...+.+..++..+.+|
T Consensus       185 ~-----~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  258 (284)
T cd05081         185 E-----SKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNN-GRLPAPPGCPAEIYAI  258 (284)
T ss_pred             c-----CCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcC-CcCCCCCCCCHHHHHH
Confidence            5     567889999999999999999887764332110               011111111 1122345678999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy9090         143 IAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       143 i~~~L~~dP~~Rps~~ell~  162 (488)
                      +.+||..+|++|||+.+++.
T Consensus       259 i~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         259 MKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             HHHHccCChhhCCCHHHHHH
Confidence            99999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0670|consensus

Probab=99.90  E-value=1.4e-24  Score=214.76  Aligned_cols=160  Identities=26%  Similarity=0.424  Sum_probs=124.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      .-..++.|+.|++.||..|..+||+|.||||+|||++... .+||||||.|......  ......-+..|.|||++.+  
T Consensus       534 ~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~en--eitPYLVSRFYRaPEIiLG--  609 (752)
T KOG0670|consen  534 HIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASEN--EITPYLVSRFYRAPEIILG--  609 (752)
T ss_pred             eehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccccccc--cccHHHHHHhccCcceeec--
Confidence            3457889999999999999999999999999999998654 5899999998765442  1222334568999999998  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHH--HhCCCCCC-----------------------------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI--VRNPPPGL-----------------------------  129 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~--~~~~~~~~-----------------------------  129 (488)
                         .+|+...|+||+||+||||.||+..|++.+....+.-.  ++++.|..                             
T Consensus       610 ---~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r  686 (752)
T KOG0670|consen  610 ---LPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTER  686 (752)
T ss_pred             ---CcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccc
Confidence               78999999999999999999999999988765443221  11111100                             


Q ss_pred             --------CCC-----------CCc-------CHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         130 --------YRA-----------SNW-------SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       130 --------~~~-----------~~~-------s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                              ..|           ..+       -..+++|+.+||..||++|.|+.++|.||||..
T Consensus       687 ~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  687 EKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             eeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence                    000           011       145789999999999999999999999999974

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.90  E-value=5.5e-23  Score=214.24  Aligned_cols=167  Identities=19%  Similarity=0.324  Sum_probs=120.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++..++.++.|++.+|.|||+++|+||||||+|||++.++.+||+|||++........ ......+|+.|+|||.+....
T Consensus       307 ~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~  386 (507)
T PLN03224        307 DINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQ  386 (507)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCC
Confidence            4567889999999999999999999999999999999999999999999865433211 111223478999999986421


Q ss_pred             cCCC---------------CC--CCccchhhhHHHHHHHhcCCC-CCCCCChHHHH----------HHHHhCCCCCCCCC
Q psy9090          81 KEVD---------------GY--DNRIDVWALGITAIELGDGKP-PFEDMHPTRAL----------FQIVRNPPPGLYRA  132 (488)
Q Consensus        81 ~~~~---------------~~--~~~~DiwslGvil~elltg~~-Pf~~~~~~~~~----------~~~~~~~~~~~~~~  132 (488)
                      ....               .|  ..+.|+||+||++|+|++|.. ||.........          .+............
T Consensus       387 ~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~  466 (507)
T PLN03224        387 SCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLL  466 (507)
T ss_pred             CCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccc
Confidence            1100               12  235799999999999999876 76532211110          11111122223233


Q ss_pred             CCcCHHHHHHHHHhcccCC---CCCCCHHHHhcCcCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNP---EHRPYMSELLEHPFITS  168 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP---~~Rps~~ell~hp~f~~  168 (488)
                      ...++..++|+.+||..+|   .+|+|++++|+||||..
T Consensus       467 d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        467 DRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             cccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence            4568999999999999866   68999999999999953

>KOG1026|consensus

Probab=99.89  E-value=1.9e-23  Score=219.20  Aligned_cols=154  Identities=29%  Similarity=0.526  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+..+...|+.||+.|+.||-++.+|||||-..|+||.++-.|||+|||+++..-..  ........-...|||||.+..
T Consensus       600 L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly  679 (774)
T KOG1026|consen  600 LSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILY  679 (774)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhc
Confidence            567889999999999999999999999999999999999999999999999865332  011111123468999999987


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++||||+||+|||+++ |..||.+....+.+..+..+..  +..|.++|.++.+||..||..+|++||++
T Consensus       680 -----~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~l--L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF  752 (774)
T KOG1026|consen  680 -----GKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQL--LSCPENCPTEVYSLMLECWNENPKRRPSF  752 (774)
T ss_pred             -----CcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCc--ccCCCCCCHHHHHHHHHHhhcCcccCCCH
Confidence                 789999999999999999987 9999999998888888776654  56788999999999999999999999999


Q ss_pred             HHHh
Q psy9090         158 SELL  161 (488)
Q Consensus       158 ~ell  161 (488)
                      ++|-
T Consensus       753 ~eI~  756 (774)
T KOG1026|consen  753 KEIH  756 (774)
T ss_pred             HHHH
Confidence            9974

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.89  E-value=3.5e-23  Score=202.19  Aligned_cols=156  Identities=28%  Similarity=0.488  Sum_probs=121.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---cccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.||+.||+|||++|++|+||||+||+++.++.++|+|||++.........   .....++..|+|||.+.
T Consensus       106 ~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~  185 (284)
T cd05038         106 INLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLR  185 (284)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHc
Confidence            467788999999999999999999999999999999999999999999998765422111   11223456799999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH--------------HHHHHHHhCCCCCCCCCCCcCHHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--------------RALFQIVRNPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~~~~li  143 (488)
                      +     ..++.++|+||||+++|+|++|..|+......              ..+...+... .....+..++.++.+++
T Consensus       186 ~-----~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li  259 (284)
T cd05038         186 T-----SKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEG-ERLPRPPSCPDEVYDLM  259 (284)
T ss_pred             c-----CCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcC-CcCCCCccCCHHHHHHH
Confidence            5     46788999999999999999999998653221              1112222221 12223445678999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      .+||..+|.+|||+.++++
T Consensus       260 ~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         260 KLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             HHHhccChhhCCCHHHHHH
Confidence            9999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG0984|consensus

Probab=99.89  E-value=2.7e-23  Score=184.15  Aligned_cols=129  Identities=37%  Similarity=0.618  Sum_probs=107.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++|..+-.|+..++.||.|||++ .++|||+||+|||++..|+||+||||.+-.+.+.... +.-.|.-.|+|||.+...
T Consensus       145 ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAk-t~daGCkpYmaPEri~~e  223 (282)
T KOG0984|consen  145 IPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAK-TMDAGCKPYMAPERINPE  223 (282)
T ss_pred             CchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhhhHH-HHhcCCCccCChhhcCcc
Confidence            47888899999999999999975 7999999999999999999999999998776543221 223567789999998764


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCC-CChHHHHHHHHhCCCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFED-MHPTRALFQIVRNPPPGLYR  131 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~-~~~~~~~~~~~~~~~~~~~~  131 (488)
                      .. ...|+.++||||||+.+.||.+++.||.. .++.+++.+++..+.|.++.
T Consensus       224 ~n-~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVeep~P~Lp~  275 (282)
T KOG0984|consen  224 LN-QKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEEPSPQLPA  275 (282)
T ss_pred             cC-cccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhcCCCCCCcc
Confidence            33 34799999999999999999999999964 46678888888887776643

>KOG1151|consensus

Probab=99.89  E-value=3.7e-23  Score=201.21  Aligned_cols=167  Identities=28%  Similarity=0.482  Sum_probs=133.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEc---cCCcEEEEecCCccccccc-------cCccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT-------FDKKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~---~~~~vkL~Dfg~a~~~~~~-------~~~~~~~~gt~   68 (488)
                      |+|++++.|+.||+.||.||....  |||-||||.|||+.   ..|.|||+|||+++.....       ....+...||-
T Consensus       565 mSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTY  644 (775)
T KOG1151|consen  565 MSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTY  644 (775)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCcee
Confidence            689999999999999999999875  99999999999995   4578999999999876533       23456678999


Q ss_pred             ccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHH---HHhCCCCCCCCCCCcCHHHHHHHHH
Q psy9090          69 SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ---IVRNPPPGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~li~~  145 (488)
                      +|+|||++.-+.. ....+.++||||+|||+|.++.|+.||........+.+   |+....-.++..+..++++++||++
T Consensus       645 WYLPPEcFvVgke-PPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAkaFIRR  723 (775)
T KOG1151|consen  645 WYLPPECFVVGKE-PPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKAFIRR  723 (775)
T ss_pred             eecCcceeecCCC-CCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHHHHHH
Confidence            9999999875422 25678899999999999999999999976543222221   2222222333445679999999999


Q ss_pred             hcccCCCCCCCHHHHhcCcCCCC
Q psy9090         146 CLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                      ||.+.-+.|..+.++..||||..
T Consensus       724 CLaYRKeDR~DV~qLA~dpyllP  746 (775)
T KOG1151|consen  724 CLAYRKEDRIDVQQLACDPYLLP  746 (775)
T ss_pred             HHHhhhhhhhhHHHHccCccccc
Confidence            99999999999999999999963

>KOG1095|consensus

Probab=99.88  E-value=1.7e-22  Score=219.30  Aligned_cols=155  Identities=26%  Similarity=0.524  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccc-cccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKK-TFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~-~~~gt~~y~aPE~l~~   78 (488)
                      |+..+...++.||+.|++||+++++|||||..+|+|++....|||+|||+|+.+....- ... ...-...|||||.+..
T Consensus       799 L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d  878 (1025)
T KOG1095|consen  799 LSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKD  878 (1025)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhh
Confidence            56788999999999999999999999999999999999999999999999985432111 111 1122358999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++||++| |..||.+....+.+...+.+.  .+..|..++..+.++|..||+.+|++||++
T Consensus       879 -----~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg--RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F  951 (1025)
T KOG1095|consen  879 -----GIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG--RLDPPSYCPEKLYQLMLQCWKHDPEDRPSF  951 (1025)
T ss_pred             -----cccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC--ccCCCCCCChHHHHHHHHHccCChhhCccH
Confidence                 679999999999999999998 999999999888887777766  455678889999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      ..|++
T Consensus       952 ~~i~~  956 (1025)
T KOG1095|consen  952 RTIVE  956 (1025)
T ss_pred             HHHHh
Confidence            99987

>KOG0194|consensus

Probab=99.86  E-value=4.4e-22  Score=202.41  Aligned_cols=156  Identities=29%  Similarity=0.475  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++..+...++.+.+.||+|||+++++||||-.+|+|++.++.+||+|||+++.............-...|+|||.+..  
T Consensus       259 v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~--  336 (474)
T KOG0194|consen  259 LPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNT--  336 (474)
T ss_pred             CCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhcc--
Confidence            456788899999999999999999999999999999999999999999998765422111111123468999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..|++++||||+||++||+.+ |..||.+........++.....+.. .+...+..+..++.+|+..+|+.|||+.+
T Consensus       337 ---~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~-~~~~~p~~~~~~~~~c~~~~p~~R~tm~~  412 (474)
T KOG0194|consen  337 ---GIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMP-IPSKTPKELAKVMKQCWKKDPEDRPTMST  412 (474)
T ss_pred             ---CccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCC-CCCCCHHHHHHHHHHhccCChhhccCHHH
Confidence               679999999999999999988 8999999998888888855433222 34466888999999999999999999998


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +.+
T Consensus       413 i~~  415 (474)
T KOG0194|consen  413 IKK  415 (474)
T ss_pred             HHH
Confidence            865

>KOG4257|consensus

Probab=99.86  E-value=5e-22  Score=200.39  Aligned_cols=154  Identities=24%  Similarity=0.432  Sum_probs=127.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc-ccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK-KTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~-~~~~gt~~y~aPE~l~~~~   80 (488)
                      +-.....++.||..||.|||++++|||||...|||+.+...|||+|||+++......-.. +...-..-|||||.+.-  
T Consensus       489 ~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINf--  566 (974)
T KOG4257|consen  489 PLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINF--  566 (974)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccch--
Confidence            445667899999999999999999999999999999999999999999999876542211 11122357999999865  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||.|||++||++. |..||.+....+.+-.+-.+...  +.|+++++.+..|+.+||.++|.+||.+.+
T Consensus       567 ---RrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRl--P~P~nCPp~LYslmskcWayeP~kRPrfte  641 (974)
T KOG4257|consen  567 ---RRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERL--PCPPNCPPALYSLMSKCWAYEPSKRPRFTE  641 (974)
T ss_pred             ---hcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCC--CCCCCCChHHHHHHHHHhccCcccCCcHHH
Confidence               678999999999999999865 99999988877776666655544  457889999999999999999999999887


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +..
T Consensus       642 i~~  644 (974)
T KOG4257|consen  642 IKA  644 (974)
T ss_pred             HHH
Confidence            643

>KOG0576|consensus

Probab=99.85  E-value=9e-22  Score=200.28  Aligned_cols=167  Identities=45%  Similarity=0.922  Sum_probs=146.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.++.+++++.+.||+|||+.|-+|||||-.|||++..|.+|++|||.+..+.....+...++|||.|||||+-.-+ 
T Consensus       109 lselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaave-  187 (829)
T KOG0576|consen  109 LSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVE-  187 (829)
T ss_pred             chhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHH-
Confidence            6799999999999999999999999999999999999999999999999998887776778899999999999986432 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                       ....|...||+|++|+...|+-.-++|..+..+...++-..+.  .+|.+..+..|++.+.+|++.+|..+|++||+++
T Consensus       188 -rkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptae  266 (829)
T KOG0576|consen  188 -RKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAE  266 (829)
T ss_pred             -hcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChh
Confidence             2367999999999999999999999998888877766655543  2344555678999999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      .+|.|||+...
T Consensus       267 klL~h~fvs~~  277 (829)
T KOG0576|consen  267 KLLQHPFVSQT  277 (829)
T ss_pred             hheeceeeccc
Confidence            99999998753

>KOG1187|consensus

Probab=99.85  E-value=3.5e-21  Score=193.85  Aligned_cols=156  Identities=25%  Similarity=0.480  Sum_probs=116.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC---CeecccCCCCEEEccCCcEEEEecCCccccccccCccccc-cCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH---VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF-LGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~-~gt~~y~aPE~l   76 (488)
                      |++.....|+.+++.||+|||...   ||||||||+|||+|++...||+|||+++..........+. .||..|+|||++
T Consensus       171 L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~  250 (361)
T KOG1187|consen  171 LDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYA  250 (361)
T ss_pred             CCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhh
Confidence            578889999999999999999854   9999999999999999999999999996543211222222 799999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC---hHHHHH---HHHhC------CCCCCCCCCCcC-----HHH
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---PTRALF---QIVRN------PPPGLYRASNWS-----QHY  139 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~---~~~~~~---~~~~~------~~~~~~~~~~~s-----~~~  139 (488)
                      ..     ...+.++||||+|+++.|++||+.|.....   ......   ..+..      ..+.+.. ..++     ..+
T Consensus       251 ~~-----g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~-~~~~~~~~~~~~  324 (361)
T KOG1187|consen  251 ST-----GKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKE-GEYPDEKEVKKL  324 (361)
T ss_pred             cc-----CCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccC-CCCChHHHHHHH
Confidence            76     568899999999999999999998886432   111111   11111      1111110 2223     224


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q psy9090         140 VDFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       140 ~~li~~~L~~dP~~Rps~~ell~  162 (488)
                      ..+..+|+..+|..||++.+++.
T Consensus       325 ~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  325 AELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             HHHHHHHcCcCCCcCcCHHHHHH
Confidence            57888999999999999999754

>KOG4250|consensus

Probab=99.84  E-value=3.7e-21  Score=197.77  Aligned_cols=150  Identities=27%  Similarity=0.584  Sum_probs=116.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc--cCCc--EEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGE--VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~--~~~~--vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      |+|.++..++..+..||.|||++|||||||||.||++.  .+|+  -||+|||.|+..... ....+.+||+.|.+||++
T Consensus       117 LpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~-s~~~S~vGT~~YLhPel~  195 (732)
T KOG4250|consen  117 LPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDN-SLFTSLVGTEEYLHPELY  195 (732)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCC-CeeeeecCchhhcChHHH
Confidence            78999999999999999999999999999999999985  3343  699999999998776 577788999999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh----HHHHHHHHhCCCC------------------CCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP----TRALFQIVRNPPP------------------GLYRASN  134 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~----~~~~~~~~~~~~~------------------~~~~~~~  134 (488)
                      ..    ...|+..+|.||+||++|++.||..||.-...    .+....+....+.                  .++.+..
T Consensus       196 E~----q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eNgpv~~s~~lP~p~~  271 (732)
T KOG4250|consen  196 ER----QKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEENGPVEWSSTLPQPNH  271 (732)
T ss_pred             hh----ccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEeeecccCCceeeeccCCCccc
Confidence            63    26789999999999999999999999943322    2234444332211                  1112222


Q ss_pred             cCH----HHHHHHHHhcccCCCCCC
Q psy9090         135 WSQ----HYVDFIAECLEKNPEHRP  155 (488)
Q Consensus       135 ~s~----~~~~li~~~L~~dP~~Rp  155 (488)
                      .++    .+-.++..+|..+|.+|.
T Consensus       272 Ls~~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  272 LSRGLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             ccHHHHhhhhHHHHHHHhhhHHHhC
Confidence            332    345788889999999998

>KOG0199|consensus

Probab=99.84  E-value=1.1e-20  Score=193.00  Aligned_cols=155  Identities=28%  Similarity=0.437  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccc---cccCCCccccchhhccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK---TFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~---~~~gt~~y~aPE~l~~~   79 (488)
                      -...+.|+.||+.|+.||..+++|||||...|+|+-....|||+|||+.+.+........   ...-...|+|||.++. 
T Consensus       211 v~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh-  289 (1039)
T KOG0199|consen  211 VSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRH-  289 (1039)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhcc-
Confidence            356789999999999999999999999999999999999999999999987765422221   1112347999999986 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+|++||++|||++ |..||.+.....++.++-.  ...+..+..+++.+.++++.||..+|++|||+.
T Consensus       290 ----~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~--~erLpRPk~csedIY~imk~cWah~paDRptFs  363 (1039)
T KOG0199|consen  290 ----RKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDA--GERLPRPKYCSEDIYQIMKNCWAHNPADRPTFS  363 (1039)
T ss_pred             ----ccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccc--cccCCCCCCChHHHHHHHHHhccCCccccccHH
Confidence                679999999999999999987 8999999998777766653  345566788999999999999999999999999


Q ss_pred             HHhcCc
Q psy9090         159 ELLEHP  164 (488)
Q Consensus       159 ell~hp  164 (488)
                      .|.+.-
T Consensus       364 air~~~  369 (1039)
T KOG0199|consen  364 AIREDL  369 (1039)
T ss_pred             HHHHhH
Confidence            886543

>KOG0200|consensus

Probab=99.83  E-value=2.4e-20  Score=200.75  Aligned_cols=155  Identities=30%  Similarity=0.514  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc-ccccC--CCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK-KTFLG--SPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~-~~~~g--t~~y~aPE~l~   77 (488)
                      |+..+...+..||+.|++||++..+|||||-..|||+..+..+|++|||+++......... ....+  ...|||||.+.
T Consensus       415 L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~  494 (609)
T KOG0200|consen  415 LTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLF  494 (609)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhc
Confidence            4678899999999999999999999999999999999999999999999998543321111 11122  23599999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCC-hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMH-PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .     ..|+.++||||+|++|||+.+ |..||.+.. .......+..+...  ..|...++++.++|+.||..+|++||
T Consensus       495 ~-----~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~--~~P~~c~~eiY~iM~~CW~~~p~~RP  567 (609)
T KOG0200|consen  495 D-----RVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRM--EQPEHCSDEIYDLMKSCWNADPEDRP  567 (609)
T ss_pred             c-----CcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHhCCCcccCC
Confidence            6     679999999999999999987 999998865 33443333333322  34666799999999999999999999


Q ss_pred             CHHHHhc
Q psy9090         156 YMSELLE  162 (488)
Q Consensus       156 s~~ell~  162 (488)
                      ++.++.+
T Consensus       568 ~F~~~~~  574 (609)
T KOG0200|consen  568 TFSECVE  574 (609)
T ss_pred             CHHHHHH
Confidence            9998875

>KOG1167|consensus

Probab=99.83  E-value=9.9e-21  Score=184.32  Aligned_cols=166  Identities=27%  Similarity=0.533  Sum_probs=120.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccc---------c------cc------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETA---------N------TF------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~---------~------~~------   58 (488)
                      ++-.+++.+++.++.||.++|++|||||||||.|+|.+. .+.-.|+|||++....         .      ..      
T Consensus       129 l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~  208 (418)
T KOG1167|consen  129 LSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDV  208 (418)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcc
Confidence            356789999999999999999999999999999999974 4567899999986110         0      00      


Q ss_pred             -----------------------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-
Q psy9090          59 -----------------------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-  114 (488)
Q Consensus        59 -----------------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-  114 (488)
                                             ...-...||++|+|||++...    ..-++++||||.|+|+..+++++.||..... 
T Consensus       209 ~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~----~~QttaiDiws~GVI~Lslls~~~PFf~a~dd  284 (418)
T KOG1167|consen  209 HCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRC----PRQTTAIDIWSAGVILLSLLSRRYPFFKAKDD  284 (418)
T ss_pred             cccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhc----cCcCCccceeeccceeehhhccccccccCccc
Confidence                                   000123699999999998753    4567899999999999999999999953221 


Q ss_pred             HHHHHHHHh--------------CC------C-----------------CCCC-------C----CCCcCHHHHHHHHHh
Q psy9090         115 TRALFQIVR--------------NP------P-----------------PGLY-------R----ASNWSQHYVDFIAEC  146 (488)
Q Consensus       115 ~~~~~~~~~--------------~~------~-----------------~~~~-------~----~~~~s~~~~~li~~~  146 (488)
                      ...+.++..              +.      .                 ....       .    ...++..+.+|+.+|
T Consensus       285 ~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~  364 (418)
T KOG1167|consen  285 ADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKC  364 (418)
T ss_pred             cchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHH
Confidence            111111110              00      0                 0000       0    011245789999999


Q ss_pred             cccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         147 LEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       147 L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      |..||.+|.|++++|.||||....
T Consensus       365 le~np~kRitAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  365 LELNPQKRITAEDALKHPFFDEAD  388 (418)
T ss_pred             ccCChhhcccHHHHhcCcCCcchh
Confidence            999999999999999999998543

>KOG0590|consensus

Probab=99.83  E-value=4.1e-21  Score=204.41  Aligned_cols=167  Identities=25%  Similarity=0.415  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~l   76 (488)
                      |+..++..+++|++.||+|||+.||.|||+||+|+++..+|.+||+|||.+.....+..    .....+|+..|+|||++
T Consensus       417 ~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~  496 (601)
T KOG0590|consen  417 LTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVL  496 (601)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccc
Confidence            45678999999999999999999999999999999999999999999999876544333    34567899999999999


Q ss_pred             cccccCCCCCCC-ccchhhhHHHHHHHhcCCCCCCCCChHHHHH-HHHhCC-----CCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          77 RCGHKEVDGYDN-RIDVWALGITAIELGDGKPPFEDMHPTRALF-QIVRNP-----PPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        77 ~~~~~~~~~~~~-~~DiwslGvil~elltg~~Pf~~~~~~~~~~-~~~~~~-----~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      ..     ..|++ .+||||.|++++.|.+|+.||.........+ ......     ..+......++...+.+|.+||+.
T Consensus       497 ~~-----~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~  571 (601)
T KOG0590|consen  497 TG-----KEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQL  571 (601)
T ss_pred             cc-----cccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccC
Confidence            86     55665 5899999999999999999996554332221 111100     011111234577889999999999


Q ss_pred             CCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         150 NPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       150 dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      +|.+|.|+++|++.+||+.+..-
T Consensus       572 ~P~~R~ti~~i~~d~W~~~i~~c  594 (601)
T KOG0590|consen  572 DPTKRITIEQILNDEWIRSIECC  594 (601)
T ss_pred             ChhheecHHHHhhChHhhhcceE
Confidence            99999999999999999987643

>KOG1290|consensus

Probab=99.82  E-value=3.4e-20  Score=182.99  Aligned_cols=102  Identities=28%  Similarity=0.611  Sum_probs=73.8

Q ss_pred             cCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC---------ChHHHHHHHHhCCCC--------
Q psy9090          65 LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM---------HPTRALFQIVRNPPP--------  127 (488)
Q Consensus        65 ~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~---------~~~~~~~~~~~~~~~--------  127 (488)
                      +.|..|+|||++.+     .+|++.+||||++|+++||+||...|.-.         .....+..++...+.        
T Consensus       412 IQTRQYRapEVllG-----sgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~  486 (590)
T KOG1290|consen  412 IQTRQYRAPEVLLG-----SGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKY  486 (590)
T ss_pred             hhhhhccCcceeec-----CCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcc
Confidence            35677999999998     78999999999999999999999988421         111222222211110        


Q ss_pred             ------------CCCCCCC------------cC----HHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         128 ------------GLYRASN------------WS----QHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       128 ------------~~~~~~~------------~s----~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                                  .+.....            ||    .++.+|+.-||+.+|++|||+.++|+|||+..++.
T Consensus       487 SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPwLn~~~~  558 (590)
T KOG1290|consen  487 SRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPWLNPVAG  558 (590)
T ss_pred             hHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcCccccCCCC
Confidence                        0011112            22    45689999999999999999999999999997654

>KOG0606|consensus

Probab=99.82  E-value=1.5e-20  Score=200.40  Aligned_cols=159  Identities=29%  Similarity=0.483  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---------------CccccccCCCccccchhh
Q psy9090          12 EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---------------DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus        12 qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---------------~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++|||+.||+|||+||+|.+|+.-|++|++|||+++......               -..+..+|||.|+|||++
T Consensus       151 dmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  151 DMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhh
Confidence            45789999999999999999999999999999999999987432110               112456899999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-  155 (488)
                      ..     .+|+..+|||++|+|+|+.+.|..||.+.++.++.-+.+.....-.......++++++++..+|..+|..|. 
T Consensus       231 lr-----qgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qnp~~Rlg  305 (1205)
T KOG0606|consen  231 LR-----QGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQNPLCRLG  305 (1205)
T ss_pred             hh-----hccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhChHhhcc
Confidence            75     789999999999999999999999999999988888877654322223455689999999999999999995 


Q ss_pred             --CHHHHhcCcCCCCCCCCccc
Q psy9090         156 --YMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       156 --s~~ell~hp~f~~~~~~~~~  175 (488)
                        .+-++.+|+||+.++|..+.
T Consensus       306 t~ga~evk~h~ff~~LDw~~ll  327 (1205)
T KOG0606|consen  306 TGGALEVKQHGFFQLLDWKSLL  327 (1205)
T ss_pred             cchhhhhhhccceeecccchhh
Confidence              56788899999999998543

>KOG1024|consensus

Probab=99.82  E-value=8.6e-20  Score=175.65  Aligned_cols=154  Identities=25%  Similarity=0.402  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +..+.-.++.|+..|++|||++|+||.||...|++|++.-+|||+|=.+++..-+..  .....--....||+||.+.. 
T Consensus       394 tt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n-  472 (563)
T KOG1024|consen  394 TTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQN-  472 (563)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhh-
Confidence            455677899999999999999999999999999999999999999999988654321  11112223467999999987 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..|+..+|+||||+++|||+| |+.|+..-++.+....+..+..  +..|-++++++..+|.-||...|++||+++
T Consensus       473 ----~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyR--laQP~NCPDeLf~vMacCWallpeeRPsf~  546 (563)
T KOG1024|consen  473 ----SHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYR--LAQPFNCPDELFTVMACCWALLPEERPSFS  546 (563)
T ss_pred             ----hhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccce--ecCCCCCcHHHHHHHHHHHhcCcccCCCHH
Confidence                679999999999999999987 9999999888776666655543  345778999999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      |+..
T Consensus       547 Qlv~  550 (563)
T KOG1024|consen  547 QLVI  550 (563)
T ss_pred             HHHH
Confidence            9864

>KOG1345|consensus

Probab=99.81  E-value=3.7e-20  Score=170.54  Aligned_cols=163  Identities=21%  Similarity=0.367  Sum_probs=119.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC--CcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD--GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~--~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      -|.-.+.++.|+++||.|||++++||||||.+||||...  ..|||||||+.+..+....   ..-.+..|.+||++..-
T Consensus       119 gE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~---~~~~~~~y~~pe~~~~~  195 (378)
T KOG1345|consen  119 GEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVK---YLEYVNNYHAPELCDTV  195 (378)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCceeh---hhhhhcccCCcHHHhhc
Confidence            366778999999999999999999999999999999543  3699999999876654322   22245678999987543


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC----ChHHHHHHHHhCCCCCCCC-CCCcCHHHHHHHHHhcccCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDM----HPTRALFQIVRNPPPGLYR-ASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~----~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      ..+.-...+..|+|.||+++|.++||.+||...    .+.-...++.....+..+. ...+|+.+..+.++-|.++|++|
T Consensus       196 ~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~a~r~Fkk~lt~~~~dr  275 (378)
T KOG1345|consen  196 VNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSEKALRLFKKSLTPRFKDR  275 (378)
T ss_pred             cccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCHHHHHHHHHhcCCccccc
Confidence            333334578899999999999999999999632    2223334444444333322 34569999999999999999999


Q ss_pred             ---CCHHHHhcCcCCC
Q psy9090         155 ---PYMSELLEHPFIT  167 (488)
Q Consensus       155 ---ps~~ell~hp~f~  167 (488)
                         .+++......|..
T Consensus       276 cki~~~kk~rk~~w~E  291 (378)
T KOG1345|consen  276 CKIWTAKKMRKCLWKE  291 (378)
T ss_pred             chhHHHHHHHHHHHHH
Confidence               4555555555553

>KOG0196|consensus

Probab=99.81  E-value=1.2e-20  Score=194.98  Aligned_cols=153  Identities=26%  Similarity=0.492  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcc-ccccC--CCccccchhhcccc
Q psy9090           4 QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK-KTFLG--SPSWMAPEIMRCGH   80 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~-~~~~g--t~~y~aPE~l~~~~   80 (488)
                      -++--+++.|+.|++||-+.|.|||||...|||++.+-.+|++|||+++.+....... .+.-|  ...|.|||.+..  
T Consensus       731 iQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~--  808 (996)
T KOG0196|consen  731 IQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAY--  808 (996)
T ss_pred             ehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhh--
Confidence            3556789999999999999999999999999999999999999999999775543222 22222  358999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         .+++.++||||+|+++||+++ |..||+++...+.+..+..+.  .++.|.+++..+..|+..||++|-.+||.+.+
T Consensus       809 ---RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gy--RLPpPmDCP~aL~qLMldCWqkdR~~RP~F~q  883 (996)
T KOG0196|consen  809 ---RKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGY--RLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQ  883 (996)
T ss_pred             ---cccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhcc--CCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHH
Confidence               679999999999999999876 999999999888888887764  34457788999999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      |+.+
T Consensus       884 iV~~  887 (996)
T KOG0196|consen  884 IVST  887 (996)
T ss_pred             HHHH
Confidence            9863

>KOG4278|consensus

Probab=99.80  E-value=1.8e-19  Score=181.79  Aligned_cols=149  Identities=24%  Similarity=0.528  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccC---CCccccchhhccccc
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG---SPSWMAPEIMRCGHK   81 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~g---t~~y~aPE~l~~~~~   81 (488)
                      ...+++.||..|+.||..+++|||||...|+|+.++..||++|||+++.+...  ....+.|   ..-|.|||.+..   
T Consensus       366 vLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgD--TYTAHAGAKFPIKWTAPEsLAy---  440 (1157)
T KOG4278|consen  366 VLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGD--TYTAHAGAKFPIKWTAPESLAY---  440 (1157)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCC--ceecccCccCcccccCcccccc---
Confidence            45678899999999999999999999999999999999999999999876543  2222222   457999999875   


Q ss_pred             CCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          82 EVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ..++.++|||+|||+|||+.| |-.||.+.+... .+.++.+.. ....|..+++.+..||..||+.+|..||++.++
T Consensus       441 --NtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSq-VY~LLEkgy-RM~~PeGCPpkVYeLMraCW~WsPsDRPsFaei  516 (1157)
T KOG4278|consen  441 --NTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYGLLEKGY-RMDGPEGCPPKVYELMRACWNWSPSDRPSFAEI  516 (1157)
T ss_pred             --cccccchhhHHHHHHHHHHHhcCCCCCCCccHHH-HHHHHhccc-cccCCCCCCHHHHHHHHHHhcCCcccCccHHHH
Confidence              678999999999999999987 888999877544 344443321 223467889999999999999999999999887


Q ss_pred             hc
Q psy9090         161 LE  162 (488)
Q Consensus       161 l~  162 (488)
                      -+
T Consensus       517 Hq  518 (1157)
T KOG4278|consen  517 HQ  518 (1157)
T ss_pred             HH
Confidence            43

>KOG1094|consensus

Probab=99.80  E-value=1e-19  Score=182.80  Aligned_cols=152  Identities=26%  Similarity=0.418  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcccccCC
Q psy9090           6 IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRCGHKEV   83 (488)
Q Consensus         6 ~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~~~~~~   83 (488)
                      ...|+.||+.|++||.+.++|||||.+.|+|++.++++||+|||+++..-..  .......+-...|||||.+..     
T Consensus       639 ~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsill-----  713 (807)
T KOG1094|consen  639 GVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILL-----  713 (807)
T ss_pred             hHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHh-----
Confidence            4469999999999999999999999999999999999999999999855332  112223445679999999876     


Q ss_pred             CCCCCccchhhhHHHHHHH--hcCCCCCCCCChHHHHHHHH---hCCCC--CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          84 DGYDNRIDVWALGITAIEL--GDGKPPFEDMHPTRALFQIV---RNPPP--GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        84 ~~~~~~~DiwslGvil~el--ltg~~Pf~~~~~~~~~~~~~---~~~~~--~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .+++.++|+|++|+++||+  +|...||...+........-   ....+  -...|.-++..+.++|.+||..+.++|||
T Consensus       714 gkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPs  793 (807)
T KOG1094|consen  714 GKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPS  793 (807)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCC
Confidence            6799999999999999997  57899998887655544332   22111  12346677899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      ++++..
T Consensus       794 Fe~lh~  799 (807)
T KOG1094|consen  794 FEQLHL  799 (807)
T ss_pred             HHHHHH
Confidence            999854

>KOG0603|consensus

Probab=99.79  E-value=6.4e-20  Score=187.20  Aligned_cols=167  Identities=29%  Similarity=0.457  Sum_probs=141.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      .+...+.+...++.+++++|+.+++|||+|++||+++.+|++++.|||+++......    ..+||..|||||++.+   
T Consensus        95 ~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~----~~cgt~eymApEI~~g---  167 (612)
T KOG0603|consen   95 DELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK----IACGTYEYRAPEIING---  167 (612)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhh----hcccchhhhhhHhhhc---
Confidence            467889999999999999999999999999999999999999999999998765431    1289999999999963   


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-----
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-----  156 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-----  156 (488)
                          ....+|+||+|+++++|++|..||..    +...+|.+..   ...|...+..+++++..++..+|..|..     
T Consensus       168 ----h~~a~D~ws~gvl~felltg~~pf~~----~~~~~Il~~~---~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~  236 (612)
T KOG0603|consen  168 ----HLSAADWWSFGVLAFELLTGTLPFGG----DTMKRILKAE---LEMPRELSAEARSLFRQLFKRNPENRLGAGPDG  236 (612)
T ss_pred             ----cCCcccchhhhhhHHHHhhCCCCCch----HHHHHHhhhc---cCCchhhhHHHHHHHHHHHhhCHHHHhccCcch
Confidence                56789999999999999999999987    4455555432   2346778999999999999999999974     


Q ss_pred             HHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         157 MSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                      +.++++|+||..+.|+.+......+++++.
T Consensus       237 ~~eik~h~f~~~i~~~~l~~r~~~~~fkp~  266 (612)
T KOG0603|consen  237 VDEIKQHEFFQSIDWNELEARSRPPPFKPG  266 (612)
T ss_pred             hHHHhccchheeeeHhhHhhcCCCCCCCCc
Confidence            478999999999999988777776666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.78  E-value=2.7e-19  Score=204.25  Aligned_cols=153  Identities=20%  Similarity=0.344  Sum_probs=111.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH---HCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLH---ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.||+.||+|||   +.+|+||||||+||+++.++..++. ||.......    .....+|+.|+|||++.
T Consensus       777 l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~----~~~~~~t~~y~aPE~~~  851 (968)
T PLN00113        777 LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT----DTKCFISSAYVAPETRE  851 (968)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc----CCCccccccccCccccc
Confidence            467888999999999999999   6699999999999999998887775 554432211    12336889999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHh----CC------CCCCCC----CCCcCHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVR----NP------PPGLYR----ASNWSQHYVDF  142 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~----~~------~~~~~~----~~~~s~~~~~l  142 (488)
                      +     ..|+.++||||+||++|||++|+.||...... ..+....+    ..      .+....    ......++.++
T Consensus       852 ~-----~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  926 (968)
T PLN00113        852 T-----KDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNL  926 (968)
T ss_pred             C-----CCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHH
Confidence            5     56899999999999999999999998532110 00111111    00      011100    01112356789


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q psy9090         143 IAECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       143 i~~~L~~dP~~Rps~~ell~h  163 (488)
                      +.+||..+|++|||+.++++.
T Consensus       927 ~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        927 ALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             HHhhCcCCchhCcCHHHHHHH
Confidence            999999999999999999874

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.77  E-value=1.5e-18  Score=160.04  Aligned_cols=126  Identities=42%  Similarity=0.752  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.+++.+|++||+.|++|+||+|.||+++. ++.++|+|||.+..............+...|++||.+...
T Consensus        89 ~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~  168 (215)
T cd00180          89 LSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGK  168 (215)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhccc
Confidence            467889999999999999999999999999999999999 8999999999987654432123345678899999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.+.|+|++|++++++                                  ..+.+++.+|+..+|.+||++.+
T Consensus       169 ----~~~~~~~D~~~lg~~~~~l----------------------------------~~~~~~l~~~l~~~p~~R~~~~~  210 (215)
T cd00180         169 ----GYYSEKSDIWSLGVILYEL----------------------------------PELKDLIRKMLQKDPEKRPSAKE  210 (215)
T ss_pred             ----CCCCchhhhHHHHHHHHHH----------------------------------HHHHHHHHHHhhCCcccCcCHHH
Confidence                2677899999999999998                                  67789999999999999999999


Q ss_pred             HhcCc
Q psy9090         160 LLEHP  164 (488)
Q Consensus       160 ll~hp  164 (488)
                      +++|+
T Consensus       211 l~~~~  215 (215)
T cd00180         211 ILEHL  215 (215)
T ss_pred             HhhCC
Confidence            99875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1025|consensus

Probab=99.76  E-value=2.9e-18  Score=178.17  Aligned_cols=153  Identities=28%  Similarity=0.460  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCcccccc--CCCccccchhhcccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFL--GSPSWMAPEIMRCGH   80 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~--gt~~y~aPE~l~~~~   80 (488)
                      -++...|..||++|+.|||++++|||||-..|+|+.+..++|+.|||+++.............  -.+.|+|-|.++.  
T Consensus       797 sq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~--  874 (1177)
T KOG1025|consen  797 SQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRI--  874 (1177)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhc--
Confidence            356778999999999999999999999999999999999999999999987765433332222  3457899998875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..|+.++||||+||.+||++| |..|+.+.... .+...++.... +..|+..+.++..++.+||..|+..||++++
T Consensus       875 ---~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~-eI~dlle~geR-LsqPpiCtiDVy~~mvkCwmid~~~rp~fke  949 (1177)
T KOG1025|consen  875 ---RKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAE-EIPDLLEKGER-LSQPPICTIDVYMVMVKCWMIDADSRPTFKE  949 (1177)
T ss_pred             ---cCCCchhhhhhhhhhHHHHHhcCCCccCCCCHH-HhhHHHhcccc-CCCCCCccHHHHHHHHHHhccCcccCccHHH
Confidence               789999999999999999988 99999887754 44555544332 6678888999999999999999999999998


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +..
T Consensus       950 l~~  952 (1177)
T KOG1025|consen  950 LAE  952 (1177)
T ss_pred             HHH
Confidence            764

>KOG1152|consensus

Probab=99.75  E-value=7e-19  Score=176.73  Aligned_cols=105  Identities=30%  Similarity=0.603  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++.|++||+.|+++||+.||||||||-+|+.++.+|.+||+|||.+.....  .+...++||..|.|||++.+. 
T Consensus       667 m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~ks--gpfd~f~gtv~~aapevl~g~-  743 (772)
T KOG1152|consen  667 MDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKS--GPFDVFVGTVDYAAPEVLGGE-  743 (772)
T ss_pred             cchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccchhhhcC--CCcceeeeeccccchhhhCCC-
Confidence            68999999999999999999999999999999999999999999999999877654  456788999999999999873 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFED  111 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~  111 (488)
                         .-.+...|||+||++||.++....||..
T Consensus       744 ---~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  744 ---KYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             ---ccCCCcchhhhhhheeeEEEeccCCCcC
Confidence               2235678999999999999999988853

>KOG3653|consensus

Probab=99.73  E-value=4.4e-18  Score=167.81  Aligned_cols=158  Identities=29%  Similarity=0.475  Sum_probs=111.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC---------CCeecccCCCCEEEccCCcEEEEecCCccccccccCc--cccccCCCc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN---------HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPS   69 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~---------givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--~~~~~gt~~   69 (488)
                      ++..+.++++..|+.||+|||.-         .|+|||||..|||+..++...|+|||++..+......  ....+||..
T Consensus       304 isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~R  383 (534)
T KOG3653|consen  304 ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRR  383 (534)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhh
Confidence            36788999999999999999963         5999999999999999999999999999877644222  233689999


Q ss_pred             cccchhhcccccCCCC-CCCccchhhhHHHHHHHhcCCC------------CCC---CCCh-HHHHHHH-HhCC-CCCC-
Q psy9090          70 WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKP------------PFE---DMHP-TRALFQI-VRNP-PPGL-  129 (488)
Q Consensus        70 y~aPE~l~~~~~~~~~-~~~~~DiwslGvil~elltg~~------------Pf~---~~~~-~~~~~~~-~~~~-~~~~-  129 (488)
                      |||||++.+.-.-... --.+.||||+|.++|||+++..            ||.   +.++ .+.++.. ++.. +|.. 
T Consensus       384 YMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p  463 (534)
T KOG3653|consen  384 YMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIP  463 (534)
T ss_pred             hcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCCh
Confidence            9999999763211101 1135899999999999987533            232   1111 1222222 2221 1211 


Q ss_pred             --CCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090         130 --YRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus       130 --~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                        +........+++.+..||+.||+.|+|+.
T Consensus       464 ~~W~~h~~~~~l~et~EeCWDhDaeARLTA~  494 (534)
T KOG3653|consen  464 DAWRKHAGMAVLCETIEECWDHDAEARLTAG  494 (534)
T ss_pred             hhhhcCccHHHHHHHHHHHcCCchhhhhhhH
Confidence              11222246678999999999999999985

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.71  E-value=3.7e-18  Score=164.19  Aligned_cols=138  Identities=25%  Similarity=0.362  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc---cCC
Q psy9090           7 AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH---KEV   83 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~---~~~   83 (488)
                      ..+..|++..+++||+.|+||+||+|+|++++.+|.++|+||+.....+.....   ...+..|.|||......   ...
T Consensus       148 l~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~---~~~~~~~~PPe~~~~~~~~~~~~  224 (288)
T PF14531_consen  148 LSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC---SEFPVAFTPPELESCAGQFGQNN  224 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEG---GGS-TTTS-HHHHHHHTSCHHSE
T ss_pred             HHHHHHHHHHHHHHhhcceEecccceeeEEEcCCCCEEEcChHHHeecCceeec---cCCCcccCChhhhhhhcccCccc
Confidence            456699999999999999999999999999999999999999876654432111   23457899999875421   012


Q ss_pred             CCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          84 DGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        84 ~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      ..++.+.|.|+||+++|.|+||..||....+......       ......++++.++.||..||+.||.+|
T Consensus       225 ~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~-------~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  225 APYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW-------DFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             EEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG-------GGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             ceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc-------cchhcCCcCHHHHHHHHHHccCCcccC
Confidence            3578899999999999999999999976543221111       122233789999999999999999987

>KOG2052|consensus

Probab=99.69  E-value=1e-16  Score=157.16  Aligned_cols=158  Identities=23%  Similarity=0.464  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC--------CCeecccCCCCEEEccCCcEEEEecCCcccccccc----CccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN--------HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----DKKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~--------givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----~~~~~~~gt~   68 (488)
                      ++.+....++..++.||++||-.        .|.|||||..|||+.++|..-|+|+|+|.......    ......+||-
T Consensus       305 v~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTK  384 (513)
T KOG2052|consen  305 VTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTK  384 (513)
T ss_pred             CCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCcccee
Confidence            45677889999999999999953        49999999999999999999999999997654331    2345678999


Q ss_pred             ccccchhhcccccCCCCC--CCccchhhhHHHHHHHhc----------CCCCCCCCCh----HHHHHHHHh--CCCCCCC
Q psy9090          69 SWMAPEIMRCGHKEVDGY--DNRIDVWALGITAIELGD----------GKPPFEDMHP----TRALFQIVR--NPPPGLY  130 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~--~~~~DiwslGvil~ellt----------g~~Pf~~~~~----~~~~~~~~~--~~~~~~~  130 (488)
                      .|||||++...- +...+  -..+||||||.++||+..          -++||.+..+    .+.+.+++.  ...|.. 
T Consensus       385 RYMAPEvLdeti-n~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~i-  462 (513)
T KOG2052|consen  385 RYMAPEVLDETI-NMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNI-  462 (513)
T ss_pred             eccChHHhhhhc-ChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCC-
Confidence            999999996411 00111  135899999999999864          2678865433    334444432  222322 


Q ss_pred             CCCCcC-----HHHHHHHHHhcccCCCCCCCHHHHh
Q psy9090         131 RASNWS-----QHYVDFIAECLEKNPEHRPYMSELL  161 (488)
Q Consensus       131 ~~~~~s-----~~~~~li~~~L~~dP~~Rps~~ell  161 (488)
                       |..|+     ..+..+|+.||..||.-|.|+-.+.
T Consensus       463 -pnrW~s~~~l~~m~klMkeCW~~Np~aRltALriK  497 (513)
T KOG2052|consen  463 -PNRWKSDPALRVMAKLMKECWYANPAARLTALRIK  497 (513)
T ss_pred             -CcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHH
Confidence             23332     3456789999999999999986654

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.67  E-value=2.4e-16  Score=147.85  Aligned_cols=121  Identities=36%  Similarity=0.605  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.|++.++.+||+++++|+||+|.||+++.++.++|+|||.+....... .......++..|++||.+.. 
T Consensus        95 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~-  173 (225)
T smart00221       95 LSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLG-  173 (225)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcC-
Confidence            4677889999999999999999999999999999999999999999999887654331 12234567889999999841 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCC-CChHHHHHHHHhCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFED-MHPTRALFQIVRNP  125 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~-~~~~~~~~~~~~~~  125 (488)
                         ...++.++|+|+||+++++|++|+.||.. ..+...+.+.+...
T Consensus       174 ---~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~~  217 (225)
T smart00221      174 ---GKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSFG  217 (225)
T ss_pred             ---CCCCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhcC
Confidence               25677799999999999999999999977 45554454444443

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1240|consensus

Probab=99.66  E-value=2e-16  Score=169.54  Aligned_cols=158  Identities=18%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccc----cccCCCccccch
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKK----TFLGSPSWMAPE   74 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~----~~~gt~~y~aPE   74 (488)
                      ..-+-+.|+.||+.||..||..||+|||||.+||||++-+.+.|+||...+..--+.+   ...    +.....+|+|||
T Consensus       118 ~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPE  197 (1431)
T KOG1240|consen  118 VLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPE  197 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChH
Confidence            3567889999999999999999999999999999999999999999987765421111   111    122335899999


Q ss_pred             hhcccc-----cCCCC-CCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCC-C-CCCCCCcCHHHHHHHHH
Q psy9090          75 IMRCGH-----KEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP-G-LYRASNWSQHYVDFIAE  145 (488)
Q Consensus        75 ~l~~~~-----~~~~~-~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~~~~li~~  145 (488)
                      .+....     ....+ .+++-||||+||++.||++ |++||.-    .++.....+... . .....--+..+++||..
T Consensus       198 RFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L----SQL~aYr~~~~~~~e~~Le~Ied~~~Rnlil~  273 (1431)
T KOG1240|consen  198 RFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL----SQLLAYRSGNADDPEQLLEKIEDVSLRNLILS  273 (1431)
T ss_pred             hhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH----HHHHhHhccCccCHHHHHHhCcCccHHHHHHH
Confidence            886521     00122 6788999999999999977 7998853    122222221100 0 00000014467899999


Q ss_pred             hcccCCCCCCCHHHHhcC
Q psy9090         146 CLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~h  163 (488)
                      |++.||++|.|+++.|+.
T Consensus       274 Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  274 MIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHccCchhccCHHHHHHh
Confidence            999999999999999874

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.66  E-value=1.4e-15  Score=149.39  Aligned_cols=167  Identities=34%  Similarity=0.571  Sum_probs=127.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccC------ccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFD------KKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~------~~~~~~gt~~y~aP   73 (488)
                      +++..+..++.|++.++.|+|+.+++|||+||+||+++..+ .++++|||.+........      ......||+.|++|
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p  177 (384)
T COG0515          98 LSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAP  177 (384)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCH
Confidence            46788999999999999999999999999999999999988 799999999875443221      24567899999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhCCCCC-CCCCCCc------CHHHHHHH
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRNPPPG-LYRASNW------SQHYVDFI  143 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~~~-~~~~~~~------s~~~~~li  143 (488)
                      |.+.+..  ...++...|+||+|++++++++|..||.....   .......+...... .......      ...+.+++
T Consensus       178 e~~~~~~--~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (384)
T COG0515         178 EVLLGLS--LAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLL  255 (384)
T ss_pred             HHhcCCC--CCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHH
Confidence            9987510  03567889999999999999999999877653   23333333222211 1111111      25788999


Q ss_pred             HHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         144 AECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      .+++..+|..|.+..+...++|....
T Consensus       256 ~~~~~~~~~~r~~~~~~~~~~~~~~~  281 (384)
T COG0515         256 KKLLAKDPKNRLSSSSDLSHDLLAHL  281 (384)
T ss_pred             HHHHhcCchhcCCHHHHhhchHhhCc
Confidence            99999999999999998888666543

>KOG4158|consensus

Probab=99.64  E-value=1.1e-15  Score=147.91  Aligned_cols=155  Identities=24%  Similarity=0.320  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc--cCC--cEEEEecCCccccccc------cCccccccCCCccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDG--EVKIVDFGLSRETANT------FDKKKTFLGSPSWM   71 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~--~~~--~vkL~Dfg~a~~~~~~------~~~~~~~~gt~~y~   71 (488)
                      +....+.++.|+++|+.|||++||.|||+|.+|||+.  .++  .+.++|||.+--....      .......-|....|
T Consensus       339 s~r~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lm  418 (598)
T KOG4158|consen  339 SYRTGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLM  418 (598)
T ss_pred             chHHHHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceec
Confidence            3456678999999999999999999999999999984  333  4789999976322110      01112334677889


Q ss_pred             cchhhcccccCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh-CCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          72 APEIMRCGHKEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-NPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        72 aPE~l~~~~~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      |||+........... -.++|.|+.|.+.||+++...||.+......-.+-.+ ...|.  .+...++.+++++..+|+.
T Consensus       419 APEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPa--lp~~vpp~~rqlV~~lL~r  496 (598)
T KOG4158|consen  419 APEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPA--LPSRVPPVARQLVFDLLKR  496 (598)
T ss_pred             chhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCCC--CcccCChHHHHHHHHHhcC
Confidence            999986532111111 2489999999999999999999987432221111111 11222  3566789999999999999


Q ss_pred             CCCCCCCHH
Q psy9090         150 NPEHRPYMS  158 (488)
Q Consensus       150 dP~~Rps~~  158 (488)
                      ||++|+|+.
T Consensus       497 ~pskRvsp~  505 (598)
T KOG4158|consen  497 DPSKRVSPN  505 (598)
T ss_pred             CccccCCcc
Confidence            999999864

>KOG1033|consensus

Probab=99.59  E-value=5.2e-16  Score=155.93  Aligned_cols=151  Identities=28%  Similarity=0.449  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc------CccccccCCCccccchhh
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF------DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~------~~~~~~~gt~~y~aPE~l   76 (488)
                      ...+..++.|+..++.|   +|.+|+|+||.||+...+..+||+|||+.+......      .......||..||+||.+
T Consensus       358 ~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi  434 (516)
T KOG1033|consen  358 LSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQI  434 (516)
T ss_pred             hhHHHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHH
Confidence            34678899999999999   999999999999999999999999999987654432      234566899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..|+.++||||||++|+|++. -..++.-   ......+..+..|+.. ..+ .+.-..|+.+||.+.|.+||
T Consensus       435 ~g-----~~y~~kvdIyaLGlil~EL~~~f~T~~er---~~t~~d~r~g~ip~~~-~~d-~p~e~~ll~~lls~~p~~RP  504 (516)
T KOG1033|consen  435 RG-----QQYSEKVDIYALGLILAELLIQFSTQFER---IATLTDIRDGIIPPEF-LQD-YPEEYTLLQQLLSPSPEERP  504 (516)
T ss_pred             hh-----hhhhhhcchhhHHHHHHHHHHHhccHHHH---HHhhhhhhcCCCChHH-hhc-CcHHHHHHHHhcCCCcccCc
Confidence            87     779999999999999999987 2222221   1112222222222111 112 23446899999999999999


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      ++.+.--|+|.
T Consensus       505 ~~~~~~~~~~~  515 (516)
T KOG1033|consen  505 SAIEVALHEFL  515 (516)
T ss_pred             hHHHHhhhhhc
Confidence            87777667664

>KOG1164|consensus

Probab=99.57  E-value=2.3e-14  Score=143.25  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-----CcEEEEecCCcc--cccccc------C-c-ccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-----GEVKIVDFGLSR--ETANTF------D-K-KKTFL   65 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-----~~vkL~Dfg~a~--~~~~~~------~-~-~~~~~   65 (488)
                      |+...+..++.|++.+|++||+.|++||||||+|+++...     ..+.|.|||+++  ......      . . ...+.
T Consensus       119 fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~r  198 (322)
T KOG1164|consen  119 FSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFR  198 (322)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCC
Confidence            5678899999999999999999999999999999999865     358999999998  321111      1 1 22456


Q ss_pred             CCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCC--CCCCcCHHHHHHH
Q psy9090          66 GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY--RASNWSQHYVDFI  143 (488)
Q Consensus        66 gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~li  143 (488)
                      ||..|.++.+..+     ...+++.|+||++.++.++..|..||..........+..........  .....+..+..+.
T Consensus       199 GT~ry~S~~~H~~-----~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (322)
T KOG1164|consen  199 GTLRYASINVHLG-----IEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKIL  273 (322)
T ss_pred             CccccccHHHhCC-----CccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHH
Confidence            9999999999876     56788999999999999999999999776543333332222111111  1222356677777


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      ..+-..+...+|....+..
T Consensus       274 ~~~~~~~~~~~Pdy~~~~~  292 (322)
T KOG1164|consen  274 EYIDSLDYEDKPDYEKLAE  292 (322)
T ss_pred             HHhhccCCcCCCCHHHHHH
Confidence            7777788888998776654

>KOG1165|consensus

Probab=99.40  E-value=2.1e-12  Score=122.83  Aligned_cols=152  Identities=20%  Similarity=0.380  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-----cEEEEecCCccccccccC-------ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-----EVKIVDFGLSRETANTFD-------KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-----~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~   68 (488)
                      ||.+.++.++.|++.-++|+|++.+|+|||||+|+||...+     .|.++|||+++....+..       ...+..||.
T Consensus       121 FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTA  200 (449)
T KOG1165|consen  121 FSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTA  200 (449)
T ss_pred             ccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccce
Confidence            56788999999999999999999999999999999998654     489999999987654322       235567999


Q ss_pred             ccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH--HHHHHhCC---CCCCCCCCCcCHHHHHHH
Q psy9090          69 SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA--LFQIVRNP---PPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~--~~~~~~~~---~~~~~~~~~~s~~~~~li  143 (488)
                      .||+-....+     ..-+.+.|+=|||-+++..+-|..||.+......  ..+.+...   .+.......++.++..-+
T Consensus       201 RYMSINTHlG-----rEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl  275 (449)
T KOG1165|consen  201 RYMSINTHLG-----REQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFATYL  275 (449)
T ss_pred             eeeEeecccc-----chhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHHHHH
Confidence            9999888776     4457789999999999999999999987643222  22222111   111111234566665555


Q ss_pred             HHhcccCCCCCCCH
Q psy9090         144 AECLEKNPEHRPYM  157 (488)
Q Consensus       144 ~~~L~~dP~~Rps~  157 (488)
                      .-.-..+-.+-|..
T Consensus       276 ~yvR~L~F~E~PDY  289 (449)
T KOG1165|consen  276 RYVRRLDFFETPDY  289 (449)
T ss_pred             HHHHhcCcccCCCH
Confidence            55545555555554

>KOG1163|consensus

Probab=99.38  E-value=1.1e-12  Score=119.72  Aligned_cols=153  Identities=14%  Similarity=0.322  Sum_probs=113.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccC-------ccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFD-------KKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y   70 (488)
                      ++.+.+..++-|++.-++|+|.+++|||||||+|+|..-   ...+.|+|||+++...+...       ......||..|
T Consensus       108 ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRY  187 (341)
T KOG1163|consen  108 FTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARY  187 (341)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeee
Confidence            456788899999999999999999999999999999963   44689999999987643211       22455789999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHH---HHHhCC--CCCCCCCCCcCHHHHHHHHH
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF---QIVRNP--PPGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~---~~~~~~--~~~~~~~~~~s~~~~~li~~  145 (488)
                      .+-....+     ..-+...|+-|+|.+|..+..|..||.+.......+   +|....  .+.......+|.++...+.-
T Consensus       188 ASinAh~g-----~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y  262 (341)
T KOG1163|consen  188 ASINAHLG-----IEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNY  262 (341)
T ss_pred             hhhhhhhh-----hhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHH
Confidence            88776654     334678899999999999999999998875433222   222211  11112245678888888888


Q ss_pred             hcccCCCCCCCHH
Q psy9090         146 CLEKNPEHRPYMS  158 (488)
Q Consensus       146 ~L~~dP~~Rps~~  158 (488)
                      |-..--++-|...
T Consensus       263 ~R~L~F~E~Pdy~  275 (341)
T KOG1163|consen  263 CRGLGFEEKPDYM  275 (341)
T ss_pred             HhhcCCCCCCcHH
Confidence            8877777777643

>KOG1023|consensus

Probab=99.38  E-value=1.8e-12  Score=132.85  Aligned_cols=159  Identities=23%  Similarity=0.447  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC-eecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcccc
Q psy9090           4 QHIAFILKEIITGMVFLHENHV-IHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~LH~~gi-vHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      --...+++.|+.||.|||.--| .|+.+++.|++++..-.+||+|||+.......  ........-...|.|||.++...
T Consensus        48 ~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~  127 (484)
T KOG1023|consen   48 FFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGAL  127 (484)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccc
Confidence            3456788999999999998766 89999999999999999999999987655321  01111112334689999998742


Q ss_pred             cCC--CCCCCccchhhhHHHHHHHhcCCCCCCCC----ChHHHHHHHHhCCC----CCCCCCCCcCHHHHHHHHHhcccC
Q psy9090          81 KEV--DGYDNRIDVWALGITAIELGDGKPPFEDM----HPTRALFQIVRNPP----PGLYRASNWSQHYVDFIAECLEKN  150 (488)
Q Consensus        81 ~~~--~~~~~~~DiwslGvil~elltg~~Pf~~~----~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~li~~~L~~d  150 (488)
                      ...  ...+.+.|+||+|++++|+++...||...    .+.+.+.++.....    |.........+.+..+++.||..+
T Consensus       128 ~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~  207 (484)
T KOG1023|consen  128 SQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEI  207 (484)
T ss_pred             cccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccC
Confidence            111  12467899999999999999999999652    22345555444122    222111234567899999999999


Q ss_pred             CCCCCCHHHHhc
Q psy9090         151 PEHRPYMSELLE  162 (488)
Q Consensus       151 P~~Rps~~ell~  162 (488)
                      |..||+++++-.
T Consensus       208 P~~rPs~~~i~~  219 (484)
T KOG1023|consen  208 PEKRPSIEQIRS  219 (484)
T ss_pred             hhhCccHHHHHh
Confidence            999999998754

>KOG0590|consensus

Probab=99.37  E-value=8.8e-14  Score=148.50  Aligned_cols=163  Identities=29%  Similarity=0.425  Sum_probs=128.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHH-HCCCeecccCCCCEEEccCC-cEEEEecCCcccccc-cc--CccccccC-CCccccchh
Q psy9090           2 SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETAN-TF--DKKKTFLG-SPSWMAPEI   75 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH-~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~-~~--~~~~~~~g-t~~y~aPE~   75 (488)
                      +...+..++.|+..++.|+| ..++.|||+||+|.+++.++ .+++.|||+++.... ..  ......+| ++.|.|||.
T Consensus       121 ~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~  200 (601)
T KOG0590|consen  121 SSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEH  200 (601)
T ss_pred             CCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCccc
Confidence            45667899999999999999 99999999999999999999 999999999987654 21  12344578 999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHH-HHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF-QIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~-~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~  153 (488)
                      ..+.    ....+..|+||+|+++..+++|..||.........+ ...... ..........+....+++.++|..+|..
T Consensus       201 ~~~~----~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~  276 (601)
T KOG0590|consen  201 LSGK----AYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSN  276 (601)
T ss_pred             ccch----hhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCchh
Confidence            8752    234578999999999999999999997654332211 111111 1122234556888999999999999999


Q ss_pred             CCCHHHHhcCcCCCC
Q psy9090         154 RPYMSELLEHPFITS  168 (488)
Q Consensus       154 Rps~~ell~hp~f~~  168 (488)
                      |.+.+++..+||+..
T Consensus       277 r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  277 RLSIEELKLDNWLSS  291 (601)
T ss_pred             ccccccccccccccc
Confidence            999999999999987

>KOG0606|consensus

Probab=99.30  E-value=2.7e-12  Score=138.17  Aligned_cols=172  Identities=25%  Similarity=0.415  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccc------cc-------------------
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA------NT-------------------   57 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~------~~-------------------   57 (488)
                      ++-++.++..+++++++||...+.|+|++|.|+|+..+|+.++.|||......      ..                   
T Consensus       903 aepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~  982 (1205)
T KOG0606|consen  903 AEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRP  982 (1205)
T ss_pred             cccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCcccccccccccc
Confidence            44567788899999999999999999999999999999999999998432110      00                   


Q ss_pred             -c-----CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCC
Q psy9090          58 -F-----DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYR  131 (488)
Q Consensus        58 -~-----~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                       .     .......||+.|.+||.+.+     ......+|+|++|+++++.++|.+||....+......+.....+...-
T Consensus       983 ~l~~~~~~~~~~~~~t~~~laPe~~lg-----~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g 1057 (1205)
T KOG0606|consen  983 QLSADEARRKHAVVGTPDYLAPEILLG-----RRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEG 1057 (1205)
T ss_pred             ccccchhhccccccCCCcccCCccccc-----ccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCC
Confidence             0     01234578999999999987     455678999999999999999999999998877776666655444444


Q ss_pred             CCCcCHHHHHHHHHhcccCCCCCCCHH---HHhcCcCCCCCCCCccccccc
Q psy9090         132 ASNWSQHYVDFIAECLEKNPEHRPYMS---ELLEHPFITSLPENDLHLSTV  179 (488)
Q Consensus       132 ~~~~s~~~~~li~~~L~~dP~~Rps~~---ell~hp~f~~~~~~~~~~~~~  179 (488)
                      +...+..+++++..+|..+|.+|..+.   ++-.|+||+..+|..+.....
T Consensus      1058 ~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~~~~l~~q~~ 1108 (1205)
T KOG0606|consen 1058 PEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVDWENLALQKA 1108 (1205)
T ss_pred             ccccChhhhhhhhhhhccCchhccCcccccccccCCccCCCCccccccccC
Confidence            566789999999999999999999887   888999999999987755543

>KOG0195|consensus

Probab=99.29  E-value=9e-12  Score=115.50  Aligned_cols=148  Identities=24%  Similarity=0.398  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEE--EecCCccccccccCccccccCCCccccchhhcc
Q psy9090           3 EQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKI--VDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL--~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      ..++-.++..|+.|++|||+..  |.--.|....++++++-..+|  +|--++-.       .....-.|.|++||.++.
T Consensus       288 ~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsfq-------e~gr~y~pawmspealqr  360 (448)
T KOG0195|consen  288 HSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQ-------EVGRAYSPAWMSPEALQR  360 (448)
T ss_pred             cchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeeee-------ccccccCcccCCHHHHhc
Confidence            4577889999999999999975  445578888999998776554  45333211       112345689999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh-CCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                      ...  ..--.++|+|||+++++|+.|...||.+..+.+.-.++-- +..+  ..|+.++..+..|+.-|+..||.+||.+
T Consensus       361 kpe--d~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv--~ippgis~hm~klm~icmnedpgkrpkf  436 (448)
T KOG0195|consen  361 KPE--DLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRV--HIPPGISRHMNKLMNICMNEDPGKRPKF  436 (448)
T ss_pred             Cch--hcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccc--cCCCCccHHHHHHHHHHhcCCCCcCCCc
Confidence            322  1123579999999999999999999998888766555532 2222  2467789999999999999999999998


Q ss_pred             HHHh
Q psy9090         158 SELL  161 (488)
Q Consensus       158 ~ell  161 (488)
                      +.++
T Consensus       437 dmiv  440 (448)
T KOG0195|consen  437 DMIV  440 (448)
T ss_pred             ceeh
Confidence            7654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.27  E-value=5.7e-12  Score=115.72  Aligned_cols=103  Identities=19%  Similarity=0.166  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCeeccc-CCCCEEEccCCcEEEEecCCccccccccCc-------------cccccCCCcccc
Q psy9090           7 AFILKEIITGMVFLHENHVIHRDL-RGSNVLLTKDGEVKIVDFGLSRETANTFDK-------------KKTFLGSPSWMA   72 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~givHrDl-kp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-------------~~~~~gt~~y~a   72 (488)
                      ..++.|++.+|.+||++||+|||| ||+|||++.+|.++|+|||++.........             ......++.|+.
T Consensus        94 ~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~  173 (218)
T PRK12274         94 LAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALT  173 (218)
T ss_pred             HHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            457899999999999999999999 799999999999999999999855433210             011135778888


Q ss_pred             chhhcccccCCCCCC-CccchhhhHHHHHHHhcCCCCCCCCC
Q psy9090          73 PEIMRCGHKEVDGYD-NRIDVWALGITAIELGDGKPPFEDMH  113 (488)
Q Consensus        73 PE~l~~~~~~~~~~~-~~~DiwslGvil~elltg~~Pf~~~~  113 (488)
                      |+-..--    ...+ ...++++.|+-+|.++|+..|..+..
T Consensus       174 ~~~~~~l----~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        174 PVERRVL----KRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             HHHHhhh----ccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence            8754321    1222 46788899999999999999876543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.21  E-value=1.5e-11  Score=123.52  Aligned_cols=72  Identities=22%  Similarity=0.313  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCeeccc-CCCCEEEccCCcEEEEecCCccccccccC--------ccccccCCCccccchhhc
Q psy9090           7 AFILKEIITGMVFLHENHVIHRDL-RGSNVLLTKDGEVKIVDFGLSRETANTFD--------KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~givHrDl-kp~NILl~~~~~vkL~Dfg~a~~~~~~~~--------~~~~~~gt~~y~aPE~l~   77 (488)
                      ..++.|++++|.|||++||+|||| ||+|||++.++.+||+|||+++.......        ......+++.|+|||.+.
T Consensus       114 ~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~  193 (365)
T PRK09188        114 PAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALT  193 (365)
T ss_pred             HHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCC
Confidence            468899999999999999999999 99999999999999999999986543221        113556888899999986


Q ss_pred             c
Q psy9090          78 C   78 (488)
Q Consensus        78 ~   78 (488)
                      .
T Consensus       194 ~  194 (365)
T PRK09188        194 P  194 (365)
T ss_pred             h
Confidence            5

>KOG2137|consensus

Probab=99.11  E-value=8.8e-11  Score=122.25  Aligned_cols=167  Identities=17%  Similarity=0.265  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCc---------cccccCCCccccchhhcccc
Q psy9090          11 KEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---------KKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus        11 ~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---------~~~~~gt~~y~aPE~l~~~~   80 (488)
                      .+++.|+.|+|.. ++||++|.|++|.++.+|.+||+.|+++.....+...         .....-...|.|||++..  
T Consensus       106 ~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~--  183 (700)
T KOG2137|consen  106 GNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG--  183 (700)
T ss_pred             hcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc--
Confidence            4556889999975 8999999999999999999999999987654331110         011123457999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHh-cCCCCCCCCChHHHHHHHH--hCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRALFQIV--RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ell-tg~~Pf~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                         ...+.++|++|+||++|.+. .|+.-+...... ......  ...........++++++++-+.++|..++..||++
T Consensus       184 ---~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~-~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~  259 (700)
T KOG2137|consen  184 ---TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGL-LSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTL  259 (700)
T ss_pred             ---ccccccccceeeeeEEEEEecCCcchhhccCCc-chhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcch
Confidence               45678999999999999998 566555443221 111111  11222222346789999999999999999999999


Q ss_pred             HHHhcCcCCCCCCCCccccccccccc
Q psy9090         158 SELLEHPFITSLPENDLHLSTVNCQY  183 (488)
Q Consensus       158 ~ell~hp~f~~~~~~~~~~~~~~~~~  183 (488)
                      ..++..|||.+..-..+.......+.
T Consensus       260 ~~l~~~~ff~D~~~~aLrfLD~l~~k  285 (700)
T KOG2137|consen  260 DLLLSIPFFSDPGLKALRFLDDLPQK  285 (700)
T ss_pred             hhhhcccccCCchhhhhhhccccccc
Confidence            99999999998766666555555553

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.07  E-value=1.7e-10  Score=106.15  Aligned_cols=54  Identities=30%  Similarity=0.437  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHH-HHCCCeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFL-HENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~L-H~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      ++++++..++.|++.+|.+| |+.||+||||||+|||++ ++.++|+|||++....
T Consensus       114 ~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         114 LSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEEEEccccccCC
Confidence            46788999999999999999 799999999999999998 5889999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.03  E-value=1.2e-10  Score=109.22  Aligned_cols=76  Identities=24%  Similarity=0.339  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccCCCCCCC
Q psy9090           9 ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN   88 (488)
Q Consensus         9 i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~   88 (488)
                      ...+|+.+|..||+.|++|||+||+||+++.+| ++|+|||..+.....  ...          ..++..     ..|+.
T Consensus       140 ~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~--~a~----------d~~vle-----r~y~~  201 (232)
T PRK10359        140 VKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQR--KAK----------DRIDLE-----RHYGI  201 (232)
T ss_pred             HHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccccch--hhH----------HHHHHH-----hHhcc
Confidence            467999999999999999999999999999988 999999987644221  000          012222     34667


Q ss_pred             ccchhhhHHHHHHH
Q psy9090          89 RIDVWALGITAIEL  102 (488)
Q Consensus        89 ~~DiwslGvil~el  102 (488)
                      ++|+||||+.+..+
T Consensus       202 ~~di~~lg~~~~~~  215 (232)
T PRK10359        202 KNEIKDLGYYLLIY  215 (232)
T ss_pred             cccccceeEeehHH
Confidence            89999999987655

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.02  E-value=4.5e-10  Score=103.44  Aligned_cols=54  Identities=24%  Similarity=0.386  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      +++.++..++.|++.++.+||+ +||+||||||+||+++ ++.++|+|||+++...
T Consensus       114 ~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         114 LEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            3567889999999999999999 9999999999999999 8999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1166|consensus

Probab=99.00  E-value=5.2e-10  Score=122.73  Aligned_cols=102  Identities=24%  Similarity=0.276  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-------CCcEEEEecCCccccccc--cCccccccCCCccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-------DGEVKIVDFGLSRETANT--FDKKKTFLGSPSWM   71 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-------~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~   71 (488)
                      |+|..+.++..||+..|++||..+|||+||||+|+||..       +--++|+|||.+..+.--  .......++|-.+-
T Consensus       791 m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~  870 (974)
T KOG1166|consen  791 MDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFD  870 (974)
T ss_pred             CCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccch
Confidence            567889999999999999999999999999999999953       234899999998654322  23445667889999


Q ss_pred             cchhhcccccCCCCCCCccchhhhHHHHHHHhcCCC
Q psy9090          72 APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP  107 (488)
Q Consensus        72 aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~  107 (488)
                      ++|+..+     .+++..+|.|.|+.+++-||.|+.
T Consensus       871 C~EM~~g-----rpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  871 CIEMREG-----RPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             hHHHhcC-----CCCchhhhhHHHHHHHHHHHHHHH
Confidence            9999987     788999999999999999999864

>KOG1266|consensus

Probab=98.93  E-value=1.4e-09  Score=103.92  Aligned_cols=159  Identities=19%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEEEecCCc--cccccc--cCccccccCCCccccch
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANT--FDKKKTFLGSPSWMAPE   74 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a--~~~~~~--~~~~~~~~gt~~y~aPE   74 (488)
                      |++...++|+-||+.||.|||+..  |+|+++..+.|++..+|-||+.--.-.  ......  ........+.++|.+||
T Consensus       173 ~~~~~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~  252 (458)
T KOG1266|consen  173 LFQKAWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPE  252 (458)
T ss_pred             hhHHHHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCC
Confidence            356788999999999999999986  999999999999999999987642211  100000  00111224568899999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCC-CCCh---HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccC
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE-DMHP---TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKN  150 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~-~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  150 (488)
                      .-..     ...+..+|||++|....+|..+..--. +...   ...+...+....         ...-++++.+||...
T Consensus       253 sg~~-----tn~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~~le---------n~lqr~~i~kcl~~e  318 (458)
T KOG1266|consen  253 SGTT-----TNTTGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVIIGLE---------NGLQRGSITKCLEGE  318 (458)
T ss_pred             cCcc-----cccccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhheeecc---------CccccCcCcccccCC
Confidence            7543     445668999999999999977654321 1111   111111111111         112246899999999


Q ss_pred             CCCCCCHHHHhcCcCCCCCCCCc
Q psy9090         151 PEHRPYMSELLEHPFITSLPEND  173 (488)
Q Consensus       151 P~~Rps~~ell~hp~f~~~~~~~  173 (488)
                      |..||++.+++.||..-.++...
T Consensus       319 P~~rp~ar~llfHpllfeVhslk  341 (458)
T KOG1266|consen  319 PNGRPDARLLLFHPLLFEVHSLK  341 (458)
T ss_pred             CCCCcchhhhhcCceeeecchHH
Confidence            99999999999999887765543

>KOG0601|consensus

Probab=98.87  E-value=1.3e-09  Score=112.17  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=122.0

Q ss_pred             CCHHHHHHHHHHHHH----HHHHHHHCCCeecccCCCCEEEccC-CcEEEEecCCccccccccCcc-----ccccCCCcc
Q psy9090           1 MSEQHIAFILKEIIT----GMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFDKK-----KTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~----aL~~LH~~givHrDlkp~NILl~~~-~~vkL~Dfg~a~~~~~~~~~~-----~~~~gt~~y   70 (488)
                      +++..++.++.+..+    ||.++|..+++|-|+||+||++..+ ...+++|||+...+.......     ....|...|
T Consensus       215 ~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y  294 (524)
T KOG0601|consen  215 LPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIY  294 (524)
T ss_pred             CCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceE
Confidence            467889999999999    9999999999999999999999999 789999999988776543221     222577889


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccC
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKN  150 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  150 (488)
                      ++||...+      -++...|++++|.+..+..++..+...... ..+.++.....+.. .....+..+...+..|++.+
T Consensus       295 ~~ke~~~~------l~~~~~di~sl~ev~l~~~l~~~~~~~g~~-~~W~~~r~~~ip~e-~~~~~s~~l~~~~~~~~d~~  366 (524)
T KOG0601|consen  295 AAKELLNG------LATFASDIFSLGEVILEAILGSHLPSVGKN-SSWSQLRQGYIPLE-FCEGGSSSLRSVTSQMLDED  366 (524)
T ss_pred             eChhhhcc------ccchHhhhcchhhhhHhhHhhcccccCCCC-CCccccccccCchh-hhcCcchhhhhHHHHhcCcc
Confidence            99999874      578899999999999999888776643310 11111111111111 12234566667999999999


Q ss_pred             CCCCCCHHHHhcCcCCCCC
Q psy9090         151 PEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       151 P~~Rps~~ell~hp~f~~~  169 (488)
                      |-.|++.+.+++|+++.+.
T Consensus       367 ~~~~~~~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  367 PRLRLTAQILTALNVIHSK  385 (524)
T ss_pred             hhhhhHHHHHhccccccch
Confidence            9999999999999999753

>smart00090 RIO RIO-like kinase

Probab=98.74  E-value=1.2e-08  Score=97.22  Aligned_cols=52  Identities=31%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-CeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~g-ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      +.++..++.||+.+|.+||++| ++||||||+||+++ ++.++|+|||.+....
T Consensus       147 ~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      147 EEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            4457789999999999999999 99999999999999 8899999999886543

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.63  E-value=5e-07  Score=89.51  Aligned_cols=156  Identities=16%  Similarity=0.195  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccC
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKE   82 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~   82 (488)
                      ..-+.+..+.|+.+.+-||..|-+-+|+.++|+|+++++.|.|.|-....... ........+|.+.|.+||.-.-..-.
T Consensus       116 w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~-ng~~~~cpVg~~eftPPElQ~~~sf~  194 (637)
T COG4248         116 WDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINA-NGTLHLCPVGVSEFTPPELQTLPSFV  194 (637)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEcccceeecc-CCceEecccCccccCCHHHhcccccc
Confidence            45567889999999999999999999999999999999999999854332222 22344567899999999975421111


Q ss_pred             CCCCCCccchhhhHHHHHHHhcC-CCCCCCCChH-----HHHHHHHh-------------CCCCCCCCCCCcCHHHHHHH
Q psy9090          83 VDGYDNRIDVWALGITAIELGDG-KPPFEDMHPT-----RALFQIVR-------------NPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        83 ~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~-----~~~~~~~~-------------~~~~~~~~~~~~s~~~~~li  143 (488)
                      ...-+...|.|.||+++++++.| ++||.+....     ..-..|-.             .+.|..+...-+++.+..|.
T Consensus       195 g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF  274 (637)
T COG4248         195 GFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALF  274 (637)
T ss_pred             ccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHH
Confidence            12345678999999999999876 9999653210     00001110             11122222233478889999


Q ss_pred             HHhccc--CCCCCCCHHH
Q psy9090         144 AECLEK--NPEHRPYMSE  159 (488)
Q Consensus       144 ~~~L~~--dP~~Rps~~e  159 (488)
                      .+|+..  ++.-|||++.
T Consensus       275 ~qaF~~~~~~~~RP~a~a  292 (637)
T COG4248         275 QQAFTESGVATPRPTAKA  292 (637)
T ss_pred             HHHhcccCCCCCCCCHHH
Confidence            999865  3568999754

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.61  E-value=5.2e-08  Score=93.00  Aligned_cols=45  Identities=29%  Similarity=0.421  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090           9 ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus         9 i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      .+.||+.+|.+||++||+||||||.|||++.++.++|+|||.+..
T Consensus       147 ~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        147 QWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            467899999999999999999999999999999999999998754

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.60  E-value=5.9e-08  Score=89.84  Aligned_cols=51  Identities=27%  Similarity=0.385  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      ....++.+++.++.++|+.|++||||||+||+++.++.++|+|||.+....
T Consensus       126 ~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         126 DPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            456789999999999999999999999999999999999999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK10345 hypothetical protein; Provisional

Probab=98.55  E-value=8.4e-08  Score=89.43  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHH-HHHHHCCCeecccCCCCEEEccC----CcEEEEecCCc
Q psy9090           7 AFILKEIITGM-VFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLS   51 (488)
Q Consensus         7 ~~i~~qil~aL-~~LH~~givHrDlkp~NILl~~~----~~vkL~Dfg~a   51 (488)
                      ..++.|++.++ +|||+++|+||||||+|||++.+    +.++|+||+.+
T Consensus       107 ~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        107 VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            35688888888 99999999999999999999743    37999995443

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.54  E-value=9.9e-08  Score=87.26  Aligned_cols=51  Identities=27%  Similarity=0.361  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           4 QHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      .+++.++.+++.++.++|. .||+||||||+||+++ ++.++|+|||.+....
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         114 EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEEECccccccc
Confidence            4678899999999999999 9999999999999999 8999999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=98.45  E-value=2.4e-07  Score=84.83  Aligned_cols=89  Identities=20%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCc-hhhhHhhhcchhhhhhh-ccccCCCCCCC
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA-KVGEKIEKCVNVIHAIG-NAGTPINQNST  337 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~-~~~e~i~~~~~~leafg-na~t~~n~nss  337 (488)
                      +|+........++ ...+++|+..|++|+|||.+..--.     ...|-+ ..-+.+.+.....+++. +|.|.+|++||
T Consensus         8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-----~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SS   81 (186)
T cd01363           8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-----EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSS   81 (186)
T ss_pred             HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-----CCCCcchHHHHHHHHHHhhccccccccccCCCCccC
Confidence            7887777777776 4689999999999999986643110     122322 12223667778889999 99999999999


Q ss_pred             ccceeEEEEECCCCcee
Q psy9090         338 RHVLYMQVTFGSSGKLS  354 (488)
Q Consensus       338 rfgk~~~~~~~~~~~~~  354 (488)
                      |+..+++|++.......
T Consensus        82 RsH~i~~i~v~~~~~~~   98 (186)
T cd01363          82 RSHSVFRIHFGGKNALA   98 (186)
T ss_pred             cccEEEEEEEEEeecCC
Confidence            99999999997655433

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>KOG1243|consensus

Probab=98.43  E-value=1.2e-06  Score=91.73  Aligned_cols=98  Identities=22%  Similarity=0.373  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHH-HCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH-~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +...++..+.||+.||.||| +++++|++|.-+.|+++..|++||++|.++..............---.|..|+.+..  
T Consensus       102 ~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~--  179 (690)
T KOG1243|consen  102 GKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDP--  179 (690)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCc--
Confidence            35678899999999999997 678999999999999999999999999887554332211111222234666765532  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGK  106 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~  106 (488)
                           -....|.|-|||++++++.|.
T Consensus       180 -----s~~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  180 -----SEWSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             -----cccchhhhhHHHHHHHHhCcc
Confidence                 124579999999999999993

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.39  E-value=4.7e-07  Score=83.65  Aligned_cols=46  Identities=33%  Similarity=0.555  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccc
Q psy9090           8 FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET   54 (488)
Q Consensus         8 ~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~   54 (488)
                      .++.|++.+|.+||+.|++|||++|.||+++ ++.++++|||++...
T Consensus        94 ~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        94 ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            6899999999999999999999999999999 889999999988653

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.37  E-value=5.8e-07  Score=83.83  Aligned_cols=48  Identities=33%  Similarity=0.474  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      ....++.+++.+|.+||+.|++|||++|.|||++ ++.++|+|||.+..
T Consensus        96 ~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         96 EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            4568899999999999999999999999999999 78999999998764

>KOG0601|consensus

Probab=98.34  E-value=3.4e-07  Score=94.53  Aligned_cols=154  Identities=21%  Similarity=0.242  Sum_probs=111.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-CcEEEEecCCccccccccCccccccCCCcccc-chhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFDKKKTFLGSPSWMA-PEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~a-PE~l~~   78 (488)
                      |.+...+.+..|++.++.++|+..++|+|+||+||++..+ +..++.|||.++...-   ......+...+.| +|++..
T Consensus       363 ~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~r~~p~~~~~~e  439 (524)
T KOG0601|consen  363 LDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAF---SSGVFHHIDRLYPIAEILLE  439 (524)
T ss_pred             cCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccccce---ecccccccccccccchhhcc
Confidence            4567788999999999999999999999999999999987 6778999998865221   1122233344442 555543


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ...+..+.|++|||.-+.+..++.+.-....   ....+..+..+   .....+.++..+.+.++.+++..||++.
T Consensus       440 ----~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~---~~~~i~~~~~p---~~~~~~~~~q~~~kv~~~~~~~~~~l~~  509 (524)
T KOG0601|consen  440 ----DYPHLSKADIFSLGLSVDEAITGSPLSESGV---QSLTIRSGDTP---NLPGLKLQLQVLLKVMINPDRKRRPSAV  509 (524)
T ss_pred             ----ccccccccccccccccccccccCcccCcccc---cceeeeccccc---CCCchHHhhhhhhhhhcCCccccchhhh
Confidence                2567789999999999999998876433322   12222222222   2233447888999999999999999999


Q ss_pred             HHhcCcCCC
Q psy9090         159 ELLEHPFIT  167 (488)
Q Consensus       159 ell~hp~f~  167 (488)
                      ++..|+-|.
T Consensus       510 ~l~~~~~~~  518 (524)
T KOG0601|consen  510 ELSLHSEFY  518 (524)
T ss_pred             hhcccchhh
Confidence            988876554

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.30  E-value=6.6e-07  Score=95.72  Aligned_cols=48  Identities=25%  Similarity=0.494  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccc
Q psy9090           6 IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET   54 (488)
Q Consensus         6 ~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~   54 (488)
                      ...++.|++.+|.+||+.|++||||||+|||+ .++.++|+|||+++..
T Consensus       430 ~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        430 NPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            46789999999999999999999999999999 6789999999998653

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.26  E-value=1.4e-06  Score=80.05  Aligned_cols=54  Identities=26%  Similarity=0.404  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHCCCeecccCCCCEEEccCCcEEEEecCCcccccc
Q psy9090           2 SEQHIAFILKEIITGMVFL-HENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN   56 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~L-H~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~   56 (488)
                      +++++..+..|++.+|..| |+.|+||+||+|.||++. ++.+.++|||.+....+
T Consensus       122 ~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         122 NDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEE-CCcEEEEECCCceeCCC
Confidence            3456778889999999998 899999999999999997 57899999998765543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0027|consensus

Probab=98.10  E-value=1.1e-07  Score=84.02  Aligned_cols=100  Identities=12%  Similarity=0.150  Sum_probs=81.4

Q ss_pred             CcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC--------hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCC
Q psy9090         219 NHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE--------PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAG  289 (488)
Q Consensus       219 ~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~--------ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgag  289 (488)
                      .....+.+++..+|+++.+.|+..+|...+.........        -.+|.++|.+++|+|+..+++.++.+ |+.-  
T Consensus        41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--  118 (151)
T KOG0027|consen   41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--  118 (151)
T ss_pred             CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--
Confidence            444566777889999999999999999877654332221        12999999999999999999999965 6522  


Q ss_pred             chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         290 KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       290 kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ..+.++.|++.++.++||.++|++|+.+|..
T Consensus       119 ~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~  149 (151)
T KOG0027|consen  119 TDEECKEMIREVDVDGDGKVNFEEFVKMMSG  149 (151)
T ss_pred             CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence            2789999999999999999999999999864

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.04  E-value=7.4e-06  Score=71.10  Aligned_cols=50  Identities=20%  Similarity=0.275  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHC---CCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090           4 QHIAFILKEIITGMVFLHEN---HVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      .....++.+++.+|++||..   +++|+|++|.||+++..+.++++|||.+..
T Consensus        86 ~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          86 EEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            45678899999999999985   699999999999999989999999998753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=98.00  E-value=3.1e-07  Score=80.36  Aligned_cols=114  Identities=12%  Similarity=0.111  Sum_probs=88.9

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh-h---hHHHHHHHHHHHHhcCC
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP-H---IYAVADSAYQDMMHHEE  276 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p-h---~f~~~d~~~~~~~~~~~  276 (488)
                      .++...+..-++ -+.......++..++..+|. +...+++++|+.++........++ .   +|+++|++.+|+|+.++
T Consensus        36 ~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~e  113 (160)
T COG5126          36 LIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGE  113 (160)
T ss_pred             CCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHH
Confidence            344444444444 45566667788888888888 778899999999886554333222 2   99999999999999999


Q ss_pred             CcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         277 AQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       277 ~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +..|+-+ ||  ..-.|.+..|++.++.+++|.++|++|+..+
T Consensus       114 L~~vl~~lge--~~~deev~~ll~~~d~d~dG~i~~~eF~~~~  154 (160)
T COG5126         114 LRRVLKSLGE--RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI  154 (160)
T ss_pred             HHHHHHhhcc--cCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence            9999865 56  2248999999999999999999999999865

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.86  E-value=2.3e-05  Score=70.18  Aligned_cols=46  Identities=28%  Similarity=0.381  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHCCC-----eecccCCCCEEEccCCcEEEEecCCccc
Q psy9090           7 AFILKEIITGMVFLHENHV-----IHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~gi-----vHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      ..++.+++.+|+.||+.++     +|+|++|.||+++ ++.++++||+.+..
T Consensus        86 ~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          86 PENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            4567899999999999985     9999999999999 67899999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.81  E-value=3.4e-05  Score=74.68  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-------CCcEEEEecCCcc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-------DGEVKIVDFGLSR   52 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-------~~~vkL~Dfg~a~   52 (488)
                      +.....++.+++..+.-||..||+|+|++|.|||++.       ++.+.|+||+.+.
T Consensus       137 ~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        137 PRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            3466789999999999999999999999999999975       4679999999774

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.80  E-value=3.2e-05  Score=72.05  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRE   53 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~   53 (488)
                      +......++.++...+.-||.+||+|+|++|.|||++.++   .+.++||+.++.
T Consensus       116 ~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  116 DPSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             chhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            3566788999999999999999999999999999999887   799999987653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.76  E-value=4.2e-05  Score=68.51  Aligned_cols=45  Identities=31%  Similarity=0.485  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090           8 FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus         8 ~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      .+++.+-.-+.-||..||||+||.++||++...+ +.++|||++..
T Consensus        96 ~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          96 DLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             HHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            4778888889999999999999999999998654 99999999864

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.63  E-value=8.3e-05  Score=77.33  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=40.8

Q ss_pred             HHHHHHHH-HHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           8 FILKEIIT-GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         8 ~i~~qil~-aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      .++.+++. .+..+|..|++|+|+||.||+++.+|.++++|||++....
T Consensus       260 ~ia~~~~~~~l~ql~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       260 ALAENLARSFLNQVLRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHHHHHHHHHHHHHhCCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            45556655 4788999999999999999999999999999999986543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.58  E-value=6.6e-05  Score=68.63  Aligned_cols=51  Identities=29%  Similarity=0.559  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHH-HHHCCCeecccCCCCEEEccCCcEEEEecCCccccc
Q psy9090           4 QHIAFILKEIITGMVF-LHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA   55 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~-LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~   55 (488)
                      ++...++.+++..+.. +|..||+|+||++.|||++.+ .+.++|||.+....
T Consensus       106 ~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  106 EEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             STHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEEEEecCcceecC
Confidence            3567788899885555 689999999999999999876 89999999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=97.47  E-value=6.5e-06  Score=65.35  Aligned_cols=63  Identities=14%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             hhHHHHHH-HHHHHHhcCCCcEEEEc--ccccCCch-hhHHHHHHHHHHhcCCCchhhhHhhhcchhhh
Q psy9090         259 HIYAVADS-AYQDMMHHEEAQHIVLA--GETLAGKT-TSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIH  323 (488)
Q Consensus       259 h~f~~~d~-~~~~~~~~~~~q~i~~s--gesgagkt-e~~k~i~~~~~~~~~g~~~~~e~i~~~~~~le  323 (488)
                      .+|.++|+ +.+|.|+..+++.++-+  |+-  -++ +.++.||+.+|.++||.|+|+||+.+|..+.=
T Consensus        12 ~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~   78 (89)
T cd05022          12 SNFHKASVKGGKESLTASEFQELLTQQLPHL--LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK   78 (89)
T ss_pred             HHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence            38999999 99999999999998854  431  124 78999999999999999999999999887643

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>KOG3087|consensus

Probab=97.47  E-value=0.00021  Score=63.83  Aligned_cols=48  Identities=42%  Similarity=0.595  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCcccc
Q psy9090           7 AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET   54 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~   54 (488)
                      ..++++|-+.|.-||.++|||+||..+||++..++.   +.++|||++...
T Consensus       116 ~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  116 AELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             HHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            678889999999999999999999999999976653   589999997543

>KOG3741|consensus

Probab=97.43  E-value=0.0011  Score=68.04  Aligned_cols=130  Identities=15%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++|+.+|.|+.|+..||.++|+.|+..+-|.|.+||++.+.+++|...|.........       +       +.+.+  
T Consensus       390 ~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~-------~-------~~le~--  453 (655)
T KOG3741|consen  390 APEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP-------T-------EPLES--  453 (655)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccceeeecCCC-------C-------cchhH--
Confidence            4789999999999999999999999999999999999998888888777654433221       0       11211  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCC-CCCChHHH-HHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPF-EDMHPTRA-LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf-~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                            ..+-|.-.||.++..|.||..-- ........ +..+          ...+|.+++++|.-+...++.+ -++.
T Consensus       454 ------~Qq~D~~~lG~ll~aLAt~~~ns~~~d~~~~s~~~~I----------~~~yS~D~rn~v~yl~s~~~~~-ksI~  516 (655)
T KOG3741|consen  454 ------QQQNDLRDLGLLLLALATGTENSNRTDSTQSSHLTRI----------TTTYSTDLRNVVEYLESLNFRE-KSIQ  516 (655)
T ss_pred             ------HhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHh----------hhhhhHHHHHHHHHHHhcCccc-ccHH
Confidence                  13568889999999999996431 11111111 1111          2457899999999999998876 7888


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++.+
T Consensus       517 ~llp~  521 (655)
T KOG3741|consen  517 DLLPM  521 (655)
T ss_pred             HHHHH
Confidence            88764

>PRK09902 hypothetical protein; Provisional

Probab=97.08  E-value=0.00099  Score=61.62  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc--EEEEecCCccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRE   53 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~--vkL~Dfg~a~~   53 (488)
                      +..-..++.++...++-||+.|+.|+|+.+.||+++.+|.  ++++||.-++.
T Consensus       127 ~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        127 DEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            4455789999999999999999999999999999987777  99999976543

>KOG1035|consensus

Probab=97.06  E-value=0.0017  Score=72.48  Aligned_cols=153  Identities=22%  Similarity=0.363  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCC---CEEEccCCcEEEE--ecCCccccccccCccccccCCCccccchhh
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGS---NVLLTKDGEVKIV--DFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~---NILl~~~~~vkL~--Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +-+.++.+..++++||.|+|+....|.-+...   +.-.+..+.+...  ||+.++..... ........+..+.+||..
T Consensus       284 ~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~-~~~~~~~~~~~~~~~e~~  362 (1351)
T KOG1035|consen  284 PLETLRILHQKLLEGLAYLHSLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDN-EKSFSDLLAEIRNADEDL  362 (1351)
T ss_pred             CHHHHHHHHHHHhhhHHHHHHhccceeEEecccccccccCccceeecchhhhcccccCCCc-ccchhhcCcccccccccc
Confidence            45678889999999999999997777766555   3444555666666  88877665443 222333445667788877


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      ...   ........|+|++|..+..+..|..+-....   .....+         +........+++.+|+..++++|++
T Consensus       363 ~~~---~~~~~r~~dL~~lgll~~~~~~~~~i~~~~~---~~~~~l---------~~~~~~~~~d~~~~~~~~~~~~Rl~  427 (1351)
T KOG1035|consen  363 KEN---TAKKSRLTDLWCLGLLLLQLSQGEDISEKSA---VPVSLL---------DVLSTSELLDALPKCLDEDSEERLS  427 (1351)
T ss_pred             ccc---cchhhhhhHHHHHHHHHhhhhhcCccccccc---chhhhh---------ccccchhhhhhhhhhcchhhhhccc
Confidence            541   1222344799999999999888765432111   111111         1111226778999999999999999


Q ss_pred             HHHHhcCcCCCCCC
Q psy9090         157 MSELLEHPFITSLP  170 (488)
Q Consensus       157 ~~ell~hp~f~~~~  170 (488)
                      +.+++.|+|.+.-.
T Consensus       428 ~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  428 ALELLTHPFLRFPT  441 (1351)
T ss_pred             hhhhhhchhccccc
Confidence            99999999987543

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.05  E-value=0.00042  Score=73.36  Aligned_cols=36  Identities=19%  Similarity=0.421  Sum_probs=31.6

Q ss_pred             HHHCCCeecccCCCCEEEccCC----cEEEEecCCccccc
Q psy9090          20 LHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETA   55 (488)
Q Consensus        20 LH~~givHrDlkp~NILl~~~~----~vkL~Dfg~a~~~~   55 (488)
                      +...|++|+|+||.||+++.+|    .++++|||++....
T Consensus       276 if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        276 VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            4469999999999999999888    99999999986553

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=97.03  E-value=5.6e-05  Score=60.79  Aligned_cols=65  Identities=8%  Similarity=0.067  Sum_probs=51.4

Q ss_pred             hHHHHH-HHHHH-HHhcCCCcEEEEc--cc--ccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVAD-SAYQD-MMHHEEAQHIVLA--GE--TLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d-~~~~~-~~~~~~~q~i~~s--ge--sgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|..+| +++.| .|+..+++.++-.  |+  ++....+.++.||+.+|.++||.|+|+||+.++.++.=|
T Consensus        15 ~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~   85 (93)
T cd05026          15 IFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA   85 (93)
T ss_pred             HHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence            799888 78888 5999999987722  21  122235689999999999999999999999999887543

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=96.95  E-value=0.0013  Score=61.13  Aligned_cols=43  Identities=23%  Similarity=0.428  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090           9 ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus         9 i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      +..+|.+++.-||+.|+.|+|.+|.|++++.+ .++++||+..+
T Consensus       140 ~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~-~i~iID~~~k~  182 (229)
T PF06176_consen  140 LAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNN-GIRIIDTQGKR  182 (229)
T ss_pred             HHHHHHHHHHHHHHcCCccCCCCcCcEEEECC-cEEEEECcccc
Confidence            44678889999999999999999999999854 59999997643

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B

Probab=96.66  E-value=0.00016  Score=57.46  Aligned_cols=67  Identities=12%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             hhHHHHH-HHHHH-HHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhh
Q psy9090         259 HIYAVAD-SAYQD-MMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI  325 (488)
Q Consensus       259 h~f~~~d-~~~~~-~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leaf  325 (488)
                      .+|.++| +++.| +|+..+++.++-+  +. .|.-. .+.++.+|+.+|.+++|.++|+||+.++..+.=|.
T Consensus        12 ~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~   84 (88)
T cd05027          12 DVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTAC   84 (88)
T ss_pred             HHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence            3899998 79999 6999999998833  00 22212 45599999999999999999999998887765443

S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i

>KOG0576|consensus

Probab=96.63  E-value=0.00054  Score=71.84  Aligned_cols=153  Identities=29%  Similarity=0.456  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccCCC
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVD   84 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~   84 (488)
                      +...+.+.-+.+++++|+.-=+|+|    ||+..+ +..++.+|+......... ...+..+++.++|||+...     .
T Consensus       337 ~~~~~~r~et~~l~~l~~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~-~~~t~~~~~~~~~pev~~~-----~  405 (829)
T KOG0576|consen  337 QFAYPLRKETRPLAELHSSYKVHRD----NILGSE-EEVKLLDFAVPPQLTRTM-KPRTAIGTPEPLAPEVIQE-----N  405 (829)
T ss_pred             hhhhhhhhhcccccccccccccCcc----cccccc-cccccccccCCcccCccc-ccccCCCCCCCCCchhhcc-----c
Confidence            4456667777889999988778888    776654 789999999887665542 4567789999999998876     6


Q ss_pred             CCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CCCCCCCCCcCHHHH-HHHHHhcccCCCCCCCHHHHhc
Q psy9090          85 GYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PPGLYRASNWSQHYV-DFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus        85 ~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~-~li~~~L~~dP~~Rps~~ell~  162 (488)
                      .+..+.|.|++|+-..++.-|.+|-....  .....+-..+ .+.+.....|++... ++...|+..-|..|+..-.++-
T Consensus       406 ~~~~~p~~~~~~~~~~~~ap~~pPr~~P~--~~~~~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~~g~P~~pkv~mgacf  483 (829)
T KOG0576|consen  406 TIDGCPDSGSLAVSAIQMAPGLPPRSSPP--AVLPMIGNGPNSPMLTDKSAWSPVFHRDFPAPCLNGLPPTPKVHMGACF  483 (829)
T ss_pred             ccccCCCccCCCcchhhcCCCCCCCCCCc--cccCCCCCCCCccccchhhhcCcccccCCcccccCCCCCCCcchhhHHH
Confidence            68889999999988788888887765421  1111110111 011111123433333 3778899999999999999999


Q ss_pred             CcCCCCCC
Q psy9090         163 HPFITSLP  170 (488)
Q Consensus       163 hp~f~~~~  170 (488)
                      |.+|...+
T Consensus       484 sKvfngCp  491 (829)
T KOG0576|consen  484 SKVFNGCP  491 (829)
T ss_pred             HHHhccCc
Confidence            99997754

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11

Probab=96.40  E-value=0.00022  Score=56.72  Aligned_cols=61  Identities=13%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             hHHH-HHHHHHH-HHhcCCCcEEEEcccc-----cCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAV-ADSAYQD-MMHHEEAQHIVLAGET-----LAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~-~d~~~~~-~~~~~~~q~i~~sges-----gagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|.. +|+++++ .|+..|.+.++  +..     +..+ ...++.||+.+|.++||.|+|+||+.++..+.
T Consensus        14 ~F~~y~~~dg~~~~Ls~~Elk~ll--~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~   82 (89)
T cd05023          14 VFQKYAGKDGDSYQLSKTEFLSFM--NTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA   82 (89)
T ss_pred             HHHHHhccCCCcCeECHHHHHHHH--HHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence            6776 7777765 78888888777  322     2223 57899999999999999999999999887764

S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=96.37  E-value=0.0063  Score=58.01  Aligned_cols=51  Identities=24%  Similarity=0.392  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      .+.+..++..|++-+.-+-..|+||+|+++-||+++.+|.+.++||--+..
T Consensus       201 ~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~  251 (304)
T COG0478         201 VENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDWPQAVP  251 (304)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCCEEEEeCccccc
Confidence            345667777788877777799999999999999999999999999965443

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=96.32  E-value=0.0019  Score=39.62  Aligned_cols=28  Identities=21%  Similarity=0.167  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         293 SLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       293 ~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +++.+++.+|.|+||.|+++||+.+|..
T Consensus         1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~   28 (29)
T PF00036_consen    1 ELKEAFREFDKDGDGKIDFEEFKEMMKK   28 (29)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence            3789999999999999999999998764

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>KOG0044|consensus

Probab=96.13  E-value=0.0002  Score=65.06  Aligned_cols=122  Identities=15%  Similarity=0.164  Sum_probs=87.8

Q ss_pred             HHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChh---hHHHHHHHHHHHHhcCCCcEEEEc
Q psy9090         207 IVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPH---IYAVADSAYQDMMHHEEAQHIVLA  283 (488)
Q Consensus       207 l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph---~f~~~d~~~~~~~~~~~~q~i~~s  283 (488)
                      ...-+..-+.......|..-++...|-++++.|++.||+.++.-..+....+.   +|++.|.++.|.|+..|.=.|+-+
T Consensus        49 F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~  128 (193)
T KOG0044|consen   49 FREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA  128 (193)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence            33334444445566667777888999999999999999988865555544433   899999999998888764332211


Q ss_pred             -----cc-----ccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhcc
Q psy9090         284 -----GE-----TLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGNA  328 (488)
Q Consensus       284 -----ge-----sgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgna  328 (488)
                           |.     -.-+.-+-+..+++.+|.|.||.++++||+..+..   +|++++.-
T Consensus       129 i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~~  186 (193)
T KOG0044|consen  129 IYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQD  186 (193)
T ss_pred             HHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhhc
Confidence                 31     11234566888999999999999999999988764   77777643

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=95.92  E-value=0.015  Score=53.98  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             CCCeecccCCCCEEEcc--CCcEEEEecCCccc
Q psy9090          23 NHVIHRDLRGSNVLLTK--DGEVKIVDFGLSRE   53 (488)
Q Consensus        23 ~givHrDlkp~NILl~~--~~~vkL~Dfg~a~~   53 (488)
                      ..++|+|++|.||+++.  ++.+.++||+.+..
T Consensus       174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             cEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence            35799999999999998  56789999987653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1

Probab=95.83  E-value=0.00086  Score=53.75  Aligned_cols=69  Identities=14%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             hhHHHHH-HHHHHH-HhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhc
Q psy9090         259 HIYAVAD-SAYQDM-MHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGN  327 (488)
Q Consensus       259 h~f~~~d-~~~~~~-~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgn  327 (488)
                      .+|.++| ++++|. |+..+.+.++-.  |+ -|... .+.++.||++++.+++|.+++++|+..+.++.=|=++
T Consensus        13 ~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~   87 (92)
T cd05025          13 NVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN   87 (92)
T ss_pred             HHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence            4999997 999994 999999988831  32 12222 5679999999999999999999999988877655443

S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=95.73  E-value=0.022  Score=53.80  Aligned_cols=52  Identities=23%  Similarity=0.350  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCcccccc
Q psy9090           4 QHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN   56 (488)
Q Consensus         4 ~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~   56 (488)
                      +++..+..++++.+.-|-. .++||+||+.-|||+. ++.+.++|+|-+....+
T Consensus       166 ~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~h  218 (268)
T COG1718         166 EEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DGEPYIIDVSQAVTIDH  218 (268)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CCeEEEEECccccccCC
Confidence            3677888999999988877 9999999999999999 88999999998765543

>PTZ00183 centrin; Provisional

Probab=95.69  E-value=0.00055  Score=60.46  Aligned_cols=96  Identities=8%  Similarity=0.036  Sum_probs=71.4

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC----ChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN----EPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKH  296 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~----~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~  296 (488)
                      ..+..++..+|+++.+.|.+.+|+...........    -.++|+.+|.+..|.++..+...++.. |+  .-+.+.++.
T Consensus        53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l~~~~~~~  130 (158)
T PTZ00183         53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TITDEELQE  130 (158)
T ss_pred             HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHH
Confidence            34556677788888888999999876533211111    123899999999999998888877632 33  124778999


Q ss_pred             HHHHHHHhcCCCchhhhHhhhcc
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++..++.+++|.|++++|+..+.
T Consensus       131 ~~~~~d~~~~g~i~~~ef~~~~~  153 (158)
T PTZ00183        131 MIDEADRNGDGEISEEEFYRIMK  153 (158)
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHh
Confidence            99999999999999999987664

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=95.62  E-value=0.0011  Score=52.70  Aligned_cols=63  Identities=10%  Similarity=0.110  Sum_probs=48.0

Q ss_pred             hHHHHHH-HH-HHHHhcCCCcEEEEc----ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADS-AY-QDMMHHEEAQHIVLA----GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~-~~-~~~~~~~~~q~i~~s----gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|.-++. ++ .|.|+..+++.++-.    |+.  -..+.+..||+.+|.+++|.++|+||+..+..+.=|
T Consensus        15 ~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k--~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~   83 (88)
T cd05029          15 IFHKYSGREGDKNTLSKKELKELIQKELTIGSK--LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI   83 (88)
T ss_pred             HHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence            5666665 55 568888888887731    441  126789999999999999999999999998877544

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>PTZ00184 calmodulin; Provisional

Probab=95.55  E-value=0.00076  Score=58.76  Aligned_cols=95  Identities=9%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCC----CCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSR----SDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHL  297 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~----~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i  297 (488)
                      .+..++..+|.++.+.+++.+|+........    ...-.++|..+|.+.+|.++..+...++  ...|.+ ..+.++.+
T Consensus        48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~~  125 (149)
T PTZ00184         48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVM--TNLGEKLTDEEVDEM  125 (149)
T ss_pred             HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHH--HHHCCCCCHHHHHHH
Confidence            4555667778888888999999976542211    1122359999999999998888877665  222322 36778899


Q ss_pred             HHHHHHhcCCCchhhhHhhhcc
Q psy9090         298 LKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       298 ~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++.++.+++|.++++||+..++
T Consensus       126 ~~~~d~~~~g~i~~~ef~~~~~  147 (149)
T PTZ00184        126 IREADVDGDGQINYEEFVKMMM  147 (149)
T ss_pred             HHhcCCCCCCcCcHHHHHHHHh
Confidence            9999999999999999997764

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=95.53  E-value=0.001  Score=49.41  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|+.+|.+.+|.++..+.+.++  ...|. ..+.++.|++.++.+++|.++++||+..+..+.
T Consensus         3 ~~F~~~D~~~~G~i~~~el~~~l--~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~   63 (67)
T cd00052           3 QIFRSLDPDGDGLISGDEARPFL--GKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA   63 (67)
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHH--HHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence            37888888888888888887766  22333 456789999999999999999999998876543

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=95.48  E-value=0.00045  Score=51.44  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-----chhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-----KTTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-----kte~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      .+|..+|.+.+|.|+..+.+.++..  .|..     ..+.+..+++.+|.+++|.++++||+.+|
T Consensus         4 ~~F~~~D~d~~G~i~~~el~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~   66 (66)
T PF13499_consen    4 EAFKKFDKDGDGYISKEELRRALKH--LGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM   66 (66)
T ss_dssp             HHHHHHSTTSSSEEEHHHHHHHHHH--TTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred             HHHHHHcCCccCCCCHHHHHHHHHH--hcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence            3788999999999998888877732  2211     14556677999999999999999999865

...

>KOG0028|consensus

Probab=95.30  E-value=0.00055  Score=59.02  Aligned_cols=96  Identities=9%  Similarity=0.058  Sum_probs=74.9

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChh-----hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPH-----IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLK  295 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph-----~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k  295 (488)
                      +.+..++..+|-.+.+.|.+++|...+..+..... +|     +|.++|-+.+|.|+.+++..+.  -|-|--- .+...
T Consensus        69 ~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t~eEi~~afrl~D~D~~Gkis~~~lkrva--keLgenltD~El~  145 (172)
T KOG0028|consen   69 EEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-TKEEIKKAFRLFDDDKTGKISQRNLKRVA--KELGENLTDEELM  145 (172)
T ss_pred             HHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-cHHHHHHHHHcccccCCCCcCHHHHHHHH--HHhCccccHHHHH
Confidence            44556677777788888999999987665533333 55     9999999999999998888666  3433222 67899


Q ss_pred             HHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         296 HLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       296 ~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .||.+++.+++|.++-+||+..|..
T Consensus       146 eMIeEAd~d~dgevneeEF~~imk~  170 (172)
T KOG0028|consen  146 EMIEEADRDGDGEVNEEEFIRIMKK  170 (172)
T ss_pred             HHHHHhcccccccccHHHHHHHHhc
Confidence            9999999999999999999988753

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10

Probab=95.23  E-value=0.0017  Score=52.21  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             hhHHHHHH-HH-HHHHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADS-AY-QDMMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~-~~-~~~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|.++|. ++ +|.|+..+.+.++-+  |+ -|... .+.++.|++.++.+++|.|+++||+.++..
T Consensus        12 ~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~   79 (94)
T cd05031          12 LTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG   79 (94)
T ss_pred             HHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            38999997 87 699999999988732  22 23233 567999999999999999999999977654

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>KOG1826|consensus

Probab=95.22  E-value=0.012  Score=67.81  Aligned_cols=143  Identities=13%  Similarity=0.012  Sum_probs=95.9

Q ss_pred             HHHHHHHHHCC-----CeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccCCCCCCC
Q psy9090          14 ITGMVFLHENH-----VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN   88 (488)
Q Consensus        14 l~aL~~LH~~g-----ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~   88 (488)
                      +....-+|+..     .+|+++|+-|.+|..+..+|++++|+.+...+.........+++.|+.|++...     -.++.
T Consensus      1345 vl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~-----ik~t~ 1419 (2724)
T KOG1826|consen 1345 VLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNE-----IKFTK 1419 (2724)
T ss_pred             HhccchhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHH-----Hhhhh
Confidence            66666666532     789999999999999999999999999844444445566778899999998754     45677


Q ss_pred             ccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC---CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcC
Q psy9090          89 RIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG---LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF  165 (488)
Q Consensus        89 ~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~  165 (488)
                      ++|+|..|+.+|....|-.+|..     .++...++....   ...+.-.|.+.-.....+|-..-..||.-...+..+.
T Consensus      1420 rsdilr~s~~ly~rs~~n~~fi~-----flq~~Lkgiidn~tf~sIe~l~pgdaNve~~~~Ll~K~~~rp~q~isls~d~ 1494 (2724)
T KOG1826|consen 1420 RSDILRRSLSLYLRSDGNAYFIF-----FLQPALKGIIDNHTFFSIEKLKPGDANVEALHRLLWKYMERPGQYISLSRDH 1494 (2724)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHH-----HHHHHHcCcccccccccccccCCCcccHHHHHHHHHHhhhcchhhhhccccc
Confidence            79999999999999888877632     222223222111   1111122334444445555555667887777666555


Q ss_pred             C
Q psy9090         166 I  166 (488)
Q Consensus       166 f  166 (488)
                      |
T Consensus      1495 ~ 1495 (2724)
T KOG1826|consen 1495 F 1495 (2724)
T ss_pred             c
Confidence            5

>KOG0034|consensus

Probab=95.05  E-value=0.0014  Score=59.42  Aligned_cols=91  Identities=12%  Similarity=0.056  Sum_probs=61.7

Q ss_pred             eeeeCCCCCCC-CCCchhhhhccCCCCCCCChh-----hHHHHHHHHHHHHhcCCCcEEEEc--ccccC----CchhhHH
Q psy9090         228 LLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPH-----IYAVADSAYQDMMHHEEAQHIVLA--GETLA----GKTTSLK  295 (488)
Q Consensus       228 l~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph-----~f~~~d~~~~~~~~~~~~q~i~~s--gesga----gkte~~k  295 (488)
                      +...++.+.+. +++.+|+.....-.... +++     +|++.|.+.+|.|+..+.+.|+..  |++..    ....-+.
T Consensus        72 ~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~-~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d  150 (187)
T KOG0034|consen   72 IDRFDTDGNGDPVDFEEFVRLLSVFSPKA-SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVD  150 (187)
T ss_pred             HHHHhccCCCCccCHHHHHHHHhhhcCCc-cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            33344444444 88888886543221111 222     999999999999999999987754  54332    1133466


Q ss_pred             HHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         296 HLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       296 ~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|.++|.++||.|+++||-..+-
T Consensus       151 ~t~~e~D~d~DG~IsfeEf~~~v~  174 (187)
T KOG0034|consen  151 KTFEEADTDGDGKISFEEFCKVVE  174 (187)
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHH
Confidence            678899999999999999976543

>KOG0027|consensus

Probab=95.00  E-value=0.0021  Score=56.71  Aligned_cols=69  Identities=13%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAG  329 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~  329 (488)
                      .+|+.+|++..|.|+..++..++-+  .|... .+.++.++++++.+++|.|++++|+..|.+.++......
T Consensus        12 ~~F~~fD~d~~G~i~~~el~~~lr~--lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~   81 (151)
T KOG0027|consen   12 EAFQLFDKDGDGKISVEELGAVLRS--LGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE   81 (151)
T ss_pred             HHHHHHCCCCCCcccHHHHHHHHHH--cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence            3999999999999999999988833  33333 677999999999999999999999999887776555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	488
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		2e-47
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		8e-43
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		2e-42
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		3e-42
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		3e-42
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		5e-42
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-41
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		2e-41
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		9e-41
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-40
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		3e-40
3a7f_A	303	Human Mst3 Kinase Length = 303		6e-40
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		6e-40
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		6e-40
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-35
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		3e-35
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-33
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		7e-33
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-32
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		1e-32
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-32
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		4e-32
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-31
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		4e-31
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		2e-30
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		2e-30
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		3e-28
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		3e-28
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		3e-28
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		3e-28
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		4e-28
4fie_A	423	Full-Length Human Pak4 Length = 423		5e-28
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		4e-27
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		4e-26
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		6e-26
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		2e-25
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		2e-25
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		3e-25
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		3e-24
1b7t_A	835	Myosin Digested By Papain Length = 835		3e-24
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		3e-24
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		3e-24
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		3e-24
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		3e-24
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		4e-24
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		5e-24
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		5e-24
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		5e-24
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		5e-24
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		5e-24
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		5e-24
2y0r_X	758	Structural Basis For The Allosteric Interference Of		5e-24
2y9e_X	758	Structural Basis For The Allosteric Interference Of		5e-24
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		5e-24
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		5e-24
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		6e-24
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		6e-24
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		6e-24
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		9e-24
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		1e-23
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-23
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		1e-23
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		1e-23
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-23
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		2e-23
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		2e-23
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		2e-23
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-23
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		3e-23
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		3e-23
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		3e-23
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		3e-23
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		3e-23
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		4e-23
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		4e-23
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		5e-23
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		5e-23
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		6e-23
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		9e-23
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		2e-22
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		2e-22
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		2e-22
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		3e-22
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		5e-22
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		8e-22
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-22
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		8e-22
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		2e-21
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		2e-21
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		3e-21
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		3e-21
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		3e-21
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		3e-21
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		3e-21
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		4e-21
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		5e-21
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		1e-20
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-20
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-20
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		3e-20
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		4e-20
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		4e-20
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-20
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		4e-20
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		4e-20
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		5e-20
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		5e-20
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		5e-20
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		5e-20
2x51_A	789	M6 Delta Insert1 Length = 789		5e-20
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		5e-20
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		5e-20
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		5e-20
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		5e-20
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		6e-20
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		6e-20
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		8e-20
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		8e-20
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-20
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		9e-20
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		9e-20
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		1e-19
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		1e-19
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		1e-19
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-19
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-19
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		1e-19
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		1e-19
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-19
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		2e-19
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		2e-19
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		2e-19
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		2e-19
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		2e-19
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-19
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		3e-19
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		3e-19
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		3e-19
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		3e-19
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		3e-19
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		3e-19
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		3e-19
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		3e-19
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		4e-19
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		4e-19
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		5e-19
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		5e-19
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		5e-19
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		5e-19
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-19
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		7e-19
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		7e-19
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		7e-19
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-19
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-19
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		1e-18
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		1e-18
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		1e-18
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		2e-18
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		2e-18
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		2e-18
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		2e-18
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		3e-18
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		3e-18
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		3e-18
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		3e-18
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		3e-18
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		5e-18
3gni_B	389	Structure Of Strad And Mo25 Length = 389		9e-18
2wtk_B	373	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		1e-17
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		1e-17
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		1e-17
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		1e-17
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-17
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		2e-17
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		2e-17
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-17
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		3e-17
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		3e-17
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		3e-17
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		3e-17
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		4e-17
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		4e-17
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		6e-17
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-17
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		7e-17
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		8e-17
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		8e-17
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-17
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		2e-16
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-16
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-16
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		2e-16
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		2e-16
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		2e-16
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-16
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		2e-16
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-16
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-16
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		2e-16
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-16
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		3e-16
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-16
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-16
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-16
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		4e-16
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		5e-16
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		6e-16
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		6e-16
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		7e-16
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		7e-16
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		9e-16
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		9e-16
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-15
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-15
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-15
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-15
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		1e-15
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-15
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-15
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-15
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-15
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-15
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		1e-15
3soa_A	444	Full-Length Human Camkii Length = 444		1e-15
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-15
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		1e-15
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-15
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-15
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-15
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-15
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-15
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-15
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		2e-15
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		2e-15
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		2e-15
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		3e-15
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		3e-15
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		3e-15
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		3e-15
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		3e-15
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-15
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		3e-15
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		3e-15
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		3e-15
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-15
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		4e-15
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		5e-15
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		5e-15
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-15
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		5e-15
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		5e-15
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		6e-15
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		6e-15
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		7e-15
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		7e-15
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		8e-15
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		1e-14
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-14
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		1e-14
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		1e-14
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		1e-14
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		1e-14
3g51_A	325	Structural Diversity Of The Active Conformation Of		1e-14
2oza_B	366	Structure Of P38alpha Complex Length = 366		1e-14
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		1e-14
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		1e-14
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		1e-14
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		1e-14
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-14
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		1e-14
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		1e-14
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-14
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-14
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-14
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-14
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-14
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		2e-14
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		2e-14
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		2e-14
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-14
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		2e-14
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		2e-14
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		2e-14
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		2e-14
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		2e-14
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		3e-14
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-14
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		3e-14
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-14
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-14
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-14
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		3e-14
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		3e-14
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-14
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		3e-14
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		4e-14
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		4e-14
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		4e-14
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		4e-14
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		4e-14
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		4e-14
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		4e-14
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		4e-14
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		4e-14
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		4e-14
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		4e-14
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		4e-14
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		4e-14
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		4e-14
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		4e-14
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		4e-14
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		4e-14
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		4e-14
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		4e-14
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		4e-14
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		4e-14
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		4e-14
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		4e-14
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		4e-14
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		4e-14
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		4e-14
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		4e-14
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		4e-14
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		4e-14
3kk8_A	284	Camkii Substrate Complex A Length = 284		5e-14
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		5e-14
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		5e-14
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		5e-14
3hec_A	348	P38 In Complex With Imatinib Length = 348		5e-14
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		5e-14
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		5e-14
3kk9_A	282	Camkii Substrate Complex B Length = 282		5e-14
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		5e-14
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		5e-14
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		5e-14
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		5e-14
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		5e-14
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		5e-14
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-14
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		6e-14
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		6e-14
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		6e-14
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		6e-14
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-14
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		7e-14
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		7e-14
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		7e-14
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		7e-14
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		7e-14
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		7e-14
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		7e-14
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		7e-14
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		7e-14
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		7e-14
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		7e-14
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		7e-14
4ae6_A	343	Structure And Function Of The Human Sperm-specific		7e-14
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		7e-14
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		7e-14
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		7e-14
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		8e-14
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		8e-14
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		8e-14
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		8e-14
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		8e-14
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		8e-14
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		8e-14
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		8e-14
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		8e-14
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		8e-14
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		8e-14
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		8e-14
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		8e-14
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		8e-14
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		9e-14
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		9e-14
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		9e-14
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		9e-14
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-13
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		1e-13
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		1e-13
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		1e-13
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		1e-13
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		1e-13
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-13
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-13
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-13
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		1e-13
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		1e-13
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		1e-13
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		1e-13
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		1e-13
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-13
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-13
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-13
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-13
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		2e-13
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-13
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		2e-13
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-13
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-13
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		2e-13
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		2e-13
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		2e-13
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-13
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		2e-13
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		3e-13
2oza_A	356	Structure Of P38alpha Complex Length = 356		3e-13
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-13
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-13
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		3e-13
4ae9_A	343	Structure And Function Of The Human Sperm-specific		3e-13
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		3e-13
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-13
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		3e-13
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-13
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		3e-13
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		3e-13
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		3e-13
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		3e-13
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		3e-13
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		3e-13
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		3e-13
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		3e-13
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		3e-13
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		3e-13
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		3e-13
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		3e-13
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-13
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		3e-13
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		3e-13
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		3e-13
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		3e-13
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		4e-13
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-13
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		4e-13
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-13
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-13
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-13
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		4e-13
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-13
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-13
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		5e-13
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		5e-13
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		5e-13
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		5e-13
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		5e-13
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		5e-13
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		5e-13
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		5e-13
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		6e-13
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		6e-13
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		6e-13
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		6e-13
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		7e-13
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-13
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		8e-13
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		8e-13
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		8e-13
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		9e-13
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		9e-13
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		1e-12
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-12
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-12
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-12
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		2e-12
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-12
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		2e-12
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-12
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-12
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-12
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-12
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		2e-12
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-12
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		2e-12
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		2e-12
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-12
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		3e-12
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		3e-12
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-12
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		3e-12
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		3e-12
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		4e-12
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-12
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		4e-12
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		4e-12
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		4e-12
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		4e-12
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		4e-12
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		4e-12
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		4e-12
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		4e-12
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		4e-12
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		4e-12
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-12
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-12
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		4e-12
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		4e-12
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		4e-12
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		4e-12
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-12
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-12
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-12
2pl0_A	289	Lck Bound To Imatinib Length = 289		5e-12
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		5e-12
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		5e-12
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		5e-12
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		5e-12
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		5e-12
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		5e-12
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		5e-12
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		5e-12
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		5e-12
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		5e-12
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		5e-12
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		6e-12
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		7e-12
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		7e-12
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		8e-12
3b2t_A	311	Structure Of Phosphotransferase Length = 311		8e-12
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		8e-12
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		8e-12
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		8e-12
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		8e-12
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		8e-12
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		8e-12
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-12
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-12
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		8e-12
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		9e-12
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		9e-12
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		9e-12
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		9e-12
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		1e-11
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		1e-11
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-11
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		1e-11
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		1e-11
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-11
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		1e-11
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-11
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		1e-11
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		1e-11
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-11
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		1e-11
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		2e-11
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-11
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		2e-11
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-11
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-11
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		2e-11
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		2e-11
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-11
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		2e-11
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		2e-11
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		2e-11
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		2e-11
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		3e-11
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		3e-11
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		3e-11
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		3e-11
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		3e-11
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		3e-11
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		3e-11
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		3e-11
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		3e-11
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		3e-11
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		3e-11
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		3e-11
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		3e-11
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		3e-11
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		3e-11
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-11
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		3e-11
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		3e-11
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-11
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		3e-11
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		4e-11
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		4e-11
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		4e-11
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		4e-11
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		4e-11
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		4e-11
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		4e-11
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		4e-11
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		4e-11
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		5e-11
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		5e-11
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		5e-11
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		5e-11
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		5e-11
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		5e-11
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		5e-11
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		5e-11
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		6e-11
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		6e-11
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		6e-11
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		6e-11
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-11
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		6e-11
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		6e-11
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		6e-11
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-11
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		6e-11
4exu_A	371	Mapk13, Inactive Form Length = 371		6e-11
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		6e-11
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		8e-11
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		8e-11
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		9e-11
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		9e-11
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		9e-11
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		9e-11
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-10
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		1e-10
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		1e-10
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		1e-10
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-10
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		1e-10
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		1e-10
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-10
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-10
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		1e-10
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		1e-10
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-10
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		1e-10
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-10
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		2e-10
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		2e-10
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-10
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		2e-10
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		2e-10
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-10
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-10
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		2e-10
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-10
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		2e-10
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		2e-10
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		2e-10
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		2e-10
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-10
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		2e-10
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		2e-10
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		2e-10
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-10
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-10
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		3e-10
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-10
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-10
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		3e-10
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		3e-10
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		3e-10
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		3e-10
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		3e-10
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		3e-10
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		3e-10
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		3e-10
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-10
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		3e-10
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-10
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		3e-10
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		3e-10
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-10
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-10
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		3e-10
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-10
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		3e-10
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		3e-10
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		3e-10
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		3e-10
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		3e-10
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		3e-10
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-10
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		3e-10
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-10
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		3e-10
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		3e-10
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		4e-10
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		4e-10
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		4e-10
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		4e-10
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		4e-10
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		4e-10
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		4e-10
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		4e-10
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		4e-10
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		4e-10
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		4e-10
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		4e-10
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		4e-10
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		4e-10
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		4e-10
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		5e-10
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		5e-10
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		5e-10
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-10
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-10
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		7e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		7e-10
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		7e-10
1fvr_A	327	Tie2 Kinase Domain Length = 327		7e-10
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		7e-10
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		8e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		8e-10
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		8e-10
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		9e-10
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		9e-10
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		9e-10
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-09
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		1e-09
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		1e-09
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		1e-09
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		1e-09
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		1e-09
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		1e-09
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		1e-09
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		1e-09
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-09
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		1e-09
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		1e-09
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		2e-09
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		2e-09
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-09
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-09
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-09
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-09
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-09
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		2e-09
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		2e-09
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		2e-09
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		2e-09
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-09
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-09
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-09
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		2e-09
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-09
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-09
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-09
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-09
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-09
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		2e-09
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-09
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		2e-09
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-09
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-09
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-09
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-09
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-09
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-09
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-09
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-09
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		2e-09
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-09
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-09
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-09
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-09
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-09
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		2e-09
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		2e-09
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-09
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-09
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-09
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		2e-09
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		2e-09
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-09
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		2e-09
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-09
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		2e-09
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-09
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-09
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-09
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-09
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-09
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-09
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		2e-09
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		2e-09
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		3e-09
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		3e-09
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		3e-09
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		3e-09
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		3e-09
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		3e-09
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		3e-09
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		3e-09
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		3e-09
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		3e-09
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-09
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		3e-09
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		3e-09
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		3e-09
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		3e-09
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		3e-09
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		3e-09
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-09
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-09
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-09
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		3e-09
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		3e-09
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-09
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		3e-09
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		3e-09
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		3e-09
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-09
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-09
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		4e-09
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		4e-09
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		4e-09
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		4e-09
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		4e-09
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		5e-09
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		5e-09
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		5e-09
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		5e-09
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		5e-09
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		5e-09
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-09
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		6e-09
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		6e-09
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		6e-09
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		6e-09
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		6e-09
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		6e-09
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		7e-09
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		7e-09
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		7e-09
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		7e-09
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		7e-09
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		7e-09
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		7e-09
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		7e-09
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		7e-09
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		7e-09
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		7e-09
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		7e-09
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		7e-09
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		8e-09
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		8e-09
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		9e-09
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		9e-09
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-08
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		1e-08
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		1e-08
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		1e-08
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		1e-08
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-08
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		1e-08
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		1e-08
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		1e-08
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		1e-08
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		1e-08
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		1e-08
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		1e-08
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		1e-08
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		1e-08
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		1e-08
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		1e-08
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		1e-08
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		1e-08
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		1e-08
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-08
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		2e-08
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-08
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		2e-08
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		2e-08
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-08
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-08
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-08
4fl3_A	635	Structural And Biophysical Characterization Of The		3e-08
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-08
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		3e-08
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-08
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		3e-08
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		3e-08
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		4e-08
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		4e-08
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-08
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-08
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		5e-08
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		5e-08
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-08
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		5e-08
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		5e-08
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		5e-08
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		5e-08
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		5e-08
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		5e-08
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		5e-08
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		5e-08
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		5e-08
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-08
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		5e-08
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		5e-08
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		5e-08
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		5e-08
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		6e-08
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		6e-08
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		6e-08
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		6e-08
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		6e-08
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		7e-08
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		7e-08
4alu_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		7e-08
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		7e-08
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		7e-08
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		7e-08
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		7e-08
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		8e-08
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		8e-08
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		8e-08
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		9e-08
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		9e-08
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		1e-07
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		1e-07
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		1e-07
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		1e-07
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-07
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		1e-07
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		1e-07
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		1e-07
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-07
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		1e-07
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		1e-07
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		1e-07
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-07
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		1e-07
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		1e-07
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		1e-07
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		1e-07
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		1e-07
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		2e-07
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		2e-07
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-07
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-07
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-07
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-07
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-07
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-07
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-07
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-07
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-07
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		2e-07
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		2e-07
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-07
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-07
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		2e-07
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		2e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		3e-07
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		3e-07
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		3e-07
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		3e-07
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		3e-07
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-07
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		3e-07
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		3e-07
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		3e-07
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		3e-07
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		4e-07
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		4e-07
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		4e-07
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		4e-07
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		4e-07
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		5e-07
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		5e-07
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		5e-07
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		5e-07
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		5e-07
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		6e-07
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		6e-07
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		6e-07
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		6e-07
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		6e-07
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		7e-07
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		7e-07
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		7e-07
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		7e-07
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		7e-07
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		7e-07
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		8e-07
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		9e-07
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		9e-07
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		1e-06
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		1e-06
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		1e-06
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		1e-06
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		1e-06
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-06
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		1e-06
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-06

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 5/185 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+I +EI+ G+  LH++ VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 126 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 185
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD + D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 186 RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL 245
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I RNP P L ++  WS+ +  FI  CL KN   RP   +L++HPFI   P        V 
Sbjct: 246 IPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQPNE----RQVR 300
Query: 181 CQYKD 185
            Q KD
Sbjct: 301 IQLKD 305

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score =  171 bits (433), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 113/167 (67%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + K+ +  + +LH+N +IHRDL+  N+L T DG++K+ DFG+S +   T  +
Sbjct: 132 LTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR 191
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + DVW+LGIT IE+ + +PP  +++P R L +
Sbjct: 192 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLK 251
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I ++ PP L + S WS ++ DF+ +CLEKN + R   S+LL+HPF+T
Sbjct: 252 IAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVT 298

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + ++++  + FLH   +IHRDL+  NVL+T +G++++ DFG+S +   T  K
Sbjct: 114 LTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQK 173
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + D+W+LGIT IE+   +PP  +++P R L +
Sbjct: 174 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLK 233
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           I ++ PP L   S WS  + DF+   L+KNPE RP  ++LLEHPF++S+  N
Sbjct: 234 IAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSN 285

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 113/172 (65%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + ++++  + FLH   +IHRDL+  NVL+T +G++++ DFG+S +   T  K
Sbjct: 106 LTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQK 165
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + D+W+LGIT IE+   +PP  +++P R L +
Sbjct: 166 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLK 225
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           I ++ PP L   S WS  + DF+   L+KNPE RP  ++LLEHPF++S+  N
Sbjct: 226 IAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSN 277

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 112/167 (67%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + K+ +  + +LH+N +IHRDL+  N+L T DG++K+ DFG+S +      +
Sbjct: 132 LTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQR 191
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + DVW+LGIT IE+ + +PP  +++P R L +
Sbjct: 192 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLK 251
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I ++ PP L + S WS ++ DF+ +CLEKN + R   S+LL+HPF+T
Sbjct: 252 IAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVT 298

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score =  168 bits (426), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 111/167 (66%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + K+ +  + +LH+N +IHRDL+  N+L T DG++K+ DFG+S +      +
Sbjct: 132 LTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQR 191
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +  F+G+P WMAPE++ C   +   YD + DVW+LGIT IE+ + +PP  +++P R L +
Sbjct: 192 RDXFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLK 251
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I ++ PP L + S WS ++ DF+ +CLEKN + R   S+LL+HPF+T
Sbjct: 252 IAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVT 298

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 120/193 (62%), Gaps = 9/193 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  IA IL+  + G+ +LH    IHRD++  N+LL  +G  K+ DFG++ +  +   K
Sbjct: 122 LTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAK 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +   +G+P WMAPE++    +E+ GY+   D+W+LGITAIE+ +GKPP+ D+HP RA+F 
Sbjct: 182 RNXVIGTPFWMAPEVI----QEI-GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFM 236
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE----NDLHL 176
           I  NPPP   +   WS ++ DF+ +CL K+PE R   ++LL+HPF+ S        DL  
Sbjct: 237 IPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKGVSILRDLIN 296
Query: 177 STVNCQYKDQELQ 189
             ++ + K QE Q
Sbjct: 297 EAMDVKLKRQESQ 309

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score =  164 bits (415), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 119/182 (65%), Gaps = 7/182 (3%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E  IA +LKEI+ G+ +LH    IHRD++ +NVLL++ G+VK+ DFG++ +  +T  K+ 
Sbjct: 119 EFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN 178
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           TF+G+P WMAPE++     +   YD++ D+W+LGITAIEL  G+PP  DMHP R LF I 
Sbjct: 179 TFVGTPFWMAPEVI-----QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIP 233
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQ 182
           +N PP L    ++++ + +FI  CL K+P  RP   ELL+H FI    +   +L+ +  +
Sbjct: 234 KNNPPTL--VGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFIVKNSKKTSYLTELIDR 291
Query: 183 YK 184
           +K
Sbjct: 292 FK 293

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 7/192 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA IL+EI+ G+ +LH    IHRD++ +NVLL++ GEVK+ DFG++ +  +T  K
Sbjct: 101 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 160
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE+++        YD++ D+W+LGITAIEL  G+PP  ++HP + LF 
Sbjct: 161 RNTFVGTPFWMAPEVIKQ-----SAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFL 215
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I +N PP L    N+S+   +F+  CL K P  RP   ELL+H FI    +   +L+ + 
Sbjct: 216 IPKNNPPTL--EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELI 273
Query: 181 CQYKDQELQTMH 192
            +YK  + +  H
Sbjct: 274 DRYKRWKAEQSH 285

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 117/184 (63%), Gaps = 7/184 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E +IA IL+EI+ G+ +LH    IHRD++ +NVLL++ G+VK+ DFG++ +  +T  K
Sbjct: 113 LEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK 172
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +  F+G+P WMAPE+++        YD + D+W+LGITAIEL  G+PP  D+HP R LF 
Sbjct: 173 RNXFVGTPFWMAPEVIKQS-----AYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFL 227
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I +N PP L      S+ + +F+  CL K+P  RP   ELL+H FIT   +    L+ + 
Sbjct: 228 IPKNSPPTL--EGQHSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKTSFLTELI 285
Query: 181 CQYK 184
            +YK
Sbjct: 286 DRYK 289

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 7/192 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA IL+EI+ G+ +LH    IHRD++ +NVLL++ GEVK+ DFG++ +  +T  K
Sbjct: 116 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +  F+G+P WMAPE+++        YD++ D+W+LGITAIEL  G+PP  ++HP + LF 
Sbjct: 176 RNXFVGTPFWMAPEVIKQS-----AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFL 230
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I +N PP L    N+S+   +F+  CL K P  RP   ELL+H FI    +   +L+ + 
Sbjct: 231 IPKNNPPTL--EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELI 288
Query: 181 CQYKDQELQTMH 192
            +YK  + +  H
Sbjct: 289 DRYKRWKAEQSH 300

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 7/192 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA IL+EI+ G+ +LH    IHRD++ +NVLL++ GEVK+ DFG++ +  +T  K
Sbjct: 101 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 160
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +  F+G+P WMAPE+++        YD++ D+W+LGITAIEL  G+PP  ++HP + LF 
Sbjct: 161 RNXFVGTPFWMAPEVIKQ-----SAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFL 215
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I +N PP L    N+S+   +F+  CL K P  RP   ELL+H FI    +   +L+ + 
Sbjct: 216 IPKNNPPTL--EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELI 273
Query: 181 CQYKDQELQTMH 192
            +YK  + +  H
Sbjct: 274 DRYKRWKAEQSH 285

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA IL+EI+ G+ +LH    IHRD++ +NVLL++ GEVK+ DFG++ +  +T  K
Sbjct: 121 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE+++        YD++ D+W+LGITAIEL  G+PP  ++HP + LF 
Sbjct: 181 RNTFVGTPFWMAPEVIKQ-----SAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFL 235
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +N PP L    N+S+   +F+  CL K P  RP   ELL+H FI
Sbjct: 236 IPKNNPPTL--EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFI 279

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 16/177 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           + E  IA IL+E++ G+ +LH+N  IHRD++  N+LL +DG V+I DFG+S   A   D 
Sbjct: 118 LDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDI 177
Query: 60  ----KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT 115
                +KTF+G+P WMAPE+M    ++V GYD + D+W+ GITAIEL  G  P+    P 
Sbjct: 178 TRNKVRKTFVGTPCWMAPEVM----EQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM 233
Query: 116 RALFQIVRNPPPGLYRA-------SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           + L   ++N PP L            + + +   I+ CL+K+PE RP  +ELL H F
Sbjct: 234 KVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKF 290

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 16/177 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           + E  IA IL+E++ G+ +LH+N  IHRD++  N+LL +DG V+I DFG+S   A   D 
Sbjct: 113 LDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDI 172
Query: 60  ----KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT 115
                +KTF+G+P WMAPE+M    ++V GYD + D+W+ GITAIEL  G  P+    P 
Sbjct: 173 TRNKVRKTFVGTPCWMAPEVM----EQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM 228
Query: 116 RALFQIVRNPPPGLYRA-------SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           + L   ++N PP L            + + +   I+ CL+K+PE RP  +ELL H F
Sbjct: 229 KVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKF 285

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 173 RSTMVGTPYWMAPEVVT-----RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CL+ + E R    ELL+H F+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +   +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 173 RSXMVGTPYWMAPEVVT-----RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CLE + E R    ELL+H F+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFL 273

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHR+++  N+LL  DG VK+ DFG   +      K
Sbjct: 114 MDEGQIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 173
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 174 RSTMVGTPYWMAPEVVT-----RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 228
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CLE + E R    EL++H F+
Sbjct: 229 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQHQFL 274

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 114 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 173
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +   +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 174 RSXMVGTPYWMAPEVVT-----RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 228
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CLE + E R    EL++H F+
Sbjct: 229 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQHQFL 274

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +   +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 173 RSEMVGTPYWMAPEVVT-----RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CL+ + E R    ELL+H F+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E+ IA + + ++  + +LH   VIHRD++  ++LLT DG VK+ DFG   + +    K
Sbjct: 138 LNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK 197
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+    P +A+ +
Sbjct: 198 RKXLVGTPYWMAPEVI-----SRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKR 252
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI--TSLPE 171
           +  +PPP L  +   S    DF+   L ++P+ R    ELL+HPF+  T LPE
Sbjct: 253 LRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTGLPE 305

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA +    + G+ +LH +++IHRD++  N+LL++ G VK+ DFG    +A+    
Sbjct: 112 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFG----SASIMAP 167
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              F+G+P WMAPE++     +   YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 168 ANXFVGTPYWMAPEVILA--MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 225
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +N  P L ++ +WS+++ +F+  CL+K P+ RP    LL+H F+
Sbjct: 226 IAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 270

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA +    + G+ +LH +++IHRD++  N+LL++ G VK+ DFG    +A+    
Sbjct: 151 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFG----SASIMAP 206
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              F+G+P WMAPE++     +   YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 207 ANXFVGTPYWMAPEVILA--MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 264
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I +N  P L ++ +WS+++ +F+  CL+K P+ RP    LL+H F+
Sbjct: 265 IAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 309

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 14/286 (4%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           V D   L  I+E+  ++ L  RH S N Y+++GDV++  NP  +LN+Y       Y  + 
Sbjct: 10  VPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRY 69
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGAAKVG 312
           + +  PH+YA+A+ AY+ M   +E Q ++++GE+ AGKT +         F+    +  G
Sbjct: 70  KYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 129
Query: 313 EKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV 368
           E+I K +     ++ A GNA T  N NS+R   YM++ F + G   G     Y LEK RV
Sbjct: 130 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRV 189
Query: 369 TGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGR-KYRYLRADVTDDKLPKGPRETPD 427
            G R   + +FHIFY     + +  +LD+  L+P    Y YL+     D        T D
Sbjct: 190 VG-RTQGERSFHIFYQMLKGL-SQSKLDELGLTPNAPAYEYLKKSGCFDV------STID 241
Query: 428 TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAE 473
            +  +F+ I + +  +   +        +LAAIL IG + F  +AE
Sbjct: 242 -DSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAE 286

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 14/286 (4%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           V D   L  I+E+  ++ L  RH S N Y+++GDV++  NP  +LN+Y       Y  + 
Sbjct: 10  VPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRY 69
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGAAKVG 312
           + +  PH+YA+A+ AY+ M   +E Q ++++GE+ AGKT +         F+    +  G
Sbjct: 70  KYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 129
Query: 313 EKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV 368
           E+I K +     ++ A GNA T  N NS+R   YM++ F + G   G     Y LEK RV
Sbjct: 130 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRV 189
Query: 369 TGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGR-KYRYLRADVTDDKLPKGPRETPD 427
            G R   + +FHIFY     + +  +LD+  L+P    Y YL+     D        T D
Sbjct: 190 VG-RTQGERSFHIFYQMLKGL-SQSKLDELGLTPNAPAYEYLKKSGCFDV------STID 241
Query: 428 TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAE 473
            +  +F+ I + +  +   +        +LAAIL IG + F  +AE
Sbjct: 242 -DSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAE 286

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 117 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 176
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 177 RKXLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 231
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 232 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 278

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 113 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 172
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 173 RKXLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 227
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 228 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 274

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 122 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 182 RKXLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 236
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 237 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 283

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 124 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 183
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 184 RKXLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 238
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 239 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 285

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 167 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 226
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 227 RKXLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 281
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 282 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 328

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  +  LH   VIHRD++  ++LLT DG VK+ DFG   + +    +
Sbjct: 244 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 303
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+  
Sbjct: 304 RKXLVGTPYWMAPELI-----SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM 358
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I  N PP L      S     F+   L ++P  R   +ELL+HPF+ 
Sbjct: 359 IRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLA 405

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 11/169 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E+ IA +   ++  + +LH   VIHRD++  ++LLT DG +K+ DFG   + +    K
Sbjct: 138 MNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPK 197
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K  +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+ +  P +A+ +
Sbjct: 198 RKXLVGTPYWMAPEVI-----SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRR 252
Query: 121 IVRNPPP---GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  + PP    L++ S+  + ++D +   L + P  R    ELL HPF+
Sbjct: 253 IRDSLPPRVKDLHKVSSVLRGFLDLM---LVREPSQRATAQELLGHPFL 298

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 16/172 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDK 60
           +EQ I F  K+I+ G+ +LH+N ++HRD++G NVL+ T  G +KI DFG S+  A     
Sbjct: 120 NEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC 179
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALF 119
            +TF G+  +MAPEI+  G +   GY    D+W+LG T IE+  GKPPF ++  P  A+F
Sbjct: 180 TETFTGTLQYMAPEIIDKGPR---GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMF 236
Query: 120 QIVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           ++      G+++       + S     FI +C E +P+ R   ++LL   F+
Sbjct: 237 KV------GMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFL 282

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 99/172 (57%), Gaps = 16/172 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDK 60
           +EQ I F  K+I+ G+ +LH+N ++HRD++G NVL+ T  G +KI DFG S+  A     
Sbjct: 106 NEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC 165
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALF 119
            +TF G+  +MAPEI+  G +   GY    D+W+LG T IE+  GKPPF ++  P  A+F
Sbjct: 166 TETFTGTLQYMAPEIIDKGPR---GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMF 222
Query: 120 QIVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           ++      G+++       + S     FI +C E +P+ R   ++LL   F+
Sbjct: 223 KV------GMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFL 268

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 139/293 (47%), Gaps = 24/293 (8%)
Query: 195 DLAALETISEDNIVQELEERH-NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSR 253
           DL AL  + E  ++  L+ R  +SK  Y++ G VL+ INP   L +YG      Y  ++ 
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNM 132
Query: 254 SDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGA--AKV 311
            D +PHI+AVA+ AY+ M   E  Q I+++GE+ AGKT S          +   A  A V
Sbjct: 133 GDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANV 192
Query: 312 GEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGN 371
            EK+     ++ +IGNA T  N NS+R   Y+++ F    ++ GA    Y LEK RV   
Sbjct: 193 EEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQ 252
Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRA------DVTDDKLPKGPRET 425
            +  + N+HIFY    A  A  E     L     + Y +       D  DD      +E 
Sbjct: 253 AEE-ERNYHIFYQLC-ASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDD-----AKEM 305
Query: 426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAEL 478
            +T  A        L+ I  D  QM IF  +LA IL +G VEF S   ++  +
Sbjct: 306 VNTRQA------CTLLGIS-DSYQMGIF-RILAGILHLGNVEFASRDSDSCAI 350

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 139/293 (47%), Gaps = 24/293 (8%)
Query: 195 DLAALETISEDNIVQELEERH-NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSR 253
           DL AL  + E  ++  L+ R  +SK  Y++ G VL+ INP   L +YG      Y  ++ 
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNM 132
Query: 254 SDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGA--AKV 311
            D +PHI+AVA+ AY+ M   E  Q I+++GE+ AGKT S          +   A  A V
Sbjct: 133 GDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANV 192
Query: 312 GEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGN 371
            EK+     ++ +IGNA T  N NS+R   Y+++ F    ++ GA    Y LEK RV   
Sbjct: 193 EEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQ 252
Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRA------DVTDDKLPKGPRET 425
            +  + N+HIFY    A  A  E     L     + Y +       D  DD      +E 
Sbjct: 253 AEE-ERNYHIFYQLC-ASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDD-----AKEM 305
Query: 426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAEL 478
            +T  A        L+ I  D  QM IF  +LA IL +G VEF S   ++  +
Sbjct: 306 VNTRQA------CTLLGIS-DSYQMGIF-RILAGILHLGNVEFASRDSDSCAI 350

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 139/293 (47%), Gaps = 24/293 (8%)
Query: 195 DLAALETISEDNIVQELEERH-NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSR 253
           DL AL  + E  ++  L+ R  +SK  Y++ G VL+ INP   L +YG      Y  ++ 
Sbjct: 73  DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNM 132
Query: 254 SDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGA--AKV 311
            D +PHI+AVA+ AY+ M   E  Q I+++GE+ AGKT S          +   A  A V
Sbjct: 133 GDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANV 192
Query: 312 GEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGN 371
            EK+     ++ +IGNA T  N NS+R   Y+++ F    ++ GA    Y LEK RV   
Sbjct: 193 EEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQ 252
Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRA------DVTDDKLPKGPRET 425
            +  + N+HIFY    A  A  E     L     + Y +       D  DD      +E 
Sbjct: 253 AEE-ERNYHIFYQLC-ASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDD-----AKEM 305
Query: 426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAEL 478
            +T  A        L+ I  D  QM IF  +LA IL +G VEF S   ++  +
Sbjct: 306 VNTRQA------CTLLGIS-DSYQMGIF-RILAGILHLGNVEFASRDSDSCAI 350

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q+M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 70  KKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 129
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT +    
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN---T 186
Query: 298 XXXXIFLGQGAAKVGEKIEKCVN---------------VIHAIGNAGTPINQNSTRHVLY 342
               ++L + A  V +K E+  +               V+ A GNA T  N NS+R   +
Sbjct: 187 KKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKF 246
Query: 343 MQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
           +++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 247 IRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 286

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q+M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 70  KKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 129
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT +    
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN---T 186
Query: 298 XXXXIFLGQGAAKVGEKIEKCVN---------------VIHAIGNAGTPINQNSTRHVLY 342
               ++L + A  V +K E+  +               V+ A GNA T  N NS+R   +
Sbjct: 187 KKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKF 246
Query: 343 MQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
           +++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 247 IRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 286

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 27/305 (8%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
            ED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y       Y+ K 
Sbjct: 62  AEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKK 121
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R +  PH+YAV + AY+ M+   E Q I+  GE+ AGKT +          +     G+ 
Sbjct: 122 RHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRK 181
Query: 308 AAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQL 363
              V  ++E+ +     ++ A GNA T  N NS+R   ++++ F  +G + GA    Y L
Sbjct: 182 EPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLL 241
Query: 364 EKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDK--YFLSPGRKYRYLRADVTDDKLPK 420
           EK R +   +D  + +FHIFY     +  AGE  K    L P   YR+         L  
Sbjct: 242 EKSRAIRQAKD--ECSFHIFYQL---LGGAGEQLKADLLLEPCSHYRF---------LTN 287
Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
           GP  +P      FQE  ++L  + F   ++     +++A+L  G +  +    NT +   
Sbjct: 288 GPSSSPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRE-RNTDQATM 346
Query: 481 PEVAA 485
           P+  A
Sbjct: 347 PDNTA 351

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q+M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 70  KKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 129
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT +    
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN---T 186
Query: 298 XXXXIFLGQGAAKVGEKIEKCVN---------------VIHAIGNAGTPINQNSTRHVLY 342
               ++L + A  V +K E+  +               V+ A GNA T  N NS+R   +
Sbjct: 187 KKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKF 246
Query: 343 MQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
           +++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 247 IRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 286

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q+M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 66  KKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 125
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT +    
Sbjct: 126 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN---T 182
Query: 298 XXXXIFLGQGAAKVGEKIEKCVN---------------VIHAIGNAGTPINQNSTRHVLY 342
               ++L + A  V +K E+  +               V+ A GNA T  N NS+R   +
Sbjct: 183 KKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKF 242
Query: 343 MQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
           +++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 243 IRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 282

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 25/221 (11%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q+M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 65  KKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 124
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT +    
Sbjct: 125 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN---T 181
Query: 298 XXXXIFLGQGAAKVGEKIEKCVN---------------VIHAIGNAGTPINQNSTRHVLY 342
               ++L + A  V +K E+  +               V+ A GNA T  N NS+R   +
Sbjct: 182 KKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKF 241
Query: 343 MQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
           +++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 242 IRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 281

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 87  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 147 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 206
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 207 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 266
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 267 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 322
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 323 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 370

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 99  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 158
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 159 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 218
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 219 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 278
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 279 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 334
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 335 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 382

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 99  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 158
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 159 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 218
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 219 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 278
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 279 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 334
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 335 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 382

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 99  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 158
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 159 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 218
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 219 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 278
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 279 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 334
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 335 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 382

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 99  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 158
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 159 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 218
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 219 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 278
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 279 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 334
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 335 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 382

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 87  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 147 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 206
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 207 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 266
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 267 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 322
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 323 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 370

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 87  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 147 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 206
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 207 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 266
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 267 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 322
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 323 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 370

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 87  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 147 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 206
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 207 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 266
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 267 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 322
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 323 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 370

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 18/206 (8%)
Query: 195 DLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS 254
           D+A L  ++E +I+  L  R+ S   Y++ G   + INP   L +Y      KY+ K R+
Sbjct: 87  DMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYRRLPIYTQGLVDKYRGKRRA 146
Query: 255 DNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGAA----- 309
           +  PH++++AD+AYQ M+   E Q +++ GE+ AGKT +          +    A     
Sbjct: 147 EMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVIQYFALVAASLAGKKDK 206
Query: 310 ------------KVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAI 357
                        + ++I +C  V+ A GNA T  N NS+R   ++++ FG+ GK++GA 
Sbjct: 207 KEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGAD 266
Query: 358 FWLYQLEKWRVTGNRDPLQANFHIFY 383
              Y LEK RVT  +   + N+HIFY
Sbjct: 267 IETYLLEKSRVTYQQSA-ERNYHIFY 291

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 6/190 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E+ +  I    +  +  L EN  +IHRD++ SN+LL + G +K+ DFG+S +  ++  
Sbjct: 122 IPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA 181
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RAL 118
           K +   G   +MAPE +        GYD R DVW+LGIT  EL  G+ P+   +     L
Sbjct: 182 KTRD-AGCRPYMAPERIDPSASR-QGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQL 239
Query: 119 FQIVRNPPPGLYRAS--NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
            Q+V+  PP L  +    +S  +++F+  CL K+   RP   ELL+HPFI    E  + +
Sbjct: 240 TQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERAVEV 299
Query: 177 STVNCQYKDQ 186
           +   C+  DQ
Sbjct: 300 ACYVCKILDQ 309

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N N++R   ++++ F S+G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 87  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMVDIFKGRR 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 147 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 206
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 207 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 266
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 267 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 322
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 323 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 370

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 87  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMVDIFKGRR 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 147 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 206
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F S+G +SGA    Y LEK R
Sbjct: 207 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 266
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 267 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 322
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 323 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 370

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 16/294 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V    +  + N+HIFY    A   A E     L+    + YL      D   KG  ++ +
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVD--IKGVSDSEE 323
Query: 428 TNVAKFQEIYQNLIDIEFD-DIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             + +     Q +  + F  + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 324 FKITR-----QAMDIVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 31/311 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 85  VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLG------- 305
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT +          +        
Sbjct: 145 RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 204
Query: 306 -----QGAAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                QG +    ++EK +     ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 205 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264
Query: 357 IFWLYQLEKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVT 414
               Y LEK R +   +D  +  FHIFYY      A+ ++    L  G   Y +L    +
Sbjct: 265 NIETYLLEKSRAIRQAKD--ERTFHIFYYLIAG--ASEQMRNDLLLEGFNNYTFL----S 316
Query: 415 DDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN 474
           +  +P  P +  D     FQE  + +  + F + +      V++++L +G + F+    N
Sbjct: 317 NGHVPI-PAQQDD---EMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKE-RN 371
Query: 475 TAELANPEVAA 485
           T + + P+  A
Sbjct: 372 TDQASMPDNTA 382

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 31/311 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 85  VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLG------- 305
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT +          +        
Sbjct: 145 RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 204
Query: 306 -----QGAAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                QG +    ++EK +     ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 205 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264
Query: 357 IFWLYQLEKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVT 414
               Y LEK R +   +D  +  FHIFYY      A+ ++    L  G   Y +L    +
Sbjct: 265 NIETYLLEKSRAIRQAKD--ERTFHIFYYLIAG--ASEQMRNDLLLEGFNNYTFL----S 316
Query: 415 DDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN 474
           +  +P  P +  D     FQE  + +  + F + +      V++++L +G + F+    N
Sbjct: 317 NGHVPI-PAQQDD---EMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKE-RN 371
Query: 475 TAELANPEVAA 485
           T + + P+  A
Sbjct: 372 TDQASMPDNTA 382

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 28/300 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRAD-------VTDDKLPK 420
           V   +   + N+HIFY    A   A E     L+    + YL          V+D++  K
Sbjct: 268 VVF-QSTTERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEEEFK 325
Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             R+  D  +  F +           + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 326 ITRQAMD--IVGFSQ-----------EEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 31/311 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 85  VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLG------- 305
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT +          +        
Sbjct: 145 RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 204
Query: 306 -----QGAAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                QG +    ++EK +     ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 205 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264
Query: 357 IFWLYQLEKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVT 414
               Y LEK R +   +D  +  FHIFYY      A+ ++    L  G   Y +L    +
Sbjct: 265 NIETYLLEKSRAIRQAKD--ERTFHIFYYLIAG--ASEQMRNDLLLEGFNNYTFL----S 316
Query: 415 DDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN 474
           +  +P   ++  +     FQE  + +  + F + +      V++++L +G + F+    N
Sbjct: 317 NGHVPIPAQQDDEM----FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKE-RN 371
Query: 475 TAELANPEVAA 485
           T + + P+  A
Sbjct: 372 TDQASMPDNTA 382

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 28/300 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRAD-------VTDDKLPK 420
           V    +  + N+HIFY    A   A E     L+    + YL          V+D+   K
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             R+  D  +  F +           + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 326 ITRQAMD--IVGFSQ-----------EEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 28/300 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRAD-------VTDDKLPK 420
           V   +   + N+HIFY    A   A E     L+    + YL          V+D+   K
Sbjct: 268 VVF-QSTTERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             R+  D  +  F +           + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 326 ITRQAMD--IVGFSQ-----------EEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 31/311 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 85  VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLG------- 305
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT +          +        
Sbjct: 145 RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 204
Query: 306 -----QGAAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                QG +    ++EK +     ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 205 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264
Query: 357 IFWLYQLEKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVT 414
               Y LEK R +   +D  +  FHIFYY      A+ ++    L  G   Y +L    +
Sbjct: 265 NIETYLLEKSRAIRQAKD--ERTFHIFYYLIAG--ASEQMRNDLLLEGFNNYTFL----S 316
Query: 415 DDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN 474
           +  +P   ++  +     FQE  + +  + F + +      V++++L +G + F+    N
Sbjct: 317 NGHVPIPAQQDDEM----FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKE-RN 371
Query: 475 TAELANPEVAA 485
           T + + P+  A
Sbjct: 372 TDQASMPDNTA 382

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 31/311 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 85  VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLG------- 305
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT +          +        
Sbjct: 145 RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 204
Query: 306 -----QGAAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                QG +    ++EK +     ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 205 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264
Query: 357 IFWLYQLEKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVT 414
               Y LEK R +   +D  +  FHIFYY      A+ ++    L  G   Y +L    +
Sbjct: 265 NIETYLLEKSRAIRQAKD--ERTFHIFYYLIAG--ASEQMRNDLLLEGFNNYTFL----S 316
Query: 415 DDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN 474
           +  +P   ++  +     FQE  + +  + F + +      V++++L +G + F+    N
Sbjct: 317 NGHVPIPAQQDDEM----FQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKE-RN 371
Query: 475 TAELANPEVAA 485
           T + + P+  A
Sbjct: 372 TDQASMPDNTA 382

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 19/177 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 159
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------EDMH 113
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P       ED  
Sbjct: 160 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEDSR 213
Query: 114 PTRALFQ----IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           P  A+F+    IV  PPP L  +  +S  + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 214 PPMAIFELLDYIVNEPPPKL-PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 269

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 28/300 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRAD-------VTDDKLPK 420
           V   +   + N+HIFY    A   A E     L+    + YL          V+D+   K
Sbjct: 268 VVF-QSTSERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             R+  D  +  F +           + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 326 ITRQAMD--IVGFSQ-----------EEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 99/169 (58%), Gaps = 13/169 (7%)
Query: 3   EQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++    
Sbjct: 122 EQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM--A 179
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
            +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P      + A+F+ 
Sbjct: 180 NSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIGSGSGSMAIFEL 234
Query: 121 ---IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
              IV  PPP L  +  +S  + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 235 LDYIVNEPPPKL-PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 282

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 26/222 (11%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q M+      +ED+A +  ++E +++  L  R+ +   Y++ G   + +NP   L
Sbjct: 70  KKDDIQQMNPPKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRL 129
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT S    
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTES---T 186
Query: 298 XXXXIFLGQGAAKVGEKIEKCV----------------NVIHAIGNAGTPINQNSTRHVL 341
               ++  + AA + ++ E+ V                 V+ A GNA T  N NS+R   
Sbjct: 187 KKVIMYFARVAANLYKQKEEPVPNLRASNLEDQIIEANPVLEAFGNAKTVRNNNSSRFGK 246
Query: 342 YMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
           ++++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 247 FIRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 287

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 31/311 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 85  VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLG------- 305
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT +          +        
Sbjct: 145 RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 204
Query: 306 -----QGAAKVGEKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                QG +    ++EK +     ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 205 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264
Query: 357 IFWLYQLEKWR-VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVT 414
               Y LEK R +   +D  +  FHIFYY      A+ ++    L  G   Y +L    +
Sbjct: 265 NIETYLLEKSRAIRQAKD--ERTFHIFYYLIAG--ASEQMRNDLLLEGFNNYTFL----S 316
Query: 415 DDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAEN 474
           +  +P  P +  D     FQE  + +  + F + +      V++++L +G + F+    N
Sbjct: 317 NGHVP-IPAQQDD---EMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKE-RN 371
Query: 475 TAELANPEVAA 485
           T + + P+  A
Sbjct: 372 TDQASMPDNTA 382

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 27/223 (12%)
Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q M+      +ED+A +  ++E +++  L  R+ +   Y++ G   + +NP   L
Sbjct: 70  KKDDIQQMNPPKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRL 129
Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXX 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT +    
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN---T 186
Query: 298 XXXXIFLGQGAAKVGEK-----------------IEKCVNVIHAIGNAGTPINQNSTRHV 340
               ++L + A  V +K                 I +   V+ A GNA T  N NS+R  
Sbjct: 187 KKVIMYLAKVACAVKKKTSEEEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFG 246
Query: 341 LYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFY 383
            ++++ FG +GK++GA    Y LEK RVT  +   + N+HIFY
Sbjct: 247 KFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSA-ERNYHIFY 288

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 143/300 (47%), Gaps = 28/300 (9%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 88  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFL-----GQG 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT +          +       G
Sbjct: 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 207
Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+    ++++ F ++G +SGA    Y LEK R
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRAD-------VTDDKLPK 420
           V    +  + N+HIFY    A   A E     L+    + YL          V+D+   K
Sbjct: 268 VVFQSET-ERNYHIFYQLL-AGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFK 325
Query: 421 GPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELAN 480
             R+  D  +  F +           + QM IF  ++A IL +G ++FE  A   A L +
Sbjct: 326 ITRQAMD--IVGFSQ-----------EEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKD 371

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLS----RETA 55
           + E  +  I   I+  +  LH    VIHRD++ SNVL+   G+VK+ DFG+S       A
Sbjct: 150 IPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVA 209
Query: 56  NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HP 114
            T D      G   +MAPE +     +  GY  + D+W+LGIT IEL   + P++    P
Sbjct: 210 KTIDA-----GCKPYMAPERINPELNQ-KGYSVKSDIWSLGITMIELAILRFPYDSWGTP 263
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            + L Q+V  P P L  A  +S  +VDF ++CL+KN + RP   EL++HPF T
Sbjct: 264 FQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFT 315

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  +  +
Sbjct: 104 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID--E 161
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
               F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P   M     L 
Sbjct: 162 MANEFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPRPPMAIFELLD 216
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            IV  PPP L  A  +S  + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 217 YIVNEPPPKLPSAV-FSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 262

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
Query: 1   MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E  +  I   I+  +  LH    VIHRD++ SNVL+   G+VK+ DFG+S    +   
Sbjct: 106 IPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDV- 164
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRAL 118
            K    G   +MAPE +     +  GY  + D+W+LGIT IEL   + P++    P + L
Sbjct: 165 AKDIDAGCKPYMAPERINPELNQ-KGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL 223
Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            Q+V  P P L  A  +S  +VDF ++CL+KN + RP   EL++HPF T
Sbjct: 224 KQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFT 271

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 114 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 173
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KKT  G+P+++APE++        G+   +DVW++G     L  GKPPFE         +
Sbjct: 174 KKTLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR 228
Query: 121 IVRNPPPGLYRASNWSQHY----VDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N         +  +H        I + L+ +P  RP ++ELL   F TS
Sbjct: 229 IKKN-------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 273

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 118 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 177
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KKT  G+P+++APE++        G+   +DVW++G     L  GKPPFE         +
Sbjct: 178 KKTLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR 232
Query: 121 IVRNPPPGLYRASNWSQHY----VDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N         +  +H        I + L+ +P  RP ++ELL   F TS
Sbjct: 233 IKKN-------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 277

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 114 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 173
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KKT  G+P+++APE++        G+   +DVW++G     L  GKPPFE         +
Sbjct: 174 KKTLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR 228
Query: 121 IVRNPPPGLYRASNWSQHY----VDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N         +  +H        I + L+ +P  RP ++ELL   F TS
Sbjct: 229 IKKN-------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 273

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E+ +  +   I+  + +L E H VIHRD++ SN+LL + G++K+ DFG+S    +   
Sbjct: 121 IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA 180
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RAL 118
           K ++  G  ++MAPE +         YD R DVW+LGI+ +EL  G+ P+++       L
Sbjct: 181 KDRS-AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVL 239
Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            ++++  PP L     +S  +  F+ +CL K+   RP  ++LLEH FI
Sbjct: 240 TKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFI 287

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 12/202 (5%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           +ED+A L  + E  ++  L++R+ S   Y++ G   + +NP   L +Y  +    Y+ K 
Sbjct: 87  IEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKK 146
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQ------ 306
           RS+  PHI++++D+AYQ M+   E Q I++ GE+ AGKT +          +        
Sbjct: 147 RSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSK 206
Query: 307 -----GAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLY 361
                G   + ++I +    + A GNA T  N NS+R   ++++ FG++GKL+ A    Y
Sbjct: 207 KDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETY 266
Query: 362 QLEKWRVTGNRDPLQANFHIFY 383
            LEK RV       + ++HIFY
Sbjct: 267 LLEKSRVIFQLKA-ERDYHIFY 287

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 112 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 171
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++        G+   +DVW++G     L  GKPPFE         +
Sbjct: 172 KKVLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR 226
Query: 121 IVRNPPPGLYRASNWSQHY----VDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N         +  +H        I + L+ +P  RP ++ELL   F TS
Sbjct: 227 IKKN-------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 271

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 136 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++        G+   +DVW++G     L  GKPPFE         +
Sbjct: 196 KKVLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR 250
Query: 121 IVRNPPPGLYRASNWSQHY----VDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N         +  +H        I + L+ +P  RP ++ELL   F TS
Sbjct: 251 IKKN-------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 295

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 13/203 (6%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           +ED+A +  + E  ++  L ER+ +   Y++ G   + +NP   L +Y       Y+ K 
Sbjct: 85  IEDMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLPVYNPXVVLAYRGKK 144
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGAAKVG 312
           R +  PHI++++D+AYQ M+   E Q I++ GE+ AGKT +          +     K  
Sbjct: 145 RQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKKK 204
Query: 313 E------------KIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWL 360
           E            +I     ++ A GNA T  N NS+R   ++++ FG++GKL+ A    
Sbjct: 205 EEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIET 264
Query: 361 YQLEKWRVTGNRDPLQANFHIFY 383
           Y LE  RVT    P + ++HIFY
Sbjct: 265 YLLEXSRVTFQL-PAERSYHIFY 286

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 138 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 197
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++        G+   +DVW++G     L  GKPPFE         +
Sbjct: 198 KKVLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLR 252
Query: 121 IVRNPPPGLYRASNWSQHY----VDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N         +  +H        I + L+ +P  RP ++ELL   F TS
Sbjct: 253 IKKN-------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTS 297

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 13/203 (6%)
Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           +ED+A +  + E  ++  L ER+ +   Y++ G   + +NP   L +Y       Y+ K 
Sbjct: 88  IEDMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLPVYNPXVVLAYRGKK 147
Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSXXXXXXXXIFLGQGAAKVG 312
           R +  PHI++++D+AYQ M+   E Q I++ GE+ AGKT +          +     K  
Sbjct: 148 RQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQYFATIAASGEKKK 207
Query: 313 E------------KIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWL 360
           E            +I     ++ A GNA T  N NS+R   ++++ FG++GKL+ A    
Sbjct: 208 EEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFGATGKLASADIET 267
Query: 361 YQLEKWRVTGNRDPLQANFHIFY 383
           Y LE  RVT    P + ++HIFY
Sbjct: 268 YLLEXSRVTFQL-PAERSYHIFY 289

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLS----RETA 55
           + E  +  I   I+  +  LH    VIHRD++ SNVL+   G+VK  DFG+S     + A
Sbjct: 133 IPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVA 192
Query: 56  NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HP 114
              D       +P  + PE+ +       GY  + D+W+LGIT IEL   + P++    P
Sbjct: 193 KDIDAGCKPYXAPERINPELNQ------KGYSVKSDIWSLGITXIELAILRFPYDSWGTP 246
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            + L Q+V  P P L  A  +S  +VDF ++CL+KN + RP   EL +HPF T
Sbjct: 247 FQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPELXQHPFFT 298

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE      + +IITGM++LH + ++HRDL  SN+LLT++  +KI DFGL+ +     +K 
Sbjct: 110 SENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKH 169
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            T  G+P++++PEI     +   G ++  DVW+LG     L  G+PPF+       L ++
Sbjct: 170 YTLCGTPNYISPEI---ATRSAHGLES--DVWSLGCMFYTLLIGRPPFDTDTVKNTLNKV 224
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           V          S  S    D I + L +NP  R  +S +L+HPF++
Sbjct: 225 VL---ADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMS 267

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE+    I++ ++  + FLH N+++HRDL+  N+LL  + ++++ DFG S       +K
Sbjct: 197 LSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHL-EPGEK 255
Query: 61  KKTFLGSPSWMAPEIMRCGHKEV-DGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
            +   G+P ++APEI++C   E   GY   +D+WA G+    L  G PPF   H  + L 
Sbjct: 256 LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPF--WHRRQIL- 312
Query: 120 QIVRNPPPGLYRASN--W---SQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
            ++R    G Y+ S+  W   S    D I+  L+ +PE R    + L+HPF
Sbjct: 313 -MLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPF 362

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 124 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 181
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 182 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 236
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 237 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 285
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 286 NCQNKE 291

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 112 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 169
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 170 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 225 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 273
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 274 NCQNKE 279

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 112 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 169
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 170 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 225 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 273
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 274 NCQNKE 279

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 110 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 167
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 168 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 223 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 271
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 272 NCQNKE 277

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFDKKKT 63
           A I+K++++G+ +LH+++++HRDL+  N+LL    KD  +KIVDFGLS    N   K K 
Sbjct: 139 AVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ-KKMKE 197
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
            LG+  ++APE++R        YD + DVW++G+    L  G PPF          +I+R
Sbjct: 198 RLGTAYYIAPEVLR------KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ----EILR 247
Query: 124 NPPPGLY-----RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
               G Y        N S+   D I + L+ + + R    + LEHP+I  +
Sbjct: 248 KVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM 298

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 133 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 190
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 191 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 245
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 246 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 294
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 295 NCQNKE 300

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 108 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRD 165
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 166 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 221 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 269
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 270 NCQNKE 275

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 268
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 269 NCQNKE 274

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 142/303 (46%), Gaps = 12/303 (3%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 41  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 100
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 101 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 160
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 161 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 220
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYL-RADV 413
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL R   
Sbjct: 221 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGGS 278
Query: 414 TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAE 473
             D L          +   F  +   +  I  DD +      V+A +L +G ++FE +  
Sbjct: 279 LKDPLL--------DDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 330
Query: 474 NTA 476
            + 
Sbjct: 331 TSG 333

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 41  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 100
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 101 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 160
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 161 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 220
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 221 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 278
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 279 RYFANKETDKQILQNRKSPEYLKAGSLKDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 338
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 339 VVAGVLHLGNIDFEEAGSTSG 359

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE    F  +++I G+ +LH   +IHRD++ SN+L+ +DG +KI DFG+S E   +   
Sbjct: 134 LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL 193
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               +G+P++MAPE +    K   G    +DVWA+G+T      G+ PF D      L  
Sbjct: 194 LSNTVGTPAFMAPESLSETRKIFSG--KALDVWAMGVTLYCFVFGQCPFMDER-IMCLHS 250
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            +++         + ++   D I   L+KNPE R  + E+  HP++T
Sbjct: 251 KIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT 297

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 42  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 101
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 102 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 162 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 221
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 222 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 279
Query: 415 -------DDKLPKGPRETPD------------TNVAKFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+             +   F  +   +  I  DD +      
Sbjct: 280 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 339
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 340 VVAGVLHLGNIDFEEAGSTSG 360

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 142/303 (46%), Gaps = 12/303 (3%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 42  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 101
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 102 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 162 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 221
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYL-RADV 413
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL R   
Sbjct: 222 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGGS 279
Query: 414 TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAE 473
             D L          +   F  +   +  I  DD +      V+A +L +G ++FE +  
Sbjct: 280 LKDPLL--------DDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 331
Query: 474 NTA 476
            + 
Sbjct: 332 TSG 334

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 51  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 110
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 111 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 170
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 171 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 230
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 231 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 288
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 289 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 348
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 349 VVAGVLHLGNIDFEEAGSTSG 369

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 41  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 100
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 101 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 160
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 161 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 220
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 221 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 278
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 279 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 338
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 339 VVAGVLHLGNIDFEEAGSTSG 359

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 42  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 101
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 102 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 162 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 221
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 222 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 279
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 280 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 339
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 340 VVAGVLHLGNIDFEEAGSTSG 360

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 51  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 110
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 111 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 170
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 171 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 230
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 231 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 288
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 289 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 348
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 349 VVAGVLHLGNIDFEEAGSTSG 369

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 38  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 97
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 98  DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 158 KFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 217
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 218 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 275
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 276 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 335
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 336 VVAGVLHLGNIDFEEAGSTSG 356

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 112 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 169
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE +     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 170 TLCGTLDYLPPEXI-----EGRXHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 225 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPXLREVLEHPWITA---NSSKPS-- 273
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 274 NCQNKE 279

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 142/303 (46%), Gaps = 12/303 (3%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 41  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 100
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 101 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 160
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 161 KFVLRYLTESYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 220
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYL-RADV 413
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL R   
Sbjct: 221 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGGS 278
Query: 414 TDDKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAE 473
             D L          +   F  +   +  I  DD +      V+A +L +G ++FE +  
Sbjct: 279 LKDPLL--------DDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS 330
Query: 474 NTA 476
            + 
Sbjct: 331 TSG 333

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 110 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 167
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 168 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 223 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 265

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 104 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 161
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 162 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 216
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 217 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 259

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 106 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 163
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 164 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 218
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 219 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 261

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 111 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 168
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 169 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 223
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 224 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 266

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 41  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 100
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 101 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 160
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 161 KFVLRYLTESYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 220
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 221 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 278
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 279 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 338
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 339 VVAGVLHLGNIDFEEAGSTSG 359

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 147/321 (45%), Gaps = 22/321 (6%)
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           L+ +N  +  +E     VED  +L  ++E  ++  ++ R++    Y++V ++L+ +NP  
Sbjct: 39  LALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 98
Query: 236 HL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSX 294
            +  +Y ++    Y+ KS     PH++A+AD A++DM   + +Q I+++GE+ AGKT + 
Sbjct: 99  DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 158
Query: 295 XXXXXXXIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLS 354
                           + ++I +   ++ A GNA T  N NS+R   ++++ F     + 
Sbjct: 159 KFVLRYLTESYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVV 218
Query: 355 GAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVT 414
           G     Y LEK R+   +   + N+HIFY    A  +    ++  LS    +RYL    T
Sbjct: 219 GGFVSHYLLEKSRICV-QGKEERNYHIFYRLC-AGASEDIRERLHLSSPDNFRYLNRGCT 276
Query: 415 -------DDKLPKGPRETPDTNVA------------KFQEIYQNLIDIEFDDIQMEIFSN 455
                   DK     R++P+   A             F  +   +  I  DD +      
Sbjct: 277 RYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFR 336
Query: 456 VLAAILLIGEVEFESSAENTA 476
           V+A +L +G ++FE +   + 
Sbjct: 337 VVAGVLHLGNIDFEEAGSTSG 357

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + +++ I G+ +LH N VIHRDL+  N+ L  D +VKI DFGL+ +     ++
Sbjct: 139 VTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGER 198
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KKT  G+P+++APE++ C      G+   +D+W+LG     L  GKPPFE         +
Sbjct: 199 KKTLCGTPNYIAPEVL-CK----KGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 253
Query: 121 IVRNPPPGLYRASNWSQHYVD-FIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N     Y             I   L  +P  RP ++ELL   F TS
Sbjct: 254 IKKNE----YSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTS 298

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 108 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSS--RRT 165
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 166 TLSGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 221 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 263

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 110 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRA 167
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 168 ALCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 223 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 271
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 272 NCQNKE 277

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI +FG S    ++  ++ 
Sbjct: 109 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSS--RRT 166
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 167 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 221
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 222 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 270
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 271 NCQNKE 276

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           +I   +  +H+  ++HRD++  N+ LTKDG V++ DFG++R   +T +  +  +G+P ++
Sbjct: 133 QICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYL 192
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPGL 129
           +PEI  C +K    Y+N+ D+WALG    EL   K  FE       + +I+    PP  L
Sbjct: 193 SPEI--CENKP---YNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSL 247
Query: 130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
           +    +S      +++  ++NP  RP ++ +LE  FI    E  L
Sbjct: 248 H----YSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKFL 288

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 109 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRX 166
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 167 XLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 221
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 222 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 270
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 271 NCQNKE 276

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 112 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRX 169
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 170 XLXGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 225 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 273
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 274 NCQNKE 279

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 DLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 268
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 269 NCQNKE 274

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 112 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 169
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 170 DLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 224
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 225 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 273
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 274 NCQNKE 279

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 108 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 165
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 166 DLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 220
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 221 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 269
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 270 NCQNKE 275

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 ELCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 268
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 269 NCQNKE 274

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 DLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 268
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 269 NCQNKE 274

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 133 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRD 190
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 191 DLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 245
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+   N    S  
Sbjct: 246 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA---NSSKPS-- 294
Query: 180 NCQYKD 185
           NCQ K+
Sbjct: 295 NCQNKE 300

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 51/209 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 163 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 221
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 222 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 275
Query: 111 -----------------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQ 137
                                        D  P  A+F+    IV  PPP L  A  +S 
Sbjct: 276 MFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSAV-FSL 334
Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 335 EFQDFVNKCLIKNPAERADLKQLMVHAFI 363

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI +FG S    ++  ++ 
Sbjct: 110 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSS--RRT 167
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 168 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 223 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 265

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 106 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 165
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 166 KTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 219
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 220 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 277
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 278 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 307

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRA 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 ALCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 262

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 103 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 163 KTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 216
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 217 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 274
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 275 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 304

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 103 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 163 KTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 216
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 217 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 274
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 275 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 304

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 110 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRX 167
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 168 XLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 223 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 265

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + +++ I G+ +LH N VIHRDL+  N+ L  D +VKI DFGL+ +     ++
Sbjct: 139 VTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGER 198
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++ C      G+   +D+W+LG     L  GKPPFE         +
Sbjct: 199 KKXLCGTPNYIAPEVL-CK----KGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 253
Query: 121 IVRNPPPGLYRASNWSQHYVD-FIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N     Y             I   L  +P  RP ++ELL   F TS
Sbjct: 254 IKKNE----YSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTS 298

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRX 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 XLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 262

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRT 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 165 XLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 219
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 220 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 262

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 107 EQRTATYITELANALSYCHSKKVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRA 164
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--DMHPTRALFQ 120
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE      T     
Sbjct: 165 ALCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQDTYKRIS 219
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            V    P        ++   D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 220 RVEFTFPDFV-----TEGARDLISRLLKHNPSQRPMLREVLEHPWITA 262

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + +++ I G+ +LH N VIHRDL+  N+ L  D +VKI DFGL+ +     ++
Sbjct: 139 VTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGER 198
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++ C      G+   +D+W+LG     L  GKPPFE         +
Sbjct: 199 KKDLCGTPNYIAPEVL-CK----KGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 253
Query: 121 IVRNPPPGLYRASNWSQHYVD-FIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N     Y             I   L  +P  RP ++ELL   F TS
Sbjct: 254 IKKNE----YSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTS 298

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + +++ I G+ +LH N VIHRDL+  N+ L  D +VKI DFGL+ +     ++
Sbjct: 123 VTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGER 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++ C      G+   +D+W+LG     L  GKPPFE         +
Sbjct: 183 KKDLCGTPNYIAPEVL-CKK----GHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 237
Query: 121 IVRNPPPGLYRASNWSQHYVD-FIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N     Y             I   L  +P  RP ++ELL   F TS
Sbjct: 238 IKKNE----YSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTS 282

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 51/209 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 128 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 186
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 187 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 240
Query: 111 -----------------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQ 137
                                        D  P  A+F+    IV  PPP L  +  +S 
Sbjct: 241 MFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKL-PSGVFSL 299
Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 300 EFQDFVNKCLIKNPAERADLKQLMVHAFI 328

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  ++ 
Sbjct: 110 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RRD 167
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +I 
Sbjct: 168 DLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRIS 222
Query: 123 R---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           R     P  +   +       D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 223 RVEFTFPDFVTEGAR------DLISRLLKHNPSQRPMLREVLEHPWITA 265

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 51/209 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 159
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 160 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
Query: 111 -----------------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQ 137
                                        D  P  A+F+    IV  PPP L  +  +S 
Sbjct: 214 MFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKL-PSGVFSL 272
Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 273 EFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 51/209 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 159
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 160 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
Query: 111 -----------------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQ 137
                                        D  P  A+F+    IV  PPP L  +  +S 
Sbjct: 214 MFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKL-PSGVFSL 272
Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 273 EFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 51/209 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 159
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 160 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
Query: 111 -----------------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQ 137
                                        D  P  A+F+    IV  PPP L  +  +S 
Sbjct: 214 MFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKL-PSGVFSL 272
Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 273 EFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 51/209 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM- 159
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 160 -ANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
Query: 111 -----------------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQ 137
                                        D  P  A+F+    IV  PPP L  +  +S 
Sbjct: 214 MFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKL-PSGVFSL 272
Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + DF+ +CL KNP  R  + +L+ H FI
Sbjct: 273 EFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 108 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 167
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 168 KXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 221
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 222 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 279
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 280 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 309

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 103 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 163 KXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 216
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 217 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 274
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 275 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 304

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 103 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 163 KXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 216
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 217 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 274
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 275 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 304

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 103 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF +    R LF++
Sbjct: 163 KXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFEL 216
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLHL 176
           +        R    S      +A  L+K+P+ R         E++EH F  S+   D+  
Sbjct: 217 ILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQ 274
Query: 177 STVNCQYKDQ---ELQTMHVEDLAALETIS 203
             +   +K Q   E+ T + +D    ++I+
Sbjct: 275 KKLLPPFKPQVTSEVDTRYFDDEFTAQSIT 304

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANT 57
           +SE  +  ++K+I+ G+ +LH+N+++H DL+  N+LL+     G++KIVDFG+SR+  + 
Sbjct: 128 VSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA 187
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPT 115
            + ++  +G+P ++APEI+       D      D+W +GI A  L     PF  ED   T
Sbjct: 188 CELRE-IMGTPEYLAPEILN-----YDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET 241
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
                 V N        S+ SQ   DFI   L KNPE RP     L H ++
Sbjct: 242 YLNISQV-NVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWL 291

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 17/175 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   A I+K++++G  +LH+++++HRDL+  N+LL   ++D  +KIVDFGLS       
Sbjct: 102 SEVDAAVIMKQVLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLSAH-FEVG 160
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  LG+  ++APE++R        YD + DVW+ G+    L  G PPF        L
Sbjct: 161 GKMKERLGTAYYIAPEVLR------KKYDEKCDVWSCGVILYILLCGYPPFGGQTDQEIL 214
Query: 119 FQIVRNP----PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
            ++ +      PP   + S+ ++  V  +   L   P  R    E L HP+I   
Sbjct: 215 KRVEKGKFSFDPPDWTQVSDEAKQLVKLM---LTYEPSKRISAEEALNHPWIVKF 266

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 21/174 (12%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRE-TANT 57
           SE   A I+K++ +G+ ++H+++++HRDL+  N+LL    KD ++KI+DFGLS     NT
Sbjct: 119 SEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT 178
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             K K  +G+  ++APE++R        YD + DVW+ G+    L  G PPF   +    
Sbjct: 179 --KMKDRIGTAYYIAPEVLR------GTYDEKCDVWSAGVILYILLSGTPPFYGKNE--- 227
Query: 118 LFQIVRNPPPGLYRAS--NW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            + I++    G Y      W   S    D I + L  +P  R   ++ LEHP+I
Sbjct: 228 -YDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 17/175 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   A I+K++++G  +LH+++++HRDL+  N+LL   ++D  +KIVDFGLS       
Sbjct: 119 SEVDAAVIMKQVLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLSAHF-EVG 177
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  LG+  ++APE++R        YD + DVW+ G+    L  G PPF        L
Sbjct: 178 GKMKERLGTAYYIAPEVLR------KKYDEKCDVWSCGVILYILLCGYPPFGGQTDQEIL 231
Query: 119 FQIVRNP----PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
            ++ +      PP   + S+ ++  V  +   L   P  R    E L HP+I   
Sbjct: 232 KRVEKGKFSFDPPDWTQVSDEAKQLVKLM---LTYEPSKRISAEEALNHPWIVKF 283

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           SE+  A  +K+I+  + +LHEN ++HRDL+  N+L      D  +KI DFGLS+   +  
Sbjct: 146 SERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV 205
Query: 59  DKKKTFLGSPSWMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
              KT  G+P + APEI+R C       Y   +D+W++GI    L  G  PF D    + 
Sbjct: 206 -LMKTVCGTPGYCAPEILRGC------AYGPEVDMWSVGIITYILLCGFEPFYDERGDQF 258
Query: 118 LFQIVRNPPPGLYRASNW----SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +F+ + N     Y  S W    S +  D + + +  +P+ R    + L+HP++T    N 
Sbjct: 259 MFRRILNCE--YYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAANF 316
Query: 174 LHLSTVNCQYKDQEL 188
           +H+ T   Q K QE 
Sbjct: 317 VHMDTA--QKKLQEF 329

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N+L++    VK+VDFG++R   ++ N+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNS 172
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R      D  D R DV++LG    E+  G+PPF    P   
Sbjct: 173 VXQTAAVIGTAQYLSPEQARG-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV 227
Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            +Q VR +P P   R    S      + + L KNPE+R
Sbjct: 228 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRE-TAN 56
            SE   A I+K++ +G+ ++H+++++HRDL+  N+LL    KD ++KI+DFGLS     N
Sbjct: 118 FSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN 177
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
           T  K K  +G+  ++APE++R        YD + DVW+ G+    L  G PPF   +   
Sbjct: 178 T--KMKDRIGTAYYIAPEVLR------GTYDEKCDVWSAGVILYILLSGTPPFYGKNE-- 227
Query: 117 ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             + I++    G Y      W   S    D I + L  +P  R   ++ LEHP+I
Sbjct: 228 --YDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRE-TAN 56
            SE   A I+K++ +G+ ++H+++++HRDL+  N+LL    KD ++KI+DFGLS     N
Sbjct: 118 FSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN 177
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
           T  K K  +G+  ++APE++R        YD + DVW+ G+    L  G PPF   +   
Sbjct: 178 T--KMKDRIGTAYYIAPEVLR------GTYDEKCDVWSAGVILYILLSGTPPFYGKNE-- 227
Query: 117 ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             + I++    G Y      W   S    D I + L  +P  R   ++ LEHP+I
Sbjct: 228 --YDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 21/183 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D 
Sbjct: 150 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 209
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------DM 112
             TF G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+        D 
Sbjct: 210 TSTFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ 264
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFI 166
           +    LFQ++      + R+   S      +   L K+P+ R         +++  HPF 
Sbjct: 265 NTEDYLFQVILEKQIRIPRS--LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 322
Query: 167 TSL 169
            ++
Sbjct: 323 RNV 325

>pdb|3GNI|B Chain B, Structure Of Strad And Mo25 Length = 389

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 57/221 (25%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---------KIVDFGLS 51
           M+E  IA+IL+ ++  + ++H    +HR ++ S++L++ DG+V          ++  G  
Sbjct: 125 MNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQR 184
Query: 52  RETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
           +   + F K    +    W++PE+++   + + GYD + D++++GITA EL +G  PF+D
Sbjct: 185 QRVVHDFPKYSVKVLP--WLSPEVLQ---QNLQGYDAKSDIYSVGITACELANGHVPFKD 239
Query: 112 MHPTRALFQIVRNPPPGLY--------------------------------RASN----- 134
           M  T+ L + +    P L                                 R SN     
Sbjct: 240 MPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPS 299
Query: 135 ------WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
                 +S H+  F+ +CL++NP+ RP  S LL H F   +
Sbjct: 300 HPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQI 340

>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 373

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 57/217 (26%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---------KIVDFGLS 51
           M+E  IA+IL+ ++  + ++H    +HR ++ S++L++ DG+V          ++  G  
Sbjct: 109 MNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQR 168
Query: 52  RETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
           +   + F K    +    W++PE+++   + + GYD + D++++GITA EL +G  PF+D
Sbjct: 169 QRVVHDFPKYSVKVLP--WLSPEVLQ---QNLQGYDAKSDIYSVGITACELANGHVPFKD 223
Query: 112 MHPTRALFQIVRNPPPGLY--------------------------------RASN----- 134
           M  T+ L + +    P L                                 R SN     
Sbjct: 224 MPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPS 283
Query: 135 ------WSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
                 +S H+  F+ +CL++NP+ RP  S LL H F
Sbjct: 284 HPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSF 320

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R      D  D R DV++LG    E+  G+PPF    P   
Sbjct: 173 VTQTAAVIGTAQYLSPEQARG-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV 227
Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            +Q VR +P P   R    S      + + L KNPE+R
Sbjct: 228 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE+    I++ ++  +  LH+ +++HRDL+  N+LL  D  +K+ DFG S +  +  +K
Sbjct: 121 LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ-LDPGEK 179
Query: 61  KKTFLGSPSWMAPEIMRCGHKEV-DGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
            ++  G+PS++APEI+ C   +   GY   +D+W+ G+    L  G PPF        L 
Sbjct: 180 LRSVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR 239
Query: 120 QIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
            I+  N   G     ++S    D ++  L   P+ R    E L HPF
Sbjct: 240 MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPF 286

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R      D  D R DV++LG    E+  G+PPF    P   
Sbjct: 173 VTQTAAVIGTAQYLSPEQARG-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV 227
Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            +Q VR +P P   R    S      + + L KNPE+R
Sbjct: 228 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R      D  D R DV++LG    E+  G+PPF    P   
Sbjct: 173 VTQTAAVIGTAQYLSPEQARG-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV 227
Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            +Q VR +P P   R    S      + + L KNPE+R
Sbjct: 228 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 130 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 189
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R      D  D R DV++LG    E+  G+PPF    P   
Sbjct: 190 VTQTAAVIGTAQYLSPEQARG-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV 244
Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            +Q VR +P P   R    S      + + L KNPE+R
Sbjct: 245 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 282

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 21/183 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D 
Sbjct: 118 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 177
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------DM 112
              F G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+        D 
Sbjct: 178 TSXFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ 232
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFI 166
           +    LFQ++      + R+ +     V  +   L K+P+ R         +++  HPF 
Sbjct: 233 NTEDYLFQVILEKQIRIPRSMSVKAASV--LKSFLNKDPKERLGCLPQTGFADIQGHPFF 290
Query: 167 TSL 169
            ++
Sbjct: 291 RNV 293

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R      D  D R DV++LG    E+  G+PPF    P   
Sbjct: 173 VTQTAAVIGTAQYLSPEQARG-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSV 227
Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
            +Q VR +P P   R    S      + + L KNPE+R
Sbjct: 228 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE+    I++ ++  +  LH+ +++HRDL+  N+LL  D  +K+ DFG S +  +  +K
Sbjct: 108 LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ-LDPGEK 166
Query: 61  KKTFLGSPSWMAPEIMRCGHKEV-DGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
            +   G+PS++APEI+ C   +   GY   +D+W+ G+    L  G PPF        L 
Sbjct: 167 LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR 226
Query: 120 QIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
            I+  N   G     ++S    D ++  L   P+ R    E L HPF
Sbjct: 227 MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPF 273

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D 
Sbjct: 103 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 162
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------DM 112
              F G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+        D 
Sbjct: 163 TSXFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ 217
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFI 166
           +    LFQ++      + R+   S      +   L K+P+ R         +++  HPF 
Sbjct: 218 NTEDYLFQVILEKQIRIPRS--LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 275
Query: 167 TSL 169
            ++
Sbjct: 276 RNV 278

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D 
Sbjct: 107 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 166
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------DM 112
              F G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+        D 
Sbjct: 167 TSXFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ 221
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPFI 166
           +    LFQ++      + R+   S      +   L K+P+ R         +++  HPF 
Sbjct: 222 NTEDYLFQVILEKQIRIPRS--LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 279
Query: 167 TSL 169
            ++
Sbjct: 280 RNV 282

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE+    I++ ++  +  LH+ +++HRDL+  N+LL  D  +K+ DFG S +  +  +K
Sbjct: 121 LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ-LDPGEK 179
Query: 61  KKTFLGSPSWMAPEIMRCGHKEV-DGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
            +   G+PS++APEI+ C   +   GY   +D+W+ G+    L  G PPF        L 
Sbjct: 180 LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR 239
Query: 120 QIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
            I+  N   G     ++S    D ++  L   P+ R    E L HPF
Sbjct: 240 MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPF 286

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
            F   EII G+ FLH   +++RDL+  N+LL KDG +KI DFG+ +E      K   F G
Sbjct: 121 TFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCG 180
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
           +P ++APEI+  G K    Y++ +D W+ G+   E+  G+ PF        LF  +R   
Sbjct: 181 TPDYIAPEIL-LGQK----YNHSVDWWSFGVLLYEMLIGQSPFHG-QDEEELFHSIRMDN 234
Query: 127 PGLYRASNW-SQHYVDFIAECLEKNPEHR-PYMSELLEHPFITSLPENDLHLSTVNCQYK 184
           P   R   W  +   D + +   + PE R     ++ +HP    +   +L    ++  ++
Sbjct: 235 PFYPR---WLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKEIDPPFR 291

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
            F   EII G+ FLH   +++RDL+  N+LL KDG +KI DFG+ +E      K   F G
Sbjct: 122 TFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCG 181
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
           +P ++APEI+  G K    Y++ +D W+ G+   E+  G+ PF        LF  +R   
Sbjct: 182 TPDYIAPEIL-LGQK----YNHSVDWWSFGVLLYEMLIGQSPFHG-QDEEELFHSIRMDN 235
Query: 127 PGLYRASNW-SQHYVDFIAECLEKNPEHR-PYMSELLEHPFITSLPENDLHLSTVNCQYK 184
           P   R   W  +   D + +   + PE R     ++ +HP    +   +L    ++  ++
Sbjct: 236 PFYPR---WLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKEIDPPFR 292

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 16/193 (8%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFDK 60
           +E  +   + EI+  +  LH+  +I+RD++  N+LL  +G V + DFGLS+E  A+  ++
Sbjct: 157 TEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER 216
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----EDMHPTR 116
              F G+  +MAP+I+R G     G+D  +D W+LG+   EL  G  PF    E      
Sbjct: 217 AYDFCGTIEYMAPDIVRGGD---SGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE 273
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR----PY-MSELLEHPFITSLPE 171
              +I+++ PP     S  ++   D I   L K+P+ R    P    E+ EH F   +  
Sbjct: 274 ISRRILKSEPPYPQEMSALAK---DLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINW 330
Query: 172 NDLHLSTVNCQYK 184
           +DL    V   +K
Sbjct: 331 DDLAAKKVPAPFK 343

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK--TFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+ E +      +     G
Sbjct: 125 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP- 125
           S  WMAPE++R   ++ + Y  + DV+A GI   EL  G+ P+ +++    + ++V    
Sbjct: 185 SILWMAPEVIRM--QDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGS 242
Query: 126 -PPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP    +L
Sbjct: 243 LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 94/173 (54%), Gaps = 19/173 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL-LT--KDGEVKIVDFGLSRETANTF 58
           +E+  + +++++++ + +LHEN ++HRDL+  N+L LT  ++ ++ I DFGLS+   N  
Sbjct: 104 TEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI 163
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               T  G+P ++APE++         Y   +D W++G+    L  G PPF +   ++ L
Sbjct: 164 --MSTACGTPGYVAPEVL-----AQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK-L 215
Query: 119 FQIVRNPPPGLYRASN--W---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           F+ ++    G Y   +  W   S+   DFI   LEK+P  R    + L HP+I
Sbjct: 216 FEKIKE---GYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWI 265

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK--TFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+ E +      +     G
Sbjct: 125 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP- 125
           S  WMAPE++R   ++ + Y  + DV+A GI   EL  G+ P+ +++    + ++V    
Sbjct: 185 SILWMAPEVIRM--QDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGS 242
Query: 126 -PPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP    +L
Sbjct: 243 LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL  +GE+KI DFG S    ++  ++ 
Sbjct: 111 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSS--RRT 168
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MHPTRALF 119
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   G PPFE        R + 
Sbjct: 169 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           ++    P  +   +       D I+  L+ N   R  ++E+LEHP+I +
Sbjct: 224 RVEFTFPDFVTEGAR------DLISRLLKHNASQRLTLAEVLEHPWIKA 266

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  + E+   + + H   VIHRD++  N+LL  +GE+KI DFG S    ++  ++ 
Sbjct: 111 EQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSS--RRD 168
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MHPTRALF 119
           T  G+  ++ PE++     E   +D ++D+W+LG+   E   G PPFE        R + 
Sbjct: 169 TLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           ++    P  +   +       D I+  L+ N   R  ++E+LEHP+I +
Sbjct: 224 RVEFTFPDFVTEGAR------DLISRLLKHNASQRLTLAEVLEHPWIKA 266

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F L EI   +  LH+  +I+RDL+  N++L   G VK+ DFGL +E+ +      
Sbjct: 120 EDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTH 179
Query: 63  TFLGSPSWMAPEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           TF G+  +MAPEI MR GH      +  +D W+LG    ++  G PPF   +  + + +I
Sbjct: 180 TFCGTIEYMAPEILMRSGH------NRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKI 233
Query: 122 VR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPEND 173
           ++   N PP L      +Q   D + + L++N   R         E+  HPF   +   +
Sbjct: 234 LKCKLNLPPYL------TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEE 287
Query: 174 LHLSTVNCQYK 184
           L    V   +K
Sbjct: 288 LLARKVEPPFK 298

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 55/201 (27%)
Query: 13  IITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++ G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++     +F+G+ S+M
Sbjct: 123 VLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM--ANSFVGTRSYM 180
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------------------- 110
           APE ++  H     Y  + D+W++G++ +EL  G+ P                       
Sbjct: 181 APERLQGTH-----YSVQSDIWSMGLSLVELAVGRYPIPPPDAKELEAIFGRPVVDGEEG 235
Query: 111 ---------------------DMHPTRALFQ----IVRNPPPGLYRASNWSQHYVDFIAE 145
                                D  P  A+F+    IV  PPP L     ++  + +F+ +
Sbjct: 236 EPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGV-FTPDFQEFVNK 294
Query: 146 CLEKNPEHRPYMSELLEHPFI 166
           CL KNP  R  +  L  H FI
Sbjct: 295 CLIKNPAERADLKMLTNHTFI 315

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   A I++++++G+ ++H+N ++HRDL+  N+LL   +KD  ++I+DFGLS     + 
Sbjct: 124 SEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS- 182
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  +G+  ++APE++         YD + DVW+ G+    L  G PPF   +     
Sbjct: 183 KKMKDKIGTAYYIAPEVLH------GTYDEKCDVWSTGVILYILLSGCPPFNGANE---- 232
Query: 119 FQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           + I++    G Y      W   S+   D I + L   P  R    + L+H +I +
Sbjct: 233 YDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQT 287

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH E +V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 246 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 305
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF
Sbjct: 306 MKTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPF 349

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH E +V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 249 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 308
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            KTF G+P ++APE++     E + Y   +D W LG+   E+  G+ PF
Sbjct: 309 MKTFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPF 352

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   A I++++++G+ ++H+N ++HRDL+  N+LL   +KD  ++I+DFGLS     + 
Sbjct: 147 SEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS- 205
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  +G+  ++APE++         YD + DVW+ G+    L  G PPF   +     
Sbjct: 206 KKMKDKIGTAYYIAPEVLH------GTYDEKCDVWSTGVILYILLSGCPPFNGANE---- 255
Query: 119 FQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           + I++    G Y      W   S+   D I + L   P  R    + L+H +I +
Sbjct: 256 YDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQT 310

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   A I++++++G+ ++H+N ++HRDL+  N+LL   +KD  ++I+DFGLS     + 
Sbjct: 148 SEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS- 206
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  +G+  ++APE++         YD + DVW+ G+    L  G PPF   +     
Sbjct: 207 KKMKDKIGTAYYIAPEVLH------GTYDEKCDVWSTGVILYILLSGCPPFNGANE---- 256
Query: 119 FQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           + I++    G Y      W   S+   D I + L   P  R    + L+H +I +
Sbjct: 257 YDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQT 311

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 25/199 (12%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  ++  H+  V+HRDL+  N+LL    K   VK+ DFGL+ E     
Sbjct: 119 SEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ 178
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                F G+P +++PE++R      D Y   +D+WA G+    L  G PPF D    R L
Sbjct: 179 QAWFGFAGTPGYLSPEVLR-----KDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR-L 232
Query: 119 FQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +Q ++    G Y   +  W   +    D I + L  NP  R   +E L+HP+I+      
Sbjct: 233 YQQIK---AGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWIS------ 283
Query: 174 LHLSTV-NCQYKDQELQTM 191
            H STV +C ++ + +  +
Sbjct: 284 -HRSTVASCMHRQETVDCL 301

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK--TFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+ E +      +     G
Sbjct: 109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSG 168
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 169 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 226
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 227 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E    F   +I++G+  LH+ ++I+RDL+  NVLL  DG V+I D GL+ E      K
Sbjct: 286 FQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK 345
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH------- 113
            K + G+P +MAPE++  G +    YD  +D +ALG+T  E+   + PF           
Sbjct: 346 TKGYAGTPGFMAPELL-LGEE----YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE 400
Query: 114 -PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE-----LLEHPFIT 167
              R L Q V  P         +S    DF    L+K+PE R    +     L  HP   
Sbjct: 401 LKQRVLEQAVTYP-------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 168 SLPENDLHLSTVNCQY--KDQELQTMHVEDLAALETI 202
            +    L    +   +    + +   +++D+ A  T+
Sbjct: 454 DISWRQLEAGMLTPPFVPDSRTVYAKNIQDVGAFSTV 490

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E    F   +I++G+  LH+ ++I+RDL+  NVLL  DG V+I D GL+ E      K
Sbjct: 286 FQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK 345
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH------- 113
            K + G+P +MAPE++  G +    YD  +D +ALG+T  E+   + PF           
Sbjct: 346 TKGYAGTPGFMAPELL-LGEE----YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE 400
Query: 114 -PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE-----LLEHPFIT 167
              R L Q V  P         +S    DF    L+K+PE R    +     L  HP   
Sbjct: 401 LKQRVLEQAVTYP-------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 168 SLPENDLHLSTVNCQY--KDQELQTMHVEDLAALETI 202
            +    L    +   +    + +   +++D+ A  T+
Sbjct: 454 DISWRQLEAGMLTPPFVPDSRTVYAKNIQDVGAFSTV 490

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK--TFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+ E +      +     G
Sbjct: 129 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSG 188
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 189 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 246
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 247 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 284

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK--TFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+ E +      +     G
Sbjct: 137 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSG 196
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 197 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 254
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 255 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 292

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E    F   +I++G+  LH+ ++I+RDL+  NVLL  DG V+I D GL+ E      K
Sbjct: 286 FQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK 345
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH------- 113
            K + G+P +MAPE++  G +    YD  +D +ALG+T  E+   + PF           
Sbjct: 346 TKGYAGTPGFMAPELL-LGEE----YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE 400
Query: 114 -PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE-----LLEHPFIT 167
              R L Q V  P         +S    DF    L+K+PE R    +     L  HP   
Sbjct: 401 LKQRVLEQAVTYP-------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 168 SLPENDLHLSTVNCQY--KDQELQTMHVEDLAALETI 202
            +    L    +   +    + +   +++D+ A  T+
Sbjct: 454 DISWRQLEAGMLTPPFVPDSRTVYAKNIQDVGAFSTV 490

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   A I++++++G+ ++H+N ++HRDL+  N+LL   +KD  ++I+DFGLS     + 
Sbjct: 130 SEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS- 188
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  +G+  ++APE++         YD + DVW+ G+    L  G PPF   +     
Sbjct: 189 KKMKDKIGTAYYIAPEVLH------GTYDEKCDVWSTGVILYILLSGCPPFNGANE---- 238
Query: 119 FQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           + I++    G Y      W   S+   D I + L   P  R    + L+H +I +
Sbjct: 239 YDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQT 293

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 19/176 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANT 57
            SE   A I++++++G+ + H+N ++HRDL+  N+LL   +KD  ++I+DFGLS     +
Sbjct: 123 FSEVDAARIIRQVLSGITYXHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS 182
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             K K  +G+  ++APE++         YD + DVW+ G+    L  G PPF   +    
Sbjct: 183 -KKXKDKIGTAYYIAPEVLHG------TYDEKCDVWSTGVILYILLSGCPPFNGANE--- 232
Query: 118 LFQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            + I++    G Y      W   S+   D I + L   P  R    + L+H +I +
Sbjct: 233 -YDILKKVEKGKYTFELPQWKKVSESAKDLIRKXLTYVPSXRISARDALDHEWIQT 287

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 113 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSG 172
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP- 125
           S  WMAPE++R   ++ + Y  + DV+A GI   EL  G+ P+ +++    + ++V    
Sbjct: 173 SILWMAPEVIRM--QDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGS 230
Query: 126 -PPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP    +L
Sbjct: 231 LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 268

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E    F   +I++G+  LH+ ++I+RDL+  NVLL  DG V+I D GL+ E      K
Sbjct: 286 FQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK 345
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH------- 113
            K + G+P +MAPE++  G +    YD  +D +ALG+T  E+   + PF           
Sbjct: 346 TKGYAGTPGFMAPELL-LGEE----YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE 400
Query: 114 -PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE-----LLEHPFIT 167
              R L Q V  P         +S    DF    L+K+PE R    +     L  HP   
Sbjct: 401 LKQRVLEQAVTYP-------DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFR 453
Query: 168 SLPENDLHLSTVNCQY--KDQELQTMHVEDLAALETI 202
            +    L    +   +    + +    ++D+ A  T+
Sbjct: 454 DISWRQLEAGMLTPPFVPDSRTVYAKCIQDVGAFSTV 490

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH E +V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 107 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 166
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF
Sbjct: 167 MKXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPF 210

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH E +V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 106 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 165
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF
Sbjct: 166 MKXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPF 209

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F L EI   +  LH+  +I+RDL+  N++L   G VK+ DFGL +E+ +      
Sbjct: 120 EDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTH 179
Query: 63  TFLGSPSWMAPEI-MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            F G+  +MAPEI MR GH      +  +D W+LG    ++  G PPF   +  + + +I
Sbjct: 180 XFCGTIEYMAPEILMRSGH------NRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKI 233
Query: 122 VR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPEND 173
           ++   N PP L      +Q   D + + L++N   R         E+  HPF   +   +
Sbjct: 234 LKCKLNLPPYL------TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEE 287
Query: 174 LHLSTVNCQYK 184
           L    V   +K
Sbjct: 288 LLARKVEPPFK 298

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2   SEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH E +V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 108 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 167
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            K F G+P ++APE++     E + Y   +D W LG+   E+  G+ PF
Sbjct: 168 MKXFCGTPEYLAPEVL-----EDNDYGRAVDWWGLGVVMYEMMCGRLPF 211

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 20/194 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  +   H N ++HRDL+  N+LL   +K   VK+ DFGL+ E     
Sbjct: 101 SEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQ 160
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                F G+P +++PE++R      D Y   +D+WA G+    L  G PPF D    R L
Sbjct: 161 QAWFGFAGTPGYLSPEVLR-----KDPYGKPVDMWACGVILYILLVGYPPFWDEDQHR-L 214
Query: 119 FQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT--SLPE 171
           +Q ++    G Y   +  W   +    D I + L  NP  R   SE L+HP+I   S   
Sbjct: 215 YQQIK---AGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVA 271
Query: 172 NDLHLS-TVNCQYK 184
           + +H   TV+C  K
Sbjct: 272 SMMHRQETVDCLKK 285

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E+ +   + E++  + +L    +IHRD++  N+LL + G V I DF     L RET  T 
Sbjct: 114 EETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQIT- 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               T  G+  +MAPE+     ++  GY   +D W+LG+TA EL  G+ P+     T + 
Sbjct: 173 ----TMAGTKPYMAPEMF--SSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSK 226
Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-PYMSELLEHPFITSL 169
             +       +   S WSQ  V  + + LE NP+ R   +S++   P++  +
Sbjct: 227 EIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDI 278

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 17/180 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL---LTKDGEVKIVDFGLSRETANTF 58
           +E+  + ++ +++  + +LH+  ++HRDL+  N+L   L +D ++ I DFGLS+   +  
Sbjct: 114 TERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               T  G+P ++APE++         Y   +D W++G+ A  L  G PPF D +  +  
Sbjct: 173 SVLSTACGTPGYVAPEVL-----AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI---TSLPEN 172
            QI++      + +  W   S    DFI   +EK+PE R    + L+HP+I   T+L +N
Sbjct: 228 EQILKAEYE--FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKN 285

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 114 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 173
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 174 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 231
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 232 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 269

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 111 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 170
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 171 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 228
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 229 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 266

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 17/180 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL---LTKDGEVKIVDFGLSRETANTF 58
           +E+  + ++ +++  + +LH+  ++HRDL+  N+L   L +D ++ I DFGLS+   +  
Sbjct: 114 TERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               T  G+P ++APE++         Y   +D W++G+ A  L  G PPF D +  +  
Sbjct: 173 SVLSTACGTPGYVAPEVL-----AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI---TSLPEN 172
            QI++      + +  W   S    DFI   +EK+PE R    + L+HP+I   T+L +N
Sbjct: 228 EQILKAEYE--FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKN 285

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 17/180 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL---LTKDGEVKIVDFGLSRETANTF 58
           +E+  + ++ +++  + +LH+  ++HRDL+  N+L   L +D ++ I DFGLS+   +  
Sbjct: 114 TERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               T  G+P ++APE++    K    Y   +D W++G+ A  L  G PPF D +  +  
Sbjct: 173 SVLSTACGTPGYVAPEVL--AQKP---YSKAVDCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI---TSLPEN 172
            QI++      + +  W   S    DFI   +EK+PE R    + L+HP+I   T+L +N
Sbjct: 228 EQILKAEYE--FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKN 285

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 114 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 173
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 174 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 231
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 232 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 269

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 168
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 169 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 226
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 227 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 168
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 169 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 226
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 227 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 137 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 196
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 197 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 254
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 255 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 292

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS--RETANTFDKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+  +   +   + +   G
Sbjct: 136 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSG 195
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRN- 124
           S  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ ++ +  + +F + R  
Sbjct: 196 SILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY 253
Query: 125 PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             P L +  SN  +     +AECL+K  + RP   ++L
Sbjct: 254 LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 291

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 20/194 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  +   H N ++HRDL+  N+LL   +K   VK+ DFGL+ E     
Sbjct: 101 SEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQ 160
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                F G+P +++PE++R      D Y   +D+WA G+    L  G PPF D    R L
Sbjct: 161 QAWFGFAGTPGYLSPEVLR-----KDPYGKPVDMWACGVILYILLVGYPPFWDEDQHR-L 214
Query: 119 FQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT--SLPE 171
           +Q ++    G Y   +  W   +    D I + L  NP  R   SE L+HP+I   S   
Sbjct: 215 YQQIK---AGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVA 271
Query: 172 NDLHLS-TVNCQYK 184
           + +H   TV+C  K
Sbjct: 272 SMMHRQETVDCLKK 285

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 25/199 (12%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  ++  H+  V+HR+L+  N+LL    K   VK+ DFGL+ E     
Sbjct: 108 SEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ 167
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                F G+P +++PE++R      D Y   +D+WA G+    L  G PPF D    R L
Sbjct: 168 QAWFGFAGTPGYLSPEVLR-----KDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR-L 221
Query: 119 FQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +Q ++    G Y   +  W   +    D I + L  NP  R   +E L+HP+I+      
Sbjct: 222 YQQIK---AGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWIS------ 272
Query: 174 LHLSTV-NCQYKDQELQTM 191
            H STV +C ++ + +  +
Sbjct: 273 -HRSTVASCMHRQETVDCL 290

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 17/180 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL---LTKDGEVKIVDFGLSRETANTF 58
           +E+  + ++ +++  + +LH+  ++HRDL+  N+L   L +D ++ I DFGLS+   +  
Sbjct: 114 TERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK-MEDPG 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               T  G+P ++APE++         Y   +D W++G+ A  L  G PPF D +  +  
Sbjct: 173 SVLSTACGTPGYVAPEVL-----AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLF 227
Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI---TSLPEN 172
            QI++      + +  W   S    DFI   +EK+PE R    + L+HP+I   T+L +N
Sbjct: 228 EQILKAEYE--FDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKN 285

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-D 59
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +
Sbjct: 110 MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEF--TFGN 167
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K  TF GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      
Sbjct: 168 KLDTFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRE 223
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +++R    G YR   + S    + + + L  NP  R  + ++++  ++    E+D
Sbjct: 224 RVLR----GKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDD 274

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-D 59
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +
Sbjct: 110 MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEF--TFGN 167
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K  TF GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      
Sbjct: 168 KLDTFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRE 223
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +++R    G YR   + S    + + + L  NP  R  + ++++  ++    E+D
Sbjct: 224 RVLR----GKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDD 274

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-D 59
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +
Sbjct: 110 MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEF--TFGN 167
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K  TF GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      
Sbjct: 168 KLDTFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRE 223
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +++R    G YR   + S    + + + L  NP  R  + ++++  ++    E+D
Sbjct: 224 RVLR----GKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDD 274

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           ++  GM +LH  +  ++HR+L+  N+L+ K   VK+ DFGLSR  A+TF   K+  G+P 
Sbjct: 145 DVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPE 204
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL----FQIVRNP 125
           WMAPE++R      +  + + DV++ G+   EL   + P+ +++P + +    F+  R  
Sbjct: 205 WMAPEVLR-----DEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKR-- 257
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE--HPFITS 168
              L    N +      I  C    P  RP  + +++   P I S
Sbjct: 258 ---LEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIV--DFGLSRETANTF 58
           +E+  + ++++++  + +LH   ++HRDL+  N+L  ++D E KI+  DFGLS+      
Sbjct: 118 TEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKG- 176
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           D   T  G+P ++APE++         Y   +D W++G+ A  L  G PPF D + ++  
Sbjct: 177 DVMSTACGTPGYVAPEVL-----AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLF 231
Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI---TSLPEN 172
            QI++      + +  W   S    DFI   +EK+P  R    +   HP+I   T+L +N
Sbjct: 232 EQILKAEYE--FDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKN 289

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +II G+ F H +++IHRD++  N+L+++ G VK+ DFG +R  A   +     + +  
Sbjct: 130 LFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRW 189
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-------------------- 109
           + APE++    K    Y   +DVWA+G    E+  G+P F                    
Sbjct: 190 YRAPELLVGDVK----YGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLI 245
Query: 110 ---EDMHPTRALFQIVRNP-----PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
              +++     +F  VR P      P   R    S+  +D   +CL  +P+ RP+ +ELL
Sbjct: 246 PRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELL 305
Query: 162 EHPF 165
            H F
Sbjct: 306 HHDF 309

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-D 59
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +
Sbjct: 103 MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEF--TFGN 160
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K  TF GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      
Sbjct: 161 KLDTFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRE 216
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +++R    G YR   + S    + + + L  NP  R  + ++++  ++    E+D
Sbjct: 217 RVLR----GKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDD 267

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  ++E+   + + HE  VIHRD++  N+L+   GE+KI DFG S    +   +++
Sbjct: 114 EQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL--RRR 171
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALF 119
              G+  ++ PE++     E   +D ++D+W  G+   E   G PPF+    T   R + 
Sbjct: 172 XMCGTLDYLPPEMI-----EGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIV 226
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            +    PP L   S       D I++ L  +P  R  +  ++EHP++ +
Sbjct: 227 NVDLKFPPFLSDGSK------DLISKLLRYHPPQRLPLKGVMEHPWVKA 269

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A  ++E+   + + HE  VIHRD++  N+L+   GE+KI DFG S    +   +++
Sbjct: 113 EQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL--RRR 170
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALF 119
              G+  ++ PE++     E   +D ++D+W  G+   E   G PPF+    T   R + 
Sbjct: 171 XMCGTLDYLPPEMI-----EGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIV 225
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            +    PP L   S       D I++ L  +P  R  +  ++EHP++ +
Sbjct: 226 NVDLKFPPFLSDGSK------DLISKLLRYHPPQRLPLKGVMEHPWVKA 268

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 111 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 171 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 226
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 227 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 278

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 111 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 171 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 226
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 227 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 278

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 110 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 169
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 170 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 225
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 226 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 277

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 111 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 171 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 226
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 227 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 278

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 250 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 309
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 310 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 365
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 366 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 417

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 10/174 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E      K
Sbjct: 108 MKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFT-VGGK 166
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             TF GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      +
Sbjct: 167 LDTFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRER 222
Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           ++R    G YR   + S    + +   L  NP  R  + ++++  +I +  E D
Sbjct: 223 VLR----GKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEED 272

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EI  G+ FLH+  +I+RDL+  NV+L  +G +KI DFG+ +E        
Sbjct: 118 KEPQAVFYAAEISIGLFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTT 177
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           + F G+P ++APEI+         Y   +D WA G+   E+  G+PPF+
Sbjct: 178 REFCGTPDYIAPEII-----AYQPYGKSVDWWAYGVLLYEMLAGQPPFD 221

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 117 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 176
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 177 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 232
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 233 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 284

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E H  F   EI  G+ FL    +I+RDL+  NV+L  +G +KI DFG+ +E       
Sbjct: 118 FKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT 177
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
            K F G+P ++APEI+         Y   +D WA G+   E+  G+ PFE
Sbjct: 178 TKXFCGTPDYIAPEII-----AYQPYGKSVDWWAFGVLLYEMLAGQAPFE 222

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E H  F   EI  G+ FL    +I+RDL+  NV+L  +G +KI DFG+ +E       
Sbjct: 439 FKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT 498
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
            K F G+P ++APEI+         Y   +D WA G+   E+  G+ PFE
Sbjct: 499 TKXFCGTPDYIAPEII-----AYQPYGKSVDWWAFGVLLYEMLAGQAPFE 543

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 236 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 295
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  G+P+++APE++        GY+  +D W+LG+       G PPF + H T+ 
Sbjct: 296 -SLMRTLCGTPTYLAPEVLV--SVGTAGYNRAVDCWSLGVILFICLSGYPPFSE-HRTQV 351
Query: 118 LF--QIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               QI     N  P ++  +  S+  +D + + L  +P+ R    E L HP++
Sbjct: 352 SLKDQITSGKYNFIPEVW--AEVSEKALDLVKKLLVVDPKARFTTEEALRHPWL 403

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E+  A I+++I T + FLH +++ HRD++  N+L T   KD  +K+ DFG ++ET  T 
Sbjct: 126 TEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKET--TQ 183
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +  +T   +P ++APE++       + YD   D+W+LG+    L  G PPF         
Sbjct: 184 NALQTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS 238
Query: 119 FQIVRNPPPGLYRASN--WSQHYVD---FIAECLEKNPEHRPYMSELLEHPFITS---LP 170
             + R    G Y   N  WS+   D    I   L+ +P  R  +++ + HP+I     +P
Sbjct: 239 PGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSMVVP 298
Query: 171 ENDLHLSTVNCQYKD 185
           +  LH + V  + KD
Sbjct: 299 QTPLHTARVLQEDKD 313

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              F+ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MAGFVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 269

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           ++  GM +LH  +  ++HRDL+  N+L+ K   VK+ DFGLSR  A+ F   K   G+P 
Sbjct: 145 DVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPE 204
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL----FQIVRNP 125
           WMAPE++R      +  + + DV++ G+   EL   + P+ +++P + +    F+  R  
Sbjct: 205 WMAPEVLR-----DEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKR-- 257
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE--HPFITS 168
              L    N +      I  C    P  RP  + +++   P I S
Sbjct: 258 ---LEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 151 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 207
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              ++ +  + APEIM         Y+  +D+W++G    EL  G+  F        L Q
Sbjct: 208 MTGYVATRWYRAPEIMLNWMH----YNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQ 263
Query: 121 IVR---NPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           I+R    PP  +     S+ +++Y++ + +  ++N
Sbjct: 264 IMRLTGTPPASVISRMPSHEARNYINSLPQMPKRN 298

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E+  A I+++I T + FLH +++ HRD++  N+L T   KD  +K+ DFG ++ET  T 
Sbjct: 107 TEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKET--TQ 164
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +  +T   +P ++APE++       + YD   D+W+LG+    L  G PPF         
Sbjct: 165 NALQTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS 219
Query: 119 FQIVRNPPPGLYRASN--WSQHYVD---FIAECLEKNPEHRPYMSELLEHPFITS---LP 170
             + R    G Y   N  WS+   D    I   L+ +P  R  +++ + HP+I     +P
Sbjct: 220 PGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSMVVP 279
Query: 171 ENDLHLSTVNCQYKD 185
           +  LH + V  + KD
Sbjct: 280 QTPLHTARVLQEDKD 294

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 118 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 174
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              F+ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 175 MAGFVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 230
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 231 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 265

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R TA   D+
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA---DE 185
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 186 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 241
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 242 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 276

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R TA   D+
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA---DE 185
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 186 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 241
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 242 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 276

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R TA   D+
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA---DE 185
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 186 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 241
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 242 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 276

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-D 59
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +
Sbjct: 110 MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEF--TFGN 167
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K   F GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      
Sbjct: 168 KLDEFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRE 223
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +++R    G YR   + S    + + + L  NP  R  + ++++  ++    E+D
Sbjct: 224 RVLR----GKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDD 274

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 21/176 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  ++  H+  V+HRDL+  N+LL    K   VK+ DFGL+ E     
Sbjct: 101 SEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQ 160
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTR 116
                F G+P +++PE++R      + Y   +D+WA G+    L  G PPF  ED H   
Sbjct: 161 QAWFGFAGTPGYLSPEVLR-----KEAYGKPVDIWACGVILYILLVGYPPFWDEDQHK-- 213
Query: 117 ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            L+Q ++    G Y   +  W   +    + I + L  NP  R    E L+HP++ 
Sbjct: 214 -LYQQIK---AGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVC 265

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-D 59
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +
Sbjct: 110 MKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEF--TFGN 167
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K   F G+P + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      
Sbjct: 168 KLDAFCGAPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRE 223
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           +++R    G YR   + S    + + + L  NP  R  + ++++  ++    E+D
Sbjct: 224 RVLR----GKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDD 274

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI + + +LH  ++++RDL+  N+LL   G + + DFGL +E         
Sbjct: 138 EPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTS 197
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           TF G+P ++APE++   HK+   YD  +D W LG    E+  G PPF
Sbjct: 198 TFCGTPEYLAPEVL---HKQ--PYDRTVDWWCLGAVLYEMLYGLPPF 239

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 13/133 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           M E+      ++I++ + + H+ +++HRDL+  N+LL  D  +KI DFG S E    N  
Sbjct: 111 MKEKEARAKFRQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFSNEFTVGNKL 170
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           D   TF GSP + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +     
Sbjct: 171 D---TFCGSPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELR 223
Query: 119 FQIVRNPPPGLYR 131
            +++R    G YR
Sbjct: 224 ERVLR----GKYR 232

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 269

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 132 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 188
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 189 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 244
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 245 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 279

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+ + F L E+   +  LH   +I+RDL+  N+LL ++G +K+ DFGLS+E+ +   K 
Sbjct: 124 TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA 183
Query: 62  KTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            +F G+  +MAPE++ R GH +        D W+ G+   E+  G  PF+       +  
Sbjct: 184 YSFCGTVEYMAPEVVNRRGHTQ------SADWWSFGVLMFEMLTGTLPFQGKDRKETMTM 237
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           I++     L      S      +    ++NP +R       + E+  H F +++  N L+
Sbjct: 238 ILKAK---LGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLY 294
Query: 176 LSTVNCQYK 184
              ++  +K
Sbjct: 295 RREIHPPFK 303

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 128 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 184
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 185 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 240
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 241 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 275

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EII+ ++FLH+  +I+RDL+  NVLL  +G  K+ DFG+ +E         
Sbjct: 123 EARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTA 182
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           TF G+P ++APEI+    +E+  Y   +D WA+G+   E+  G  PFE
Sbjct: 183 TFCGTPDYIAPEIL----QEM-LYGPAVDWWAMGVLLYEMLCGHAPFE 225

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+ + F L E+   +  LH   +I+RDL+  N+LL ++G +K+ DFGLS+E+ +   K 
Sbjct: 124 TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA 183
Query: 62  KTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            +F G+  +MAPE++ R GH +        D W+ G+   E+  G  PF+       +  
Sbjct: 184 YSFCGTVEYMAPEVVNRRGHTQ------SADWWSFGVLMFEMLTGTLPFQGKDRKETMTM 237
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           I++     L      S      +    ++NP +R       + E+  H F +++  N L+
Sbjct: 238 ILKAK---LGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLY 294
Query: 176 LSTVNCQYK 184
              ++  +K
Sbjct: 295 RREIHPPFK 303

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+ + F L E+   +  LH   +I+RDL+  N+LL ++G +K+ DFGLS+E+ +   K 
Sbjct: 125 TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA 184
Query: 62  KTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            +F G+  +MAPE++ R GH +        D W+ G+   E+  G  PF+       +  
Sbjct: 185 YSFCGTVEYMAPEVVNRRGHTQ------SADWWSFGVLMFEMLTGTLPFQGKDRKETMTM 238
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           I++     L      S      +    ++NP +R       + E+  H F +++  N L+
Sbjct: 239 ILKAK---LGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLY 295
Query: 176 LSTVNCQYK 184
              ++  +K
Sbjct: 296 RREIHPPFK 304

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 141 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 197
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 198 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 253
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 254 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 288

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S++H+ F++ +++ G+ ++H   +IHRDL+ SNV + +D E++I+DFGL+R+     D+
Sbjct: 128 LSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQA----DE 183
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTR 116
           + T   +  W  APEIM         Y+  +D+W++G    EL  GK   P  + +   +
Sbjct: 184 EMTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLK 239
Query: 117 ALFQIVRNPPP 127
            + ++V  P P
Sbjct: 240 RIMEVVGTPSP 250

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 142 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 198
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 199 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 254
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 255 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 289

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 118 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 174
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 175 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 230
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 231 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 265

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S++H+ F++ +++ G+ ++H   +IHRDL+ SNV + +D E++I+DFGL+R+     D+
Sbjct: 128 LSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQA----DE 183
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTR 116
           + T   +  W  APEIM         Y+  +D+W++G    EL  GK   P  + +   +
Sbjct: 184 EMTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLK 239
Query: 117 ALFQIVRNPPP 127
            + ++V  P P
Sbjct: 240 RIMEVVGTPSP 250

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+ + F L E+  G+  LH   +I+RDL+  N+LL ++G +K+ DFGLS+E  +   K 
Sbjct: 128 TEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKA 187
Query: 62  KTFLGSPSWMAPEIM-RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--DMHPTRAL 118
            +F G+  +MAPE++ R GH       +  D W+ G+   E+  G  PF+  D   T  L
Sbjct: 188 YSFCGTVEYMAPEVVNRQGH------SHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTL 241
Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPEND 173
               +   P        S      +    ++NP +R         E+  H F +++  N 
Sbjct: 242 ILKAKLGMPQFLSTEAQS-----LLRALFKRNPANRLGSGPDGAEEIKRHVFYSTIDWNK 296
Query: 174 LHLSTVNCQYK 184
           L+   +   +K
Sbjct: 297 LYRREIKPPFK 307

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              F+ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MAGFVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 118 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 174
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 175 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 230
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 231 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 265

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNAMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T  G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWTLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E      K
Sbjct: 111 MKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEF-TVGGK 169
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              F G+P + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      +
Sbjct: 170 LDAFCGAPPYAAPELFQ--GKKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRER 225
Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           ++R    G YR   + S    + +   L  NP  R  + ++++  +I +  E D
Sbjct: 226 VLR----GKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEED 275

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 124 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T  G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 181 TWTLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 235
Query: 121 IV 122
           IV
Sbjct: 236 IV 237

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFGL++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S++H+ F++ +++ G+ ++H   +IHRDL+ SNV + +D E++I+DFGL+R+     D+
Sbjct: 120 LSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQA----DE 175
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTR 116
           + T   +  W  APEIM         Y+  +D+W++G    EL  GK   P  + +   +
Sbjct: 176 EMTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLK 231
Query: 117 ALFQIVRNPPP 127
            + ++V  P P
Sbjct: 232 RIMEVVGTPSP 242

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 38/200 (19%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S QHI + +  I+ G+  LHE  V+HRDL   N+LL  + ++ I DF L+RE  +T D 
Sbjct: 131 ISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLARE--DTADA 188
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD--------------- 104
            KT   +  W  APE++     +  G+   +D+W+ G    E+ +               
Sbjct: 189 NKTHYVTHRWYRAPELV----MQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN 244
Query: 105 ------GKPPFED--MHPTRALFQIVRNPPPGLYRASNWSQHY-------VDFIAECLEK 149
                 G P  ED  M  + +    +RN    +  A  W+          +D IA+ LE 
Sbjct: 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNV-PARAWTAVVPTADPVALDLIAKMLEF 303
Query: 150 NPEHRPYMSELLEHPFITSL 169
           NP+ R    + L HP+  SL
Sbjct: 304 NPQRRISTEQALRHPYFESL 323

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 38/200 (19%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S QHI + +  I+ G+  LHE  V+HRDL   N+LL  + ++ I DF L+RE  +T D 
Sbjct: 131 ISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLARE--DTADA 188
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD--------------- 104
            KT   +  W  APE++     +  G+   +D+W+ G    E+ +               
Sbjct: 189 NKTHYVTHRWYRAPELV----MQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN 244
Query: 105 ------GKPPFED--MHPTRALFQIVRNPPPGLYRASNWSQHY-------VDFIAECLEK 149
                 G P  ED  M  + +    +RN    +  A  W+          +D IA+ LE 
Sbjct: 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNV-PARAWTAVVPTADPVALDLIAKMLEF 303
Query: 150 NPEHRPYMSELLEHPFITSL 169
           NP+ R    + L HP+  SL
Sbjct: 304 NPQRRISTEQALRHPYFESL 323

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 124 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARHTD---DE 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 181 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 236
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 237 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 271

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 128 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARHTD---DE 184
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 185 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 240
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 241 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 275

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +K+ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +K+ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 145 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 201
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 202 MXGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 257
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 258 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 292

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++        
Sbjct: 159 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGA--- 215
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T  G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 216 TWTLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 270
Query: 121 IV 122
           IV
Sbjct: 271 IV 272

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +K+ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +K+ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLCRHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE----VKIVDFGLSRETANT 57
           SE+  +F+L  I   + +LH   V+HRDL+ SN+L   +      ++I DFG +++    
Sbjct: 119 SEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAE 178
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                T   + +++APE+++       GYD   D+W+LGI    +  G  PF +  P+  
Sbjct: 179 NGLLMTPCYTANFVAPEVLK-----RQGYDEGCDIWSLGILLYTMLAGYTPFAN-GPSDT 232
Query: 118 LFQIVRNPPPGLYRAS--NW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT---SL 169
             +I+     G +  S  NW   S+   D +++ L  +P  R    ++L+HP++T    L
Sbjct: 233 PEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKL 292
Query: 170 PENDL 174
           P++ L
Sbjct: 293 PQSQL 297

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 124 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 181 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 236
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 237 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 271

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 128 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 184
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 185 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 240
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 241 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 275

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 185
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 186 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 241
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 242 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 276

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 128 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 184
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 185 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 240
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 241 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 275

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 124 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 181 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 236
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 237 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 271

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 133 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTD---DE 189
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 190 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 245
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 246 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 280

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 145 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 201
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 202 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 257
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 258 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 292

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 127 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 183
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 184 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 239
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 240 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 274

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 133 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 189
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 190 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 245
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 246 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 280

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 121 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 177
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 178 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 233
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 234 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 268

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 134 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 190
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 191 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 246
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 247 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 281

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 134 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 190
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 191 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 246
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 247 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 281

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 134 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 190
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 191 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 246
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 247 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 281

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 127 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 183
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 184 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 239
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 240 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 274

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 35/198 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 123 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDH 182
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 183 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 238
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 239 LNHILGILGSPSQEDLNCGINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 298
Query: 150 NPEHRPYMSELLEHPFIT 167
           NP  R  + + L HP++ 
Sbjct: 299 NPHKRIEVEQALAHPYLA 316

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 127 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTD---DE 183
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 184 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 239
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 240 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 274

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 127 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTD---DE 183
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 184 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 239
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 240 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 274

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 119 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 176 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 231
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 232 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 266

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE----VKIVDFGLSRETANT 57
           SE+  +F+L  I   + +LH   V+HRDL+ SN+L   +      ++I DFG +++    
Sbjct: 119 SEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAE 178
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                T   + +++APE+++       GYD   D+W+LGI    +  G  PF +  P+  
Sbjct: 179 NGLLMTPCYTANFVAPEVLK-----RQGYDEGCDIWSLGILLYTMLAGYTPFAN-GPSDT 232
Query: 118 LFQIVRNPPPGLYRAS--NW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT---SL 169
             +I+     G +  S  NW   S+   D +++ L  +P  R    ++L+HP++T    L
Sbjct: 233 PEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKL 292
Query: 170 PENDL 174
           P++ L
Sbjct: 293 PQSQL 297

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 21/176 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  + +I+  +  +H++ ++HRDL+  N+LL    K   VK+ DFGL+ E     
Sbjct: 128 SEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQ 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTR 116
                F G+P +++PE++R      D Y   +D+WA G+    L  G PPF  ED H   
Sbjct: 188 QAWFGFAGTPGYLSPEVLR-----KDPYGKPVDIWACGVILYILLVGYPPFWDEDQH--- 239
Query: 117 ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            L+Q ++    G Y   +  W   +    + I + L  NP  R    + L+HP++ 
Sbjct: 240 KLYQQIK---AGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVC 292

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 141 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 197
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 198 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 253
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 254 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 288

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 124 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 181 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 236
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 237 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 271

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H N ++HR+L+  N+LL    K   VK+ DFGL+ E  N  
Sbjct: 103 SEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV-NDS 161
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +    F G+P +++PE+++      D Y   +D+WA G+    L  G PPF D    R  
Sbjct: 162 EAWHGFAGTPGYLSPEVLK-----KDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY 216
Query: 119 FQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            QI       P P     +  ++  +D +   L  NP+ R    + L+ P+I +
Sbjct: 217 AQIKAGAYDYPSPEWDTVTPEAKSLIDSM---LTVNPKKRITADQALKVPWICN 267

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 142 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 198
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 199 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 254
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 255 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 289

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 119 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 176 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 231
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 232 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 266

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 142 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 198
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
               + +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 199 MXGXVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 254
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  +A+  + N
Sbjct: 255 ILRLVGTPGAELLKKISSESARNYIQSLAQMPKMN 289

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 118 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 174
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 175 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 230
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 231 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 265

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D+
Sbjct: 120 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DE 176
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 177 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 232
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 233 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 267

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H N ++HR+L+  N+LL    K   VK+ DFGL+ E  N  
Sbjct: 103 SEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV-NDS 161
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +    F G+P +++PE+++      D Y   +D+WA G+    L  G PPF D    R  
Sbjct: 162 EAWHGFAGTPGYLSPEVLK-----KDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY 216
Query: 119 FQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            QI       P P     +  ++  +D +   L  NP+ R    + L+ P+I +
Sbjct: 217 AQIKAGAYDYPSPEWDTVTPEAKSLIDSM---LTVNPKKRITADQALKVPWICN 267

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H N ++HR+L+  N+LL    K   VK+ DFGL+ E  N  
Sbjct: 102 SEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV-NDS 160
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +    F G+P +++PE+++      D Y   +D+WA G+    L  G PPF D    R  
Sbjct: 161 EAWHGFAGTPGYLSPEVLK-----KDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY 215
Query: 119 FQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            QI       P P     +  ++  +D +   L  NP+ R    + L+ P+I +
Sbjct: 216 AQIKAGAYDYPSPEWDTVTPEAKSLIDSM---LTVNPKKRITADQALKVPWICN 266

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +++ DFGL++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H N ++HR+L+  N+LL    K   VK+ DFGL+ E  N  
Sbjct: 126 SEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV-NDS 184
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +    F G+P +++PE+++      D Y   +D+WA G+    L  G PPF D    R  
Sbjct: 185 EAWHGFAGTPGYLSPEVLK-----KDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY 239
Query: 119 FQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            QI       P P     +  ++  +D +   L  NP+ R    + L+ P+I +
Sbjct: 240 AQIKAGAYDYPSPEWDTVTPEAKSLIDSM---LTVNPKKRITADQALKVPWICN 290

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 35/198 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 123 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 182
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 183 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 238
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 239 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 298
Query: 150 NPEHRPYMSELLEHPFIT 167
           NP  R  + + L HP++ 
Sbjct: 299 NPHKRIEVEQALAHPYLA 316

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 185 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 236

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 180
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 181 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 232

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 129 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 188
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 189 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 244
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 245 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 304
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 305 NPHKRIEVEQALAHPYL 321

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 180
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 181 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 236
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 237 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 296
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 297 NPHKRIEVEQALAHPYL 313

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 123 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 182
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 183 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 238
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 239 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 298
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 299 NPHKRIEVEQALAHPYL 315

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 126 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 185
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 186 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 237

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 127 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 186
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 187 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 238

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 118 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 177
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 178 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 229

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 185 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 236

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 119 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 178
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 179 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 230

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 185 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 236

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 119 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 178
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 179 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 230

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 141 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 200
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 201 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 252

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 141 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDH 200
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 201 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 252

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 131 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 187
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 188 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 242
Query: 121 IV 122
           IV
Sbjct: 243 IV 244

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDH 180
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 181 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 236
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 237 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 296
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 297 NPHKRIEVEQALAHPYL 313

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDH 184
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 185 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 240
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 241 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 300
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 301 NPHKRIEVEQALAHPYL 317

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDH 184
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 185 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 240
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 241 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 300
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 301 NPHKRIEVEQALAHPYL 317

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDH 180
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 181 TGFLTEYVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 236
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 237 LNHILGILGSPSQEDLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 296
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 297 NPHKRIEVEQALAHPYL 313

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 139 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 195
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 196 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 250
Query: 121 IV 122
           IV
Sbjct: 251 IV 252

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLXGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 159 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 215
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 216 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 270
Query: 121 IV 122
           IV
Sbjct: 271 IV 272

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+D+GL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDYGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLAGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T    P  W
Sbjct: 111 DVCEGMAYLEEASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 170
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG- 128
            +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V +   G 
Sbjct: 171 ASPEVF-----SFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVVEDISTGF 221
Query: 129 -LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            LY+    S H    +  C ++ PE RP  S LL  
Sbjct: 222 RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 257

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADEPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 125 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDEQGYIQVTDFGFAKRVKG---R 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 182 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 236
Query: 121 IV 122
           IV
Sbjct: 237 IV 238

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE    F  +++I+G+ + H   V HRDL+  N LL  DG     +KI DFG S+ +   
Sbjct: 113 SEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL--DGSPAPRLKICDFGYSKSSV-L 169
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             + K+ +G+P+++APE++    KE DG     DVW+ G+T   +  G  PFED    + 
Sbjct: 170 HSQPKSTVGTPAYIAPEVLL--KKEYDG--KVADVWSCGVTLYVMLVGAYPFEDPEEPKN 225
Query: 118 LFQI------VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
             +       V+   P     S   +H    I+     +P  R  + E+  H  F+ +LP
Sbjct: 226 FRKTIHRILNVQYAIPDYVHISPECRH---LISRIFVADPAKRISIPEIRNHEWFLKNLP 282
Query: 171 ENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNI 207
            + ++ +T+  Q+ + +     +E++  ++ I+E  +
Sbjct: 283 ADLMNDNTMTTQFDESDQPGQSIEEI--MQIIAEATV 317

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 121 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKIXDFGLARVADPDHDH 180
Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 181 TGFLTEYVATRWYRAPEIMLNS----KGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 236
Query: 118 LFQIV----------------------------RNPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                            +N  P      N     +D + + L  
Sbjct: 237 LNHILGILGSPSQEDLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 296
Query: 150 NPEHRPYMSELLEHPFI 166
           NP  R  + + L HP++
Sbjct: 297 NPHKRIEVEQALAHPYL 313

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSP 68
            ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S E   TF +K   F G+P
Sbjct: 119 FRQIVSAVQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFSNEF--TFGNKLDAFCGAP 176
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG 128
            + APE+ +   K+ DG +  +DVW+LG+    L  G  PF+  +      +++R    G
Sbjct: 177 PYAAPELFQG--KKYDGPE--VDVWSLGVILYTLVSGSLPFDGQNLKELRERVLR----G 228
Query: 129 LYRASNW-SQHYVDFIAECLEKNPEHRPYMSEL 160
            YR   + S    + + + L  NP  R  + ++
Sbjct: 229 KYRIPFYXSTDCENLLKKFLILNPSKRGTLEQI 261

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T    P  W
Sbjct: 109 DVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 168
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG- 128
            +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V +   G 
Sbjct: 169 ASPEVF-----SFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVVEDISTGF 219
Query: 129 -LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            LY+    S H    +  C ++ PE RP  S LL  
Sbjct: 220 RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T    P  W
Sbjct: 111 DVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 170
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG- 128
            +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V +   G 
Sbjct: 171 ASPEVF-----SFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVVEDISTGF 221
Query: 129 -LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            LY+    S H    +  C ++ PE RP  S LL  
Sbjct: 222 RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 257

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 43/218 (19%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA---NTFDKK 61
           ++   L +++ G+ + H   V+HRDL+  N+L+ + GE+K+ DFGL+R  +    T+D +
Sbjct: 101 NVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNE 160
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF------EDMHPT 115
              L    W  P  +  G  +   Y  +ID+W +G    E+  G+P F      E +H  
Sbjct: 161 VVTL----WYRPPDILLGSTD---YSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLH-- 211
Query: 116 RALFQIVRNPP----PGL-------------YRASNWSQHY-------VDFIAECLEKNP 151
             +F+I+  P     PG+             YRA     H         D + + L+   
Sbjct: 212 -FIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEG 270
Query: 152 EHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQ 189
            +R    + ++HPF  SL E    L      +  +E+Q
Sbjct: 271 RNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEIQ 308

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE    F  +++++G+ + H   + HRDL+  N LL  DG     +KI DFG S+ +   
Sbjct: 114 SEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLL--DGSPAPRLKICDFGYSKSSV-L 170
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             + K+ +G+P+++APE++    +E DG     DVW+ G+T   +  G  PFED    R 
Sbjct: 171 HSQPKSTVGTPAYIAPEVLL--RQEYDG--KIADVWSCGVTLYVMLVGAYPFEDPEEPRD 226
Query: 118 LFQI------VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
             +       V+   P   R S    H    I+     +P  R  + E+  H  F+ +LP
Sbjct: 227 YRKTIQRILSVKYSIPDDIRISPECCH---LISRIFVADPATRISIPEIKTHSWFLKNLP 283
Query: 171 ENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNI 207
            + ++ S    Q+++ E Q M   D   ++ ISE  I
Sbjct: 284 ADLMNESNTGSQFQEPE-QPMQSLD-TIMQIISEATI 318

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T    D 
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHT----DD 177
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTR 116
           + T   +  W  APEIM         Y+  +D+W++G    EL  G+   P  + +   +
Sbjct: 178 EMTGXVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLK 233
Query: 117 ALFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
            + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 234 LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 23/171 (13%)
Query: 8   FILKEIITGMVFLHENH--------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           F+L+ +    + L E H        V+HRDL+ +NV L     VK+ DFGL+R   +   
Sbjct: 112 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS 171
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             KTF+G+P +M+PE M         Y+ + D+W+LG    EL    PPF          
Sbjct: 172 FAKTFVGTPYYMSPEQM-----NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAG 226
Query: 120 QI----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +I     R  P   YR   +S    + I   L     HRP + E+LE+P I
Sbjct: 227 KIREGKFRRIP---YR---YSDELNEIITRMLNLKDYHRPSVEEILENPLI 271

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T    P  W
Sbjct: 131 DVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 190
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG- 128
            +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V +   G 
Sbjct: 191 ASPEVF-----SFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVVEDISTGF 241
Query: 129 -LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            LY+    S H    +  C ++ PE RP  S LL  
Sbjct: 242 RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 277

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T    P  W
Sbjct: 112 DVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 171
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG- 128
            +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V +   G 
Sbjct: 172 ASPEVF-----SFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVVEDISTGF 222
Query: 129 -LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            LY+    S H    +  C  + PE RP  S LL  
Sbjct: 223 RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ 258

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            +E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FAEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   ++  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYQMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFG ++       +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG---RTW 196
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 197 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T    P  W
Sbjct: 114 DVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKW 173
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG- 128
            +PE+          Y ++ DVW+ G+   E+  +GK P+E+    R+  ++V +   G 
Sbjct: 174 ASPEVF-----SFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----RSNSEVVEDISTGF 224
Query: 129 -LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            LY+    S H    +  C  + PE RP  S LL  
Sbjct: 225 RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ 260

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 23/217 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE    F  +++I+G+ + H   V HRDL+  N LL  DG     +KI DFG S+ +   
Sbjct: 112 SEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL--DGSPAPRLKICDFGYSKSSV-L 168
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             + K+ +G+P+++APE++    KE DG     DVW+ G+T   +  G  PFED    + 
Sbjct: 169 HSQPKSTVGTPAYIAPEVLL--KKEYDG--KVADVWSCGVTLYVMLVGAYPFEDPEEPKN 224
Query: 118 LFQI------VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
             +       V+   P     S   +H    I+     +P  R  + E+  H  F+ +LP
Sbjct: 225 FRKTIHRILNVQYAIPDYVHISPECRH---LISRIFVADPAKRISIPEIRNHEWFLKNLP 281
Query: 171 ENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNI 207
            + ++ +T+  Q+   +     +E++  ++ I+E  +
Sbjct: 282 ADLMNDNTMTTQFAASDQPGQSIEEI--MQIIAEATV 316

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+++ + G +K+ DFG ++       +  
Sbjct: 141 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG---RTW 197
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 198 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+++ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLIIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPEIIIS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184
Query: 61  KKTF---LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                  + +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 185 TGFLXEXVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 236

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 126 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 185
Query: 61  KKTF---LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
                  + +  + APEIM        GY   ID+W++G    E+   +P F   H
Sbjct: 186 TGFLXEXVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH 237

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 23/171 (13%)
Query: 8   FILKEIITGMVFLHENH--------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           F+L+ +    + L E H        V+HRDL+ +NV L     VK+ DFGL+R   +  D
Sbjct: 112 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDED 171
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             K F+G+P +M+PE M         Y+ + D+W+LG    EL    PPF          
Sbjct: 172 FAKEFVGTPYYMSPEQM-----NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAG 226
Query: 120 QI----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +I     R  P   YR   +S    + I   L     HRP + E+LE+P I
Sbjct: 227 KIREGKFRRIP---YR---YSDELNEIITRMLNLKDYHRPSVEEILENPLI 271

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 17/214 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE    F  +++I+G+ + H   V HRDL+  N LL  DG     +KI DFG S+ +   
Sbjct: 113 SEDEARFFFQQLISGVSYAHAMQVAHRDLKLENTLL--DGSPAPRLKIADFGYSKASV-L 169
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             + K+ +G+P+++APE++    KE DG     DVW+ G+T   +  G  PFED    + 
Sbjct: 170 HSQPKSAVGTPAYIAPEVLL--KKEYDG--KVADVWSCGVTLYVMLVGAYPFEDPEEPKN 225
Query: 118 LFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPEND 173
             + +       Y   ++   S      I+     +P  R  + E+  H  F+ +LP + 
Sbjct: 226 FRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPADL 285
Query: 174 LHLSTVNCQYKDQELQTMHVEDLAALETISEDNI 207
           ++ +T+  Q+ + +     +E++  ++ I+E  +
Sbjct: 286 MNDNTMTTQFDESDQPGQSIEEI--MQIIAEATV 317

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANT 57
           +SE ++A ++K+++  + + H  HV+H+DL+  N+L    +    +KI+DFGL+ E   +
Sbjct: 121 LSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA-ELFKS 179
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
            +      G+  +MAPE+ +   ++V     + D+W+ G+    L  G  PF        
Sbjct: 180 DEHSTNAAGTALYMAPEVFK---RDV---TFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV 233
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             +     P         +   VD + + L K+PE RP  +++L H
Sbjct: 234 QQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH 279

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 165 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-SH 223
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 224 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 278
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 279 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 335
Query: 168 SLPENDLHLSTVNCQYKD--QELQTMHVEDLAALETISEDNIVQELEERHN 216
            +P+  LH S V  + K+  ++++      LA +    E   ++++E+  N
Sbjct: 336 KVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASN 386

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 159 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-SH 217
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 218 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 272
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 273 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 329
Query: 168 SLPENDLHLSTVNCQYKD--QELQTMHVEDLAALETISEDNIVQELEERHN 216
            +P+  LH S V  + K+  ++++      LA +    E   ++++E+  N
Sbjct: 330 KVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASN 380

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 115 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-SH 173
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 174 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 228
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 229 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 285
Query: 168 SLPENDLHLSTVNCQYKD--QELQTMHVEDLAALETISEDNIVQELEERHN 216
            +P+  LH S V  + K+  ++++      LA +    E   ++++E+  N
Sbjct: 286 KVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASN 336

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 135 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 191
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 192 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 246

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 196
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 197 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 196
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 197 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 133 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 189
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 190 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 244

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 196
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 197 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 196
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 197 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 115 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 173
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 174 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 228
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 229 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 285
Query: 168 SLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISED 205
            +P+  LH S V  + K++  + +  E  +AL T+  D
Sbjct: 286 KVPQTPLHTSRVLKEDKER-WEDVKEEMTSALATMRVD 322

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 196
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 197 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 251

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           EQ  A I++E+   +++ H   VIHRD++  N+LL   GE+KI DFG S    +   ++K
Sbjct: 122 EQRTATIMEELADALMYCHGKKVIHRDIKPENLLLGLKGELKIADFGWSVHAPSL--RRK 179
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           T  G+  ++ PE++     E   ++ ++D+W +G+   EL  G PPFE         +IV
Sbjct: 180 TMCGTLDYLPPEMI-----EGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIV 234
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           +     L   ++      D I++ L  NP  R  ++++  HP++ +
Sbjct: 235 KV---DLKFPASVPTGAQDLISKLLRHNPSERLPLAQVSAHPWVRA 277

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 141 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 197
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 198 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 252

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +  
Sbjct: 161 EPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTW 217
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
              G+P ++APEI+        GY+  +D WALG+   E+  G PPF    P +   +IV
Sbjct: 218 XLCGTPEYLAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIV 272

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+ FGL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILGFGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P  +APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEALAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 129 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 188 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 242
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 243 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 299
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 300 KVPQTPLHTSRV 311

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 37/198 (18%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+L+    ++KI DFGL+R  A+    
Sbjct: 141 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLAR-IADPEHD 199
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH--- 113
              FL     +  + APEIM        GY   ID+W++G    E+   +P F   H   
Sbjct: 200 HTGFLTEXVATRWYRAPEIML----NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD 255
Query: 114 -----------PTRALFQIVRNPPPGLYRAS-------NWSQHY-------VDFIAECLE 148
                      P++     + N     Y  S        W++ +       +D +   L 
Sbjct: 256 QLNHILGILGSPSQEDLNCIINMKARNYLQSLPSKTKVAWAKLFPKSDSKALDLLDRMLT 315
Query: 149 KNPEHRPYMSELLEHPFI 166
            NP  R  + E L HP++
Sbjct: 316 FNPNKRITVEEALAHPYL 333

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 41/194 (21%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE---TANTFDKKK 62
           + +   +++ G+ F HEN ++HRDL+  N+L+ K G++K+ DFGL+R      NTF  + 
Sbjct: 110 VKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEV 169
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTRALF 119
             L    + AP+++         Y   ID+W+ G    E+  GKP F    D    + +F
Sbjct: 170 VTLW---YRAPDVLMGSRT----YSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIF 222
Query: 120 QIVRNPPPGLYRASNWSQHY----------------------------VDFIAECLEKNP 151
            I+  P   L+ +      Y                            +DF+   L+ NP
Sbjct: 223 DIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNP 282
Query: 152 EHRPYMSELLEHPF 165
           + R    + L HP+
Sbjct: 283 DMRLSAKQALHHPW 296

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 31/185 (16%)
Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
           +F+L +++ G+ + H+  V+HRDL+  N+L+ ++GE+KI DFGL+R       K    + 
Sbjct: 104 SFLL-QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIV 162
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--- 123
           +  + AP+++    K    Y   ID+W++G    E+ +G P F  +     L +I R   
Sbjct: 163 TLWYRAPDVLMGSKK----YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILG 218
Query: 124 ----------------NPPPGLYRASNWSQHY-------VDFIAECLEKNPEHRPYMSEL 160
                           +P   +Y    W           +D +++ L+ +P  R    + 
Sbjct: 219 TPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278
Query: 161 LEHPF 165
           LEH +
Sbjct: 279 LEHAY 283

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR----------- 52
           Q ++F  K+I +GM +LH  ++IHRDL   N L+ ++  V + DFGL+R           
Sbjct: 109 QRVSFA-KDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEG 167
Query: 53  -ETANTFDKKK--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
             +    D+KK  T +G+P WMAPE++         YD ++DV++ GI   E+       
Sbjct: 168 LRSLKKPDRKKRYTVVGNPYWMAPEMI-----NGRSYDEKVDVFSFGIVLCEIIGRVNAD 222
Query: 110 EDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            D  P    F +        Y   N    +      C + +PE RP   +L
Sbjct: 223 PDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKL 273

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 121 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 179
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 180 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 234
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 235 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 291
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 292 KVPQTPLHTSRV 303

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 114 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 173 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 227
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 228 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 284
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 285 KVPQTPLHTSRV 296

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 12  EIITGMVFLHENHV---IHRDLRGSNVLLTKDGE--------VKIVDFGLSRETANTFDK 60
           +I  GM +LH+  +   IHRDL+ SN+L+ +  E        +KI DFGL+RE   T   
Sbjct: 113 QIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRT--T 170
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           K +  G+ +WMAPE++R        +    DVW+ G+   EL  G+ PF  +      + 
Sbjct: 171 KMSAAGAYAWMAPEVIRASM-----FSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYG 225
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           +  N    L   S   + +   + +C   +P  RP  + +L+ 
Sbjct: 226 VAMN-KLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ 267

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 113 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 171
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 172 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 226
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 227 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 283
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 284 KVPQTPLHTSRV 295

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---R 194
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P ++AP I+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWXLCGTPEYLAPAIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249
Query: 121 IV 122
           IV
Sbjct: 250 IV 251

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 119 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 177
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 178 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 232
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 233 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 289
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 290 KVPQTPLHTSRV 301

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 120 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 178
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +   T   +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 179 NSLTTPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 233
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 234 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 290
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 291 KVPQTPLHTSRV 302

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 66/110 (60%), Gaps = 10/110 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFD 59
           E   A I+K+I++G+ +LH+++++HRD++  N+LL        +KIVDFGLS   +  + 
Sbjct: 145 ECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY- 203
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           K +  LG+  ++APE+++        Y+ + DVW+ G+    L  G PPF
Sbjct: 204 KLRDRLGTAYYIAPEVLK------KKYNEKCDVWSCGVIMYILLCGYPPF 247

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 31/185 (16%)
Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
           +F+L +++ G+ + H+  V+HRDL+  N+L+ ++GE+KI DFGL+R       K    + 
Sbjct: 104 SFLL-QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVV 162
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--- 123
           +  + AP+++    K    Y   ID+W++G    E+ +G P F  +     L +I R   
Sbjct: 163 TLWYRAPDVLMGSKK----YSTTIDIWSVGCIFAEMVNGAPLFPGVSEADQLMRIFRILG 218
Query: 124 ----------------NPPPGLYRASNWSQHY-------VDFIAECLEKNPEHRPYMSEL 160
                           +P   +Y    W           +D +++ L+ +P  R    + 
Sbjct: 219 TPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278
Query: 161 LEHPF 165
           LEH +
Sbjct: 279 LEHAY 283

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+D GL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 288 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 347
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 348 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 402
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 403 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 445

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 31/185 (16%)
Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
           +F+L +++ G+ + H+  V+HRDL+  N+L+ ++GE+KI DFGL+R       K    + 
Sbjct: 104 SFLL-QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVV 162
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--- 123
           +  + AP+++    K    Y   ID+W++G    E+ +G P F  +     L +I R   
Sbjct: 163 TLWYRAPDVLMGSKK----YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILG 218
Query: 124 ----------------NPPPGLYRASNWSQHY-------VDFIAECLEKNPEHRPYMSEL 160
                           +P   +Y    W           +D +++ L+ +P  R    + 
Sbjct: 219 TPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278
Query: 161 LEHPF 165
           LEH +
Sbjct: 279 LEHAY 283

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 288 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 347
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 348 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 402
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 403 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 445

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DF L+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFYLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 288 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 347
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 348 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 402
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 403 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 445

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+D GL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL R    N +  ++       W
Sbjct: 289 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKW 348
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 349 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 403
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 404 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 446

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 33/203 (16%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---KIVDFGLSRETANTF 58
           +E   + +++++ + + FLH   + HRDL+  N+L     +V   KI DFGL        
Sbjct: 109 NELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFGLGSGIKLNG 168
Query: 59  DKKK-------TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-- 109
           D          T  GS  +MAPE++    +E   YD R D+W+LG+    L  G PPF  
Sbjct: 169 DCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVG 228
Query: 110 ---EDMHPTRA---------LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPE 152
               D    R          LF+ ++    G Y     +W   S    D I++ L ++ +
Sbjct: 229 RCGSDCGWDRGEACPACQNMLFESIQE---GKYEFPDKDWAHISCAAKDLISKLLVRDAK 285
Query: 153 HRPYMSELLEHPFITSL-PENDL 174
            R   +++L+HP++    PEN L
Sbjct: 286 QRLSAAQVLQHPWVQGCAPENTL 308

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+D GL+R T    D+
Sbjct: 122 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDGGLARHTD---DE 178
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK---PPFEDMHPTRA 117
              ++ +  + APEIM         Y+  +D+W++G    EL  G+   P  + +   + 
Sbjct: 179 MTGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 234
Query: 118 LFQIVRNPPPGLYR--ASNWSQHYVDFIAECLEKN 150
           + ++V  P   L +  +S  +++Y+  + +  + N
Sbjct: 235 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMN 269

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 23/171 (13%)
Query: 8   FILKEIITGMVFLHENH--------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           F+L+ +    + L E H        V+HRDL+ +NV L     VK+ DFGL+R   +   
Sbjct: 112 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS 171
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             K F+G+P +M+PE M         Y+ + D+W+LG    EL    PPF          
Sbjct: 172 FAKAFVGTPYYMSPEQM-----NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAG 226
Query: 120 QI----VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +I     R  P   YR   +S    + I   L     HRP + E+LE+P I
Sbjct: 227 KIREGKFRRIP---YR---YSDELNEIITRMLNLKDYHRPSVEEILENPLI 271

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 113 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 172
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 173 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 227
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 228 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 270

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 111 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 170
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 171 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 225
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 226 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 268

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R   +     +     P  W
Sbjct: 122 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 371 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 430
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 431 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 485
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 486 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 528

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 11/160 (6%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL----SRETANTFDKKKTF 64
           I ++   GM +LH  ++IHRD++ +N+ L +   VKI DFGL    SR + +   ++ T 
Sbjct: 137 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPT- 195
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVR 123
            GS  WMAPE++R   ++ + +  + DV++ GI   EL  G+ P+  ++   + +F + R
Sbjct: 196 -GSVLWMAPEVIRM--QDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR 252
Query: 124 N-PPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELL 161
               P L +   N  +     +A+C++K  E RP   ++L
Sbjct: 253 GYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQIL 292

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 119 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 179 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 233
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 234 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 276

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 115 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 174
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 175 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 229
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 230 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 272

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 23/217 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE    F  +++I+G+ + H   V HRDL+  N LL  DG     +KI  FG S+ +   
Sbjct: 113 SEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL--DGSPAPRLKICAFGYSKSSV-L 169
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             + K+ +G+P+++APE++    KE DG     DVW+ G+T   +  G  PFED    + 
Sbjct: 170 HSQPKSTVGTPAYIAPEVLL--KKEYDG--KVADVWSCGVTLYVMLVGAYPFEDPEEPKN 225
Query: 118 LFQI------VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
             +       V+   P     S   +H    I+     +P  R  + E+  H  F+ +LP
Sbjct: 226 FRKTIHRILNVQYAIPDYVHISPECRH---LISRIFVADPAKRISIPEIRNHEWFLKNLP 282
Query: 171 ENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNI 207
            + ++ +T+  Q+ + +     +E++  ++ I+E  +
Sbjct: 283 ADLMNDNTMTTQFDESDQPGQSIEEI--MQIIAEATV 317

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANT 57
            +E+  + I K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  +
Sbjct: 158 FTEREASEIXKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-S 216
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---- 113
            +   T   +P ++APE++       + YD   D W+LG+    L  G PPF   H    
Sbjct: 217 HNSLTTPCYTPYYVAPEVL-----GPEKYDKSCDXWSLGVIXYILLCGYPPFYSNHGLAI 271
Query: 114 ----PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI--- 166
                TR        P P     S  S+     I   L+  P  R  ++E   HP+I   
Sbjct: 272 SPGXKTRIRXGQYEFPNP---EWSEVSEEVKXLIRNLLKTEPTQRXTITEFXNHPWIXQS 328
Query: 167 TSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISED 205
           T +P+  LH S V  + K++  + +  E  +AL T+  D
Sbjct: 329 TKVPQTPLHTSRVLKEDKER-WEDVKEEXTSALATMRVD 366

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 33/229 (14%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFD 59
           M+E       ++II  + + H + ++HRDL+  N+LL  +  VKI DFGLS   T   F 
Sbjct: 105 MTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF- 163
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             KT  GSP++ APE++    K   G +  +DVW+ GI    +  G+ PF+D        
Sbjct: 164 -LKTSCGSPNYAAPEVI--NGKLYAGPE--VDVWSCGIVLYVMLVGRLPFDDEF------ 212
Query: 120 QIVRNPPPGLYRASNWSQHYV-DF--------IAECLEKNPEHRPYMSELLEHP-FITSL 169
                  P L++  N   + + DF        I   +  +P  R  + E+   P F  +L
Sbjct: 213 ------IPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNL 266
Query: 170 PENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSK 218
           P+    +  V   Y D  +    V  L      SED IV+ L    N++
Sbjct: 267 PDYLRPMEEVQGSYADSRI----VSKLGEAMGFSEDYIVEALRSDENNE 311

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 119 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 179 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 233
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 234 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 276

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R   +     +     P  W
Sbjct: 112 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKW 171
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 172 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 226
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K PE RP   Y+   LE  F ++ P+
Sbjct: 227 P-----PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 269

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS 67
           F   E+   + +LH   +I+RDL+  N+LL K+G +KI DFG ++      D      G+
Sbjct: 110 FYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP---DVTYXLCGT 166
Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI----VR 123
           P ++APE++         Y+  ID W+ GI   E+  G  PF D +  +   +I    +R
Sbjct: 167 PDYIAPEVV-----STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELR 221
Query: 124 NPP 126
            PP
Sbjct: 222 FPP 224

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 24/218 (11%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  + 
Sbjct: 113 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TSH 171
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
           +       +P ++APE++       + YD   D+W+LG+    L  G PPF   H     
Sbjct: 172 NSLTEPCYTPYYVAPEVL-----GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 226
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 227 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 283
Query: 168 SLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISED 205
            +P+  LH S V  + K++  + +  E  +AL T+  D
Sbjct: 284 KVPQTPLHTSRVLKEDKER-WEDVKEEMTSALATMRVD 320

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTF 58
           SE   ++I++++++ +  +H+  V+HRDL+  N+L T +    E+KI+DFG +R      
Sbjct: 104 SETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN 163
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE----DMHP 114
              KT   +  + APE++       +GYD   D+W+LG+    +  G+ PF+     +  
Sbjct: 164 QPLKTPCFTLHYAAPELLN-----QNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTC 218
Query: 115 TRALFQIVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           T A+ +I++    G +        N SQ   D I   L  +P  R  MS L
Sbjct: 219 TSAV-EIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGL 268

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE    F  +++I+G+ + H   V HRDL+  N LL  DG     +KI  FG S+ +   
Sbjct: 113 SEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLL--DGSPAPRLKICAFGYSKSSVLH 170
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
              K T +G+P+++APE++    KE DG     DVW+ G+T   +  G  PFED    + 
Sbjct: 171 SQPKDT-VGTPAYIAPEVLL--KKEYDG--KVADVWSCGVTLYVMLVGAYPFEDPEEPKN 225
Query: 118 LFQI------VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
             +       V+   P     S   +H    I+     +P  R  + E+  H  F+ +LP
Sbjct: 226 FRKTIHRILNVQYAIPDYVHISPECRH---LISRIFVADPAKRISIPEIRNHEWFLKNLP 282
Query: 171 ENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNI 207
            + ++ +T+  Q+ + +     +E++  ++ I+E  +
Sbjct: 283 ADLMNDNTMTTQFDESDQPGQSIEEI--MQIIAEATV 317

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 147 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXX 206
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 207 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 258
Query: 116 RALFQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++    G  + + SN +      + +C    P  RP   +L+E
Sbjct: 259 EELFKLLKE---GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 304

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL  +  IHRDL   N L+ +D  VK+ DFG++R   +  D+  + +G+    
Sbjct: 112 DVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD--DQYVSSVGTKFPV 169
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP 127
            W APE+          Y ++ DVWA GI   E+   GK P++    +  + ++ +    
Sbjct: 170 KWSAPEVFH-----YFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHR- 223
Query: 128 GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH 175
            LYR    S      +  C  + PE RP   +LL    I  L E D H
Sbjct: 224 -LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS--IEPLREKDKH 268

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ + + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 119 QIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDM-HP--TRALFQIVRNPP 126
            APE +  G      +  + DVW+ GI  +E+   G+ P+  M +P   RAL +  R P 
Sbjct: 179 TAPEAINFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP- 232
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               R  N  +   + +  C +  PE RP
Sbjct: 233 ----RPENCPEELYNIMMRCWKNRPEERP 257

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++ + +  +H   V+HRD++ +NV +T  G VK+ D GL R  ++      + +G+P +M
Sbjct: 144 QLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYM 203
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRALFQIVRNPPPGL 129
           +PE +   H+  +GY+ + D+W+LG    E+   + PF  + M+      +I +   P L
Sbjct: 204 SPERI---HE--NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPL 258
Query: 130 YRASNWSQHYVDFIAECLEKNPEHRP 155
             + ++S+     +  C+  +PE RP
Sbjct: 259 -PSDHYSEELRQLVNMCINPDPEKRP 283

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFD 59
           MSEQ      ++II+ + + H + ++HRDL+  N+LL +   VKI DFGLS   T   F 
Sbjct: 109 MSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF- 167
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             KT  GSP++ APE++    K   G +  +DVW+ G+    +   + PF+D      LF
Sbjct: 168 -LKTSCGSPNYAAPEVI--SGKLYAGPE--VDVWSCGVILYVMLCRRLPFDD-ESIPVLF 221
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPE 171
           + + N   G+Y    + S      I   L  NP +R  + E+++   F   LPE
Sbjct: 222 KNISN---GVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 272

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P+++APEI+   + E  G +   D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPAFVAPEIV---NYEPLGLE--ADMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFD 59
           MSEQ      ++II+ + + H + ++HRDL+  N+LL +   VKI DFGLS   T   F 
Sbjct: 110 MSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF- 168
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             KT  GSP++ APE++    K   G +  +DVW+ G+    +   + PF+D      LF
Sbjct: 169 -LKTSCGSPNYAAPEVI--SGKLYAGPE--VDVWSCGVILYVMLCRRLPFDD-ESIPVLF 222
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPE 171
           + + N   G+Y    + S      I   L  NP +R  + E+++   F   LPE
Sbjct: 223 KNISN---GVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 273

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           MSEQ      ++II+ + + H + ++HRDL+  N+LL +   VKI DFGLS    +  + 
Sbjct: 104 MSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-NF 162
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KT  GSP++ APE++    K   G +  +DVW+ G+    +   + PF+D      LF+
Sbjct: 163 LKTSCGSPNYAAPEVI--SGKLYAGPE--VDVWSCGVILYVMLCRRLPFDD-ESIPVLFK 217
Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPE 171
            + N   G+Y    + S      I   L  NP +R  + E+++   F   LPE
Sbjct: 218 NISN---GVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 267

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 15/149 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ + + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 292 QIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKW 351
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDM---HPTRALFQIVRNPP 126
            APE +  G      +  + DVW+ GI  +E+   G+ P+  M      RAL +  R P 
Sbjct: 352 TAPEAINFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPR 406
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP 155
           P      N  +   + +  C +  PE RP
Sbjct: 407 P-----ENCPEELYNIMMRCWKNRPEERP 430

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           MSEQ      ++II+ + + H + ++HRDL+  N+LL +   VKI DFGLS    +  + 
Sbjct: 100 MSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-NF 158
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KT  GSP++ APE++    K   G +  +DVW+ G+    +   + PF+D      LF+
Sbjct: 159 LKTSCGSPNYAAPEVI--SGKLYAGPE--VDVWSCGVILYVMLCRRLPFDD-ESIPVLFK 213
Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPE 171
            + N   G+Y    + S      I   L  NP +R  + E+++   F   LPE
Sbjct: 214 NISN---GVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 263

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    KKT  G     
Sbjct: 165 QLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVK 224
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   LF++++    G
Sbjct: 225 WMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEELFKLLKE---G 275
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             + + +N +      + +C    P  RP   +L+E
Sbjct: 276 HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    KKT  G     
Sbjct: 165 QLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVK 224
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   LF++++    G
Sbjct: 225 WMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEELFKLLKE---G 275
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             + + +N +      + +C    P  RP   +L+E
Sbjct: 276 HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 139 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 198
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 199 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 250
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 251 EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 296

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 117 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 176
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 177 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 226
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 227 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 140 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 199
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 200 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 251
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 252 EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 297

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I +GM ++   + +HRDL  +N+L+ ++   K+ DFGL+R    N +  ++       W
Sbjct: 122 QIASGMAYVERMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---PP 126
            APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R    P 
Sbjct: 182 TAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPC 236
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
           P         +   D + +C  K+PE RP   Y+   LE  F ++ P+
Sbjct: 237 P-----PECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQ 279

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 112 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 171
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 172 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 221
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPF 165
             + R  N  +     +  C ++ PE RP   Y+  +LE  F
Sbjct: 222 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 263

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 136 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 195
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 196 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 247
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 248 EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 293

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 147 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 206
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 207 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 258
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 259 EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 304

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIV---NYEPLGLE--ADMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 188 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 247
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 248 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 299
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 300 EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 345

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 132 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 191
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTR 116
           KKT  G     WMAPE +       D  Y ++ DVW+ G+   E+   G  P+  + P  
Sbjct: 192 KKTTNGRLPVKWMAPEAL------FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-PVE 244
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 245 ELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 289

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 147 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 206
Query: 61  KKTFLGS--PSWMAPEIM--RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
           KKT  G     WMAPE +  R        Y ++ DVW+ G+   E+   G  P+  + P 
Sbjct: 207 KKTTNGRLPVKWMAPEALFDRI-------YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PV 258
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 259 EELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 304

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 147 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 206
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTR 116
           KKT  G     WMAPE +       D  Y ++ DVW+ G+   E+   G  P+  + P  
Sbjct: 207 KKTTNGRLPVKWMAPEAL------FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-PVE 259
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            LF++++     + + SN +      + +C    P  RP   +L+E
Sbjct: 260 ELFKLLKE-GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE 304

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 123 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 182
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 183 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 232
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 233 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 277

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 33/203 (16%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---KIVDFGLSRETANTF 58
           +E   + +++++ + + FLH   + HRDL+  N+L     +V   KI DF L        
Sbjct: 109 NELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNG 168
Query: 59  DKKK-------TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-- 109
           D          T  GS  +MAPE++    +E   YD R D+W+LG+    L  G PPF  
Sbjct: 169 DCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVG 228
Query: 110 ---EDMHPTRA---------LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPE 152
               D    R          LF+ ++    G Y     +W   S    D I++ L ++ +
Sbjct: 229 RCGSDCGWDRGEACPACQNMLFESIQE---GKYEFPDKDWAHISCAAKDLISKLLVRDAK 285
Query: 153 HRPYMSELLEHPFITSL-PENDL 174
            R   +++L+HP++    PEN L
Sbjct: 286 QRLSAAQVLQHPWVQGCAPENTL 308

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 23/148 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           +I  GM F+ + + IHRDLR +N+L++     KI DFGL+R  A  F  K        W 
Sbjct: 286 QIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVGAK-FPIK--------WT 336
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDM---HPTRALFQIVRNPPP 127
           APE +  G      +  + DVW+ GI  +E+   G+ P+  M      RAL +  R P  
Sbjct: 337 APEAINFG-----SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP-- 389
Query: 128 GLYRASNWSQHYVDFIAECLEKNPEHRP 155
              R  N  +   + +  C +  PE RP
Sbjct: 390 ---RPENCPEELYNIMMRCWKNRPEERP 414

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 122 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 182 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 231
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 232 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 276

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 118 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 177
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 178 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 227
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 228 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 272

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 117 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKW 176
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 177 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 226
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 227 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 117 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 176
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 177 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 226
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 227 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 127 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 186
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 187 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 236
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 237 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 281

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 110 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 169
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 170 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 221
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 222 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 274

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 110 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 169
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 170 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 221
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 222 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 274

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 123 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 182
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 183 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 232
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 233 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 277

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 117 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 176
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 177 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 226
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 227 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 125 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 184
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 185 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 234
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 235 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 279

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 119 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 179 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 228
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 229 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 273

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRET-- 54
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+      ++      D+W++G+    L  G  PF  +  
Sbjct: 171 GNEF---KNIFGTPEFVAPEIVNYEPLGLEA-----DMWSIGVITYILLSGASPFLGDTK 222
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             T A    V       Y  SN S    DFI   L K+P+ R  + + L+HP+I
Sbjct: 223 QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +     P  W
Sbjct: 126 QIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 185
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 186 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 235
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 236 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 280

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSR--ET 54
           ++E      LK+I+ G+ +LH   + H DL+  N++L      +  +K++DFG++   E 
Sbjct: 126 LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 185
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  E  
Sbjct: 186 GNEF---KNIFGTPEFVAPEIV---NYEPLGLE--ADMWSIGVITYILLSGASPFLGETK 237
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
             T      V       Y  SN S+   DFI   L K+P+ R  +++ LEH +I ++   
Sbjct: 238 QETLTNISAVNYDFDEEY-FSNTSELAKDFIRRLLVKDPKRRMXIAQSLEHSWIKAIRRR 296
Query: 173 DLH 175
           ++ 
Sbjct: 297 NVR 299

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSR--ET 54
           ++E      LK+I+ G+ +LH   + H DL+  N++L      +  +K++DFG++   E 
Sbjct: 105 LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 164
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  E  
Sbjct: 165 GNEF---KNIFGTPEFVAPEIV---NYEPLGLE--ADMWSIGVITYILLSGASPFLGETK 216
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
             T      V       Y  SN S+   DFI   L K+P+ R  +++ LEH +I ++   
Sbjct: 217 QETLTNISAVNYDFDEEY-FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRR 275
Query: 173 DLH 175
           ++ 
Sbjct: 276 NVR 278

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 141 MTFKDLVSCTYQLARGMEYLASQKCIHRDLTARNVLVTENNVMKIADFGLARDINNIDYY 200
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 201 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 254
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 255 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 298

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL    A  F KK
Sbjct: 290 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL----ACDFSKK 345
Query: 62  K--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K    +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF   H T+   
Sbjct: 346 KPHASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGHSPFRQ-HKTKDKH 400
Query: 120 QIVR 123
           +I R
Sbjct: 401 EIDR 404

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++  GM ++   + IHRDLR +N+L+      KI DFGL+R   +     +     P  W
Sbjct: 113 QVAAGMAYIERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKW 172
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPGL 129
            APE    G      +  + DVW+ GI   EL   G+ P+  M+    L Q+ R      
Sbjct: 173 TAPEAALYGR-----FTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPC 227
Query: 130 YRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITSLPE 171
            +    S H  + +  C +K+PE RP   Y+   LE  F  + P+
Sbjct: 228 PQDCPISLH--ELMIHCWKKDPEERPTFEYLQSFLEDYFTATEPQ 270

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 146 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 205
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 206 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 259
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 260 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 303

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL    A  F KK
Sbjct: 290 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL----ACDFSKK 345
Query: 62  K--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K    +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF   H T+   
Sbjct: 346 KPHASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGHSPFRQ-HKTKDKH 400
Query: 120 QIVR 123
           +I R
Sbjct: 401 EIDR 404

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL    A  F KK
Sbjct: 290 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL----ACDFSKK 345
Query: 62  K--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K    +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF   H T+   
Sbjct: 346 KPHASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGHSPFRQ-HKTKDKH 400
Query: 120 QIVR 123
           +I R
Sbjct: 401 EIDR 404

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL    A  F KK
Sbjct: 289 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL----ACDFSKK 344
Query: 62  K--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K    +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF   H T+   
Sbjct: 345 KPHASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGHSPFRQ-HKTKDKH 399
Query: 120 QIVR 123
           +I R
Sbjct: 400 EIDR 403

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + +  I   L +++ G+   H++ ++HRDL+  N+L+  DG +K+ DFGL+R        
Sbjct: 116 LQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-----EDMHPT 115
               + +  + AP+++    K    Y   +D+W++G    E+  GKP F     +D  P 
Sbjct: 176 YTHEVVTLWYRAPDVLMGSKK----YSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLP- 230
Query: 116 RALFQIVRNPPP-----------------GLYRASNWS-------QHYVDFIAECLEKNP 151
             +F I+  P P                  ++    WS       Q  +D ++  L  +P
Sbjct: 231 -KIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDP 289
Query: 152 EHRPYMSELLEHPFITSL 169
             R    + + HP+   L
Sbjct: 290 NKRISARDAMNHPYFKDL 307

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 143 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 202
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 203 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 256
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 257 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 300

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + +  I   L +++ G+   H++ ++HRDL+  N+L+  DG +K+ DFGL+R        
Sbjct: 116 LQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF-----EDMHPT 115
               + +  + AP+++    K    Y   +D+W++G    E+  GKP F     +D  P 
Sbjct: 176 YTHEVVTLWYRAPDVLMGSKK----YSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLP- 230
Query: 116 RALFQIVRNPPP-----------------GLYRASNWS-------QHYVDFIAECLEKNP 151
             +F I+  P P                  ++    WS       Q  +D ++  L  +P
Sbjct: 231 -KIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDP 289
Query: 152 EHRPYMSELLEHPFITSL 169
             R    + + HP+   L
Sbjct: 290 NKRISARDAMNHPYFKDL 307

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 200 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 259
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 260 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 313
Query: 118 LFQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++    G  + + +N +      + +C    P  RP   +L+E
Sbjct: 314 LFKLLKE---GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 357

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM F+ E + IHR+LR +N+L++     KI DFGL+R    N +  ++       W
Sbjct: 113 QIAEGMAFIEERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 172
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDM-HPTRALFQIVRNPPPG 128
            APE +  G      +  + DVW+ GI   E+   G+ P+  M +P     ++++N   G
Sbjct: 173 TAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNP-----EVIQNLERG 222
Query: 129 --LYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLEHPFITS 168
             + R  N  +     +  C ++ PE RP   Y+  +LE  F  +
Sbjct: 223 YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 267

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRE---- 53
            +E+  + +++++   + FLH   + HRDL+  N+L     K   VKI DF L       
Sbjct: 108 FNEREASRVVRDVAAALDFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLN 167
Query: 54  ---TANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF- 109
              T  T  +  T  GS  +MAPE++     +   YD R D+W+LG+    +  G PPF 
Sbjct: 168 NSCTPITTPELTTPCGSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFV 227
Query: 110 ----EDMHPTRALFQIVRNPPPGLYRA----------SNW---SQHYVDFIAECLEKNPE 152
                D    R   ++ R     L+ +           +W   S    D I++ L ++ +
Sbjct: 228 GHCGADCGWDRG--EVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISKLLVRDAK 285
Query: 153 HRPYMSELLEHPFI 166
            R   +++L+HP++
Sbjct: 286 QRLSAAQVLQHPWV 299

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSR--ET 54
           ++E      LK+I+ G+ +LH   + H DL+  N++L      +  +K++DFG++   E 
Sbjct: 112 LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 171
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDM 112
            N F   K   G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  E  
Sbjct: 172 GNEF---KNIFGTPEFVAPEIV---NYEPLGLE--ADMWSIGVITYILLSGASPFLGETK 223
Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
             T      V       Y  SN S+   DFI   L K+P+ R  +++ LEH +I +
Sbjct: 224 QETLTNISAVNYDFDEEY-FSNTSELAKDFIRRLLVKDPKRRMXIAQSLEHSWIKA 278

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  +  EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T   +K 
Sbjct: 127 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKG 186
Query: 64  FLG--SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
             G     WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 187 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 241
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP+ RP   E      I +L ++DLH S
Sbjct: 242 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE------IVNLLKDDLHPS 290

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 10  LKEIITGMVFLHENH--VIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLG 66
            ++I+ G+ FLH     +IHRDL+  N+ +T   G VKI D GL+     +F   K  +G
Sbjct: 135 CRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF--AKAVIG 192
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
           +P + APE         + YD  +DV+A G   +E    + P+ +        QI R   
Sbjct: 193 TPEFXAPEXYE------EKYDESVDVYAFGXCXLEXATSEYPYSECQNAA---QIYRRVT 243
Query: 127 PGLYRAS---NWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
            G+  AS          + I  C+ +N + R  + +LL H F
Sbjct: 244 SGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL-LTKDG-EVKIVDFGLSRETANTF 58
           ++E      +K+I  G+  +H+ +++H DL+  N+L + +D  ++KI+DFGL+R      
Sbjct: 184 LTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRY-KPR 242
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +K K   G+P ++APE++       D      D+W++G+ A  L  G  PF   +    L
Sbjct: 243 EKLKVNFGTPEFLAPEVVN-----YDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETL 297
Query: 119 FQIVRNPPPGLYRASNW----------SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
             I+         A  W          S+   +FI++ L K    R   SE L+HP+++
Sbjct: 298 NNIL---------ACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLS 347

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++ +H+ + L +++ G+ ++H   VIHRDL+ SN+L+ ++ E+KI DFG++R    +  +
Sbjct: 155 LTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAE 214
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MH 113
            + F+     +  + APE+M   H+    Y   ID+W++G    E+   +  F     +H
Sbjct: 215 HQYFMTEYVATRWYRAPELMLSLHE----YTQAIDLWSVGCIFGEMLARRQLFPGKNYVH 270
Query: 114 PTRALFQIVRNPPPGLYRASN------------------WSQHY-------VDFIAECLE 148
             + +  ++  P P + +A                    W   Y       +  +   L 
Sbjct: 271 QLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLR 330
Query: 149 KNPEHRPYMSELLEHPFITSLPEND 173
             P  R   +  L HPF+    + D
Sbjct: 331 FEPSARISAAAALRHPFLAKYHDPD 355

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRE----TAN 56
           E+ I+ I+++I + + +LH   + HRD++  N L +  K  E+K+VDFGLS+E       
Sbjct: 167 EKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG 226
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
            +    T  G+P ++APE++   +   + Y  + D W+ G+    L  G  PF  ++   
Sbjct: 227 EYYGMTTKAGTPYFVAPEVLNTTN---ESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDAD 283
Query: 117 ALFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
            + Q++       +   N+   S    D ++  L +N + R      L+HP+I+   +  
Sbjct: 284 TISQVLNKKL--CFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSDKI 341
Query: 174 LHLS 177
             +S
Sbjct: 342 YKMS 345

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  +  EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T   +K 
Sbjct: 130 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKG 189
Query: 64  FLG--SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
             G     WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 190 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 244
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP+ RP   E      I +L ++DLH S
Sbjct: 245 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE------IVNLLKDDLHPS 293

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG--SPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T   +K   G     
Sbjct: 131 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 190
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 191 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 242
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N     ++ +  C + NP+ RP   E++
Sbjct: 243 LLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEII 276

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKK 61
           Q +  +  EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T  + K 
Sbjct: 129 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG 188
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
              L    WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 189 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 243
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP+ RP   E      I +L ++DLH S
Sbjct: 244 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE------IVNLLKDDLHPS 292

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  ++I DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           KKT  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KKTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  +  EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T   +K 
Sbjct: 130 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKG 189
Query: 64  FLG--SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
             G     WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 190 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 244
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP  RP   E      I +L ++DLH S
Sbjct: 245 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLE------IVNLLKDDLHPS 293

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKK 61
           Q +  +  EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T  + K 
Sbjct: 130 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKG 189
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
              L    WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 190 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 244
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP+ RP   E      I +L ++DLH S
Sbjct: 245 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE------IVNLLKDDLHPS 293

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKK 61
           Q +  +  EI  GM +L+    +HRDL   N ++  D  VKI DFG++R+   T  + K 
Sbjct: 130 QEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG 189
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
              L    WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 190 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 244
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP+ RP   E      I +L ++DLH S
Sbjct: 245 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLE------IVNLLKDDLHPS 293

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 25/191 (13%)
Query: 4   QHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK- 61
           Q I  I+K ++    ++H E ++ HRD++ SN+L+ K+G VK+ DFG   E+    DKK 
Sbjct: 151 QVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFG---ESEYMVDKKI 207
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           K   G+  +M PE         +G   ++D+W+LGI    +     PF        LF  
Sbjct: 208 KGSRGTYEFMPPEFFS-NESSYNG--AKVDIWSLGICLYVMFYNVVPFSLKISLVELFNN 264
Query: 122 VRNPP------------PGLYRASNWSQHY-----VDFIAECLEKNPEHRPYMSELLEHP 164
           +R               P   + S  S ++     +DF+   L KNP  R    + L+H 
Sbjct: 265 IRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHE 324
Query: 165 FITSLPENDLH 175
           ++      DL 
Sbjct: 325 WLADTNIEDLR 335

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           + ++I++ + + H + V+HRDL+  NVLL      KI DFGLS   ++  +  +T  GSP
Sbjct: 116 LFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-EFLRTSCGSP 174
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVRNPPP 127
           ++ APE++    +   G +  +D+W+ G+    L  G  PF+D H PT  LF+ +R    
Sbjct: 175 NYAAPEVI--SGRLYAGPE--VDIWSCGVILYALLCGTLPFDDEHVPT--LFKKIRG--- 225
Query: 128 GLYRASNWSQHYV-DFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
           G++    +    V   +   L+ +P  R  + ++ EH  F   LP
Sbjct: 226 GVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 270

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHP 114
             + K  F G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  +    
Sbjct: 172 GVEFKNIF-GTPEFVAPEIV---NYEPLGLEA--DMWSIGVITYILLSGASPFLGDTKQE 225
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           T A    V       +  S  S+   DFI + L K    R  + E L HP+IT
Sbjct: 226 TLANITAVSYDFDEEF-FSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANT 57
           SE+  + +L  I   + +LH   V+HRDL+ SN+L   +      ++I DFG +++    
Sbjct: 114 SEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAE 173
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                T   + +++APE++     E  GYD   D+W+LG+    +  G  PF +  P   
Sbjct: 174 NGLLMTPCYTANFVAPEVL-----ERQGYDAACDIWSLGVLLYTMLTGYTPFAN-GPDDT 227
Query: 118 LFQIVRNPPPGLYRASN--W---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT---SL 169
             +I+     G +  S   W   S    D +++ L  +P  R   + +L HP+I     L
Sbjct: 228 PEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQL 287
Query: 170 PENDLH 175
           P+  L+
Sbjct: 288 PQYQLN 293

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG--SPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T   +K   G     
Sbjct: 140 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 199
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 200 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 251
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 252 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 285

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHP 114
             + K  F G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  +    
Sbjct: 172 GVEFKNIF-GTPEFVAPEIV---NYEPLGLEA--DMWSIGVITYILLSGASPFLGDTKQE 225
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           T A    V       +  S  S+   DFI + L K    R  + E L HP+IT
Sbjct: 226 TLANITAVSYDFDEEF-FSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H+N++IHRD++  NVLL        VK+ DFG++ +   + 
Sbjct: 128 SEAVASHYMRQILEALRYCHDNNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGESG 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                 +G+P +MAPE+++      + Y   +DVW  G+    L  G  PF      R  
Sbjct: 188 LVAGGRVGTPHFMAPEVVK-----REPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLF 241
Query: 119 FQIVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS----- 168
             I++    G Y+      S+ S+   D +   L  +P  R  + E L HP++       
Sbjct: 242 EGIIK----GKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYA 297
Query: 169 ----LPENDLHLSTVNCQYK 184
               LPE    L   N + K
Sbjct: 298 YKIHLPETVEQLRKFNARRK 317

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 37/198 (18%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I F++ +++ G+ ++H   +IHRDL+  N+ + +D E+KI+DFGL+R+     D 
Sbjct: 125 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA----DS 180
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MHPTR 116
           +        W  APE++    +    Y   +D+W++G    E+  GK  F+    +   +
Sbjct: 181 EMXGXVVTRWYRAPEVILNWMR----YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLK 236
Query: 117 ALFQIVRNPP-------------------PGLYRA------SNWSQHYVDFIAECLEKNP 151
            + ++   PP                   P L +       +N S   V+ + + L  + 
Sbjct: 237 EIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDA 296
Query: 152 EHRPYMSELLEHPFITSL 169
           E R    E L HP+  SL
Sbjct: 297 EQRVTAGEALAHPYFESL 314

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++ +H+ + L +++ G+ ++H   VIHRDL+ SN+L+ ++ E+KI DFG++R    +  +
Sbjct: 156 LTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAE 215
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MH 113
            + F+     +  + APE+M   H+    Y   ID+W++G    E+   +  F     +H
Sbjct: 216 HQYFMTEYVATRWYRAPELMLSLHE----YTQAIDLWSVGCIFGEMLARRQLFPGKNYVH 271
Query: 114 PTRALFQIVRNPPPGLYRA 132
             + +  ++  P P + +A
Sbjct: 272 QLQLIMMVLGTPSPAVIQA 290

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 168 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 227
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 228 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 279
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 280 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 313

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
             + K  F G+P ++APEI+   + E  G +   D+W++G+    L  G  PF       
Sbjct: 172 GVEFKNIF-GTPEFVAPEIV---NYEPLGLEA--DMWSIGVITYILLSGASPFLGDTKQE 225
Query: 117 ALFQIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            L  I     +     +  S+ S+   DFI + L K    R  + E L HP+IT
Sbjct: 226 TLANITSVSYDFDEEFF--SHTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 146 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 205
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 206 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 257
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 258 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 291

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 146 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 205
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 206 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 257
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 258 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 291

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 139 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 198
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 199 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 250
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 251 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 284

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 139 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 198
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 199 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 250
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 251 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 284

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 140 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 199
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 200 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 251
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 252 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 285

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHP 114
             + K  F G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  +    
Sbjct: 172 GVEFKNIF-GTPEFVAPEIV---NYEPLGLEA--DMWSIGVITYILLSGASPFLGDTKQE 225
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           T A    V       +  S  S+   DFI + L K    R  + E L HP+IT
Sbjct: 226 TLANITAVSYDFDEEF-FSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 136 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 195
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 196 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 247
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 248 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 281

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 45/206 (21%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA+T   
Sbjct: 121 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TASTNFM 179
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED--------- 111
              ++ +  + APE++        GY   +D+W++G    EL  G   F+          
Sbjct: 180 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNK 234
Query: 112 ---------------MHPTRALFQIVRNPPPGLY---------------RASNWSQHYVD 141
                          + PT   +   R   PG+                R    +    D
Sbjct: 235 VIEQLGTPSAEFMAALQPTVRNYVENRPAYPGIAFEELFPDWIFPSESERDKIKTSQARD 294
Query: 142 FIAECLEKNPEHRPYMSELLEHPFIT 167
            +++ L  +P+ R  + E L HP+IT
Sbjct: 295 LLSKMLVIDPDKRISVDEALRHPYIT 320

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R+  N  D      G+    
Sbjct: 153 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN--DSNYVVKGNARLP 210
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y    DVW+ GI   EL   G  P+  M      +++++  
Sbjct: 211 VKWMAPESIFNC------VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 264
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              L      ++ Y D +  C + +P  RP   ++++
Sbjct: 265 FRMLSPEHAPAEMY-DIMKTCWDADPLKRPTFKQIVQ 300

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 137 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 196
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 197 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 248
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 249 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 282

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T  + K    L    
Sbjct: 133 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 192
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 193 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 244
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N      + +  C + NP+ RP   E++
Sbjct: 245 LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 278

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++  G     GY   +D+W++G+   E+  G
Sbjct: 182 MTPYVVTRYYRAPEVI-LGM----GYKENVDIWSVGVIMGEMIKG 221

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R+  N  D      G+    
Sbjct: 171 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN--DSNYVVKGNARLP 228
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y    DVW+ GI   EL   G  P+  M      +++++  
Sbjct: 229 VKWMAPESIFNC------VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 282
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              L      ++ Y D +  C + +P  RP   ++++
Sbjct: 283 FRMLSPEHAPAEMY-DIMKTCWDADPLKRPTFKQIVQ 318

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R+  N  D      G+    
Sbjct: 176 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN--DSNYVVKGNARLP 233
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y    DVW+ GI   EL   G  P+  M      +++++  
Sbjct: 234 VKWMAPESIFNC------VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 287
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              L      ++ Y D +  C + +P  RP   ++++
Sbjct: 288 FRMLSPEHAPAEMY-DIMKTCWDADPLKRPTFKQIVQ 323

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+ + +     ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    
Sbjct: 154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYY 213
Query: 61  KKTFLGS--PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
           K T  G     WMAPE +      V  Y ++ DVW+ G+   E+   G  P+  + P   
Sbjct: 214 KNTTNGRLPVKWMAPEAL---FDRV--YTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEE 267
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           LF++++     + + +N +      + +C    P  RP   +L+E
Sbjct: 268 LFKLLKE-GHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVE 311

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
             + K  F G+P ++APEI+   + E  G +   D+W++G+    L  G  PF       
Sbjct: 172 GVEFKNIF-GTPEFVAPEIV---NYEPLGLEA--DMWSIGVITYILLSGASPFLGDTKQE 225
Query: 117 ALFQIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            L  I     +     +  S+ S+   DFI + L K    R  + E L HP+IT
Sbjct: 226 TLANITSVSYDFDEEFF--SHTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G+   E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGVIMGEMIKG 221

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 19/176 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
             + K  F G+P ++APEI+   + E  G +   D+W++G+    L  G  PF  +  T+
Sbjct: 172 GVEFKNIF-GTPEFVAPEIV---NYEPLGLEA--DMWSIGVITYILLSGASPF--LGDTK 223
Query: 117 ALFQIVRNPPPGLYR-----ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
              + + N     Y       S+ S+   DFI + L K    R  + E L HP+IT
Sbjct: 224 Q--ETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 195
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 196 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 250
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 251 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 295

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 16  GMVFLHE---NHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKTFLGSPSWM 71
           G+ +LH      +IHRDL+  N+LL   G V KI DFG + +        K   GS +WM
Sbjct: 115 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNK---GSAAWM 171
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--RALFQIVRNPPPGL 129
           APE+      E   Y  + DV++ GI   E+   + PF+++     R ++ +     P L
Sbjct: 172 APEVF-----EGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPL 226
Query: 130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            +  N  +     +  C  K+P  RP M E+++
Sbjct: 227 IK--NLPKPIESLMTRCWSKDPSQRPSMEEIVK 257

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 195
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 196 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 250
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 251 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 295

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R+  N  D      G+    
Sbjct: 169 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN--DSNYVVKGNARLP 226
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y    DVW+ GI   EL   G  P+  M      +++++  
Sbjct: 227 VKWMAPESIFNC------VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 280
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              L      ++ Y D +  C + +P  RP   ++++
Sbjct: 281 FRMLSPEHAPAEMY-DIMKTCWDADPLKRPTFKQIVQ 316

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 16  GMVFLHE---NHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKTFLGSPSWM 71
           G+ +LH      +IHRDL+  N+LL   G V KI DFG + +        K   GS +WM
Sbjct: 114 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNK---GSAAWM 170
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--RALFQIVRNPPPGL 129
           APE+      E   Y  + DV++ GI   E+   + PF+++     R ++ +     P L
Sbjct: 171 APEVF-----EGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPL 225
Query: 130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            +  N  +     +  C  K+P  RP M E+++
Sbjct: 226 IK--NLPKPIESLMTRCWSKDPSQRPSMEEIVK 256

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+    + ++I++G+ + H + V+HRDL+  NVLL      KI DFGLS   ++  + 
Sbjct: 113 LDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-EF 171
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALF 119
            +   GSP++ APE++    +   G +  +D+W+ G+    L  G  PF+D H PT  LF
Sbjct: 172 LRXSCGSPNYAAPEVI--SGRLYAGPE--VDIWSSGVILYALLCGTLPFDDDHVPT--LF 225
Query: 120 QIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPE 171
           + + +   G++    + +   +  +   L+ +P  R  + ++ EH  F   LP+
Sbjct: 226 KKICD---GIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPK 276

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPS 69
           ++  GM FL     IHRDL   N+LL+++  VKI DFGL+R+     D  +K        
Sbjct: 207 QVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLK 266
Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP 127
           WMAPE +       D  Y  + DVW+ G+   E+   G  P+  +         +R    
Sbjct: 267 WMAPESI------FDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLRE--- 317
Query: 128 GL-YRASNWSQHYV-DFIAECLEKNPEHRPYMSELLE 162
           G+  RA  +S   +   + +C  ++P+ RP  +EL+E
Sbjct: 318 GMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELVE 354

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 204
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 205 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 260 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 304

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 43/207 (20%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-------- 52
           +S+ HI + + + +  +  LH ++VIHRDL+ SN+L+  + ++K+ DFGL+R        
Sbjct: 109 LSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAAD 168
Query: 53  --ETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF- 109
             E          F+ +  + APE+M    K    Y   +DVW+ G    EL   +P F 
Sbjct: 169 NSEPTGQQSGMVEFVATRWYRAPEVMLTSAK----YSRAMDVWSCGCILAELFLRRPIFP 224
Query: 110 --EDMHPTRALFQIVRNP-----------PPG--------LYRASNWSQHY-------VD 141
             +  H    +F I+  P           P          +Y A+   + +       +D
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGID 284
Query: 142 FIAECLEKNPEHRPYMSELLEHPFITS 168
            +   L  +P  R    E LEHP++ +
Sbjct: 285 LLQRMLVFDPAKRITAKEALEHPYLQT 311

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPS 69
           EI  GM +L+ N  +HRDL   N  + +D  VKI DFG++R+   T  + K    L    
Sbjct: 133 EIADGMAYLNANKFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 192
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WM+PE ++ G      +    DVW+ G+   E+    + P++ +   + L  ++     G
Sbjct: 193 WMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG---G 244
Query: 129 LY-RASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L  +  N     ++ +  C + NP+ RP   E++
Sbjct: 245 LLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEII 278

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 204
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 205 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 260 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 304

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 188 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 247
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 248 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 302
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 303 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 347

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 195
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 196 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 250
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 251 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 295

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 136 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 195
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 196 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 250
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 251 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 295

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE+ I +++ +++ G+ ++H   V+HRDL+  N+ + +D E+KI+DFGL+R      D +
Sbjct: 124 SEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA----DAE 179
Query: 62  KTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            T      W  APE++         Y+  +D+W++G    E+  GK  F+       L Q
Sbjct: 180 MTGYVVTRWYRAPEVILSWMH----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQ 235
Query: 121 IVR 123
           I++
Sbjct: 236 ILK 238

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 147 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 206
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 207 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 261
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 262 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 306

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 195 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 254
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 255 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 309
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 310 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 354

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 31/181 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           MSE      ++++  G+  +HEN+ +H DL+  N++ T  +  E+K++DFGL   TA+  
Sbjct: 146 MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGL---TAHLD 202
Query: 59  DKK--KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
            K+  K   G+  + APE+     K V  Y    D+W++G+ +  L  G  PF   +   
Sbjct: 203 PKQSVKVTTGTAEFAAPEVAEG--KPVGYY---TDMWSVGVLSYILLSGLSPFGGENDDE 257
Query: 117 ALFQIVRNPPPGLYRASNW----------SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            L  +         ++ +W          S+   DFI + L  +P  R  + + LEHP++
Sbjct: 258 TLRNV---------KSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWL 308
Query: 167 T 167
           T
Sbjct: 309 T 309

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 31/181 (17%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           MSE      ++++  G+  +HEN+ +H DL+  N++ T  +  E+K++DFGL   TA+  
Sbjct: 252 MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGL---TAHLD 308
Query: 59  DKK--KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
            K+  K   G+  + APE+     K V  Y    D+W++G+ +  L  G  PF   +   
Sbjct: 309 PKQSVKVTTGTAEFAAPEVAEG--KPVGYY---TDMWSVGVLSYILLSGLSPFGGENDDE 363
Query: 117 ALFQIVRNPPPGLYRASNW----------SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            L  +         ++ +W          S+   DFI + L  +P  R  + + LEHP++
Sbjct: 364 TLRNV---------KSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWL 414
Query: 167 T 167
           T
Sbjct: 415 T 415

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 197 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 256
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 257 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 311
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 312 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 356

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 182 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 241
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 242 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 296
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 297 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 341

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 190 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 249
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 250 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 304
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 305 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 349

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETAN 56
            SE+  + +L  I   + +LH   V+HRDL+ SN+L   +      ++I DFG +++   
Sbjct: 113 FSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA 172
Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
                 T   + +++APE++     E  GYD   D+W+LG+       G  PF +  P  
Sbjct: 173 ENGLLXTPCYTANFVAPEVL-----ERQGYDAACDIWSLGVLLYTXLTGYTPFAN-GPDD 226
Query: 117 ALFQIVRNPPPGLYRASN--W---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT---S 168
              +I+     G +  S   W   S    D +++ L  +P  R   + +L HP+I     
Sbjct: 227 TPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKXLHVDPHQRLTAALVLRHPWIVHWDQ 286
Query: 169 LPENDLH 175
           LP+  L+
Sbjct: 287 LPQYQLN 293

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 204
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 205 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 260 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 304

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R   N  D      G+    
Sbjct: 176 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARHIKN--DSNYVVKGNARLP 233
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y    DVW+ GI   EL   G  P+  M      +++++  
Sbjct: 234 VKWMAPESIFNC------VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 287
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              L      ++ Y D +  C + +P  RP   ++++
Sbjct: 288 FRMLSPEHAPAEMY-DIMKTCWDADPLKRPTFKQIVQ 323

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE+ I +++ +++ G+ ++H   V+HRDL+  N+ + +D E+KI+DFGL+R      D +
Sbjct: 142 SEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA----DAE 197
Query: 62  KTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            T      W  APE++         Y+  +D+W++G    E+  GK  F+       L Q
Sbjct: 198 MTGYVVTRWYRAPEVILSWMH----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQ 253
Query: 121 IVR 123
           I++
Sbjct: 254 ILK 256

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 145 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDX 204
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 205 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 260 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 304

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 43/207 (20%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-------- 52
           +S+ HI + + + +  +  LH ++VIHRDL+ SN+L+  + ++K+ DFGL+R        
Sbjct: 109 LSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAAD 168
Query: 53  --ETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF- 109
             E          ++ +  + APE+M    K    Y   +DVW+ G    EL   +P F 
Sbjct: 169 NSEPTGQQSGMTEYVATRWYRAPEVMLTSAK----YSRAMDVWSCGCILAELFLRRPIFP 224
Query: 110 --EDMHPTRALFQIVRNP-----------PPG--------LYRASNWSQHY-------VD 141
             +  H    +F I+  P           P          +Y A+   + +       +D
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGID 284
Query: 142 FIAECLEKNPEHRPYMSELLEHPFITS 168
            +   L  +P  R    E LEHP++ +
Sbjct: 285 LLQRMLVFDPAKRITAKEALEHPYLQT 311

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 145 LTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDX 204
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 205 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 259
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 260 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 304

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKK 61
           Q +  +  EI  GM +L+    +HR+L   N ++  D  VKI DFG++R+   T  + K 
Sbjct: 131 QEMIQMAAEIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG 190
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
              L    WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 191 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 245
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP  RP   E      I +L ++DLH S
Sbjct: 246 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLE------IVNLLKDDLHPS 294

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 221

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 125 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 183
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              F+ +  + APE++  G     GY   +D+W++G    E+  G
Sbjct: 184 MVPFVVTRYYRAPEVI-LGM----GYKENVDIWSVGCIMGEMIKG 223

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKK 61
           Q +  +  EI  GM +L+    +HR+L   N ++  D  VKI DFG++R+   T  + K 
Sbjct: 130 QEMIQMAAEIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKG 189
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
              L    WMAPE ++ G      +    D+W+ G+   E+    + P++ +   + L  
Sbjct: 190 GKGLLPVRWMAPESLKDGV-----FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 244
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           ++      L +  N  +   D +  C + NP  RP   E      I +L ++DLH S
Sbjct: 245 VMDG--GYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLE------IVNLLKDDLHPS 293

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 221

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 221

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +  +F+G+  +++PE++              D+WALG    +L  G PPF
Sbjct: 190 -RANSFVGTAQYVSPELL-----TEKSASKSSDLWALGCIIYQLVAGLPPF 234

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 141 LTLEHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 200
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 201 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 255
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 256 FCRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 300

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 36/191 (18%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFL 65
           I  ++ +++ G+ FLH + V+HRDL+  N+L+T  G++K+ DFGL+R    +F    T +
Sbjct: 122 IKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR--IYSFQMALTSV 179
Query: 66  GSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
               W  APE++         Y   +D+W++G    E+   KP F        L +I+  
Sbjct: 180 VVTLWYRAPEVLL-----QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDV 234
Query: 125 PPPGLYRASNWSQHYV--------------------------DFIAECLEKNPEHRPYMS 158
              GL    +W +                             D + +CL  NP  R    
Sbjct: 235 --IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY 292
Query: 159 ELLEHPFITSL 169
             L HP+   L
Sbjct: 293 SALSHPYFQDL 303

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 36/185 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSW- 70
           +++ G+ FLH + V+HRDL+  N+L+T  G++K+ DFGL+R    +F    T +    W 
Sbjct: 128 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR--IYSFQMALTSVVVTLWY 185
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY 130
            APE++         Y   +D+W++G    E+   KP F        L +I+     GL 
Sbjct: 186 RAPEVLL-----QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDV--IGLP 238
Query: 131 RASNWSQHYV--------------------------DFIAECLEKNPEHRPYMSELLEHP 164
              +W +                             D + +CL  NP  R      L HP
Sbjct: 239 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHP 298
Query: 165 FITSL 169
           +   L
Sbjct: 299 YFQDL 303

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           + ++I++ + + H + V+HRDL+  NVLL      KI DFGLS   ++  +  +   GSP
Sbjct: 116 LFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-EFLRDSCGSP 174
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVRNPPP 127
           ++ APE++    +   G +  +D+W+ G+    L  G  PF+D H PT  LF+ +R    
Sbjct: 175 NYAAPEVI--SGRLYAGPE--VDIWSCGVILYALLCGTLPFDDEHVPT--LFKKIRG--- 225
Query: 128 GLYRASNWSQHYV-DFIAECLEKNPEHRPYMSELLEHP-FITSLP 170
           G++    +    V   +   L+ +P  R  + ++ EH  F   LP
Sbjct: 226 GVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP 270

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM ++   + IHRDLR +NVL+++    KI DFGL+R    N +  ++       W
Sbjct: 118 QIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 177
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF---EDMHPTRALFQIVRNPP 126
            APE +  G      +  + DVW+ GI   E+   GK P+    +     AL Q  R P 
Sbjct: 178 TAPEAINFGC-----FTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMP- 231
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
               R  N      D +  C ++  E RP   Y+  +L+
Sbjct: 232 ----RVENCPDELYDIMKMCWKEKAEERPTFDYLQSVLD 266

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTFDKKKT 63
           F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+     +  +
Sbjct: 133 FYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA--RANS 190
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 191 FVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 231

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 43/207 (20%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S+ HI + + + +  +  LH ++VIHRDL+ SN+L+  + ++K+ DFGL+R    +   
Sbjct: 109 LSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAAD 168
Query: 61  KKTFLGSPSWM----------APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF- 109
                G  S M          APE+M    K    Y   +DVW+ G    EL   +P F 
Sbjct: 169 NSEPTGQQSGMTEXVATRWYRAPEVMLTSAK----YSRAMDVWSCGCILAELFLRRPIFP 224
Query: 110 --EDMHPTRALFQIVRNP-----------PPG--------LYRASNWSQHY-------VD 141
             +  H    +F I+  P           P          +Y A+   + +       +D
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGID 284
Query: 142 FIAECLEKNPEHRPYMSELLEHPFITS 168
            +   L  +P  R    E LEHP++ +
Sbjct: 285 LLQRMLVFDPAKRITAKEALEHPYLQT 311

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 221

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 221

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R     F  
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNF-M 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
              ++ +  + APE++        GY   +D+W++G    EL  G   F+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYAANVDIWSVGCIMGELVKGCVIFQ 226

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 132 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 190
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +  +F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 191 -RANSFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 235

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 221

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 124 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
              ++ +  + APE++        GY   +D+W++G    E+  G
Sbjct: 183 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEMIKG 222

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +TF      
Sbjct: 111 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGA 170
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  + P++    + +
Sbjct: 171 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEK 225
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 226 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 10/152 (6%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKKTFLGSPS 69
           +I  GM +L E  ++HRDL   N+L+ +  ++KI DFGLSR+    +++ K+        
Sbjct: 158 QISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVK 217
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMA E +   H     Y  + DVW+ G+   E+   G  P+  + P R LF +++     
Sbjct: 218 WMAIESL-FDHI----YTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER-LFNLLKT-GHR 270
Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           + R  N S+     + +C ++ P+ RP  +++
Sbjct: 271 MERPDNCSEEMYRLMLQCWKQEPDKRPVFADI 302

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 128 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 186
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 187 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 231

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D++ +
Sbjct: 120 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEETS 177
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
            +GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 178 SVGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 232
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            I +     LYR    S+     +  C  +  + RP    LL +
Sbjct: 233 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN 274

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 17/170 (10%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D 
Sbjct: 141 LTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDY 200
Query: 60  -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE----DMH 113
            +K        WMAPE +      V  Y  + DVW+ G+   E+   G  P+     D  
Sbjct: 201 VRKGDARLPLKWMAPETI---FDRV--YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 255
Query: 114 PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             R L +  R   P  Y      Q  +D    C    P  RP  SEL+EH
Sbjct: 256 FXRRLKEGTRMRAPD-YTTPEMYQTMLD----CWHGEPSQRPTFSELVEH 300

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSW- 70
           +++ G+ FLH + V+HRDL+  N+L+T  G++K+ DFGL+R    +F    T +    W 
Sbjct: 128 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR--IYSFQMALTSVVVTLWY 185
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY 130
            APE++         Y   +D+W++G    E+   KP F        L +I+     GL 
Sbjct: 186 RAPEVLL-----QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDV--IGLP 238
Query: 131 RASNWSQHYV--------------------------DFIAECLEKNPEHRPYMSELLEHP 164
              +W +                             D + +CL  NP  R      L HP
Sbjct: 239 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHP 298
Query: 165 F 165
           +
Sbjct: 299 Y 299

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 188 -RANAFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 232

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 161 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 219
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 220 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 256

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 161 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 219
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 220 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 256

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E    F + E++  +  +H+ H +HRD++  NVLL  +G +++ DFG   +  +    
Sbjct: 172 LPEDMARFYIGEMVLAIDSIHQLHYVHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTV 231
Query: 61  KKTF-LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           + +  +G+P +++PEI++     +  Y    D W+LG+   E+  G+ PF
Sbjct: 232 QSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPF 281

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E    F + E++  +  +H+ H +HRD++  NVLL  +G +++ DFG   +  +    
Sbjct: 188 LPEDMARFYIGEMVLAIDSIHQLHYVHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTV 247
Query: 61  KKTF-LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           + +  +G+P +++PEI++     +  Y    D W+LG+   E+  G+ PF
Sbjct: 248 QSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPF 297

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 188 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 232

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 122 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 180
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 181 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 217

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 109 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 167
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 168 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 212

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 136 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 194
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 195 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 239

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 108 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 166
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 167 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 211

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 124 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 183 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 219

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 188 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 232

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 129 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 188 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 232

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 116 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 174
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 175 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 211

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 117 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 176 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 212

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 190 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 234

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 113 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 171
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 172 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 216

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 117 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 176 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 212

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 107 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 165
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 166 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 210

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 124 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 183 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 219

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 132 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 190
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 191 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 235

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 106 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 164
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 165 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 209

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 134 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 192
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 193 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 237

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 115 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 173
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 174 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 233
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 234 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 277

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 190 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 234

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++              D+WALG    +L  G PPF
Sbjct: 190 -RANXFVGTAQYVSPELL-----TEKSAXKSSDLWALGCIIYQLVAGLPPF 234

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 190 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 234

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 134 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 192
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 193 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 252
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 253 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 296

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFG----LSRETANTF 58
           E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG    LS E+    
Sbjct: 131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA- 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +   F+G+  +++PE++     E     +  D+WALG    +L  G PPF
Sbjct: 190 -RANXFVGTAQYVSPELL----TEKSACKSS-DLWALGCIIYQLVAGLPPF 234

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSP 68
           ++I G+ +LH   ++H+D++  N+LLT  G +KI   G++ E  + F   D  +T  GSP
Sbjct: 117 QLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVA-EALHPFAADDTCRTSQGSP 175
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG 128
           ++  PEI   G     G+  ++D+W+ G+T   +  G  PFE  +    ++++  N   G
Sbjct: 176 AFQPPEIAN-GLDTFSGF--KVDIWSAGVTLYNITTGLYPFEGDN----IYKLFENIGKG 228
Query: 129 LYR-ASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            Y    +      D +   LE  P  R  + ++ +H
Sbjct: 229 SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 118 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 176
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 177 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 236
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 237 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 280

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 34/179 (18%)
Query: 9   ILKEIITGMVFLH--------ENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---RETANT 57
           I+  I +G+  LH        +  + HRDL+  N+L+ K+G+  I D GL+    ++ N 
Sbjct: 110 IVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQ 169
Query: 58  FD-KKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELG----------D 104
            D      +G+  +MAPE++     +VD +D+  R+D+WA G+   E+           D
Sbjct: 170 LDVGNNPRVGTKRYMAPEVLD-ETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVED 228
Query: 105 GKPPFEDMHPTRALFQIVRNPP---------PGLYRASNWSQHYVDFIAECLEKNPEHR 154
            KPPF D+ P    F+ +R            P  + +          + EC  +NP  R
Sbjct: 229 YKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSAR 287

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 114 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 172
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 173 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 232
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 233 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 276

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D+  +
Sbjct: 111 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEYTS 168
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
            +GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 169 SVGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 223
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            I +     LYR    S+     +  C  +  + RP    LL
Sbjct: 224 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILL 263

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D+  +
Sbjct: 100 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEYTS 157
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
            +GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 158 SVGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 212
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            I +     LYR    S+     +  C  +  + RP    LL
Sbjct: 213 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILL 252

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 34/179 (18%)
Query: 9   ILKEIITGMVFLH--------ENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---RETANT 57
           I+  I +G+  LH        +  + HRDL+  N+L+ K+G+  I D GL+    ++ N 
Sbjct: 139 IVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQ 198
Query: 58  FD-KKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELG----------D 104
            D      +G+  +MAPE++     +VD +D+  R+D+WA G+   E+           D
Sbjct: 199 LDVGNNPRVGTKRYMAPEVLD-ETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVED 257
Query: 105 GKPPFEDMHPTRALFQIVRNPP---------PGLYRASNWSQHYVDFIAECLEKNPEHR 154
            KPPF D+ P    F+ +R            P  + +          + EC  +NP  R
Sbjct: 258 YKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSAR 316

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 34/179 (18%)
Query: 9   ILKEIITGMVFLH--------ENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---RETANT 57
           I+  I +G+  LH        +  + HRDL+  N+L+ K+G+  I D GL+    ++ N 
Sbjct: 110 IVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQ 169
Query: 58  FD-KKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELG----------D 104
            D      +G+  +MAPE++     +VD +D+  R+D+WA G+   E+           D
Sbjct: 170 LDVGNNPRVGTKRYMAPEVLD-ETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVED 228
Query: 105 GKPPFEDMHPTRALFQIVRNPP---------PGLYRASNWSQHYVDFIAECLEKNPEHR 154
            KPPF D+ P    F+ +R            P  + +          + EC  +NP  R
Sbjct: 229 YKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSAR 287

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGT--- 178
Query: 61  KKTFLGSPS-----WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG 105
             +F+ +P      + APE++  G     GY   +D+W++G    E+  G
Sbjct: 179 --SFMMTPEVVTRYYRAPEVI-LGM----GYKENVDIWSVGCIMGEMIKG 221

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 162 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 220
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 280
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 281 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 324

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 29/127 (22%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++EQH+  IL  ++ G  F+HE+ +IHRDL+ +N LL +D  VKI DFGL+R   +  D 
Sbjct: 128 LTEQHVKTILYNLLLGEKFIHESGIIHRDLKPANCLLNQDCSVKICDFGLARTINSDKDI 187
Query: 60  -----------------------KKKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWAL 95
                                  K+ T      W  APE++       + Y N ID+W+ 
Sbjct: 188 HIVNDLEEKEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQ----ENYTNSIDIWST 243
Query: 96  GITAIEL 102
           G    EL
Sbjct: 244 GCIFAEL 250

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D+  +
Sbjct: 104 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEYTS 161
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
            +GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 162 SVGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 216
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            I +     LYR    S+     +  C  +  + RP    LL
Sbjct: 217 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILL 256

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 116 LDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR-TAGTSFM 174
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 175 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 211

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D+  +
Sbjct: 105 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEYTS 162
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
            +GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 163 SVGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 217
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            I +     LYR    S+     +  C  +  + RP    LL
Sbjct: 218 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILL 257

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLAR-TAGTSFM 181
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 182 MTPYVVTRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 162 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAV 220
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 280
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 281 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 324

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 87/170 (51%), Gaps = 20/170 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E   ++I +++++ + +L    +IHRD++  N+++ +D  +K++DFG    +A   ++
Sbjct: 127 LDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFG----SAAYLER 182
Query: 61  KK---TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
            K   TF G+  + APE++             +++W+LG+T   L   + PF ++  T  
Sbjct: 183 GKLFYTFCGTIEYCAPEVLMGNPYR----GPELEMWSLGVTLYTLVFEENPFCELEET-- 236
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
             +   +PP   Y     S+  +  ++  L+  PE R  + +L+  P++T
Sbjct: 237 -VEAAIHPP---YLV---SKELMSLVSGLLQPVPERRTTLEKLVTDPWVT 279

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D+  +
Sbjct: 120 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEYTS 177
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
            +GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 178 SVGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 232
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            I +     LYR    S+     +  C  +  + RP    LL +
Sbjct: 233 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN 274

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T   K + +G+ 
Sbjct: 162 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 220
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 280
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 281 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 324

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA-NTFDKKKTFLGSPSW 70
           +I  GM ++   + IHRDLR +NVL+++    KI DFGL+R    N +  ++       W
Sbjct: 117 QIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 176
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF---EDMHPTRALFQIVRNPP 126
            APE +  G      +  + +VW+ GI   E+   GK P+    +     AL Q  R P 
Sbjct: 177 TAPEAINFGC-----FTIKSNVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMP- 230
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRP---YMSELLE 162
               R  N      D +  C ++  E RP   Y+  +L+
Sbjct: 231 ----RMENCPDELYDIMKMCWKEKAEERPTFDYLQSVLD 265

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFD 59
           + E+   F L E++  +  +H+ H +HRD++  N+L+  +G +++ DFG   +   +   
Sbjct: 172 LPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV 231
Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           +    +G+P +++PEI++        Y    D W+LG+   E+  G+ PF
Sbjct: 232 QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPF 281

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRETANTF 58
           MSE  +   +++   G+  +HE+ ++H D++  N++    K   VKI+DFGL+ +  N  
Sbjct: 146 MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL-NPD 204
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +  K    +  + APEI+    +E  G+    D+WA+G+    L  G  PF        L
Sbjct: 205 EIVKVTTATAEFAAPEIV---DREPVGF--YTDMWAIGVLGYVLLSGLSPFAGEDDLETL 259
Query: 119 FQIVRNPPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
             + R        A S+ S    DFI   L+K P  R  + + LEHP++
Sbjct: 260 QNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWL 308

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 117 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 175
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 176 MTPYVVTRYYRAPEVILGM-----GYKENVDLWSVGCIMGEM 212

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 128 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 186
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              ++ +  + APE++        GY   +D+W++G    E+
Sbjct: 187 MTPYVVTRYYRAPEVILGM-----GYKENVDLWSVGCIMGEM 223

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K  +    W 
Sbjct: 297 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV---KWT 353
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF-----EDMHPTRALFQIVRNP 125
           APE +R        +  + DVW+ GI   E+   G+ P+     +D+ P       +  P
Sbjct: 354 APEALR-----EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAP 408
Query: 126 ---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
              PP +Y          D +  C   +   RP   +L E   +  +  ++LHL
Sbjct: 409 DGCPPAVY----------DVMKNCWHLDAATRPTFLQLREQ--LEHIRTHELHL 450

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-------ETANTF 58
           I  +++ ++ G+ ++H N ++HRD++ +NVL+T+DG +K+ DFGL+R          N +
Sbjct: 127 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 186
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP 107
             +   L    W  P  +  G ++   Y   ID+W  G    E+    P
Sbjct: 187 XNRVVTL----WYRPPELLLGERD---YGPPIDLWGAGCIMAEMWTRSP 228

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           +I  GM +L E  ++HRDL   N+L+ +  ++KI DFGLSR+        K   G     
Sbjct: 158 QISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVK 217
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMA E +   H     Y  + DVW+ G+   E+   G  P+  + P R LF +++     
Sbjct: 218 WMAIESL-FDHI----YTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER-LFNLLKT-GHR 270
Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           + R  N S+     + +C ++ P+ RP  +++
Sbjct: 271 MERPDNCSEEMYRLMLQCWKQEPDKRPVFADI 302

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PS 69
           +I  GM +L E  ++HRDL   N+L+ +  ++KI DFGLSR+        K   G     
Sbjct: 158 QISQGMQYLAEMSLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVK 217
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPG 128
           WMA E +   H     Y  + DVW+ G+   E+   G  P+  + P R LF +++     
Sbjct: 218 WMAIESL-FDHI----YTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER-LFNLLKT-GHR 270
Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           + R  N S+     + +C ++ P+ RP  +++
Sbjct: 271 MERPDNCSEEMYRLMLQCWKQEPDKRPVFADI 302

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S Q +     ++  GM +L +   IHRDL   N+L+ ++   KI DFGLSR        
Sbjct: 129 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYV 186
Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
           KKT    P  WMA E +         Y    DVW+ G+   E+   G  P+  M      
Sbjct: 187 KKTMGRLPVRWMAIESL-----NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM----TC 237
Query: 119 FQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            ++    P G  L +  N      D + +C  + P  RP  +++L
Sbjct: 238 AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 282

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET---ANTFDKKKTFLGSPSWMA 72
           G+ FLHENH IHRD++ +N+LL +    KI DFGL+R +   A T    +  +G+ ++MA
Sbjct: 145 GINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSR-IVGTTAYMA 203
Query: 73  PEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
           PE +R    E+     + D+++ G+  +E+  G P  ++
Sbjct: 204 PEALR---GEITP---KSDIYSFGVVLLEIITGLPAVDE 236

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-------ETANTF 58
           I  +++ ++ G+ ++H N ++HRD++ +NVL+T+DG +K+ DFGL+R          N +
Sbjct: 126 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 185
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP 107
             +   L    W  P  +  G ++   Y   ID+W  G    E+    P
Sbjct: 186 XNRVVTL----WYRPPELLLGERD---YGPPIDLWGAGCIMAEMWTRSP 227

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S Q +     ++  GM +L +   IHRDL   N+L+ ++   KI DFGLSR        
Sbjct: 139 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYV 196
Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
           KKT    P  WMA E +         Y    DVW+ G+   E+   G  P+  M      
Sbjct: 197 KKTMGRLPVRWMAIESL-----NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM----TC 247
Query: 119 FQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            ++    P G  L +  N      D + +C  + P  RP  +++L
Sbjct: 248 AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 292

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R    +F  
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
           +   + +  + APE++        GY   +D+W++G    E+
Sbjct: 183 EPEVV-TRYYRAPEVILGM-----GYKENVDIWSVGCIMGEM 218

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-------ETANTF 58
           I  +++ ++ G+ ++H N ++HRD++ +NVL+T+DG +K+ DFGL+R          N +
Sbjct: 127 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 186
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP 107
             +   L    W  P  +  G ++   Y   ID+W  G    E+    P
Sbjct: 187 XNRVVTL----WYRPPELLLGERD---YGPPIDLWGAGCIMAEMWTRSP 228

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET---ANTFDKKKTFLGSPSWMA 72
           G+ FLHENH IHRD++ +N+LL +    KI DFGL+R +   A T    +  +G+ ++MA
Sbjct: 145 GINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXR-IVGTTAYMA 203
Query: 73  PEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
           PE +R    E+     + D+++ G+  +E+  G P  ++
Sbjct: 204 PEALR---GEITP---KSDIYSFGVVLLEIITGLPAVDE 236

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 9/164 (5%)
Query: 11  KEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSP 68
           K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +         K + +G+ 
Sbjct: 134 KNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDXXXVVKDSQVGTV 192
Query: 69  SWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
           ++M PE +      R   K       + DVW+LG     +  GK PF+ +    +    +
Sbjct: 193 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAI 252
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +P   +       +   D +  CL+++P+ R  + ELL HP++
Sbjct: 253 IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV 296

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-------ETANTF 58
           I  +++ ++ G+ ++H N ++HRD++ +NVL+T+DG +K+ DFGL+R          N +
Sbjct: 127 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 186
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP 107
             +   L    W  P  +  G ++   Y   ID+W  G    E+    P
Sbjct: 187 XNRVVTL----WYRPPELLLGERD---YGPPIDLWGAGCIMAEMWTRSP 228

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 11/170 (6%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVK--IVDFGLSRETA---NTFDK 60
           +L++  +G+  LH  +++HRDL+  N+L++     G++K  I DFGL ++ A   ++F +
Sbjct: 123 LLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSR 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRALF 119
           +    G+  W+APE++    KE   Y   +D+++ G +    + +G  PF      +A  
Sbjct: 183 RSGVPGTEGWIAPEMLSEDCKENPTYT--VDIFSAGCVFYYVISEGSHPFGKSLQRQANI 240
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
            +       L+   +      + I + +  +P+ RP    +L+HPF  SL
Sbjct: 241 LLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSL 290

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT 63
           Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +  D+  +
Sbjct: 105 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD--DEYTS 162
Query: 64  FLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALF 119
             GS     W  PE++         + ++ D+WA G+   E+   GK P+E    +    
Sbjct: 163 SRGSKFPVRWSPPEVLM-----YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE 217
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            I +     LYR    S+     +  C  +  + RP    LL
Sbjct: 218 HIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILL 257

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +    ++I  GM +LH  H IHRDL   NVLL  D  VKI DFGL++      +  +  
Sbjct: 135 QLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVR 194
Query: 65  LGSPS---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
               S   W APE +    KE   Y    DVW+ G+T  EL
Sbjct: 195 EDGDSPVFWYAPECL----KEYKFYYAS-DVWSFGVTLYEL 230

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR------------ 52
           H  +++ ++I  + +LH   ++HRD++ SN+LL  +  VK+ DFGLSR            
Sbjct: 110 HKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNI 169
Query: 53  -----ETANTFDKKKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG 103
                E    FD  +  L     +  + APEI+    K   G    ID+W+LG    E+ 
Sbjct: 170 PLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKG----IDMWSLGCILGEIL 225
Query: 104 DGKPPFEDMHPTRALFQIV 122
            GKP F        L +I+
Sbjct: 226 CGKPIFPGSSTMNQLERII 244

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R    +F  
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 182
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
           +   + +  + APE++        GY   +D+W++G    E+
Sbjct: 183 EPEVV-TRYYRAPEVILGM-----GYKENVDLWSVGCIMGEM 218

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 142 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLP 201
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 202 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 256
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH---PFITSLPENDL 174
           L Q    P P LY          + + +C     E RP  SEL+      F T + E+ +
Sbjct: 257 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYV 305
Query: 175 HLSTVNCQYKD 185
           H++      K+
Sbjct: 306 HVNATYVNVKE 316

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H+N++IHRD++   VLL        VK+  FG++ +   + 
Sbjct: 130 SEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESG 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                 +G+P +MAPE+++      + Y   +DVW  G+    L  G  PF      R  
Sbjct: 190 LVAGGRVGTPHFMAPEVVK-----REPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLF 243
Query: 119 FQIVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS----- 168
             I++    G Y+      S+ S+   D +   L  +P  R  + E L HP++       
Sbjct: 244 EGIIK----GKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYA 299
Query: 169 ----LPENDLHLSTVNCQYK 184
               LPE    L   N + K
Sbjct: 300 YKIHLPETVEQLRKFNARRK 319

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 119 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXXKASKGKLPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 179 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 233
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 234 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 262

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D 
Sbjct: 161 LSTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--DS 218
Query: 61  KKTFLGSP----SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHP 114
                G+      WMAPE I  C       Y  + DVW+ GI   E+   G  P+  +  
Sbjct: 219 NYIVKGNARLPVKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGLNPYPGILV 272
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
               +++V++    + + +   ++    +  C    P HRP   ++
Sbjct: 273 NSKFYKLVKDGYQ-MAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 317

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 32/199 (16%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  +  I  + +  + F H+++ IHRD++  N+L+TK   +K+ DFG +R      D 
Sbjct: 99  VPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDY 158
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE------------------- 101
               + +  + +PE++  G  +   Y   +DVWA+G    E                   
Sbjct: 159 YDDEVATRWYRSPELL-VGDTQ---YGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYL 214
Query: 102 ----LGDGKPPFEDMHPTRALFQIVRNPPPG-----LYRASNWSQHYVDFIAECLEKNPE 152
               LGD  P  + +  T   F  V+ P P        +  N S   +  +  CL  +P 
Sbjct: 215 IRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPT 274
Query: 153 HRPYMSELLEHPFITSLPE 171
            R    +LL HP+  ++ E
Sbjct: 275 ERLTCEQLLHHPYFENIRE 293

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 142 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 201
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 202 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 256
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH---PFITSLPENDL 174
           L Q    P P LY          + + +C     E RP  SEL+      F T + E+ +
Sbjct: 257 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYV 305
Query: 175 HLSTVNCQYKD 185
           H++      K+
Sbjct: 306 HVNATYVNVKE 316

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--F 58
           +++  +  I ++I  GMV+L   H +HRDL   N L+ ++  VKI DFG+SR+  +T  +
Sbjct: 125 LTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYY 184
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRA 117
                 +    WM PE +         +    DVW+LG+   E+   GK P+  +     
Sbjct: 185 RVGGHTMLPIRWMPPESIM-----YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEV 239
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
           +  I +     L R     Q   + +  C ++ P  R
Sbjct: 240 IECITQGRV--LQRPRTCPQEVYELMLGCWQREPHMR 274

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++++ + G+ FLH N ++HRDL+  N+L+T  G VK+ DFGL+R    ++  
Sbjct: 117 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR--IYSYQM 174
Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
             T +    W  APE++         Y   +D+W++G    E+   KP F
Sbjct: 175 ALTPVVVTLWYRAPEVLL-----QSTYATPVDMWSVGCIFAEMFRRKPLF 219

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H+N++IHRD++   VLL        VK+  FG++ +   + 
Sbjct: 128 SEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESG 187
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                 +G+P +MAPE+++      + Y   +DVW  G+    L  G  PF      R  
Sbjct: 188 LVAGGRVGTPHFMAPEVVK-----REPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLF 241
Query: 119 FQIVRNPPPGLYRA-----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS----- 168
             I++    G Y+      S+ S+   D +   L  +P  R  + E L HP++       
Sbjct: 242 EGIIK----GKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYA 297
Query: 169 ----LPENDLHLSTVNCQYK 184
               LPE    L   N + K
Sbjct: 298 YKIHLPETVEQLRKFNARRK 317

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D 
Sbjct: 163 LSSRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--DS 220
Query: 61  KKTFLGSP----SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHP 114
                G+      WMAPE I  C       Y  + DVW+ GI   E+   G  P+  +  
Sbjct: 221 NYIVKGNARLPVKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGLNPYPGILV 274
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
               +++V++    + + +   ++    +  C    P HRP   ++
Sbjct: 275 NSKFYKLVKDGYQ-MAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 319

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 44/192 (22%)
Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET    
Sbjct: 115 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG-- 172
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----- 113
                                    + YD   D+W+LG+    L  G PPF   H     
Sbjct: 173 -------------------------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS 207
Query: 114 ---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI---T 167
               TR        P P     S  S+     I   L+  P  R  ++E + HP+I   T
Sbjct: 208 PGMKTRIRMGQYEFPNP---EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 264
Query: 168 SLPENDLHLSTV 179
            +P+  LH S V
Sbjct: 265 KVPQTPLHTSRV 276

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K  +    W 
Sbjct: 125 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV---KWT 181
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF-----EDMHPTRALFQIVRNP 125
           APE +R        +  + DVW+ GI   E+   G+ P+     +D+ P       +  P
Sbjct: 182 APEALR-----EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAP 236
Query: 126 ---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
              PP +Y          + +  C   +   RP   +L E   +  +  ++LHL
Sbjct: 237 DGCPPAVY----------EVMKNCWHLDAAMRPSFLQLREQ--LEHIKTHELHL 278

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T       
Sbjct: 111 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  + P++    + +
Sbjct: 171 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEK 225
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 226 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFL 65
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR    T D      
Sbjct: 111 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR--LMTGDTXTAHA 168
Query: 66  GSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQI 121
           G+     W APE +       + +  + DVWA G+   E+   G  P+  + P++    +
Sbjct: 169 GAKFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELL 223
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            ++    + R     +   + +  C + NP  RP  +E+
Sbjct: 224 EKD--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K  +    W 
Sbjct: 116 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV---KWT 172
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF-----EDMHPTRALFQIVRNP 125
           APE +R        +  + DVW+ GI   E+   G+ P+     +D+ P       +  P
Sbjct: 173 APEALREA-----AFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAP 227
Query: 126 ---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
              PP +Y          + +  C   +   RP   +L E   +  +  ++LHL
Sbjct: 228 DGCPPAVY----------EVMKNCWHLDAAMRPSFLQLREQ--LEHIKTHELHL 269

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI  G+  LH   +++RDL+  N+LL   G ++I D GL+          K
Sbjct: 285 EARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTIK 343
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
             +G+  +MAPE+++      + Y    D WALG    E+  G+ PF+         ++ 
Sbjct: 344 GRVGTVGYMAPEVVK-----NERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVE 398
Query: 123 R--NPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           R     P  Y +  +S       ++ L K+P  R         E+ EHP    L    L 
Sbjct: 399 RLVKEVPEEY-SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLG 457
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETIS 203
              +   +K  + Q ++ +D+  +E  S
Sbjct: 458 AGMLEPPFKP-DPQAIYCKDVLDIEQFS 484

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D      G+    
Sbjct: 172 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--DSNYIVKGNARLP 229
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y  + DVW+ GI   E+   G  P+  +      +++V++ 
Sbjct: 230 VKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG 283
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              + + +   ++    +  C    P HRP   ++
Sbjct: 284 YQ-MAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 317

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKT 63
           I +EI+ GM +LH   ++H+DL+  NV    +G+V I DFGL       +     DK + 
Sbjct: 135 IAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRI 193
Query: 64  FLGSPSWMAPEIMRCGHKEVD----GYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
             G    +APEI+R    + +     +    DV+ALG    EL   + PF+       ++
Sbjct: 194 QNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIW 253
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTV 179
           Q+     P L +     +   D +  C     E RP  ++L++   +  LP+ +  LS  
Sbjct: 254 QMGTGMKPNLSQIGM-GKEISDILLFCWAFEQEERPTFTKLMD--MLEKLPKRNRRLSHP 310
Query: 180 NCQYKDQEL 188
              +K  EL
Sbjct: 311 GHFWKSAEL 319

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
           E    F   EI  G+  LH   +++RDL+  N+LL   G ++I D GL+          K
Sbjct: 285 EARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTIK 343
Query: 63  TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV 122
             +G+  +MAPE+++      + Y    D WALG    E+  G+ PF+         ++ 
Sbjct: 344 GRVGTVGYMAPEVVK-----NERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVE 398
Query: 123 R--NPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPFITSLPENDLH 175
           R     P  Y +  +S       ++ L K+P  R         E+ EHP    L    L 
Sbjct: 399 RLVKEVPEEY-SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLG 457
Query: 176 LSTVNCQYKDQELQTMHVEDLAALETIS 203
              +   +K  + Q ++ +D+  +E  S
Sbjct: 458 AGMLEPPFKP-DPQAIYCKDVLDIEQFS 484

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWM 71
           ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K  +    W 
Sbjct: 110 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV---KWT 166
Query: 72  APEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPF-----EDMHPTRALFQIVRNP 125
           APE +R        +  + DVW+ GI   E+   G+ P+     +D+ P       +  P
Sbjct: 167 APEALR-----EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAP 221
Query: 126 ---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
              PP +Y          + +  C   +   RP   +L E   +  +  ++LHL
Sbjct: 222 DGCPPAVY----------EVMKNCWHLDAAMRPSFLQLREQ--LEHIKTHELHL 263

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 108 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 167
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 168 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 108 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 167
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 168 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 108 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 167
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 168 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 168
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  G K    Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEIL-LGXKY---YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 110 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 169
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 170 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 108 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 167
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 168 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 141 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 200
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 201 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 255
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 256 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 289

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 110 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 169
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 170 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 108 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 167
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 168 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 108 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 167
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 168 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 218

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 111 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 171 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 110 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 169
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 170 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 172 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 111 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 171 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--KKTFLGSPSWMAP 73
           G+ FLHENH IHRD++ +N+LL +    KI DFGL+R +            +G+ ++MAP
Sbjct: 139 GINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAP 198
Query: 74  EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
           E +R           + D+++ G+  +E+  G P  ++
Sbjct: 199 EALR------GEITPKSDIYSFGVVLLEIITGLPAVDE 230

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 139 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 198
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 199 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 253
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 254 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 287

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D      G+    
Sbjct: 160 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--DSNYIVKGNARLP 217
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y  + DVW+ GI   E+   G  P+  +      +++V++ 
Sbjct: 218 VKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG 271
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              + + +   ++    +  C    P HRP   ++
Sbjct: 272 YQ-MAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 305

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 116 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 175
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 176 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 226

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 116 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 175
Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  G K    Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 176 YRAPEIL-LGXKY---YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 226

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 172 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 499 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 558
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 559 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 613
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 614 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 642

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 111 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 171 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D      G+    
Sbjct: 168 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--DSNYIVKGNARLP 225
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y  + DVW+ GI   E+   G  P+  +      +++V++ 
Sbjct: 226 VKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG 279
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              + + +   ++    +  C    P HRP   ++
Sbjct: 280 YQ-MAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 313

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKK 62
           ++A +L ++  GM +L E + +HRDL   NVLL      KI DFGLS+     +++   +
Sbjct: 111 NVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 170
Query: 63  TFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM 112
           +    P  W APE +         + +R DVW+ G+T  E L  G+ P++ M
Sbjct: 171 SAGKWPLKWYAPECI-----NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 217

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 172 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 111 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 170
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 171 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 221

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 110 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 169
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 170 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 160 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 219
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 220 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 274
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 275 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 313

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 26/124 (20%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           ++E+HI  IL  ++ G  F+HE+ +IHRDL+ +N LL +D  VK+ DFGL+R   +  D 
Sbjct: 126 LTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDT 185
Query: 60  --------------------KKKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGIT 98
                               K+ T      W  APE++       + Y   ID+W+ G  
Sbjct: 186 NIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQ----ENYTKSIDIWSTGCI 241
Query: 99  AIEL 102
             EL
Sbjct: 242 FAEL 245

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 113 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 172
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 173 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 223

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 113 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 172
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 173 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 223

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 146 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 205
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 206 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 260
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 261 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 294

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 160 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 219
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 220 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 274
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 275 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 313

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 172 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 141 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 200
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 201 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 255
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 256 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 289

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 110 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 169
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 170 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 220

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S Q +     ++  GM +L +   IHR+L   N+L+ ++   KI DFGLSR        
Sbjct: 136 LSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSR--GQEVYV 193
Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
           KKT    P  WMA E +         Y    DVW+ G+   E+   G  P+  M      
Sbjct: 194 KKTMGRLPVRWMAIESL-----NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM----TC 244
Query: 119 FQIVRNPPPG--LYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            ++    P G  L +  N      D + +C  + P  RP  +++L
Sbjct: 245 AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 289

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSP-- 68
           ++  GM FL     +HRDL   N +L +   VK+ DFGL+R+  +  FD      G+   
Sbjct: 200 QVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 259
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP---------TRA 117
             WMA E +     +   +  + DVW+ G+   EL   G PP+ D++           R 
Sbjct: 260 VKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR 314
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 315 LLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 348

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 172 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 112 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLW 171
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 172 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 222

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 172 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 231
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 232 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 286
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 287 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 325

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKK 61
           E+   F   E++  +  +H   +IHRD++  N+LL K G +K+ DFG   +   T     
Sbjct: 173 EKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVHC 232
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
            T +G+P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 233 DTAVGTPDYISPEVLK--SQGGDGYYGRECDWWSVGVFLFEMLVGDTPF 279

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE---TANTFDKKKTFLG 66
           L +++ G+ F H  +V+HRDL+  N+L+ ++GE+K+ DFGL+R        +  +   L 
Sbjct: 107 LFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTL- 165
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDM-HPTRALFQIV 122
              W  P  +  G K    Y   ID+W+ G    EL +   P     D+    + +F+++
Sbjct: 166 ---WYRPPDVLFGAKL---YSTSIDMWSAGCIFAELANAARPLFPGNDVDDQLKRIFRLL 219
Query: 123 RNP---------------PPGLYRASNWSQHYV--------DFIAECLEKNPEHRPYMSE 159
             P               P  +Y A+    + V        D +   L+ NP  R    E
Sbjct: 220 GTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEE 279
Query: 160 LLEHPFIT 167
            L+HP+ +
Sbjct: 280 ALQHPYFS 287

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 121 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 180
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 181 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 235
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 236 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 264

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 119 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 179 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 233
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 234 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 262

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 147 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 206
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 207 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 261
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 262 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 290

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 160 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 219
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 220 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 274
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 275 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 313

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 162 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 221
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 222 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 276
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 277 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 315

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 116 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 175
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 176 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 230
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 231 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 259

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 124 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 183
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 184 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 238
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 239 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 267

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 122 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 181
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 182 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 236
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 237 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 265

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P  W
Sbjct: 119 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 179 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 233
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 234 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 262

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 152 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 211
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 212 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 266
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 267 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 305

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 145 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 204
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 205 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 259
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 260 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 298

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  D      G+    
Sbjct: 166 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMN--DSNYIVKGNARLP 223
Query: 69  -SWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
             WMAPE I  C       Y  + DVW+ GI   E+   G  P+  +      +++V++ 
Sbjct: 224 VKWMAPESIFDC------VYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG 277
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              + + +   ++    +  C    P HRP   ++
Sbjct: 278 YQ-MAQPAFAPKNIYSIMQACWALEPTHRPTFQQI 311

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 146 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 205
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 206 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 260
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 261 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 299

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT-FLGS 67
           + ++I  G+ ++H   +IHRDL+ SN+ L    +VKI DFGL     N  D K+T   G+
Sbjct: 141 LFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKN--DGKRTRSKGT 198
Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---N 124
             +M+PE +         Y   +D++ALG+   EL         +H     F+  +   +
Sbjct: 199 LRYMSPEQISS-----QDYGKEVDLYALGLILAEL---------LHVCDTAFETSKFFTD 244
Query: 125 PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
              G+  +  + +     + + L K PE RP  SE+L
Sbjct: 245 LRDGII-SDIFDKKEKTLLQKLLSKKPEDRPNTSEIL 280

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKKT 63
           +    ++I  GM +LH  H IHR+L   NVLL  D  VKI DFGL++     + + + + 
Sbjct: 119 LLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRE 178
Query: 64  FLGSPS-WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              SP  W APE +    KE   Y    DVW+ G+T  EL
Sbjct: 179 DGDSPVFWYAPECL----KEYKFYYAS-DVWSFGVTLYEL 213

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 145 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 204
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 205 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 259
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 260 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 298

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS 69
           L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R            + +  
Sbjct: 109 LFQLLQGLSFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 168
Query: 70  WMAPEIMR-CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN 124
           + APEI+  C +     Y   +D+W+LG    E+   +  F        LF+I R 
Sbjct: 169 YRAPEILLGCKY-----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT 219

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 146 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 205
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 206 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 260
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 261 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 299

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++++ + G+ FLH N ++HRDL+  N+L+T  G VK+ DFGL+R  +     
Sbjct: 109 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMAL 168
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
               + +  + APE++         Y   +D+W++G    E+   KP F
Sbjct: 169 APVVV-TLWYRAPEVLL-----QSTYATPVDMWSVGCIFAEMFRRKPLF 211

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLG 66
           +L+ I  GM +L + + +HRDL   N+L+  +   K+ DFGLSR  E   +     + LG
Sbjct: 140 MLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALG 199
Query: 67  SP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM---HPTRALF 119
                 W APE +     +   + +  DVW+ GI   E +  G+ P+ DM       A+ 
Sbjct: 200 GKIPIRWTAPEAI-----QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIE 254
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           Q  R PPP +   S   Q  +D    C +K+  HRP   +++
Sbjct: 255 QDYRLPPP-MDCPSALHQLMLD----CWQKDRNHRPKFGQIV 291

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 10  LKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE---TANTFDKKKTFLG 66
           L +++ G+ F H  +V+HRDL+  N+L+ ++GE+K+ +FGL+R        +  +   L 
Sbjct: 107 LFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTL- 165
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKP--PFEDM-HPTRALFQIV 122
              W  P  +  G K    Y   ID+W+ G    EL + G+P  P  D+    + +F+++
Sbjct: 166 ---WYRPPDVLFGAKL---YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLL 219
Query: 123 RNP---------------PPGLYRASNWSQHYV--------DFIAECLEKNPEHRPYMSE 159
             P               P  +Y A+    + V        D +   L+ NP  R    E
Sbjct: 220 GTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEE 279
Query: 160 LLEHPFIT 167
            L+HP+ +
Sbjct: 280 ALQHPYFS 287

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKK 62
            +    ++I  GM +LH  H IHR L   NVLL  D  VKI DFGL++     + + + +
Sbjct: 113 QLLLFAQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVR 172
Query: 63  TFLGSPS-WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
               SP  W APE +    KE   Y    DVW+ G+T  EL
Sbjct: 173 EDGDSPVFWYAPECL----KECKFYYAS-DVWSFGVTLYEL 208

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A  + K   
Sbjct: 186 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGC 245
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 246 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 300
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 301 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 339

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A  + K   
Sbjct: 163 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGC 222
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 223 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 277
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 278 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 316

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+   A+ + K   
Sbjct: 137 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGC 196
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 197 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 251
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 252 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 290

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKK 62
            +    ++I  GM +LH  H IHR L   NVLL  D  VKI DFGL++     + + + +
Sbjct: 112 QLLLFAQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVR 171
Query: 63  TFLGSPS-WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
               SP  W APE +    KE   Y    DVW+ G+T  EL
Sbjct: 172 EDGDSPVFWYAPECL----KECKFYYAS-DVWSFGVTLYEL 207

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++++ + G+ FLH N ++HRDL+  N+L+T  G VK+ DFGL+R  +     
Sbjct: 109 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMAL 168
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
               + +  + APE++         Y   +D+W++G    E+   KP F
Sbjct: 169 DPVVV-TLWYRAPEVLL-----QSTYATPVDMWSVGCIFAEMFRRKPLF 211

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKKT 63
           +    ++I  GM +LH  H IHR+L   NVLL  D  VKI DFGL++     + + + + 
Sbjct: 119 LLLFAQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRE 178
Query: 64  FLGSPS-WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              SP  W APE +    KE   Y    DVW+ G+T  EL
Sbjct: 179 DGDSPVFWYAPECL----KEYKFYYAS-DVWSFGVTLYEL 213

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKK 61
           E+   F   E++  +  +H    IHRD++  N+LL K G +K+ DFG   +       + 
Sbjct: 172 EKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRC 231
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
            T +G+P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 232 DTAVGTPDYISPEVLKS--QGGDGYYGRECDWWSVGVFLYEMLVGDTPF 278

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKK 61
           E+   F   E++  +  +H    IHRD++  N+LL K G +K+ DFG   +       + 
Sbjct: 167 EKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRC 226
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
            T +G+P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 227 DTAVGTPDYISPEVLKS--QGGDGYYGRECDWWSVGVFLYEMLVGDTPF 273

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---KIVDFGLSRETANT 57
           + E  I  +L +I + + +LHEN +IHRDL+  N++L    +    KI+D G ++E  + 
Sbjct: 119 LKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-DQ 177
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +    F+G+  ++APE++     E   Y   +D W+ G  A E   G  PF
Sbjct: 178 GELCTEFVGTLQYLAPELL-----EQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV---KIVDFGLSRETANT 57
           + E  I  +L +I + + +LHEN +IHRDL+  N++L    +    KI+D G ++E  + 
Sbjct: 118 LKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-DQ 176
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
            +    F+G+  ++APE++     E   Y   +D W+ G  A E   G  PF
Sbjct: 177 GELCTEFVGTLQYLAPELL-----EQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKK 61
           E+   F   E++  +  +H    IHRD++  N+LL K G +K+ DFG   +       + 
Sbjct: 172 EKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRC 231
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF 109
            T +G+P +++PE+++   +  DGY  R  D W++G+   E+  G  PF
Sbjct: 232 DTAVGTPDYISPEVLK--SQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 278

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++    VK+ DFGLSR   ++   K +    P  W
Sbjct: 499 QLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 558
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 559 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 613
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 614 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 642

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL--LTKDGE--VKIVDFGLSRETAN 56
           + E     +L++++ GM  L EN ++HR+++  N++  + +DG+   K+ DFG +RE  +
Sbjct: 109 LPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED 168
Query: 57  TFDKKKTFLGSPSWMAPE-----IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
             ++  +  G+  ++ P+     ++R  H++   Y   +D+W++G+T      G  PF  
Sbjct: 169 D-EQFVSLYGTEEYLHPDMYERAVLRKDHQK--KYGATVDLWSIGVTFYHAATGSLPFRP 225
Query: 112 MHPTR----ALFQIVRNPPPG 128
               R     +++I+   P G
Sbjct: 226 FEGPRRNKEVMYKIITGKPSG 246

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFD 59
           E   A I+K++++ + + H+ +V HRDL+  N L    + D  +K++DFGL    A  F 
Sbjct: 122 ESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGL----AARFK 177
Query: 60  KKK---TFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKPPFEDMHPT 115
             K   T +G+P +++P+++       +G Y    D W+ G+    L  G PPF      
Sbjct: 178 PGKMMRTKVGTPYYVSPQVL-------EGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDX 230
Query: 116 RALFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPF----ITS 168
             + +I        +   +W   S      I   L K+P+ R    + LEH +    ++S
Sbjct: 231 EVMLKIREG--TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSS 288
Query: 169 LPENDL 174
            P N L
Sbjct: 289 SPRNLL 294

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFD 59
           E   A I+K++++ + + H+ +V HRDL+  N L    + D  +K++DFGL    A  F 
Sbjct: 105 ESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGL----AARFK 160
Query: 60  KKK---TFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKPPFEDMHPT 115
             K   T +G+P +++P+++       +G Y    D W+ G+    L  G PPF      
Sbjct: 161 PGKMMRTKVGTPYYVSPQVL-------EGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDX 213
Query: 116 RALFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPF----ITS 168
             + +I        +   +W   S      I   L K+P+ R    + LEH +    ++S
Sbjct: 214 EVMLKIREG--TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSS 271
Query: 169 LPENDL 174
            P N L
Sbjct: 272 SPRNLL 277

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLG 66
           I  +I +GMV+L   H +HRDL   N L+  +  VKI DFG+SR+  +T  +      + 
Sbjct: 138 IASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTML 197
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNP 125
              WM PE +         +    DVW+ G+   E+   GK P+  +  T  +  I +  
Sbjct: 198 PIRWMPPESIM-----YRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGR 252
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              L R     +   D +  C ++ P+ R  + E+
Sbjct: 253 V--LERPRVCPKEVYDVMLGCWQREPQQRLNIKEI 285

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 115 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 174
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 175 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 229
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 230 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           ++ T + +L     +HRD+   NVL++    VK+ DFGLSR   ++   K +    P  W
Sbjct: 119 QLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQIVR------ 123
           MAPE +         + +  DVW  G+   E L  G  PF+ +     + +I        
Sbjct: 179 MAPESI-----NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPM 233
Query: 124 --NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
             N PP LY            + +C   +P  RP  +EL
Sbjct: 234 PPNCPPTLY----------SLMTKCWAYDPSRRPRFTEL 262

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 114 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 173
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 174 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 228
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 229 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 126 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 185
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 186 KFPIKWTAPESLA-----YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 240
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 241 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 275

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 173 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 227
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 228 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++++ + G+ FLH N ++HRDL+  N+L+T  G VK+ DFGL+R  +     
Sbjct: 109 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMAL 168
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
               + +  + APE++         Y   +D+W++G    E+   KP F
Sbjct: 169 FPVVV-TLWYRAPEVLL-----QSTYATPVDMWSVGCIFAEMFRRKPLF 211

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 115 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 175 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 229
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 230 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 173 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 227
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 228 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 115 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 175 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 229
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 230 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 178 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 232
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 233 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 173 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 227
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 228 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKKTFLG 66
           ++ +I  GM +L  +HV+H+DL   NVL+     VKI D GL RE   A+ +      L 
Sbjct: 150 LVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLL 209
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN- 124
              WMAPE +  G   +D      D+W+ G+   E+   G  P+   +  + + +++RN 
Sbjct: 210 PIRWMAPEAIMYGKFSIDS-----DIWSYGVVLWEVFSYGLQPYCG-YSNQDVVEMIRNR 263
Query: 125 ---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              P P    A  ++      + EC  + P  RP   ++
Sbjct: 264 QVLPCPDDCPAWVYA-----LMIECWNEFPSRRPRFKDI 297

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 178 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 232
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 233 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 173 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 227
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 228 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 178 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 232
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 233 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 117 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 177 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 231
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 232 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 266

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTFDKKKTFLG 66
           ++ +I  GM +L  +HV+H+DL   NVL+     VKI D GL RE   A+ +      L 
Sbjct: 133 LVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLL 192
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN- 124
              WMAPE +  G   +D      D+W+ G+   E+   G  P+   +  + + +++RN 
Sbjct: 193 PIRWMAPEAIMYGKFSIDS-----DIWSYGVVLWEVFSYGLQPYCG-YSNQDVVEMIRNR 246
Query: 125 ---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
              P P    A  ++      + EC  + P  RP   ++
Sbjct: 247 QVLPCPDDCPAWVYA-----LMIECWNEFPSRRPRFKDI 280

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 178 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 232
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 233 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTFDKKK 62
           ++A +L ++  GM +L E + +HR+L   NVLL      KI DFGLS+     +++   +
Sbjct: 437 NVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 496
Query: 63  TFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM 112
           +    P  W APE +         + +R DVW+ G+T  E L  G+ P++ M
Sbjct: 497 SAGKWPLKWYAPECI-----NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 543

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 173 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 227
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 228 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 113 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 173 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 227
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 228 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 104 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 163
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 164 YKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 218
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 219 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 255

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDKK 61
           E+H    + +++ G+ ++H  +V+HRDL+ +N+ + T+D  +KI DFGL+R     +  K
Sbjct: 119 EEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHK 178
Query: 62  KTF---LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                 L +  + +P ++       + Y   ID+WA G    E+  GK  F   H    +
Sbjct: 179 GHLSEGLVTKWYRSPRLLLSP----NNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQM 234
Query: 119 FQIVRNPP---------------------------PGLYRASNWSQHYVDFIAECLEKNP 151
             I+ + P                           P        S+  VDF+ + L  +P
Sbjct: 235 QLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSP 294
Query: 152 EHRPYMSELLEHPFIT 167
             R    E L HP+++
Sbjct: 295 MDRLTAEEALSHPYMS 310

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 102 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 161
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 162 YKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 216
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 217 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 253

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLGSPSWMAP 73
           G+ FLHENH IHRD++ +N+LL +    KI DFGL+R  E           +G+ ++ AP
Sbjct: 136 GINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAP 195
Query: 74  EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
           E +R    E+     + D+++ G+  +E+  G P  ++
Sbjct: 196 EALR---GEI---TPKSDIYSFGVVLLEIITGLPAVDE 227

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 108 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 167
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 168 YKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 222
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 223 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 259

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 141 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 197
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 198 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 252
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 253 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 289

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 141 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 197
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 198 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 252
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 253 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 289

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 114 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 173
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 174 YKAQTHGKWPVKWYAPECIN-----YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 228
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 229 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 265

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKTFLG 66
           +I  GM++L E  ++HRDL   NVL+     VKI DFGL+R     E     D  K  + 
Sbjct: 125 QIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPI- 183
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WMA   + C H     + ++ DVW+ G+T  EL   G  P++ + PTR +  ++   
Sbjct: 184 --KWMA---LECIHYR--KFTHQSDVWSYGVTIWELMTFGGKPYDGI-PTREIPDLLEKG 235
Query: 123 -RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            R P P +     +       + +C   + + RP   EL
Sbjct: 236 ERLPQPPICTIDVYM-----VMVKCWMIDADSRPKFKEL 269

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 140 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 196
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 197 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 251
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 252 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 288

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 136 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 192
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 193 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 247
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 248 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 284

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 122 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 181
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 182 YKAQTHGKWPVKWYAPECIN-----YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 236
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 237 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 273

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS---RETANT 57
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS   R   N 
Sbjct: 108 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENX 167
Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
           +  +        W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 168 YKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 222
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 223 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 259

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRET--ANTFDKKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++++   A+ + K   
Sbjct: 146 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMAQDIYRASYYRKGGC 205
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
            +    WM PE    G      + ++ D W+ G+   E+   G  P+        L  + 
Sbjct: 206 AMLPVKWMPPEAFMEGI-----FTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT 260
Query: 123 ---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              R  PP      N        + +C +  PE RP  + +LE 
Sbjct: 261 SGGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILER 299

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 124 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 183
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 184 YKAQTHGKWPVKWYAPECIN-----YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 238
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 239 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 275

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 124 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 183
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 184 YKAQTHGKWPVKWYAPECIN-----YYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 238
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 239 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 275

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 133 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 189
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 190 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 244
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 245 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 281

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 138 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 194
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 195 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 249
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 250 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 286

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 160 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 216
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 217 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 271
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 272 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 308

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 159 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 215
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 216 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 270
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 271 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 307

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 139 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEYYSVHNKTGA 195
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 196 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 250
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 251 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 287

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 36/168 (21%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK------KTFL 65
           ++  GM +L     +HRDL   N +L +   VK+ DFGL+R+    +DK+      KT  
Sbjct: 140 QVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD---MYDKEXXSVHNKTGA 196
Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHP--------- 114
             P  WMA E +     +   +  + DVW+ G+   EL   G PP+ D++          
Sbjct: 197 KLPVKWMALESL-----QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 251
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R L Q    P P LY          + + +C     E RP  SEL+ 
Sbjct: 252 GRRLLQPEYCPDP-LY----------EVMLKCWHPKAEMRPSFSELVS 288

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL--LTKDGE--VKIVDFGLSRETAN 56
           + E     +L++++ GM  L EN ++HR+++  N++  + +DG+   K+ DFG +RE  +
Sbjct: 109 LPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED 168
Query: 57  TFDKKKTFLGSPSWMAPE-----IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
             ++     G+  ++ P+     ++R  H++   Y   +D+W++G+T      G  PF  
Sbjct: 169 D-EQFVXLYGTEEYLHPDMYERAVLRKDHQK--KYGATVDLWSIGVTFYHAATGSLPFRP 225
Query: 112 MHPTR----ALFQIVRNPPPG 128
               R     +++I+   P G
Sbjct: 226 FEGPRRNKEVMYKIITGKPSG 246

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKTFLG 66
           +I  GM++L E  ++HRDL   NVL+     VKI DFGL+R     E     D  K  + 
Sbjct: 148 QIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPI- 206
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WMA   + C H     + ++ DVW+ G+T  EL   G  P++ + PTR +  ++   
Sbjct: 207 --KWMA---LECIHYR--KFTHQSDVWSYGVTIWELMTFGGKPYDGI-PTREIPDLLEKG 258
Query: 123 -RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
            R P P +     +       + +C   + + RP   EL
Sbjct: 259 ERLPQPPICTIDVYM-----VMVKCWMIDADSRPKFKEL 292

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLG 66
           +L+ I  GM +L + + +HR L   N+L+  +   K+ DFGLSR  E   +     + LG
Sbjct: 114 MLRGIAAGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALG 173
Query: 67  SP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM---HPTRALF 119
                 W APE +     +   + +  DVW+ GI   E +  G+ P+ DM       A+ 
Sbjct: 174 GKIPIRWTAPEAI-----QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIE 228
Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           Q  R PPP +   S   Q  +D    C +K+  HRP   +++
Sbjct: 229 QDYRLPPP-MDCPSALHQLMLD----CWQKDRNHRPKFGQIV 265

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSPSW 70
           +I+ G+   H+  ++HRD++  N+L+  +  +KI DFG+++  + T   +    LG+  +
Sbjct: 119 QILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQY 178
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY 130
            +PE       + +  D   D++++GI   E+  G+PPF          + +++  P + 
Sbjct: 179 FSPE-----QAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVT 233
Query: 131 R--ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
                +  Q   + I    EK+  +R    + ++    + L EN
Sbjct: 234 TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN 277

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHR+L   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 320 LLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 379
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 380 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 434
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 435 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 469

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHR+L   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 359 LLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 418
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 419 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 473
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 474 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 508

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           + ++I  G+ ++H   +I+RDL+ SN+ L    +VKI DFGL     N   K+    G+ 
Sbjct: 127 LFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND-GKRXRSKGTL 185
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NP 125
            +M+PE +         Y   +D++ALG+   EL         +H     F+  +   + 
Sbjct: 186 RYMSPEQISS-----QDYGKEVDLYALGLILAEL---------LHVCDTAFETSKFFTDL 231
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
             G+  +  + +     + + L K PE RP  SE+L
Sbjct: 232 RDGII-SDIFDKKEKTLLQKLLSKKPEDRPNTSEIL 266

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP--- 68
           ++  GM FL     +HRDL   NVL+T    VKI DFGL+R+  +  D      G+    
Sbjct: 180 QVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMS--DSNYVVRGNARLP 237
Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN 124
             WMAPE +  G      Y  + DVW+ GI   E+   G  P+  +      +++++N
Sbjct: 238 VKWMAPESLFEGI-----YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQN 290

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T       
Sbjct: 118 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 177
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 178 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 232
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 233 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 467 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 526
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 527 YKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 581
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 582 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 618

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T       
Sbjct: 114 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 173
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
                W APE +       + +  + DVWA G+   E+   G  P+  +  ++    + +
Sbjct: 174 KFPIKWTAPESL-----AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 228
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           +    + R     +   + +  C + NP  RP  +E+
Sbjct: 229 D--YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+       +
Sbjct: 466 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 525
Query: 59  DKKKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
            K +T    P  W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 526 YKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 580
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
               + +    G    +   +   D +  C   + E+RP
Sbjct: 581 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRP 617

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 15  TGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--PSWMA 72
            GM +L     IHRDL   N L+T+   +KI DFG+SRE A+        L      W A
Sbjct: 224 AGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTA 283
Query: 73  PEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM--HPTRALFQI-VRNPPPG 128
           PE +  G      Y +  DVW+ GI   E    G  P+ ++    TR   +   R P P 
Sbjct: 284 PEALNYGR-----YSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPE 338
Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           L             + +C    P  RP  S +
Sbjct: 339 LC-----PDAVFRLMEQCWAYEPGQRPSFSTI 365

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Query: 4   QHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET-ANTFDKKK 62
           Q +   + +I  GM +L   + IHRDL   N +L +D  V + DFGLSR+  +  + ++ 
Sbjct: 137 QTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQG 196
Query: 63  TFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQ 120
                P  W+A E +       + Y    DVWA G+T  E +  G+ P+  +        
Sbjct: 197 CASKLPVKWLALESL-----ADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNY 251
Query: 121 IV-----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
           ++     + PP  +       +   D + +C   +P+ RP  + L
Sbjct: 252 LIGGNRLKQPPECM-------EEVYDLMYQCWSADPKQRPSFTCL 289

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 15  TGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN-TFDKKKTFLGSP-SWMA 72
            GM +L     IHRDL   N L+T+   +KI DFG+SRE A+  +         P  W A
Sbjct: 224 AGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTA 283
Query: 73  PEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDM--HPTRALFQI-VRNPPPG 128
           PE +  G      Y +  DVW+ GI   E    G  P+ ++    TR   +   R P P 
Sbjct: 284 PEALNYGR-----YSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPE 338
Query: 129 LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           L             + +C    P  RP  S + +
Sbjct: 339 LC-----PDAVFRLMEQCWAYEPGQRPSFSTIYQ 367

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKK 62
            +  +L+ I +GM +L E   +HRDL   N+L+  +   K+ DFGLSR  E  ++   + 
Sbjct: 119 QLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTET 178
Query: 63  TFLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PT 115
           + LG      W APE +         + +  D W+ GI   E +  G+ P+ DM      
Sbjct: 179 SSLGGKIPIRWTAPEAI-----AFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVI 233
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            A+ Q  R PPP      +        + +C +K+   RP   +++
Sbjct: 234 NAIEQDYRLPPP-----PDCPTSLHQLMLDCWQKDRNARPRFPQVV 274

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN----TFDKK 61
           I+F L ++  GM +L E   +HRDL   N +L +   VK+ DFGL+R+  +    +  + 
Sbjct: 127 ISFGL-QVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQH 185
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHP---TRA 117
           +       W A E +     +   +  + DVW+ G+   E L  G PP+  + P   T  
Sbjct: 186 RHARLPVKWTALESL-----QTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHF 240
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           L Q  R P P     S +       + +C E +P  RP    L+
Sbjct: 241 LAQGRRLPQPEYCPDSLYQ-----VMQQCWEADPAVRPTFRVLV 279

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 8   FILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLS-RETANTFDKKKTFLG 66
           F L EI+  +  +H    +HRD++  N+LL + G +++ DFG   +  A+   +    +G
Sbjct: 166 FYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVG 225
Query: 67  SPSWMAPEIMRC--GHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
           +P +++PEI++   G      Y    D WALG+ A E+  G+ PF
Sbjct: 226 TPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF 270

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 28/182 (15%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-------------EVKIVDFGLSRETA 55
           +L++I +G+  LH   +IHRDL+  N+L++                 + I DFGL ++  
Sbjct: 120 LLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLD 179
Query: 56  NTFDKKKTFLGSPS----WMAPEIMRCGH--KEVDGYDNRIDVWALG-ITAIELGDGKPP 108
           +     +T L +PS    W APE++   +  +        ID++++G +    L  GK P
Sbjct: 180 SGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP 239
Query: 109 FEDMHP-----TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           F D +       R +F +  +    L+  S  ++   D I++ ++ +P  RP   ++L H
Sbjct: 240 FGDKYSRESNIIRGIFSL--DEMKCLHDRSLIAEA-TDLISQMIDHDPLKRPTAMKVLRH 296
Query: 164 PF 165
           P 
Sbjct: 297 PL 298

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T 
Sbjct: 119 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A
Sbjct: 179 RGGKIPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA 233
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 234 VDEGYRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 272

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T 
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A
Sbjct: 208 RGGKIPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA 262
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 263 VDEGYRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T 
Sbjct: 119 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A
Sbjct: 179 RGGKIPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA 233
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 234 VDEGYRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 272

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 123 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 182
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 183 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 233
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 234 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 269

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 123 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 182
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 183 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 233
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 234 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 269

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T 
Sbjct: 136 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 195
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A
Sbjct: 196 RGGKIPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA 250
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 251 VDEGYRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 289

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 129 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPF 188
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 189 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 239
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 240 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 275

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 150 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 209
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 210 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 264
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 265 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 299

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T 
Sbjct: 148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A
Sbjct: 208 RGGKIPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA 262
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 263 VDEGYRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 129 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 188
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 189 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 239
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 240 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 275

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 119 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 178
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 179 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 229
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 230 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 265

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 119 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPF 178
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 179 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 229
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 230 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 265

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-VKIVDFGLS-----RET 54
           + E    + L + + G+ +LH   ++H D++  NVLL+ DG    + DFG +        
Sbjct: 182 LPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQPDGL 241
Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
             +        G+ + MAPE++          D ++DVW+     + + +G  P+     
Sbjct: 242 GKSLLTGDYIPGTETHMAPEVVL-----GRSCDAKVDVWSSCCMMLHMLNGCHPWTQFFR 296
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                +I   PPP      + +      I E L K P HR   +EL
Sbjct: 297 GPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAEL 342

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-------KKKTF 64
           ++  GM +L     IHRDL   N+LL     VKI DFGL R      D       +K  F
Sbjct: 119 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 178
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
               +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I +
Sbjct: 179 ----AWCAPESLK-----TRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDK 229
Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                L R  +  Q   + + +C    PE RP    L
Sbjct: 230 E-GERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVAL 265

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 122 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 176
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 177 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 225
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 226 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 280

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 123 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 177
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 178 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 226
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 227 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 281

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 165 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 219
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 220 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 268
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 269 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 323

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTFDKKKTFLG 66
           I +++  GM +L E   +HRDL   N L+ ++  VKI DFGLSR   +A+ +        
Sbjct: 179 IARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAI 238
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              WM PE +       + Y    DVWA G+   E+
Sbjct: 239 PIRWMPPESIF-----YNRYTTESDVWAYGVVLWEI 269

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-------------EVKIVDFGLSRETA 55
           +L++I +G+  LH   +IHRDL+  N+L++                 + I DFGL ++  
Sbjct: 138 LLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLD 197
Query: 56  NTFDKKKTFLGSPS----WMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFE 110
           +     +  L +PS    W APE++    K        ID++++G +    L  GK PF 
Sbjct: 198 SGQXXFRXNLNNPSGTSGWRAPELLEESTKR--RLTRSIDIFSMGCVFYYILSKGKHPFG 255
Query: 111 DMHP-----TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           D +       R +F +  +    L+  S  ++   D I++ ++ +P  RP   ++L HP 
Sbjct: 256 DKYSRESNIIRGIFSL--DEMKCLHDRSLIAEA-TDLISQMIDHDPLKRPTAMKVLRHPL 312

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 122 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 176
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 177 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 225
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 226 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 280

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKK 62
            +  +L+ I +GM +L E   +HRDL   N+L+  +   K+ DFGLSR  E  ++     
Sbjct: 117 QLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYT 176
Query: 63  TFLGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PT 115
           + LG      W APE +         + +  D W+ GI   E +  G+ P+ DM      
Sbjct: 177 SSLGGKIPIRWTAPEAI-----AFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVI 231
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            A+ Q  R PPP      +        + +C +K+   RP   +++
Sbjct: 232 NAIEQDYRLPPP-----PDCPTSLHQLMLDCWQKDRNARPRFPQVV 272

>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 165 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 219
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 220 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 268
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 269 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 323

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-------------EVKIVDFGLSRETA 55
           +L++I +G+  LH   +IHRDL+  N+L++                 + I DFGL ++  
Sbjct: 138 LLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLD 197
Query: 56  NTFDKKKTFLGSPS----WMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFE 110
           +     +  L +PS    W APE++    K        ID++++G +    L  GK PF 
Sbjct: 198 SGQXXFRXNLNNPSGTSGWRAPELLEESTKR--RLTRSIDIFSMGCVFYYILSKGKHPFG 255
Query: 111 DMHP-----TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF 165
           D +       R +F +  +    L+  S  ++   D I++ ++ +P  RP   ++L HP 
Sbjct: 256 DKYSRESNIIRGIFSL--DEMKCLHDRSLIAEA-TDLISQMIDHDPLKRPTAMKVLRHPL 312

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 123 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 177
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 178 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 226
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 227 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 281

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 123 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 177
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 178 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 226
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 227 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 281

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFDKKKTF 64
           + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR  T +T+      
Sbjct: 132 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGA 191
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFE--DMHPTRALFQI 121
                W APE +       + +  + DVWA G+   E+   G  P+   D+     L + 
Sbjct: 192 KFPIKWTAPESL-----AYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYDLLEK 246
Query: 122 ---VRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE 159
              +  P   PP +Y          + +  C + +P  RP  +E
Sbjct: 247 GYRMEQPEGCPPKVY----------ELMRACWKWSPADRPSFAE 280

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 150 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 204
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 205 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 253
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 254 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 308

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 137 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 191
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 192 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 240
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 241 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 295

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 138 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 192
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 193 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 241
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 242 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 296

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFG+SR   +  +   T 
Sbjct: 132 QLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 191
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W APE +   +++   + +  DVW+ GI   E +  G+ P+ DM      +A
Sbjct: 192 RGGKIPIRWTAPEAI--AYRK---FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKA 246
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP      +        + +C +K    RP   +++
Sbjct: 247 IEEGYRLPPP-----MDCPIALHQLMLDCWQKERSDRPKFGQIV 285

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVL--LTKDGEVKIVDFGLSRETANTF 58
           ++E+ I   + ++   + FLH +++ H D+R  N++    +   +KI++FG +R+     
Sbjct: 99  LNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG- 157
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           D  +    +P + APE+    H+  D      D+W+LG     L  G  PF  +  T   
Sbjct: 158 DNFRLLFTAPEYYAPEV----HQH-DVVSTATDMWSLGTLVYVLLSGINPF--LAETNQ- 209
Query: 119 FQIVRNPPPGLYR-----ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            QI+ N     Y          S   +DF+   L K  + R   SE L+HP++
Sbjct: 210 -QIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWL 261

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-VKIVDFGLSRETANTFD 59
           + E    + L + + G+ +LH   ++H D++  NVLL+ DG    + DFG +        
Sbjct: 163 LPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQPDGL 222
Query: 60  KKKTFL-----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
            K         G+ + MAPE++          D ++DVW+     + + +G  P+     
Sbjct: 223 GKDLLTGDYIPGTETHMAPEVVL-----GRSCDAKVDVWSSCCMMLHMLNGCHPWTQFFR 277
Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL 160
                +I   PPP      + +      I E L K P HR   +EL
Sbjct: 278 GPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAEL 323

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 30/179 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 157 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 214
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R  
Sbjct: 215 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 259
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
                R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 260 VFFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 315

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETA 55
           +  Q +     +I  GM +L +  ++HRDL   NVL+     VKI DFGL+R     ET 
Sbjct: 116 LGSQDLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETE 175
Query: 56  NTFDKKKTFLGSPSWMAPE-IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMH 113
              D  K  +    WMA E I+R        + ++ DVW+ G+T  EL   G  P++ + 
Sbjct: 176 YHADGGKVPI---KWMALESILR------RRFTHQSDVWSYGVTVWELMTFGAKPYDGI- 225
Query: 114 PTRALFQIV----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           P R +  ++    R P P +     +       + +C   + E RP   EL+
Sbjct: 226 PAREIPDLLEKGERLPQPPICTIDVYM-----IMVKCWMIDSECRPRFRELV 272

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 121 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 175
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 176 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 224
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHL 176
               R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL
Sbjct: 225 FFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHL 275

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGL+R   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLG 66
           +  ++  GMV+L   H +HRDL   N L+ +   VKI DFG+SR+  +T  +      + 
Sbjct: 163 VASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 222
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WM PE +         +    DVW+ G+   E+   GK P+  +  T A+  I    
Sbjct: 223 PIRWMPPESIL-----YRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGR 277
Query: 123 -----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
                R  PP +Y            +  C ++ P+ R
Sbjct: 278 ELERPRACPPEVY----------AIMRGCWQREPQQR 304

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 30/179 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 165 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 222
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R  
Sbjct: 223 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 267
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
                R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 268 VFFRQRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 323

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 118 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 175
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R  
Sbjct: 176 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 220
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
                R S+  QH + +   CL   P  RP   E+  HP++  +
Sbjct: 221 VFFRQRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDV 261

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFG+SR   +  +   T 
Sbjct: 117 QLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 176
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W APE +   +++   + +  DVW+ GI   E +  G+ P+ DM      +A
Sbjct: 177 RGGKIPIRWTAPEAI--AYRK---FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKA 231
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP      +        + +C +K    RP   +++
Sbjct: 232 IEEGYRLPPP-----MDCPIALHQLMLDCWQKERSDRPKFGQIV 270

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 31/129 (24%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETA 55
           ++E HI  +L  ++ G+ ++H   ++HRDL+ +N L+ +D  VK+ DFGL+R     E  
Sbjct: 153 LTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENG 212
Query: 56  N-------------------TFDKKKTFLG---SPSWMAPEIMRCGHKEVDGYDNRIDVW 93
           N                   T + K+   G   +  + APE++       + Y   IDVW
Sbjct: 213 NSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQ----ENYTEAIDVW 268
Query: 94  ALGITAIEL 102
           ++G    EL
Sbjct: 269 SIGCIFAEL 277

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLG 66
           +  ++  GMV+L   H +HRDL   N L+ +   VKI DFG+SR+  +T  +      + 
Sbjct: 140 VASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 199
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WM PE +         +    DVW+ G+   E+   GK P+  +  T A+  I    
Sbjct: 200 PIRWMPPESIL-----YRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGR 254
Query: 123 -----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
                R  PP +Y            +  C ++ P+ R
Sbjct: 255 ELERPRACPPEVY----------AIMRGCWQREPQQR 281

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLG 66
           +  ++  GMV+L   H +HRDL   N L+ +   VKI DFG+SR+  +T  +      + 
Sbjct: 134 VASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 193
Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV--- 122
              WM PE +         +    DVW+ G+   E+   GK P+  +  T A+  I    
Sbjct: 194 PIRWMPPESIL-----YRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGR 248
Query: 123 -----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
                R  PP +Y            +  C ++ P+ R
Sbjct: 249 ELERPRACPPEVY----------AIMRGCWQREPQQR 275

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFG+SR   +  +   T 
Sbjct: 111 QLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTT 170
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRA 117
            G      W APE +   +++   + +  DVW+ GI   E +  G+ P+ DM      +A
Sbjct: 171 RGGKIPIRWTAPEAI--AYRK---FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKA 225
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R PPP      +        + +C +K    RP   +++
Sbjct: 226 IEEGYRLPPP-----MDCPIALHQLMLDCWQKERSDRPKFGQIV 264

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 30/179 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 145 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 202
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R  
Sbjct: 203 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 247
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
                R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 248 VFFRQRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 303

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 137 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 191
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 192 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 240
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 241 FFRQRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 295

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 138 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 192
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 193 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 241
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 242 FFRQRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 296

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 30/179 (16%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 170 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 227
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R  
Sbjct: 228 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 272
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
                R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 273 VFFRQRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 328

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANTFDKKKTFLGS 67
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T      F G+
Sbjct: 138 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT-----DFDGT 192
Query: 68  PSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP 126
             +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R   
Sbjct: 193 RVYSPPEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQV 241
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLSTVN 180
               R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +++
Sbjct: 242 FFRQRVSXECQHLIRW---CLALRPXDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 296

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 26/164 (15%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 118 QVLEAVRHCHNXGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 175
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP 125
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PFE         +I+R  
Sbjct: 176 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ 220
Query: 126 PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
                R S   QH + +   CL   P  RP   E+  HP++  +
Sbjct: 221 VFFRQRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDV 261

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  +   L++ +  +  LH   ++H D++ +N+ L   G  K+ DFGL  E   T   
Sbjct: 154 LPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL-GTAGA 212
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
            +   G P +MAPE+++        Y    DV++LG+T +E+
Sbjct: 213 GEVQEGDPRYMAPELLQ------GSYGTAADVFSLGLTILEV 248

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGL R   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGK 211
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W +PE +   +++   + +  DVW+ GI   E +  G+ P+ +M      +A+ + 
Sbjct: 212 IPIRWTSPEAI--AYRK---FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266
Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R PPP    A+ +       + +C +K+  +RP   +++
Sbjct: 267 YRLPPPMDCPAALYQ-----LMLDCWQKDRNNRPKFEQIV 301

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ +  GM +L +   +HRDL   NVL+  +   K+ DFGLSR   +  D   T  G  
Sbjct: 156 MLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGK 215
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQI--- 121
               W APE +         + +  DVW+ G+   E L  G+ P+ +M     +  +   
Sbjct: 216 IPIRWTAPEAI-----AFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG 270
Query: 122 VRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R P P G   A +        + +C  K+   RP  S+++
Sbjct: 271 YRLPAPMGCPHALH------QLMLDCWHKDRAQRPRFSQIV 305

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I  GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 150 MLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGK 209
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMH---PTRALFQI 121
               W APE +     +   + +  DVW+ GI   E +  G+ P+ DM      +A+ + 
Sbjct: 210 IPVRWTAPEAI-----QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEG 264
Query: 122 VRNP-----PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R P     P GL++           + +C +K    RP   +++
Sbjct: 265 YRLPAPMDCPAGLHQ----------LMLDCWQKERAERPKFEQIV 299

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 100 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 157
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 158 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 207

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMXGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMXGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ +  GM +L +   +HRDL   NVL+  +   K+ DFGLSR   +  D   T  G  
Sbjct: 156 MLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGK 215
Query: 69  ---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALFQI--- 121
               W APE +         + +  DVW+ G+   E L  G+ P+ +M     +  +   
Sbjct: 216 IPIRWTAPEAI-----AFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG 270
Query: 122 VRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
            R P P G   A +        + +C  K+   RP  S+++
Sbjct: 271 YRLPAPMGCPHALH------QLMLDCWHKDRAQRPRFSQIV 305

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMXGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMXGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMXGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 101 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 158
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 159 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 208

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+  T   ++ 
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA--TVFRYNN 159
Query: 61  KKTFL----GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
           ++  L    G+  ++APE++    K  + +   +DVW+ GI    +  G+ P++
Sbjct: 160 RERLLNKMCGTLPYVAPELL----KRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++  HI   +   + G+ +LH++ ++HRDL+ +N+LL ++G +K+ DFGL++   +    
Sbjct: 109 LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA 168
Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
               + +  + APE++         Y   +D+WA+G    EL
Sbjct: 169 YXHQVVTRWYRAPELLFGARM----YGVGVDMWAVGCILAEL 206

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 28/182 (15%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-------------EVKIVDFGLSRETA 55
           +L++I +G+  LH   +IHRDL+  N+L++                 + I DFGL ++  
Sbjct: 120 LLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLD 179
Query: 56  NTFDKKKTFLGSPS----WMAPEIMRCGH--KEVDGYDNRIDVWALG-ITAIELGDGKPP 108
           +     +  L +PS    W APE++   +  +        ID++++G +    L  GK P
Sbjct: 180 SGQXXFRXNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP 239
Query: 109 FEDMHP-----TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           F D +       R +F +  +    L+  S  ++   D I++ ++ +P  RP   ++L H
Sbjct: 240 FGDKYSRESNIIRGIFSL--DEMKCLHDRSLIAEA-TDLISQMIDHDPLKRPTAMKVLRH 296
Query: 164 PF 165
           P 
Sbjct: 297 PL 298

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 151 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 208
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 209 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 257
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 258 -------QRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 307
Query: 179 VN 180
           ++
Sbjct: 308 LS 309

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 151 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 208
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 209 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 257
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 258 -------QRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 307
Query: 179 VN 180
           ++
Sbjct: 308 LS 309

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 150 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 207
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 208 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 256
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 257 -------QRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 306
Query: 179 VN 180
           ++
Sbjct: 307 LS 308

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 150 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 207
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 208 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 256
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 257 -------QRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 306
Query: 179 VN 180
           ++
Sbjct: 307 LS 308

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS-- 69
           +I  GM +L     +HRDL   N+L+  +  VKI DFGL++      DK    +  P   
Sbjct: 119 QICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL--PLDKDXXVVREPGQS 176
Query: 70  ---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              W APE +       + +  + DVW+ G+   EL
Sbjct: 177 PIFWYAPESL-----SDNIFSRQSDVWSFGVVLYEL 207

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I   M +L   + +HRD+   N+L+     VK+ DFGLSR   +    K +    P  W
Sbjct: 121 QICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKW 180
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPF---EDMHPTRALFQIVRNPP 126
           M+PE +         +    DVW   +   E L  GK PF   E+      L +  R P 
Sbjct: 181 MSPESIN-----FRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPK 235
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           P L     ++      +  C + +P  RP  +EL+
Sbjct: 236 PDLCPPVLYT-----LMTRCWDYDPSDRPRFTELV 265

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 20/109 (18%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK------ 62
           + ++I+  + ++H   +IHRDL+  N+ + +   VKI DFGL++    + D  K      
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNL 180
Query: 63  --------TFLGSPSWMAPEIMR-CGHKEVDGYDNRIDVWALGITAIEL 102
                   + +G+  ++A E++   GH     Y+ +ID+++LGI   E+
Sbjct: 181 PGSSDNLTSAIGTAMYVATEVLDGTGH-----YNEKIDMYSLGIIFFEM 224

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I   M +L   + +HRD+   N+L+     VK+ DFGLSR   +    K +    P  W
Sbjct: 117 QICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKW 176
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPF---EDMHPTRALFQIVRNPP 126
           M+PE +         +    DVW   +   E L  GK PF   E+      L +  R P 
Sbjct: 177 MSPESIN-----FRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPK 231
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           P L     ++      +  C + +P  RP  +EL+
Sbjct: 232 PDLCPPVLYT-----LMTRCWDYDPSDRPRFTELV 261

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 20/109 (18%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK------ 62
           + ++I+  + ++H   +IHRDL+  N+ + +   VKI DFGL++    + D  K      
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNL 180
Query: 63  --------TFLGSPSWMAPEIMR-CGHKEVDGYDNRIDVWALGITAIEL 102
                   + +G+  ++A E++   GH     Y+ +ID+++LGI   E+
Sbjct: 181 PGSSDNLTSAIGTAMYVATEVLDGTGH-----YNEKIDMYSLGIIFFEM 224

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRETANTFDKKKTFLGSPSW 70
           I+  +  LH+N +IH DL+  N+LL + G   +K++DFG    +     +  T + S  +
Sbjct: 209 ILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFG---SSCYEHQRVYTXIQSRFY 265
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP--PFEDMHPTRA-LFQIVRNPPP 127
            APE++         Y   ID+W+LG    EL  G P  P ED     A + +++  P  
Sbjct: 266 RAPEVILGAR-----YGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQ 320
Query: 128 GLYRASNWSQHYV 140
            L  AS  ++++V
Sbjct: 321 KLLDASKRAKNFV 333

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP-SW 70
           +I   M +L   + +HRD+   N+L+     VK+ DFGLSR   +    K +    P  W
Sbjct: 133 QICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKW 192
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPF---EDMHPTRALFQIVRNPP 126
           M+PE +         +    DVW   +   E L  GK PF   E+      L +  R P 
Sbjct: 193 MSPESI-----NFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPK 247
Query: 127 PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           P L     ++      +  C + +P  RP  +EL+
Sbjct: 248 PDLCPPVLYT-----LMTRCWDYDPSDRPRFTELV 277

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF 64
            +  +L+ I  GM +L +   +HRDL   N+L+  +   K+ DFGLSR   +  +   T 
Sbjct: 125 QLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 184
Query: 65  LGSP---SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDM---HPTRA 117
            G      W APE +         + +  DVW+ GI   E+   G+ P+ +M      +A
Sbjct: 185 RGGKIPIRWTAPEAI-----AFRKFTSASDVWSYGIVMWEVVSYGERPYWEMTNQDVIKA 239
Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
           + +  R P P    A+ +       + +C +K    RP   E++
Sbjct: 240 VEEGYRLPSPMDCPAALYQ-----LMLDCWQKERNSRPKFDEIV 278

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRETANTFDKKKTFLGSPSW 70
           I+  +  LH+N +IH DL+  N+LL + G   +K++DFG S        +  T + S  +
Sbjct: 209 ILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS---CYEHQRVYTXIQSRFY 265
Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP--PFEDMHPTRA-LFQIVRNPPP 127
            APE++         Y   ID+W+LG    EL  G P  P ED     A + +++  P  
Sbjct: 266 RAPEVILGAR-----YGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQ 320
Query: 128 GLYRASNWSQHYV 140
            L  AS  ++++V
Sbjct: 321 KLLDASKRAKNFV 333

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDKKKTF 64
           I+  + ++   + F+H   + HRD++  N+L+ +KD  +K+ DFG +++   + +     
Sbjct: 143 ISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS-EPSVAX 201
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR- 123
           + S  + APE+M  G  E   Y   ID+W++G    EL  GKP F        L +I++ 
Sbjct: 202 ICSRFYRAPELM-LGATE---YTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQI 257
Query: 124 ------------NPP------PGLYRASNWSQHY--------VDFIAECLEKNPEHRPYM 157
                       NP       P L +A +W +          +D + + L   P+ R   
Sbjct: 258 MGTPTKEQMIRMNPHYTEVRFPTL-KAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINP 316
Query: 158 SELLEHPFITSL 169
            E + HPF   L
Sbjct: 317 YEAMAHPFFDHL 328

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS-- 69
           +I  GM +L     +HRDL   N+L+  +  VKI DFGL++      DK    +  P   
Sbjct: 135 QICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL--PLDKDYYVVREPGQS 192
Query: 70  ---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              W APE +       + +  + DVW+ G+   EL
Sbjct: 193 PIFWYAPESL-----SDNIFSRQSDVWSFGVVLYEL 223

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 151 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 208
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 209 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 257
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 258 -------QRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 307
Query: 179 VN 180
           ++
Sbjct: 308 LS 309

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 151 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 208
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 209 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 257
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 258 -------QRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 307
Query: 179 VN 180
           ++
Sbjct: 308 LS 309

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS-- 69
           +I  GM +L     +HRDL   N+L+  +  VKI DFGL++      DK    +  P   
Sbjct: 122 QICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL--PLDKDYYVVREPGQS 179
Query: 70  ---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              W APE +       + +  + DVW+ G+   EL
Sbjct: 180 PIFWYAPESL-----SDNIFSRQSDVWSFGVVLYEL 210

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 36/182 (19%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 150 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 207
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 208 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 256
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHLST 178
                   R S   QH + +   CL   P  RP   E+  HP++    LP+   ++HL +
Sbjct: 257 -------QRVSXECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHS 306
Query: 179 VN 180
           ++
Sbjct: 307 LS 308

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPS-- 69
           +I  GM +L     +HRDL   N+L+  +  VKI DFGL++      DK    +  P   
Sbjct: 123 QICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL--PLDKDYYVVREPGQS 180
Query: 70  ---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL 102
              W APE +       + +  + DVW+ G+   EL
Sbjct: 181 PIFWYAPESL-----SDNIFSRQSDVWSFGVVLYEL 211

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 36/178 (20%)
Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFG---LSRETANT-FDKKKTFLG 66
           +++  +   H   V+HRD++  N+L+  + GE+K++DFG   L ++T  T FD  + +  
Sbjct: 118 QVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVY-- 175
Query: 67  SPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPF---EDMHPTRALFQIV 122
           SP    PE +R  H+    Y  R   VW+LGI   ++  G  PF   E++   +  F+  
Sbjct: 176 SP----PEWIRY-HR----YHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFR-- 224
Query: 123 RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLHL 176
                   R S+  QH + +   CL   P  RP   E+  HP++    LP+   ++HL
Sbjct: 225 -------QRVSSECQHLIRW---CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHL 272

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGL--------SRETANT--- 57
           I  +I   + FLH   ++HRDL+ SN+  T D  VK+ DFGL          +T  T   
Sbjct: 123 IFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMP 182
Query: 58  -FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE-DMHPT 115
            + +    +G+  +M+PE +       + Y +++D+++LG+   EL     PF   M   
Sbjct: 183 AYARHTGQVGTKLYMSPEQIHG-----NSYSHKVDIFSLGLILFELLY---PFSTQMERV 234
Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
           R L  +     P L+    +   YV  + + L  +P  RP    ++E+     L
Sbjct: 235 RTLTDVRNLKFPPLF-TQKYPCEYV-MVQDMLSPSPMERPEAINIIENAVFEDL 286

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTF---- 64
           I  +I   + FLH   ++HRDL+ SN+  T D  VK+ DFGL        +++       
Sbjct: 169 IFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMP 228
Query: 65  --------LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
                   +G+  +M+PE +       + Y +++D+++LG+   EL      F       
Sbjct: 229 AYATHXGQVGTKLYMSPEQIHG-----NNYSHKVDIFSLGLILFELLYS---FSTQMERV 280
Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
            +   VRN    L     + Q ++  + + L  +P  RP  ++++E+    +L
Sbjct: 281 RIITDVRNLKFPLLFTQKYPQEHM-MVQDMLSPSPTERPEATDIIENAIFENL 332

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRETANTFDKKKTF--LGSP 68
           I+  +  LH+N +IH DL+  N+LL + G   +K++DFG     ++ ++ ++ +  + S 
Sbjct: 209 ILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFG-----SSCYEHQRVYXXIQSR 263
Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP--PFEDMHPTRA-LFQIVRNP 125
            + APE++         Y   ID+W+LG    EL  G P  P ED     A + +++  P
Sbjct: 264 FYRAPEVILGAR-----YGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMP 318
Query: 126 PPGLYRASNWSQHYV 140
              L  AS  ++++V
Sbjct: 319 XQKLLDASKRAKNFV 333

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 34/192 (17%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDKKKTF 64
           I   + +++  + ++H   + HRD++  N+LL    G +K++DFG S +     +   + 
Sbjct: 143 IKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFG-SAKILIAGEPNVSX 201
Query: 65  LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR- 123
           + S  + APE++         Y   ID+W+ G    EL  G+P F        L +I++ 
Sbjct: 202 ICSRYYRAPELIFGA----TNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKV 257
Query: 124 ------------NPP------PGLYRASNWSQHY--------VDFIAECLEKNPEHRPYM 157
                       NP       P + R   +S+ +        +D I+  LE  P  R   
Sbjct: 258 LGTPSREQIKTMNPNYMEHKFPQI-RPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTA 316
Query: 158 SELLEHPFITSL 169
            E L HPF   L
Sbjct: 317 IEALCHPFFDEL 328

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 6   IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSR---ETANTF 58
           +  +L +I+ G+ +LH N V+HRDL+ +N+L+  +    G VKI D G +R         
Sbjct: 130 VKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL 189
Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
                 + +  + APE++         Y   ID+WA+G    EL   +P F
Sbjct: 190 ADLDPVVVTFWYRAPELLLGARH----YTKAIDIWAIGCIFAELLTSEPIF 236

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKT 63
           ++   + ++   + ++H   + HRD++  N+LL  D  V K+ DFG +++     +   +
Sbjct: 123 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVS 181
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
           ++ S  + APE++         Y + IDVW+ G    EL  G+P F        L +I++
Sbjct: 182 YICSRYYRAPELIF----GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKT 63
           ++   + ++   + ++H   + HRD++  N+LL  D  V K+ DFG +++     +   +
Sbjct: 123 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVS 181
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
           ++ S  + APE++         Y + IDVW+ G    EL  G+P F        L +I++
Sbjct: 182 YICSRYYRAPELIF----GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 42/194 (21%)
Query: 16  GMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPE 74
           G + L   +V HRD++  NVL+ + DG +K+ DFG +++ + + +    ++ S  + APE
Sbjct: 143 GCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPS-EPNVAYICSRYYRAPE 201
Query: 75  IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR----------- 123
           ++  G++    Y   +D+W++G    E+  G+P F   +    L +IVR           
Sbjct: 202 LI-FGNQH---YTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLR 257
Query: 124 --NP---------PPGLYRASNWSQHYV-------DFIAECLEKNPEHRPYMSELLEHPF 165
             NP           G+  ++ +S H +       D ++  L+  PE R    E L HP+
Sbjct: 258 KLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPY 317
Query: 166 I-------TSLPEN 172
                   T LP N
Sbjct: 318 FDELHDPATKLPNN 331

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKT 63
           ++   + ++   + ++H   + HRD++  N+LL  D  V K+ DFG +++     +   +
Sbjct: 136 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVS 194
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
           ++ S  + APE++         Y + IDVW+ G    EL  G+P F        L +I++
Sbjct: 195 YICSRYYRAPELIF----GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 250

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 9   ILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGE-----VKIVDFGLSRETANTFDKK 61
           ++ +I  G+ ++   +  ++HRDLR  N+ L    E      K+ DFGLS+++ ++    
Sbjct: 127 LMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVS-- 184
Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF-Q 120
              LG+  WMAPE +     E + Y  + D ++  +    +  G+ PF++    +  F  
Sbjct: 185 -GLLGNFQWMAPETIGA---EEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFIN 240
Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           ++R          +      + I  C   +P+ RP+ S +++
Sbjct: 241 MIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK 282

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKT 63
           ++   + ++   + ++H   + HRD++  N+LL  D  V K+ DFG +++     +   +
Sbjct: 128 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVS 186
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
           ++ S  + APE++         Y + IDVW+ G    EL  G+P F        L +I++
Sbjct: 187 YICSRYYRAPELIF----GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 242

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 5   HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFDKKKT 63
           ++   + ++   + ++H   + HRD++  N+LL  D  V K+ DFG +++     +   +
Sbjct: 123 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVS 181
Query: 64  FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR 123
           ++ S  + APE++         Y + IDVW+ G    EL  G+P F        L +I++
Sbjct: 182 YICSRYYRAPELIF----GATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-88
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-81
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-77
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-76
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-74
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	5e-74
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-73
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-72
3aln_A	327	Dual specificity mitogen-activated protein kinase;	8e-67
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-66
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-65
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-64
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-64
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-62
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-57
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	6e-54
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-53
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	4e-52
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	9e-52
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-51
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-51
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	2e-51
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-50
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	2e-50
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	2e-50
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-50
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-49
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-49
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	7e-49
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-48
2a19_B	284	Interferon-induced, double-stranded RNA-activated	9e-47
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-46
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-45
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-44
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-44
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-43
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-43
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	9e-42
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-40
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-38
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-38
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	6e-38
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	8e-38
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-37
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-37
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-37
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-35
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-35
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-35
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-35
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-35
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-34
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-34
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-34
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	6e-34
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-33
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-33
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	6e-33
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-32
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-32
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-32
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-31
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-31
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-31
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-31
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-31
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	3e-31
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-31
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	6e-31
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	8e-31
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-30
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-30
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-30
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-30
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-30
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-29
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-29
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-29
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-29
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	8e-29
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	8e-29
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	9e-29
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	9e-29
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-28
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-28
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-28
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-28
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-28
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-28
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-28
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-28
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-28
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-28
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-28
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-28
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-28
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-28
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	5e-28
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	5e-28
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	5e-28
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	8e-28
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	9e-28
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-27
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-27
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-27
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-27
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-27
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-27
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-27
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-27
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-27
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-27
3soc_A	322	Activin receptor type-2A; structural genomics cons	7e-27
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	7e-27
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-27
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-26
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-26
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-26
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-26
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-26
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-26
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	5e-26
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-25
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-25
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-25
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-25
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-25
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-25
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	5e-25
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	5e-25
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-24
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-24
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-24
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-24
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-24
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-24
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	7e-24
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-23
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-23
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-23
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-22
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-22
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-22
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-22
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-22
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-22
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-22
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	9e-22
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-21
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-21
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	8e-21
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	9e-21
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	9e-21
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-20
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-20
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-20
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-20
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-20
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	2e-20
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	4e-20
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-20
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-20
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-20
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-20
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	9e-20
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-19
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-19
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-19
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-19
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-19
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-19
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	8e-19
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-18
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-18
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-18
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-18
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-18
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-18
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-18
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-18
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-18
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	5e-18
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-18
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-18
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	7e-18
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	8e-18
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	9e-18
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	9e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-17
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-17
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-17
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-17
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-17
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-17
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-17
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-17
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-17
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-17
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-17
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	5e-17
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	6e-17
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	7e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	8e-17
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-16
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-16
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-16
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-16
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-16
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-16
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-16
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-16
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-16
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-16
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	3e-16
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-16
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-16
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	4e-16
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	4e-16
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-16
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	8e-16
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	8e-16
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-15
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-15
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-15
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-15
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-15
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-14
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-14
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-14
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-14
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-13
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-12
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-06
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	8e-06
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	9e-06
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	4e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	4e-04
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	8e-04

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score =  271 bits (696), Expect = 4e-88
 Identities = 83/172 (48%), Positives = 116/172 (67%), Gaps = 1/172 (0%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ IA+I +EI+ G+  LH++ VIHRD++G NVLLT++ EVK+VDFG+S +   T  +
Sbjct: 126 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 185

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE++ C       YD + D+W+LGITAIE+ +G PP  DMHP RALF 
Sbjct: 186 RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL 245

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           I RNP P L ++  WS+ +  FI  CL KN   RP   +L++HPFI   P  
Sbjct: 246 IPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQPNE 296

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score =  254 bits (651), Expect = 1e-81
 Identities = 69/172 (40%), Positives = 113/172 (65%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + ++++  + FLH   +IHRDL+  NVL+T +G++++ DFG+S +   T  K
Sbjct: 114 LTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQK 173

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + D+W+LGIT IE+   +PP  +++P R L +
Sbjct: 174 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLK 233

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           I ++ PP L   S WS  + DF+   L+KNPE RP  ++LLEHPF++S+  N
Sbjct: 234 IAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSN 285

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score =  244 bits (624), Expect = 2e-77
 Identities = 72/168 (42%), Positives = 111/168 (66%), Gaps = 5/168 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  IA IL+  + G+ +LH    IHRD++  N+LL  +G  K+ DFG++ +  +T  K
Sbjct: 122 LTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAK 181

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE+++       GY+   D+W+LGITAIE+ +GKPP+ D+HP RA+F 
Sbjct: 182 RNTVIGTPFWMAPEVIQEI-----GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFM 236

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I  NPPP   +   WS ++ DF+ +CL K+PE R   ++LL+HPF+ S
Sbjct: 237 IPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRS 284

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score =  240 bits (614), Expect = 4e-76
 Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 7/177 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA IL+EI+ G+ +LH    IHRD++ +NVLL++ GEVK+ DFG++ +  +T  K
Sbjct: 116 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 175

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + TF+G+P WMAPE+++        YD++ D+W+LGITAIEL  G+PP  ++HP + LF 
Sbjct: 176 RNTFVGTPFWMAPEVIKQS-----AYDSKADIWSLGITAIELARGEPPHSELHPMKVLFL 230

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           I +N PP L    N+S+   +F+  CL K P  RP   ELL+H FI    +   +L+
Sbjct: 231 IPKNNPPTL--EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLT 285

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score =  235 bits (602), Expect = 4e-74
 Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 5/168 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E+ IA + + ++  + +LH   VIHRD++  ++LLT DG VK+ DFG   + +    K
Sbjct: 138 LNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK 197

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +K+ +G+P WMAPE++         Y   +D+W+LGI  IE+ DG+PP+    P +A+ +
Sbjct: 198 RKSLVGTPYWMAPEVISRS-----LYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKR 252

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           +  +PPP L  +   S    DF+   L ++P+ R    ELL+HPF+  
Sbjct: 253 LRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQ 300

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score =  234 bits (599), Expect = 5e-74
 Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 5/168 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 173 RSTMVGTPYWMAPEVVTRK-----AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I  N  P L      S  + DF+  CLE + E R    ELL+H F+  
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKI 275

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score =  232 bits (593), Expect = 6e-73
 Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 16/179 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           + E  IA IL+E++ G+ +LH+N  IHRD++  N+LL +DG V+I DFG+S   A   D 
Sbjct: 118 LDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDI 177

Query: 60  ----KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT 115
                +KTF+G+P WMAPE+M    ++V GYD + D+W+ GITAIEL  G  P+    P 
Sbjct: 178 TRNKVRKTFVGTPCWMAPEVM----EQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM 233

Query: 116 RALFQIVRNPPPGL-------YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           + L   ++N PP L            + + +   I+ CL+K+PE RP  +ELL H F  
Sbjct: 234 KVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQ 292

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score =  232 bits (593), Expect = 2e-72
 Identities = 62/168 (36%), Positives = 104/168 (61%), Gaps = 7/168 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA +    + G+ +LH +++IHRD++  N+LL++ G VK+ DFG +    +    
Sbjct: 151 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSA----SIMAP 206

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             +F+G+P WMAPE++    +    YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 207 ANSFVGTPYWMAPEVILAMDE--GQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 264

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I +N  P L ++ +WS+++ +F+  CL+K P+ RP    LL+H F+  
Sbjct: 265 IAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 311

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score =  217 bits (554), Expect = 8e-67
 Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E+ +  I    +  +  L EN  +IHRD++ SN+LL + G +K+ DFG+S +  ++  
Sbjct: 122 IPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSI- 180

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRAL 118
            K    G   +MAPE +        GYD R DVW+LGIT  EL  G+ P+   +     L
Sbjct: 181 AKTRDAGCRPYMAPERIDPSASR-QGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQL 239

Query: 119 FQIVRNPPPGL--YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
            Q+V+  PP L       +S  +++F+  CL K+   RP   ELL+HPFI    E  + +
Sbjct: 240 TQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERAVEV 299

Query: 177 S 177
           +
Sbjct: 300 A 300

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score =  216 bits (552), Expect = 1e-66
 Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 3/179 (1%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E+ +  +   I+  + +L E H VIHRD++ SN+LL + G++K+ DFG+S    +   
Sbjct: 121 IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK- 179

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RAL 118
            K    G  ++MAPE +         YD R DVW+LGI+ +EL  G+ P+++       L
Sbjct: 180 AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVL 239

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
            ++++  PP L     +S  +  F+ +CL K+   RP  ++LLEH FI      ++ ++
Sbjct: 240 TKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRYETLEVDVA 298

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score =  212 bits (543), Expect = 1e-65
 Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 5/179 (2%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + E  +  I   I+  +  LH    VIHRD++ SNVL+   G+VK+ DFG+S    +   
Sbjct: 106 IPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDV- 164

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRAL 118
            K    G   +MAPE +     +  GY  + D+W+LGIT IEL   + P++    P + L
Sbjct: 165 AKDIDAGCKPYMAPERINPELNQ-KGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL 223

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
            Q+V  P P L  A  +S  +VDF ++CL+KN + RP   EL++HPF T        ++
Sbjct: 224 KQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHESKGTDVA 281

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score =  212 bits (542), Expect = 2e-64
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 53/218 (24%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E  IA+IL+ ++  + ++H    +HR ++ S++L++ DG+V +     +    +   +
Sbjct: 125 MNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQR 184

Query: 61  KKT-------FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
           ++         +    W++PE+++     + GYD + D++++GITA EL +G  PF+DM 
Sbjct: 185 QRVVHDFPKYSVKVLPWLSPEVLQQ---NLQGYDAKSDIYSVGITACELANGHVPFKDMP 241

Query: 114 PTRALFQIVRNPPPGL-------------------------------------------Y 130
            T+ L + +    P L                                            
Sbjct: 242 ATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHP 301

Query: 131 RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
               +S H+  F+ +CL++NP+ RP  S LL H F   
Sbjct: 302 YHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQ 339

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  204 bits (521), Expect = 5e-62
 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 11/181 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSR-----ET 54
           + E    + L + + G+ +LH   ++H D++  NVLL+ DG    + DFG +        
Sbjct: 147 LPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206

Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
             +        G+ + MAPE++          D ++D+W+     + + +G  P+     
Sbjct: 207 GKSLLTGDYIPGTETHMAPEVVMG-----KPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR 261

Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
                +I   PPP      + +      I E L K P HR    EL             L
Sbjct: 262 GPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGL 321

Query: 175 H 175
            
Sbjct: 322 K 322

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score =  190 bits (485), Expect = 4e-57
 Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 8/175 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDK 60
           +EQ I F  K+I+ G+ +LH+N ++HRD++G NVL+ T  G +KI DFG S+  A     
Sbjct: 120 NEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC 179

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALF 119
            +TF G+  +MAPEI+    K   GY    D+W+LG T IE+  GKPPF ++  P  A+F
Sbjct: 180 TETFTGTLQYMAPEIID---KGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMF 236

Query: 120 QI-VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
           ++ +    P +    + S     FI +C E +P+ R   ++LL   F+    +  
Sbjct: 237 KVGMFKVHPEI--PESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSSKKK 289

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score =  192 bits (490), Expect = 6e-54
 Identities = 92/346 (26%), Positives = 154/346 (44%), Gaps = 45/346 (13%)

Query: 166 ITSLPENDLHLSTVN---CQYKDQELQTMH------VEDLAALETISEDNIVQELEERHN 216
           I S   +     TV+    Q K  +    +      VED++ L  ++E  +   L  R+N
Sbjct: 52  IVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111

Query: 217 SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEE 276
               Y++ G  L+ +NP   + +Y  +    +K + R++  PHI+A++D AY+ M+   +
Sbjct: 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171

Query: 277 AQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGE-KIEKCV---NVI-HAIGNAGTP 331
            Q +++ GE+ AGKT + K ++++L  +       G   +E+ +   N I  A GNA T 
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT 231

Query: 332 INQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQA----NFHIFYYFYD 387
            N NS+R   ++++ F S+G +SGA    Y LEK RV       Q+    N+HIFY    
Sbjct: 232 RNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVF-----QSETERNYHIFYQLLA 286

Query: 388 AMEAAGELDKYFLSPGRKYRYLRA------DVTDDKLPKGPRETPDTNVAKFQEIYQNLI 441
              A  E     L+    + YL            D               +F+   Q + 
Sbjct: 287 GATAE-EKKALHLAGPESFNYLNQSGCVDIKGVSDS-------------EEFKITRQAMD 332

Query: 442 DIEF-DDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAAN 486
            + F  + QM IF  ++A IL +G ++FE  A   A L +      
Sbjct: 333 IVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKDKTALNA 377

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score =  193 bits (492), Expect = 1e-53
 Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 45/346 (13%)

Query: 166 ITSLPENDLHLSTVN---CQYKDQELQTMH------VEDLAALETISEDNIVQELEERHN 216
           I S   +     TV+    Q K  +    +      VED++ L  ++E  +   L  R+N
Sbjct: 52  IVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYN 111

Query: 217 SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEE 276
               Y++ G  L+ +NP   + +Y  +    +K + R++  PHI+A++D AY+ M+   +
Sbjct: 112 QDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171

Query: 277 AQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGE-KIEKCV---NVI-HAIGNAGTP 331
            Q +++ GE+ AGKT + K ++++L  +       G   +E+ +   N I  A GNA T 
Sbjct: 172 NQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTT 231

Query: 332 INQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQA----NFHIFYYFYD 387
            N NS+    ++++ F ++G +SGA    Y LEK RV       Q+    N+HIFY    
Sbjct: 232 RNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVF-----QSETERNYHIFYQLLA 286

Query: 388 AMEAAGELDKYFLSPGRKYRYLRA------DVTDDKLPKGPRETPDTNVAKFQEIYQNLI 441
              A  E     L+    + YL            D+              +F+   Q + 
Sbjct: 287 GATAE-EKKALHLAGPESFNYLNQSGCVDIKGVSDE-------------DEFKITRQAMD 332

Query: 442 DIEF-DDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAAN 486
            + F  + QM IF  ++A IL +G ++FE  A   A L +      
Sbjct: 333 IVGFSQEEQMSIFK-IIAGILHLGNIKFEKGAGEGAVLKDKTALNA 377

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score =  186 bits (475), Expect = 4e-52
 Identities = 93/315 (29%), Positives = 155/315 (49%), Gaps = 41/315 (13%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           V D   L  I+E+  ++ L  RH S N Y+++GDV++  NP  +LN+Y       Y  + 
Sbjct: 10  VPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRY 69

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
           + +  PH+YA+A+ AY+ M   +E Q ++++GE+ AGKT + K +++ L F+    +  G
Sbjct: 70  KYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 129

Query: 313 EKIEKCV---N-VIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV 368
           E+I K +   N ++ A GNA T  N NS+R   YM++ F + G   G     Y LEK RV
Sbjct: 130 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRV 189

Query: 369 TGNRDPLQA----NFHIFYYFYDAMEAAGELDKYFLSPG-RKYRYLRA------DVTDDK 417
            G     +     +FHIFY     +  + +LD+  L+P    Y YL+          DD 
Sbjct: 190 VG-----RTQGERSFHIFYQMLKGLSQS-KLDELGLTPNAPAYEYLKKSGCFDVSTIDDS 243

Query: 418 LPKGPRETPDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEF-----ESS 471
                         +F+ I + +  +   +  Q  I+  +LAAIL IG + F     + +
Sbjct: 244 -------------GEFKIIVKAMETLGLKESDQNSIWR-ILAAILHIGNITFAEAAEQRT 289

Query: 472 AENTAELANPEVAAN 486
              T ++++ +  A 
Sbjct: 290 GTTTVKVSDTKSLAA 304

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score =  187 bits (478), Expect = 9e-52
 Identities = 84/330 (25%), Positives = 144/330 (43%), Gaps = 45/330 (13%)

Query: 182 QYKDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
           +    ++Q M+       ED+A L  ++E +++  L ER+ S   Y++ G   + INP  
Sbjct: 45  RLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYK 104

Query: 236 HLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLK 295
            L +Y       Y+ K R +  PH+YAV + AY+ M+   E Q I+  GE+ AGKT + K
Sbjct: 105 QLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTK 164

Query: 296 HLLKHLIFLGQG-----AAKVGEKIEKCV---NVI-HAIGNAGTPINQNSTRHVLYMQVT 346
            ++++L  +           V  ++E+ +   N I  A GNA T  N NS+R   ++++ 
Sbjct: 165 KVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIN 224

Query: 347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQA----NFHIFYYFYDAMEAAGELDKYFLSP 402
           F  +G + GA    Y LEK R        QA    +FHIFY                L P
Sbjct: 225 FDVAGYIVGANIETYLLEKSRAIR-----QAKDECSFHIFYQLLGGAGEQ-LKADLLLEP 278

Query: 403 GRKYRYLR----ADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVL 457
              YR+L     +    ++               FQE  ++L  + F  +  + +   ++
Sbjct: 279 CSHYRFLTNGPSSSPGQER-------------ELFQETLESLRVLGFSHEEIISMLR-MV 324

Query: 458 AAILLIGEVEFESSA-ENTAELANPEVAAN 486
           +A+L  G +  +     + A + +   A  
Sbjct: 325 SAVLQFGNIALKRERNTDQATMPDNTAAQK 354

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  177 bits (451), Expect = 1e-51
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             E  I     +I   +  +H+  ++HRD++  N+ LTKDG V++ DFG++R   +T + 
Sbjct: 122 FQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVEL 181

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            +  +G+P +++PEI  C +K    Y+N+ D+WALG    EL   K  FE       + +
Sbjct: 182 ARACIGTPYYLSPEI--CENK---PYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLK 236

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           I+    P +    ++S      +++  ++NP  RP ++ +LE  FI    E  L    + 
Sbjct: 237 IISGSFPPVS--LHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKFLSPQLIA 294

Query: 181 CQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSK 218
            ++  +       + + A    S  N +  +  +  +K
Sbjct: 295 EEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKITK 332

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score =  175 bits (446), Expect = 1e-51
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 15/171 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANT 57
           M  + +    ++I+ G+ FLH     +IHRDL+  N+ +T   G VKI D GL+     +
Sbjct: 126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS 185

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
           F   K  +G+P +MAPE+        + YD  +DV+A G+  +E+   + P+ +      
Sbjct: 186 F--AKAVIGTPEFMAPEMYE------EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ 237

Query: 118 LFQIVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +++ V +   P              + I  C+ +N + R  + +LL H F 
Sbjct: 238 IYRRVTSGVKPASFD--KVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 286

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score =  185 bits (473), Expect = 2e-51
 Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 39/311 (12%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNH-YSFVGDVLLFINPNTHLNLYGTKYHFKYKFK 251
             DL AL  + E  ++  L+ R       Y++ G VL+ INP   L +YG      Y  +
Sbjct: 71  ENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQ 130

Query: 252 SRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKV 311
           +  D +PHI+AVA+ AY+ M   E  Q I+++GE+ AGKT S K+ +++   +   A++ 
Sbjct: 131 NMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEA 190

Query: 312 GEKIEKCV---NVI-HAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
              +E+ V   N I  +IGNA T  N NS+R   Y+++ F    ++ GA    Y LEK R
Sbjct: 191 --NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248

Query: 368 VTGNRDPLQA----NFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRA------DVTDDK 417
           V       QA    N+HIFY    +     E     L     + Y +       D  DD 
Sbjct: 249 VVF-----QAEEERNYHIFYQLCASAALP-EFKTLRLGNANYFHYTKQGGSPVIDGIDDA 302

Query: 418 LPKGPRETPDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESS-AENT 475
                         +     Q    +   D  QM IF  +LA IL +G VEF S  +++ 
Sbjct: 303 -------------KEMVNTRQACTLLGISDSYQMGIFR-ILAGILHLGNVEFASRDSDSC 348

Query: 476 AELANPEVAAN 486
           A     +    
Sbjct: 349 AIPPKHDPLTI 359

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score =  175 bits (444), Expect = 2e-50
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 51/220 (23%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 128 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---------- 109
              +F+G+ S+M+PE ++        Y  + D+W++G++ +E+  G+ P           
Sbjct: 186 MANSFVGTRSYMSPERLQG-----THYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 240

Query: 110 ----------------------------EDMHPTRALF----QIVRNPPPGLYRASNWSQ 137
                                        D  P  A+F     IV  PPP L  +  +S 
Sbjct: 241 MFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKL-PSGVFSL 299

Query: 138 HYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
            + DF+ +CL KNP  R  + +L+ H FI      ++  +
Sbjct: 300 EFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDFA 339

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score =  182 bits (465), Expect = 2e-50
 Identities = 80/354 (22%), Positives = 158/354 (44%), Gaps = 44/354 (12%)

Query: 166 ITSLPENDLHLSTVNCQYKD-----QELQTMH------VEDLAALETISEDNIVQELEER 214
           I  +  + L +  +N + K       ++          VED  +L  ++E  ++  ++ R
Sbjct: 17  IVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVR 76

Query: 215 HNSKNHYSFVGDVLLFINPNTHL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMH 273
           ++    Y++V ++L+ +NP   +  +Y ++    Y+ KS     PH++A+AD A++DM  
Sbjct: 77  YSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKV 136

Query: 274 HEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPIN 333
            + +Q I+++GE+ AGKT + K +L++L         + ++I +   ++ A GNA T  N
Sbjct: 137 LKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRN 196

Query: 334 QNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQA----NFHIFYYFYDAM 389
            NS+R   ++++ F     + G     Y LEK R+       Q     N+HIFY      
Sbjct: 197 NNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICV-----QGKEERNYHIFYRLCAGA 251

Query: 390 EAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLIDI------ 443
                 ++  LS    +RYL    T     K   +    N    + +    +        
Sbjct: 252 SED-IRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDH 310

Query: 444 -EF-------------DDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEV 483
            +F             D+ ++++F  V+A +L +G ++FE +  +T+   N + 
Sbjct: 311 GDFIRMCTAMKKIGLDDEEKLDLFR-VVAGVLHLGNIDFEEA-GSTSGGCNLKN 362

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score =  182 bits (465), Expect = 2e-50
 Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 44/349 (12%)

Query: 166 ITSLPENDLHLSTVN---CQYKDQELQTMH------VEDLAALETISEDNIVQELEERHN 216
           I S     +   T        K+ ++   +      +ED+A L  + E  ++  L++R+ 
Sbjct: 51  IVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYG 110

Query: 217 SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEE 276
           S   Y++ G   + +NP   L +Y  +    Y+ K RS+  PHI++++D+AYQ M+   E
Sbjct: 111 SWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRE 170

Query: 277 AQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEK-------IEKCV---NVI-HAI 325
            Q I++ GE+ AGKT + K ++++   +     +  +        +E  +   N    A 
Sbjct: 171 NQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAF 230

Query: 326 GNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQA----NFHI 381
           GNA T  N NS+R   ++++ FG++GKL+ A    Y LEK RV       Q     ++HI
Sbjct: 231 GNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIF-----QLKAERDYHI 285

Query: 382 FYYFYDAMEAAGELDKYFLSPG-RKYRYLRADVTDDKLPKGPRETPDTN-VAKFQEIYQN 439
           FY      +    LD   ++     Y ++          +G       +   +       
Sbjct: 286 FYQILSNKKPE-LLDMLLITNNPYDYAFIS---------QGETTVASIDDAEELMATDNA 335

Query: 440 LIDIEF-DDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAAN 486
              + F  + +  ++  +  AI+  G ++F+    E  AE    E A  
Sbjct: 336 FDVLGFTSEEKNSMYK-LTGAIMHFGNMKFKLKQREEQAEPDGTEEADK 383

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  172 bits (439), Expect = 3e-50
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 11/166 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  +   L++ +  +  LH   ++H D++ +N+ L   G  K+ DFGL  E       
Sbjct: 154 LPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA-GA 212

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            +   G P +MAPE+++        Y    DV++LG+T +E+             + L Q
Sbjct: 213 GEVQEGDPRYMAPELLQ------GSYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQ 266

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               P       +  S      +   LE +P+ R     LL  P +
Sbjct: 267 GYLPPEF----TAGLSSELRSVLVMMLEPDPKLRATAEALLALPVL 308

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score =  182 bits (463), Expect = 1e-49
 Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 39/311 (12%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNH-YSFVGDVLLFINPNTHLNLYGTKYHFKYKFK 251
             DL AL  + E  ++  L+ R       Y++ G VL+ INP   L +YG      Y  +
Sbjct: 71  ENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQ 130

Query: 252 SRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKV 311
           +  D +PHI+AVA+ AY+ M   E  Q I+++GE+ AGKT S K+ +++   +   A++ 
Sbjct: 131 NMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEA 190

Query: 312 GEKIEKCV---NVI-HAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
              +E+ V   N I  +IGNA T  N NS+R   Y+++ F    ++ GA    Y LEK R
Sbjct: 191 --NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248

Query: 368 VTGNRDPLQA----NFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLR------ADVTDDK 417
           V       QA    N+HIFY    +     E     L     + Y +       D  DD 
Sbjct: 249 VVF-----QAEEERNYHIFYQLCASAALP-EFKTLRLGNANYFHYTKQGGSPVIDGIDDA 302

Query: 418 LPKGPRETPDTNVAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESS-AENT 475
                         +     Q    +   D  QM IF  +LA IL +G VEF S  +++ 
Sbjct: 303 -------------KEMVNTRQACTLLGISDSYQMGIFR-ILAGILHLGNVEFASRDSDSC 348

Query: 476 AELANPEVAAN 486
           A     +    
Sbjct: 349 AIPPKHDPLTI 359

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  169 bits (430), Expect = 6e-49
 Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+ +     ++ + +  +H   V+HRD++ +NV +T  G VK+ D GL R  ++    
Sbjct: 133 IPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA 192

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRAL 118
             + +G+P +M+PE          GY+ + D+W+LG    E+   + PF  + M+     
Sbjct: 193 AHSLVGTPYYMSPER--IHEN---GYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLC 247

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +I +   P L  + ++S+     +  C+  +PE RP ++ + +    
Sbjct: 248 KKIEQCDYPPL-PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKR 294

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score =  178 bits (454), Expect = 7e-49
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 50/333 (15%)

Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K  ++Q+M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 70  KKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 129

Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHL 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT + K +
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKV 189

Query: 298 LKHLIFLGQGAAKVGEK--------IEKCV---NVI-HAIGNAGTPINQNSTRHVLYMQV 345
           + +L  +     K  E+        +E  +   N +  A GNA T  N NS+R   ++++
Sbjct: 190 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 249

Query: 346 TFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQA----NFHIFYYFYDAMEAAGELDKYFLS 401
            FG +GK++GA    Y LEK RVT      Q     N+HIFY            D   ++
Sbjct: 250 HFGPTGKIAGADIETYLLEKSRVTY-----QQSAERNYHIFYQICSNAIPE-LNDVMLVT 303

Query: 402 PG-RKYRYLRADVT-----DDKLPKGPRETPDTNVAKFQEIYQNLIDIEF-DDIQMEIFS 454
           P    Y ++          DD               +F+   +    + F  + +  +F 
Sbjct: 304 PDSGLYSFINQGCLTVDNIDDV-------------EEFKLCDEAFDILGFTKEEKQSMFK 350

Query: 455 NVLAAILLIGEVEF-ESSAENTAELANPEVAAN 486
              A+IL +GE++F +   E  AE      A  
Sbjct: 351 -CTASILHMGEMKFKQRPREEQAESDGTAEAEK 382

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  178 bits (452), Expect = 3e-48
 Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 37/330 (11%)

Query: 182 QYKDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNT 235
                ++Q M+      VED+A L  ++E +++  L ER+ S   Y++ G   + INP  
Sbjct: 68  TLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127

Query: 236 HLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLK 295
            L +Y  K    YK K R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT + K
Sbjct: 128 QLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTK 187

Query: 296 HLLKHLIFLGQGAAKVGEKIEKCVN----------------VIHAIGNAGTPINQNSTRH 339
            ++++L  +        +                       ++ A GNA T  N NS+R 
Sbjct: 188 KVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRF 247

Query: 340 VLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYF 399
             ++++ F  +G + GA    Y LEK R    +   +  FHIFYY           +   
Sbjct: 248 GKFIRINFDVTGYIVGANIETYLLEKSRAI-RQAKDERTFHIFYYLIAGASEQ-MRNDLL 305

Query: 400 LSPGRKYRYLRADVTDDKLPKGPRETPDTN-VAKFQEIYQNLIDIEF-DDIQMEIFSNVL 457
           L     Y +L           G    P       FQE  + +  + F ++ Q  I   V+
Sbjct: 306 LEGFNNYTFLS---------NGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILR-VV 355

Query: 458 AAILLIGEVEF-ESSAENTAELANPEVAAN 486
           +++L +G + F +    + A + +   A  
Sbjct: 356 SSVLQLGNIVFKKERNTDQASMPDNTAAQK 385

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  162 bits (413), Expect = 9e-47
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + +     + ++I  G+ ++H   +I+RDL+ SN+ L    +VKI DFGL     N   K
Sbjct: 119 LDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND-GK 177

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +    G+  +M+PE      +    Y   +D++ALG+   EL        +       F 
Sbjct: 178 RTRSKGTLRYMSPEQ--ISSQ---DYGKEVDLYALGLILAELLHVCDTAFETS---KFFT 229

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +R+       +  + +     + + L K PE RP  SE+L    +
Sbjct: 230 DLRDGII----SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTV 271

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  161 bits (410), Expect = 3e-46
 Identities = 32/187 (17%), Positives = 74/187 (39%), Gaps = 32/187 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE------------------ 42
             E  +  +L ++  G+ ++H   ++H D++ SN+ +++                     
Sbjct: 112 FKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKV 171

Query: 43  -VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE 101
             KI D G     ++     +   G   ++A E++    +E   +  + D++AL +T + 
Sbjct: 172 MFKIGDLGHVTRISSP----QVEEGDSRFLANEVL----QENYTHLPKADIFALALTVVC 223

Query: 102 LGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL 161
               +P   +        +I +   P +      SQ + + +   +  +PE RP    L+
Sbjct: 224 AAGAEPLPRNGDQ---WHEIRQGRLPRI--PQVLSQEFTELLKVMIHPDPERRPSAMALV 278

Query: 162 EHPFITS 168
           +H  + S
Sbjct: 279 KHSVLLS 285

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  163 bits (414), Expect = 2e-45
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 24/254 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-----VKIVDFGLSR---E 53
                  +L++  +G+  LH  +++HRDL+  N+L++           I DFGL +    
Sbjct: 116 LGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175

Query: 54  TANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDM 112
             ++F ++    G+  W+APE++    KE       +D+++ G +    + +G  PF   
Sbjct: 176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKE--NPTYTVDIFSAGCVFYYVISEGSHPFGKS 233

Query: 113 HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
              +A   +       L+   +      + I + +  +P+ RP    +L+HPF  SL + 
Sbjct: 234 LQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSLEKQ 293

Query: 173 DLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEE----------RHNSKNHYS 222
                 V+ + + + L       +  LE      +  +  E          R        
Sbjct: 294 LQFFQDVSDRIEKESLDG---PIVKQLERGGRAVVKMDWRENITVPLQTDLRKFRTYKGG 350

Query: 223 FVGDVLLFINPNTH 236
            V D+L  +    H
Sbjct: 351 SVRDLLRAMRNKKH 364

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  157 bits (400), Expect = 3e-44
 Identities = 49/234 (20%), Positives = 99/234 (42%), Gaps = 16/234 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN--TF 58
           +         K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T 
Sbjct: 105 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTS 163

Query: 59  DKKKTFLGSPSWMAPEIMR------CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM 112
             K + +G+ ++M PE ++         K       + DVW+LG     +  GK PF+ +
Sbjct: 164 VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 223

Query: 113 -HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
            +    L  I+       +      +   D +  CL+++P+ R  + ELL HP++     
Sbjct: 224 INQISKLHAIIDPNHEIEF-PDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH 282

Query: 172 NDLHLSTVNCQYKDQELQTMHVED-----LAALETISEDNIVQELEERHNSKNH 220
               ++    +     L  +   +     L A +T+ E     E     +SK  
Sbjct: 283 PVNQMAKGTTEEMKYVLGQLVGLNSPNSILKAAKTLYEHYSGGESHNSSSSKTF 336

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  158 bits (400), Expect = 8e-44
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 15/228 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN--TF 58
           +         K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T 
Sbjct: 152 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTS 210

Query: 59  DKKKTFLGSPSWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM 112
             K + +G+ ++M PE +      R   K       + DVW+LG     +  GK PF+ +
Sbjct: 211 VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 270

Query: 113 -HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
            +    L  I+       +      +   D +  CL+++P+ R  + ELL HP++     
Sbjct: 271 INQISKLHAIIDPNHEIEF-PDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQ---- 325

Query: 172 NDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKN 219
              H      +   +E++ +  + +      S     + L E ++   
Sbjct: 326 IQTHPVNQMAKGTTEEMKYVLGQLVGLNSPNSILKAAKTLYEHYSGGE 373

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  155 bits (393), Expect = 2e-43
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN--TF 58
           +         K ++  +  +H++ ++H DL+ +N L+  DG +K++DFG++ +     T 
Sbjct: 124 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTS 182

Query: 59  DKKKTFLGSPSWMAPEIM------RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM 112
             K + +G+ ++M PE +      R   K       + DVW+LG     +  GK PF+ +
Sbjct: 183 VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI 242

Query: 113 -HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            +    L  I+       +      +   D +  CL+++P+ R  + ELL HP++ 
Sbjct: 243 INQISKLHAIIDPNHEIEF-PDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQ 297

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  154 bits (391), Expect = 2e-43
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 25/182 (13%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-- 59
                  + ++I+  + ++H   +IHRDL+  N+ + +   VKI DFGL++    + D  
Sbjct: 114 QRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDIL 173

Query: 60  ------------KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKP 107
                          + +G+  ++A E++         Y+ +ID+++LGI   E+    P
Sbjct: 174 KLDSQNLPGSSDNLTSAIGTAMYVATEVL----DGTGHYNEKIDMYSLGIIFFEM--IYP 227

Query: 108 PF---EDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP 164
                E ++  + L  +    PP      N  +     I   ++ +P  RP    LL   
Sbjct: 228 FSTGMERVNILKKLRSVSIEFPPDFD--DNKMKVEKKIIRLLIDHDPNKRPGARTLLNSG 285

Query: 165 FI 166
           ++
Sbjct: 286 WL 287

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  149 bits (378), Expect = 9e-42
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHE-----NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA 55
           + E+ +  ++ ++   +   H      + V+HRDL+ +NV L     VK+ DFGL+R   
Sbjct: 108 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 167

Query: 56  NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT 115
           +     KTF+G+P +M+PE           Y+ + D+W+LG    EL    PPF      
Sbjct: 168 HDTSFAKTFVGTPYYMSPEQ--MNRM---SYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222

Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               +I       +     +S    + I   L     HRP + E+LE+P I
Sbjct: 223 ELAGKIREGKFRRI--PYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI 271

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  145 bits (367), Expect = 5e-40
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 21/180 (11%)

Query: 3   EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKK 62
                 I  +I   + FLH   ++HRDL+ SN+  T D  VK+ DFGL        +++ 
Sbjct: 117 RSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQT 176

Query: 63  TFL------------GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
                          G+  +M+PE +       + Y +++D+++LG+   EL    P   
Sbjct: 177 VLTPMPAYARHTGQVGTKLYMSPEQI-----HGNSYSHKVDIFSLGLILFEL--LYPFST 229

Query: 111 DMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
            M   R L  +     P L+  +         + + L  +P  RP    ++E+     L 
Sbjct: 230 QMERVRTLTDVRNLKFPPLF--TQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDLD 287

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  140 bits (355), Expect = 2e-38
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 16/183 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 112 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 171

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++        G+   +DVW++G     L  GKPPFE     +  + 
Sbjct: 172 KKVLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC-LKETYL 225

Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT------SLPEND 173
            ++      Y      +      I + L+ +P  RP ++ELL   F T       LP   
Sbjct: 226 RIKK---NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITC 282

Query: 174 LHL 176
           L +
Sbjct: 283 LTI 285

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  139 bits (353), Expect = 4e-38
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 7/160 (4%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLG 66
           I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+ E +      + +   G
Sbjct: 125 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRALFQIVRN- 124
           S  WMAPE++R   ++ + Y  + DV+A GI   EL  G+ P+ +++   + +  + R  
Sbjct: 185 SILWMAPEVIR--MQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGS 242

Query: 125 -PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             P      SN  +     +AECL+K  + RP    +L  
Sbjct: 243 LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAE 282

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  140 bits (354), Expect = 6e-38
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF 58
           + E+    +  ++  GM +LH  +  ++HR+L+  N+L+ K   VK+ DFGLSR  A+TF
Sbjct: 134 LDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF 193

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
              K+  G+P WMAPE++R         + + DV++ G+   EL   + P+ +++P + +
Sbjct: 194 LSSKSAAGTPEWMAPEVLRDEP-----SNEKSDVYSFGVILWELATLQQPWGNLNPAQVV 248

Query: 119 FQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             +         P      N +      I  C    P  RP  + +++ 
Sbjct: 249 AAVGFKCKRLEIP-----RNLNPQVAAIIEGCWTNEPWKRPSFATIMDL 292

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  140 bits (354), Expect = 8e-38
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 16/183 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E    + L++I+ G  +LH N VIHRDL+  N+ L +D EVKI DFGL+ +     ++
Sbjct: 138 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER 197

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           KK   G+P+++APE++        G+   +DVW++G     L  GKPPFE     +  + 
Sbjct: 198 KKVLCGTPNYIAPEVL-----SKKGHSFEVDVWSIGCIMYTLLVGKPPFET-SCLKETYL 251

Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT------SLPEND 173
            ++      Y      +      I + L+ +P  RP ++ELL   F T       LP   
Sbjct: 252 RIKK---NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITC 308

Query: 174 LHL 176
           L +
Sbjct: 309 LTI 311

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  137 bits (348), Expect = 2e-37
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    +   +
Sbjct: 106 FDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SR 163

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           +    G+  ++ PE++     E   +D ++D+W+LG+   E   GKPPFE         +
Sbjct: 164 RTDLCGTLDYLPPEMI-----EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKR 218

Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I R      +   ++ ++   D I+  L+ NP  RP + E+LEHP+IT
Sbjct: 219 ISR----VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWIT 262

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  136 bits (345), Expect = 6e-37
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE      + +IITGM++LH + ++HRDL  SN+LLT++  +KI DFGL+ +     +K
Sbjct: 109 FSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK 168

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T  G+P++++PEI          +    DVW+LG     L  G+PPF+     +    
Sbjct: 169 HYTLCGTPNYISPEIA-----TRSAHGLESDVWSLGCMFYTLLIGRPPFDT-DTVKNTLN 222

Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            V       Y   ++ S    D I + L +NP  R  +S +L+HPF++
Sbjct: 223 KVVL---ADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMS 267

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  134 bits (338), Expect = 1e-35
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 21/193 (10%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I ++L  I  G+  +H     HRDL+ +N+LL  +G+  ++D G   +     + 
Sbjct: 131 LTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEG 190

Query: 61  KKTFL---------GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED 111
            +  L          + S+ APE+     +     D R DVW+LG     +  G+ P++ 
Sbjct: 191 SRQALTLQDWAAQRCTISYRAPELFSV--QSHCVIDERTDVWSLGCVLYAMMFGEGPYDM 248

Query: 112 MH-PTRALFQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +     ++   V+N    P    +     S      +   +  +P  RP++  LL     
Sbjct: 249 VFQKGDSVALAVQNQLSIPQSPRH-----SSALWQLLNSMMTVDPHQRPHIPLLLSQLEA 303

Query: 167 TSLPENDLHLSTV 179
              P    H + +
Sbjct: 304 LQPPAPGQHTTQI 316

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  134 bits (337), Expect = 3e-35
 Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
               +  +  ++I     L    ++H      N+ +  DG + + D     +        
Sbjct: 192 GILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG--- 248

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT------ 115
                 P   AP            + + ++ W LG++   +     PF  + P       
Sbjct: 249 -PASSVPVTYAPREFLNASTA--TFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWK 305

Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
           R   ++           +         I   L  +   R    E +E P    L  
Sbjct: 306 RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQN 361

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  132 bits (335), Expect = 3e-35
 Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 19/200 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +       I +EI+ GM +LH   ++H+DL+  NV    +G+V I DFGL   +      
Sbjct: 127 LDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAG 185

Query: 61  KKT-----FLGSPSWMAPEIMRCGHKEVDG----YDNRIDVWALGITAIELGDGKPPFED 111
           ++        G    +APEI+R    + +     +    DV+ALG    EL   + PF+ 
Sbjct: 186 RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKT 245

Query: 112 MHPTRALFQIVRN---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
                 ++Q+                  +   D +  C     E RP  ++L++   +  
Sbjct: 246 QPAEAIIWQMGTGMKPNLS----QIGMGKEISDILLFCWAFEQEERPTFTKLMDM--LEK 299

Query: 169 LPENDLHLSTVNCQYKDQEL 188
           LP+ +  LS     +K  EL
Sbjct: 300 LPKRNRRLSHPGHFWKSAEL 319

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  132 bits (334), Expect = 4e-35
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 25/182 (13%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
                  I  +I   + FLH   ++HRDL+ SN+  T D  VK+ DFGL        +++
Sbjct: 162 EHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQ 221

Query: 62  KTFL------------GSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
                           G+  +M+PE +       + Y +++D+++LG+   EL      F
Sbjct: 222 TVLTPMPAYATHTGQVGTKLYMSPEQI-----HGNNYSHKVDIFSLGLILFELLY---SF 273

Query: 110 EDMHPTRALFQIVRNP--PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
                   +   VRN   P      +         + + L  +P  RP  ++++E+    
Sbjct: 274 STQMERVRIITDVRNLKFPLLF---TQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFE 330

Query: 168 SL 169
           +L
Sbjct: 331 NL 332

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  131 bits (331), Expect = 6e-35
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             EQ  A  ++E+   + + HE  VIHRD++  N+L+   GE+KI DFG S    +   +
Sbjct: 111 FDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS--LR 168

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           ++T  G+  ++ PE++     E   +D ++D+W  G+   E   G PPF+    T    +
Sbjct: 169 RRTMCGTLDYLPPEMI-----EGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRR 223

Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           IV        +   + S    D I++ L  +P  R  +  ++EHP++ 
Sbjct: 224 IVN----VDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVK 267

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  130 bits (328), Expect = 1e-34
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 9   ILKEIITGMVFLH--ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
              ++  GM FLH  E  +    L   +V++ +D   +I    +     +        + 
Sbjct: 116 FALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSP-----GRMY 170

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-- 124
           +P+W+APE ++   K  D      D+W+  +   EL   + PF D+       ++     
Sbjct: 171 APAWVAPEALQ--KKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGL 228

Query: 125 --PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
               P        S H    +  C+ ++P  RP    ++  
Sbjct: 229 RPTIP-----PGISPHVSKLMKICMNEDPAKRPKFDMIVPI 264

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  132 bits (332), Expect = 2e-34
 Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 17/177 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +       +  ++I  +  LH   ++H  LR  +++L + G V +  F            
Sbjct: 203 LVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVR----DGA 258

Query: 61  KKTFLGSPSWMAPEIMRC------GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
           +     S  +  PE+                     D WALG+    +     P      
Sbjct: 259 RVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAA 318

Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
                 I R+         N  Q     +   L    E R    + +E P    L  
Sbjct: 319 LGGSEWIFRSCK-------NIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRT 368

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  131 bits (331), Expect = 5e-34
 Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 8/172 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET-ANTFD 59
           +       +  ++I  +  LH   ++H  LR  +++L + G V +  F       A+   
Sbjct: 208 LVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVS 267

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
                   P   A  ++  G           D W LG+    +     P  D        
Sbjct: 268 PIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSE 327

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
            I R+         N  Q     +   L    E R    + +E P    L  
Sbjct: 328 WIFRSCK-------NIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRT 372

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  129 bits (327), Expect = 6e-34
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           +  Q I  I+K ++    ++H E ++ HRD++ SN+L+ K+G VK+ DFG S    +   
Sbjct: 148 IPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVD--K 205

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           K K   G+  +M PE         +G   ++D+W+LGI    +     PF        LF
Sbjct: 206 KIKGSRGTYEFMPPEFFS-NESSYNGA--KVDIWSLGICLYVMFYNVVPFSLKISLVELF 262

Query: 120 QIVRN-----PPPGLYRASNWSQHYV------------DFIAECLEKNPEHRPYMSELLE 162
             +R      P    +     +                DF+   L KNP  R    + L+
Sbjct: 263 NNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322

Query: 163 HPFITSLPENDLHLSTVNCQYKDQEL 188
           H ++      DL   +     K ++L
Sbjct: 323 HEWLADTNIEDLREFSKELYKKRKKL 348

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  128 bits (323), Expect = 1e-33
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE    F  +++I G+ +LH   +IHRD++ SN+L+ +DG +KI DFG+S E   +   
Sbjct: 134 LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL 193

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               +G+P++MAPE +    K   G    +DVWA+G+T      G+ PF D      L  
Sbjct: 194 LSNTVGTPAFMAPESLSETRKIFSGK--ALDVWAMGVTLYCFVFGQCPFMDER-IMCLHS 250

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            +++         + ++   D I   L+KNPE R  + E+  HP++T
Sbjct: 251 KIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT 297

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  129 bits (325), Expect = 5e-33
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 27/233 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-------------KDGEVKIVD 47
             E +   +L++I +G+  LH   +IHRDL+  N+L++             ++  + I D
Sbjct: 112 QKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD 171

Query: 48  FGLSR----ETANTFDKKKTFLGSPSWMAPEIMRCGHKEVD--GYDNRIDVWALG-ITAI 100
           FGL +      ++         G+  W APE++   +           ID++++G +   
Sbjct: 172 FGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYY 231

Query: 101 ELGDGKPPFEDMHPTRALFQIVRN----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPY 156
            L  GK PF D +   +   I+R              +      D I++ ++ +P  RP 
Sbjct: 232 ILSKGKHPFGDKYSRES--NIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPT 289

Query: 157 MSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQ 209
             ++L HP      +    L  V+    + E +      L   +  S+  I  
Sbjct: 290 AMKVLRHPLFWPKSKKLEFLLKVS-DRLEIENRDPPSALLMKFDAGSDFVIPS 341

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  127 bits (320), Expect = 6e-33
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 18/187 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRETANTFD 59
            E+ I+ I+++I + + +LH   + HRD++  N L + +    +K+VDFGLS+E     +
Sbjct: 166 REKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNN 225

Query: 60  KK----KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT 115
            +     T  G+P ++APE++   ++    Y  + D W+ G+    L  G  PF  ++  
Sbjct: 226 GEYYGMTTKAGTPYFVAPEVLNTTNE---SYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA 282

Query: 116 RALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
                 V N           N+   S    D ++  L +N + R      L+HP+I+   
Sbjct: 283 D-TISQVLN---KKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFS 338

Query: 171 ENDLHLS 177
           +    +S
Sbjct: 339 DKIYKMS 345

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  124 bits (314), Expect = 1e-32
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 23/168 (13%)

Query: 9   ILKEIITGMVFLHENH---VIHRDLRGSNVLLTKDGE--------VKIVDFGLSRETANT 57
              +I  GM +LH+     +IHRDL+ SN+L+ +  E        +KI DFGL+RE   T
Sbjct: 110 WAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRT 169

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
              K +  G+ +WMAPE++R        +    DVW+ G+   EL  G+ PF  +     
Sbjct: 170 --TKMSAAGAYAWMAPEVIRASM-----FSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV 222

Query: 118 LFQIVRN--PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            + +  N    P     S   + +   + +C   +P  RP  + +L+ 
Sbjct: 223 AYGVAMNKLALP---IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ 267

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score =  125 bits (315), Expect = 2e-32
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 23/220 (10%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E+  A I+++I T + FLH +++ HRD++  N+L T   KD  +K+ DFG ++ET    
Sbjct: 126 TEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ-- 183

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           +  +T   +P ++APE++         YD   D+W+LG I  I L  G PPF        
Sbjct: 184 NALQTPCYTPYYVAPEVLGPE-----KYDKSCDMWSLGVIMYILLC-GFPPFYSNTGQAI 237

Query: 118 LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT---SL 169
              + R    G Y      W   S+     I   L+ +P  R  +++ + HP+I     +
Sbjct: 238 SPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSMVV 297

Query: 170 PENDLHLSTVNCQYKDQ--ELQTMHVEDLAALETISEDNI 207
           P+  LH + V  + KD   E++      LA +  +  D +
Sbjct: 298 PQTPLHTARVLQEDKDHWDEVKEEMTSALATMR-VDYDQV 336

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  123 bits (311), Expect = 5e-32
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 29/173 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--------------T 54
             K+I +GM +LH  ++IHRDL   N L+ ++  V + DFGL+R                
Sbjct: 113 FAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLK 172

Query: 55  ANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP 114
                K+ T +G+P WMAPE++         YD ++DV++ GI   E+        D  P
Sbjct: 173 KPDRKKRYTVVGNPYWMAPEMINGRS-----YDEKVDVFSFGIVLCEIIGRVNADPDYLP 227

Query: 115 TRALFQIV-----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
               F +          P      N    +      C + +PE RP   +L  
Sbjct: 228 RTMDFGLNVRGFLDRYCP-----PNCPPSFFPITVRCCDLDPEKRPSFVKLEH 275

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  123 bits (310), Expect = 1e-31
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 21/186 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF 58
           +S   +  I  +    +  +H     +IHRDL+  N+LL+  G +K+ DFG +   ++  
Sbjct: 133 LSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYP 192

Query: 59  DKKK------------TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK 106
           D               T   +P +  PEI+            + D+WALG     L   +
Sbjct: 193 DYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFP--IGEKQDIWALGCILYLLCFRQ 250

Query: 107 PPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            PFED    R +      PP            +   I   L+ NPE R  ++E++     
Sbjct: 251 HPFEDGAKLRIVNGKYSIPPHDTQ-----YTVFHSLIRAMLQVNPEERLSIAEVVHQLQE 305

Query: 167 TSLPEN 172
            +   N
Sbjct: 306 IAAARN 311

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  122 bits (307), Expect = 1e-31
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 24/176 (13%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGE-----VKIVDFGLSRE 53
           +       ++ +I  G+ ++   +  ++HRDLR  N+ L    E      K+ DFGLS++
Sbjct: 119 IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQ 178

Query: 54  TANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
           + ++       LG+  WMAPE +    +    Y  + D ++  +    +  G+ PF++  
Sbjct: 179 SVHS---VSGLLGNFQWMAPETIGAEEES---YTEKADTYSFAMILYTILTGEGPFDEYS 232

Query: 114 PTRALFQI------VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             +  F        +R   P      +      + I  C   +P+ RP+ S +++ 
Sbjct: 233 YGKIKFINMIREEGLRPTIP-----EDCPPRLRNVIELCWSGDPKKRPHFSYIVKE 283

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  122 bits (308), Expect = 1e-31
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 25/213 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHE---NHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETAN 56
            +  H      +   G+ +LH      +IHRDL+  N+LL   G V KI DFG + +   
Sbjct: 99  YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PT 115
                K   GS +WMAPE+    +     Y  + DV++ GI   E+   + PF+++  P 
Sbjct: 159 HMTNNK---GSAAWMAPEVFEGSN-----YSEKCDVFSWGIILWEVITRRKPFDEIGGPA 210

Query: 116 RALFQIVRN---PP-PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH--PFITSL 169
             +   V N   PP        N  +     +  C  K+P  RP M E+++     +   
Sbjct: 211 FRIMWAVHNGTRPPLI-----KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265

Query: 170 PENDLHLSTVNCQYKDQELQTMHVEDLAALETI 202
           P  D  L    CQ+     +   VE        
Sbjct: 266 PGADEPLQY-PCQHSLPPGEDGRVEPYVDFAEF 297

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  122 bits (308), Expect = 3e-31
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 27/226 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE----VKIVDFGLSRETANT 57
           SE+  + +L  I   + +LH   V+HRDL+ SN+L   +      ++I DFG +++    
Sbjct: 114 SEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAE 173

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHP-- 114
                T   + +++APE++        GYD   D+W+LG +    L  G  PF +     
Sbjct: 174 NGLLMTPCYTANFVAPEVLER-----QGYDAACDIWSLGVLLYTMLT-GYTPFANGPDDT 227

Query: 115 TRALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT-- 167
              +   + +   G +      W   S    D +++ L  +P  R   + +L HP+I   
Sbjct: 228 PEEILARIGS---GKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHW 284

Query: 168 -SLPENDLHLSTVNCQYK---DQELQTMHVEDLAALETISEDNIVQ 209
             LP+  L+        K         ++      LE +    + Q
Sbjct: 285 DQLPQYQLNRQDAPHLVKGAMAATYSALNRNQSPVLEPVGRSTLAQ 330

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  122 bits (307), Expect = 3e-31
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   ++I++++++ +  +H+  V+HRDL+  N+L T    + E+KI+DFG +R      
Sbjct: 104 SETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN 163

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPF------ED 111
              KT   +  + APE++       +GYD   D+W+LG I    L  G+ PF        
Sbjct: 164 QPLKTPCFTLHYAAPELLNQ-----NGYDESCDLWSLGVILYTMLS-GQVPFQSHDRSLT 217

Query: 112 MHPTRALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
                 + + ++    G +      W   SQ   D I   L  +P  R  MS L  + ++
Sbjct: 218 CTSAVEIMKKIKK---GDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWL 274

Query: 167 T---SLPENDLHLSTVNCQYKDQELQTM 191
                L  N L    +           +
Sbjct: 275 QDGSQLSSNPLMTPDILGSSGAAVHTCV 302

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  121 bits (306), Expect = 3e-31
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRE----- 53
           +E   + +++++ + + FLH   + HRDL+  N+L     +   VKI DF L        
Sbjct: 109 NELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNG 168

Query: 54  --TANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFE 110
             +  +  +  T  GS  +MAPE++    +E   YD R D+W+LG I  I L  G PPF 
Sbjct: 169 DCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLS-GYPPFV 227

Query: 111 DMHPTRALFQIVRNPP---PGLYRA----------SNW---SQHYVDFIAECLEKNPEHR 154
               +   +      P     L+ +           +W   S    D I++ L ++ + R
Sbjct: 228 GRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQR 287

Query: 155 PYMSELLEHPFIT-SLPENDLHLSTV 179
              +++L+HP++    PEN L    V
Sbjct: 288 LSAAQVLQHPWVQGCAPENTLPTPMV 313

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  121 bits (306), Expect = 4e-31
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 16/200 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 111 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTR 116
               +T  G+P+++APE++        GY+  +D W+LG I  I L  G PPF +     
Sbjct: 171 -SLMRTLCGTPTYLAPEVLVSVGTA--GYNRAVDCWSLGVILFICLS-GYPPFSEHRTQV 226

Query: 117 ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
           +L   + +   G Y      W   S+  +D + + L  +P+ R    E L HP++     
Sbjct: 227 SLKDQITS---GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDM 283

Query: 172 NDLHLSTVNCQYKDQELQTM 191
                  ++ + +   L  +
Sbjct: 284 KRKFQDLLSEENESTALPQV 303

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  123 bits (310), Expect = 6e-31
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
           + E        +++  + +LHEN +IHRDL+  NVLL+   +D  +KI DFG S+    T
Sbjct: 236 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 295

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTR 116
               +T  G+P+++APE++        GY+  +D W+LG I  I L  G PPF +     
Sbjct: 296 -SLMRTLCGTPTYLAPEVLVSVGTA--GYNRAVDCWSLGVILFICLS-GYPPFSEHRTQV 351

Query: 117 ALFQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           +L   + +   G Y      W   S+  +D + + L  +P+ R    E L HP++  
Sbjct: 352 SLKDQITS---GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD 405

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  120 bits (302), Expect = 8e-31
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE+    I++ ++  +  LH+ +++HRDL+  N+LL  D  +K+ DFG S +     +K 
Sbjct: 122 SEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPG-EKL 180

Query: 62  KTFLGSPSWMAPEIMRCGHKEVD-GYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRALF 119
           +   G+PS++APEI+ C   +   GY   +D+W+ G I    L  G PPF        L 
Sbjct: 181 REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA-GSPPFWHRKQMLMLR 239

Query: 120 QIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
            I+     G Y+  +  W   S    D ++  L   P+ R    E L HPF  
Sbjct: 240 MIMS----GNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQ 288

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  121 bits (306), Expect = 1e-30
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E+ +   + E++  + +L    +IHRD++  N+LL + G V I DF ++        + 
Sbjct: 113 KEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE-TQI 171

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--DMHPTRALF 119
            T  G+  +MAPE+     ++  GY   +D W+LG+TA EL  G+ P+       ++ + 
Sbjct: 172 TTMAGTKPYMAPEMFSS--RKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIV 229

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-PYMSELLEHPF 165
                        S WSQ  V  + + LE NP+ R   +S++   P+
Sbjct: 230 HTFETTVVTY--PSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPY 274

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score =  121 bits (306), Expect = 1e-30
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 27/233 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET +  
Sbjct: 159 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH- 217

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTR- 116
           +   T   +P ++APE++         YD   D+W+LG I  I L  G PPF   H    
Sbjct: 218 NSLTTPCYTPYYVAPEVLGPE-----KYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAI 271

Query: 117 --ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI--- 166
              +   +R    G Y      W   S+     I   L+  P  R  ++E + HP+I   
Sbjct: 272 SPGMKTRIRM---GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS 328

Query: 167 TSLPENDLHLSTVNCQYKD--QELQTMHVEDLAALETISEDNIVQELEERHNS 217
           T +P+  LH S V  + K+  ++++      LA +    E   ++++E+  N 
Sbjct: 329 TKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASNP 381

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score =  120 bits (303), Expect = 1e-30
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 27/191 (14%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE+  A  +K+I+  + +LHEN ++HRDL+  N+L      D  +KI DFGLS+   +  
Sbjct: 146 SERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ- 204

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
              KT  G+P + APEI+R        Y   +D+W++G IT I L  G  PF D    + 
Sbjct: 205 VLMKTVCGTPGYCAPEILRG-----CAYGPEVDMWSVGIITYILLC-GFEPFYDERGDQF 258

Query: 118 LFQIVRN------PPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           +F+ + N       P        W   S +  D + + +  +P+ R    + L+HP++T 
Sbjct: 259 MFRRILNCEYYFISPW-------WDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTG 311

Query: 169 LPENDLHLSTV 179
              N +H+ T 
Sbjct: 312 KAANFVHMDTA 322

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  118 bits (298), Expect = 4e-30
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 35/213 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT----KDGEVKIVDFGLSRETAN 56
           + E     +L++++ GM  L EN ++HR+++  N++           K+ DFG +RE  +
Sbjct: 109 LPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED 168

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVD---GYDNRIDVWALGITAIELGDGKPPFEDMH 113
             ++  +  G+  ++ P++        D    Y   +D+W++G+T      G  PF    
Sbjct: 169 D-EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227

Query: 114 PTRA----LFQIVRNPPPGLYRA----------------------SNWSQHYVDFIAECL 147
             R     +++I+   P G                                    +A  L
Sbjct: 228 GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANIL 287

Query: 148 EKNPEHRPYMSELLEHPFITSLPENDLHLSTVN 180
           E + E      +         L   + H    +
Sbjct: 288 EADQEKCWGFDQFFAETSDI-LHRGNSHHHHHH 319

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  119 bits (300), Expect = 5e-30
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE+    I++ ++  + FLH N+++HRDL+  N+LL  + ++++ DFG S       +K 
Sbjct: 198 SEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPG-EKL 256

Query: 62  KTFLGSPSWMAPEIMRCGHKEV-DGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRALF 119
           +   G+P ++APEI++C   E   GY   +D+WA G I    L  G PPF        + 
Sbjct: 257 RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLA-GSPPFWHRRQIL-ML 314

Query: 120 QIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           +++     G Y+  +  W   S    D I+  L+ +PE R    + L+HPF  
Sbjct: 315 RMIME---GQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE 364

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  115 bits (290), Expect = 3e-29
 Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 23/192 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H N ++HR+L+  N+LL    K   VK+ DFGL+ E  ++ 
Sbjct: 103 SEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS- 161

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           +    F G+P +++PE+++      D Y   +D+WA G I  I L  G PPF D    R 
Sbjct: 162 EAWHGFAGTPGYLSPEVLKK-----DPYSKPVDIWACGVILYILLV-GYPPFWDEDQHRL 215

Query: 118 LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL--P 170
             QI      G Y   +  W   +      I   L  NP+ R    + L+ P+I +    
Sbjct: 216 YAQIKA----GAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRERV 271

Query: 171 ENDLHL-STVNC 181
            + +H   TV+C
Sbjct: 272 ASAIHRQDTVDC 283

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  120 bits (301), Expect = 4e-29
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 11/176 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANT 57
           + E  I  +L +I + + +LHEN +IHRDL+  N++L    +    KI+D G ++E    
Sbjct: 118 LKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQG 177

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
            +    F+G+  ++APE++         Y   +D W+ G  A E   G  PF        
Sbjct: 178 -ELCTEFVGTLQYLAPELLEQ-----KKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQ 231

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
               VR          +     V F +      P H   +       ++  +    
Sbjct: 232 WHGKVREKSNEHIVVYDDLTGAVKFSSVL--PTPNHLSGILAGKLERWLQCMLMWH 285

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  116 bits (293), Expect = 4e-29
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
                 F   EII G+ FLH   +++RDL+  N+LL KDG +KI DFG+ +E      K 
Sbjct: 116 DLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT 175

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
            TF G+P ++APEI+         Y++ +D W+ G+   E+  G+ PF        LF  
Sbjct: 176 NTFCGTPDYIAPEILLG-----QKYNHSVDWWSFGVLLYEMLIGQSPFHG-QDEEELFHS 229

Query: 121 IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-PYMSELLEHPF 165
           I  +    P  L       +   D + +   + PE R     ++ +HP 
Sbjct: 230 IRMDNPFYPRWL------EKEAKDLLVKLFVREPEKRLGVRGDIRQHPL 272

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  118 bits (298), Expect = 5e-29
 Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 15/173 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E   A I+K++++G+ +LH+++++HRDL+  N+LL    KD  +KIVDFGLS    N  
Sbjct: 134 NEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ- 192

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  LG+  ++APE++R        YD + DVW++G+    L  G PPF        L
Sbjct: 193 KKMKERLGTAYYIAPEVLR------KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEIL 246

Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
            ++ +      + +  W   S+   D I + L+ + + R    + LEHP+I  
Sbjct: 247 RKVEKGKYT--FDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKE 297

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  115 bits (291), Expect = 8e-29
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 22/174 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EII+ ++FLH+  +I+RDL+  NVLL  +G  K+ DFG+ +E        
Sbjct: 122 DEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTT 181

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
            TF G+P ++APEI++        Y   +D WA+G+   E+  G  PFE       LF+ 
Sbjct: 182 ATFCGTPDYIAPEILQE-----MLYGPAVDWWAMGVLLYEMLCGHAPFEA-ENEDDLFEA 235

Query: 121 IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPF 165
           I+ +    P  L       +     +   + KNP  R           +L HPF
Sbjct: 236 ILNDEVVYPTWL------HEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPF 283

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  117 bits (296), Expect = 8e-29
 Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   A I++++++G+ ++H+N ++HRDL+  N+LL    KD  ++I+DFGLS     + 
Sbjct: 124 SEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS- 182

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  +G+  ++APE++         YD + DVW+ G+    L  G PPF   +    L
Sbjct: 183 KKMKDKIGTAYYIAPEVLH------GTYDEKCDVWSTGVILYILLSGCPPFNGANEYDIL 236

Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
            ++ +      +    W   S+   D I + L   P  R    + L+H +I +  +  +
Sbjct: 237 KKVEKGKYT--FELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQI 293

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  114 bits (289), Expect = 9e-29
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+ + F L E+   +  LH   +I+RDL+  N+LL ++G +K+ DFGLS+E+ +   K 
Sbjct: 124 TEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA 183

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            +F G+  +MAPE++        G+    D W+ G+   E+  G  PF+     +    +
Sbjct: 184 YSFCGTVEYMAPEVVNR-----RGHTQSADWWSFGVLMFEMLTGTLPFQG-KDRKETMTM 237

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           +     G+      S      +    ++NP +R       + E+  H F
Sbjct: 238 ILKAKLGM--PQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSF 284

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  114 bits (289), Expect = 9e-29
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 21/173 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F L EI   +  LH+  +I+RDL+  N++L   G VK+ DFGL +E+ +     
Sbjct: 119 MEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVT 178

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
            TF G+  +MAPEI+        G++  +D W+LG    ++  G PPF      +     
Sbjct: 179 HTFCGTIEYMAPEILMR-----SGHNRAVDWWSLGALMYDMLTGAPPFTG-ENRKKTIDK 232

Query: 121 IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           I++     PP L      +Q   D + + L++N   R         E+  HPF
Sbjct: 233 ILKCKLNLPPYL------TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPF 279

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  113 bits (286), Expect = 1e-28
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 20/173 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE ++A ++K+++  + + H  HV+H+DL+  N+L         +KI+DFGL+    +  
Sbjct: 122 SEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD- 180

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           +      G+  +MAPE+ +           + D+W+ G +    L  G  PF        
Sbjct: 181 EHSTNAAGTALYMAPEVFK------RDVTFKCDIWSAGVVMYFLLT-GCLPFTG-TSLEE 232

Query: 118 LFQIVRNPPPGLYR-ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           + Q            A      +   VD + + L K+PE RP  +++L H + 
Sbjct: 233 VQQKATY---KEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWF 282

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  113 bits (286), Expect = 1e-28
 Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT----KDGEVKIVDFGLSRETAN 56
           ++E      LK+I+ G+ +LH   + H DL+  N++L      +  +K++DFG++ +   
Sbjct: 105 LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 164

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPT 115
             ++ K   G+P ++APEI+       +      D+W++G IT I L  G  PF      
Sbjct: 165 G-NEFKNIFGTPEFVAPEIVNY-----EPLGLEADMWSIGVITYILLS-GASPFLGETKQ 217

Query: 116 RALFQIVR-----NPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
             L  I       +          +   S+   DFI   L K+P+ R  +++ LEH +I 
Sbjct: 218 ETLTNISAVNYDFDEEY-------FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIK 270

Query: 168 SLPENDLHLS 177
           ++   ++   
Sbjct: 271 AIRRRNVRGE 280

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score =  114 bits (287), Expect = 1e-28
 Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 11/197 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
                      ++I G+ +LH   ++H+D++  N+LLT  G +KI   G++         
Sbjct: 106 FPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAAD 165

Query: 61  K--KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
              +T  GSP++  PEI   G     G+  ++D+W+ G+T   +  G  PFE  +    L
Sbjct: 166 DTCRTSQGSPAFQPPEIAN-GLDTFSGF--KVDIWSAGVTLYNITTGLYPFEGDN-IYKL 221

Query: 119 FQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPENDLHL 176
           F+ +     G Y           D +   LE  P  R  + ++ +H  F    P  +  +
Sbjct: 222 FENIGK---GSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPAEAPV 278

Query: 177 STVNCQYKDQELQTMHV 193
                       ++M V
Sbjct: 279 PIPPSPDTKDRWRSMTV 295

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  113 bits (285), Expect = 1e-28
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 21/181 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   A I+K++ +G+ ++H+++++HRDL+  N+LL    KD ++KI+DFGLS       
Sbjct: 119 SEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN- 177

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
            K K  +G+  ++APE++R        YD + DVW+ G I  I L  G PPF        
Sbjct: 178 TKMKDRIGTAYYIAPEVLR------GTYDEKCDVWSAGVILYILLS-GTPPFYG-KNEYD 229

Query: 118 LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           + + V     G Y      W   S    D I + L  +P  R   ++ LEHP+I      
Sbjct: 230 ILKRVET---GKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSE 286

Query: 173 D 173
           +
Sbjct: 287 E 287

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  117 bits (294), Expect = 1e-28
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 15/184 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   A I+K++ +G+ ++H+++++HRDL+  N+LL    KD ++KI+DFGLS       
Sbjct: 119 SEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN- 177

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K K  +G+  ++APE++R        YD + DVW+ G+    L  G PPF        +
Sbjct: 178 TKMKDRIGTAYYIAPEVLR------GTYDEKCDVWSAGVILYILLSGTPPFYG-KNEYDI 230

Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH 175
            + V       +    W   S    D I + L  +P  R   ++ LEHP+I         
Sbjct: 231 LKRVETGKYA-FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSETPT 289

Query: 176 LSTV 179
           +S +
Sbjct: 290 ISDL 293

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  113 bits (285), Expect = 2e-28
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 32/186 (17%)

Query: 9   ILKEIITGMVFLHENH--------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           I+  I +G+  LH           + HRDL+  N+L+ K+G+  I D GL+   + + + 
Sbjct: 110 IVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQ 169

Query: 60  ---KKKTFLGSPSWMAPEIMRC-GHKEVDGYDNRIDVWALGI----------TAIELGDG 105
                   +G+  +MAPE++      +      R+D+WA G+          +   + D 
Sbjct: 170 LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDY 229

Query: 106 KPPFEDMHPTRALFQIVRN--------PP-PGLYRASNWSQHYVDFIAECLEKNPEHRPY 156
           KPPF D+ P    F+ +R         P  P  + +          + EC  +NP  R  
Sbjct: 230 KPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLT 289

Query: 157 MSELLE 162
              + +
Sbjct: 290 ALRIKK 295

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  114 bits (287), Expect = 2e-28
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 21/173 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +     
Sbjct: 103 TEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
           KTF G+P ++APE++       + Y   +D W LG+   E+  G+ PF +      LF+ 
Sbjct: 163 KTFCGTPEYLAPEVLED-----NDYGRAVDWWGLGVVMYEMMCGRLPFYN-QDHERLFEL 216

Query: 121 IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           I+      P  L      S      +A  L+K+P+ R         E++EH F
Sbjct: 217 ILMEEIRFPRTL------SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRF 263

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  116 bits (293), Expect = 2e-28
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 15/177 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
            E   A I+K+I++G+ +LH+++++HRD++  N+LL        +KIVDFGLS   +   
Sbjct: 144 DECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKD- 202

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            K +  LG+  ++APE+++        Y+ + DVW+ G+    L  G PPF   +    +
Sbjct: 203 YKLRDRLGTAYYIAPEVLK------KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDII 256

Query: 119 FQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
            ++ +      +  ++W   S    + I   L  +   R    E L   +I     N
Sbjct: 257 KKVEKGKYY--FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYANN 311

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  114 bits (288), Expect = 3e-28
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 20/172 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EI + + +LH  ++++RDL+  N+LL   G + + DFGL +E        
Sbjct: 137 LEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTT 196

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
            TF G+P ++APE++         YD  +D W LG    E+  G PPF   + T  ++  
Sbjct: 197 STFCGTPEYLAPEVLHK-----QPYDRTVDWWCLGAVLYEMLYGLPPFYSRN-TAEMYDN 250

Query: 121 IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR----PYMSELLEHPF 165
           I+  P    P +      +      +   L+K+   R        E+  H F
Sbjct: 251 ILNKPLQLKPNI------TNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVF 296

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  114 bits (287), Expect = 3e-28
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 22/177 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E  +   + EI+  +  LH+  +I+RD++  N+LL  +G V + DFGLS+E      ++
Sbjct: 157 TEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER 216

Query: 62  -KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRA- 117
              F G+  +MAP+I+R G     G+D  +D W+LG+   EL  G  PF  +    ++A 
Sbjct: 217 AYDFCGTIEYMAPDIVRGGDS---GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE 273

Query: 118 LFQ-IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           + + I+++    P  +      S    D I   L K+P+ R         E+ EH F
Sbjct: 274 ISRRILKSEPPYPQEM------SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF 324

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  113 bits (286), Expect = 3e-28
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 22/189 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H+N++IHRD++   VLL        VK+  FG++ +   + 
Sbjct: 128 SEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESG 187

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
                 +G+P +MAPE+++      + Y   +DVW  G I  I L  G  PF        
Sbjct: 188 LVAGGRVGTPHFMAPEVVKR-----EPYGKPVDVWGCGVILFILLS-GCLPF--YGTKER 239

Query: 118 LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE- 171
           LF+ +     G Y+     W   S+   D +   L  +P  R  + E L HP++      
Sbjct: 240 LFEGIIK---GKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRY 296

Query: 172 -NDLHLSTV 179
              +HL   
Sbjct: 297 AYKIHLPET 305

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  114 bits (287), Expect = 3e-28
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT----KDGEVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPT 115
              + K   G+P ++APEI+       +      D+W++G IT I L  G  PF      
Sbjct: 172 G-VEFKNIFGTPEFVAPEIVNY-----EPLGLEADMWSIGVITYILLS-GASPFLGDTKQ 224

Query: 116 RALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
             L  I        Y      +   S+   DFI + L K    R  + E L HP+IT + 
Sbjct: 225 ETLANITA----VSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVD 280

Query: 171 END 173
              
Sbjct: 281 TQQ 283

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  113 bits (286), Expect = 4e-28
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E H  F   EI  G+ FL    +I+RDL+  NV+L  +G +KI DFG+ +E        
Sbjct: 119 KEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTT 178

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ- 120
           KTF G+P ++APEI+         Y   +D WA G+   E+  G+ PFE       LFQ 
Sbjct: 179 KTFCGTPDYIAPEIIAY-----QPYGKSVDWWAFGVLLYEMLAGQAPFEG-EDEDELFQS 232

Query: 121 IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           I+ +    P  +      S+  V      + K+P  R         ++ EH F
Sbjct: 233 IMEHNVAYPKSM------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 279

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  113 bits (284), Expect = 4e-28
 Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 17/212 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           ++E+ I   + ++   + FLH +++ H D+R  N++    +   +KI++FG +R+     
Sbjct: 99  LNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG- 157

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           D  +    +P + APE+ +      D      D+W+LG +  + L  G  PF      + 
Sbjct: 158 DNFRLLFTAPEYYAPEVHQH-----DVVSTATDMWSLGTLVYVLLS-GINPFLA-ETNQQ 210

Query: 118 LFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL--PEN 172
           + + + N     +    +   S   +DF+   L K  + R   SE L+HP++       +
Sbjct: 211 IIENIMNAEYT-FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERVS 269

Query: 173 DLHLSTVNCQYKDQELQTMHVEDLAALETISE 204
              + T+  +     L    +  + +   IS 
Sbjct: 270 TKVIRTLKHRRYYHTLIKKDLNMVVSAARISC 301

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  113 bits (285), Expect = 5e-28
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 21/178 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D  
Sbjct: 108 PEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT 167

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA---- 117
            TF G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+ +  +      
Sbjct: 168 STFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQN 222

Query: 118 ----LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEHPF 165
               LFQ++      + R  + S      +   L K+P+ R         +++  HPF
Sbjct: 223 TEDYLFQVILEKQIRIPR--SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPF 278

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score =  113 bits (284), Expect = 5e-28
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 23/226 (10%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M+E       ++II  + + H + ++HRDL+  N+LL  +  VKI DFGLS    N    
Sbjct: 105 MTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLS----NIMTD 160

Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               KT  GSP++ APE++    K   G    +DVW+ GI    +  G+ PF+D      
Sbjct: 161 GNFLKTSCGSPNYAAPEVIN--GKLYAG--PEVDVWSCGIVLYVMLVGRLPFDDEF-IPN 215

Query: 118 LFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPENDLH 175
           LF+ V +    +Y   ++ S      I   +  +P  R  + E+   P F  +LP+    
Sbjct: 216 LFKKVNS---CVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNLPDYLRP 272

Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHY 221
           +  V   Y D  +    V  L      SED IV+ L    +  N  
Sbjct: 273 MEEVQGSYADSRI----VSKLGEAMGFSEDYIVEALRS--DENNEV 312

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  114 bits (286), Expect = 5e-28
 Identities = 42/249 (16%), Positives = 87/249 (34%), Gaps = 41/249 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT----KDGEVKIVDFGLSRETAN 56
           + E     +L++++ GM  L EN ++HR+++  N++           K+ DFG +RE  +
Sbjct: 109 LPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED 168

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVD---GYDNRIDVWALGITAIELGDGKPPFEDMH 113
             ++  +  G+  ++ P++        D    Y   +D+W++G+T      G  PF    
Sbjct: 169 D-EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227

Query: 114 PTRA----LFQIVRNPPPGLYRA----------------------SNWSQHYVDFIAECL 147
             R     +++I+   P G                                    +A  L
Sbjct: 228 GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANIL 287

Query: 148 EKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDLAAL-ETISEDN 206
           E + E      +         L    +H+ ++  Q    ++            E + +  
Sbjct: 288 EADQEKCWGFDQFFAETS-DILHRMVIHVFSLQ-QMTAHKIYIHSYNTATIFHELVYKQT 345

Query: 207 IV----QEL 211
            +    QEL
Sbjct: 346 KIISSNQEL 354

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  112 bits (282), Expect = 8e-28
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 27/186 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT----KDGEVKIVDFGLSRETAN 56
           +SE+     +K+I+ G+ +LH   + H DL+  N++L         +K++DFGL+ E  +
Sbjct: 112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPT 115
              + K   G+P ++APEI+       +      D+W++G IT I L  G  PF      
Sbjct: 172 G-VEFKNIFGTPEFVAPEIVNY-----EPLGLEADMWSIGVITYILLS-GASPFLGDTKQ 224

Query: 116 RALFQIVR-----NPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
             L  I       +          +   S+   DFI + L K    R  + E L HP+IT
Sbjct: 225 ETLANITSVSYDFDEEF-------FSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWIT 277

Query: 168 SLPEND 173
            +    
Sbjct: 278 PVDNQQ 283

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  113 bits (284), Expect = 9e-28
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 28/192 (14%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  + + H N ++HR+L+  N+LL    K   VK+ DFGL+ E  ++ 
Sbjct: 126 SEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS- 184

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           +    F G+P +++PE+++      D Y   +D+WA G I  I L  G PPF D    R 
Sbjct: 185 EAWHGFAGTPGYLSPEVLKK-----DPYSKPVDIWACGVILYILLV-GYPPFWDEDQHRL 238

Query: 118 LFQIVR-----NPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS- 168
             QI         P        W   +      I   L  NP+ R    + L+ P+I + 
Sbjct: 239 YAQIKAGAYDYPSPE-------WDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNR 291

Query: 169 -LPENDLHLSTV 179
               + +H    
Sbjct: 292 ERVASAIHRQDT 303

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  111 bits (280), Expect = 1e-27
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E+  + +++++++ + +LHEN ++HRDL+  N+L     ++ ++ I DFGLS+   N  
Sbjct: 104 TEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN-- 161

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
               T  G+P ++APE++         Y   +D W++G IT I L  G PPF +   ++ 
Sbjct: 162 GIMSTACGTPGYVAPEVLAQ-----KPYSKAVDCWSIGVITYILLC-GYPPFYEETESKL 215

Query: 118 LFQIVR-----NPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
             +I         P        W   S+   DFI   LEK+P  R    + L HP+I   
Sbjct: 216 FEKIKEGYYEFESPF-------WDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGN 268

Query: 170 PENDLHL 176
                 +
Sbjct: 269 TALHRDI 275

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  110 bits (278), Expect = 1e-27
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 21/176 (11%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
            E   A I+K++++ + + H+ +V HRDL+  N L      D  +K++DFGL+       
Sbjct: 104 RESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG- 162

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
              +T +G+P +++P+++         Y    D W+ G +  + L  G PPF        
Sbjct: 163 KMMRTKVGTPYYVSPQVLE------GLYGPECDEWSAGVMMYVLLC-GYPPFSA-PTDSE 214

Query: 118 LFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           +   +R    G +     +W   S      I   L K+P+ R    + LEH +   
Sbjct: 215 VMLKIRE---GTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEK 267

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  115 bits (290), Expect = 1e-27
 Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 13/169 (7%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E H  F   EI  G+ FL    +I+RDL+  NV+L  +G +KI DFG+ +E        
Sbjct: 440 KEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTT 499

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
           KTF G+P ++APEI+         Y   +D WA G+   E+  G+ PFE       LFQ 
Sbjct: 500 KTFCGTPDYIAPEIIAY-----QPYGKSVDWWAFGVLLYEMLAGQAPFEG-EDEDELFQS 553

Query: 122 VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           +        +  + S+  V      + K+P  R         ++ EH F
Sbjct: 554 IMEHNVAYPK--SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 600

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score =  112 bits (281), Expect = 1e-27
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-- 58
           M E+      ++I++ + + H+  ++HRDL+  N+LL  D  +KI DFG S    N F  
Sbjct: 111 MKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS----NEFTV 166

Query: 59  -DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             K   F G+P + APE+ +   K+ DG    +DVW+LG+    L  G  PF+  +  + 
Sbjct: 167 GGKLDAFCGAPPYAAPELFQ--GKKYDG--PEVDVWSLGVILYTLVSGSLPFDGQN-LKE 221

Query: 118 LFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPENDLH 175
           L + V     G YR   + S    + +   L  NP  R  + ++++         E++L 
Sbjct: 222 LRERVLR---GKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHEEDELK 278

Query: 176 LSTVNCQYKDQELQTMHVEDLAALET--ISEDNIVQELEERHNS 217
                  + + EL     + +  +     S++ I + L +    
Sbjct: 279 ------PFVEPELDISDQKRIDIMVGMGYSQEEIQESLSKMKYD 316

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  114 bits (287), Expect = 2e-27
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 15/172 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   +I++G+  LH+ ++I+RDL+  NVLL  DG V+I D GL+ E      K 
Sbjct: 287 QEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT 346

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MHPTRAL 118
           K + G+P +MAPE++       + YD  +D +ALG+T  E+   + PF         + L
Sbjct: 347 KGYAGTPGFMAPELLLG-----EEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKEL 401

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
            Q V            +S    DF    L+K+PE R          L  HP 
Sbjct: 402 KQRVLEQAVTY--PDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPL 451

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  112 bits (283), Expect = 3e-27
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 17/187 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           SE   +  +++I+  ++  H+  V+HR+L+  N+LL    K   VK+ DFGL+ E     
Sbjct: 108 SEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ 167

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
                F G+P +++PE++R      D Y   +D+WA G I  I L  G PPF D    R 
Sbjct: 168 QAWFGFAGTPGYLSPEVLRK-----DPYGKPVDLWACGVILYILLV-GYPPFWDEDQHRL 221

Query: 118 LFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT--SLPEN 172
             QI        + +  W   +    D I + L  NP  R   +E L+HP+I+  S   +
Sbjct: 222 YQQIKAGAYD--FPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHRSTVAS 279

Query: 173 DLHLSTV 179
            +H    
Sbjct: 280 CMHRQET 286

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  112 bits (281), Expect = 3e-27
 Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 29/182 (15%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E+H  F   EI   + +LHE  +I+RDL+  NVLL  +G +K+ D+G+ +E     D  
Sbjct: 151 PEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT 210

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA---- 117
            TF G+P+++APEI+R      + Y   +D WALG+   E+  G+ PF+ +  +      
Sbjct: 211 STFCGTPNYIAPEILRG-----EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQN 265

Query: 118 ----LFQ-IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR------PYMSELLEH 163
               LFQ I+      P  L      S      +   L K+P+ R         +++  H
Sbjct: 266 TEDYLFQVILEKQIRIPRSL------SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 319

Query: 164 PF 165
           PF
Sbjct: 320 PF 321

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  112 bits (281), Expect = 3e-27
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 19/180 (10%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           MSE  +   +++   G+  +HE+ ++H D++  N++    K   VKI+DFGL+ +     
Sbjct: 146 MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD- 204

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           +  K    +  + APEI+       +      D+WA+G +  + L  G  PF        
Sbjct: 205 EIVKVTTATAEFAAPEIVDR-----EPVGFYTDMWAIGVLGYVLLS-GLSPFAGEDDLET 258

Query: 118 LFQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           L  + R      +      +   S    DFI   L+K P  R  + + LEHP++     N
Sbjct: 259 LQNVKR----CDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSN 314

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  110 bits (277), Expect = 4e-27
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 26/180 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANT 57
           +SE  +  ++K+I+ G+ +LH+N+++H DL+  N+LL      G++KIVDFG+SR+  + 
Sbjct: 128 VSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA 187

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTR 116
             + +  +G+P ++APEI+       D      D+W +G I  + L     PF       
Sbjct: 188 -CELREIMGTPEYLAPEILNY-----DPITTATDMWNIGIIAYMLLT-HTSPFVGEDNQE 240

Query: 117 ALFQIVR-----NPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
               I +     +          +   SQ   DFI   L KNPE RP     L H ++  
Sbjct: 241 TYLNISQVNVDYSEET-------FSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQ 293

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  113 bits (285), Expect = 4e-27
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EI  G+  LH   +++RDL+  N+LL   G ++I D GL+          
Sbjct: 284 PEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTI 342

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF--EDMHPTRA-L 118
           K  +G+  +MAPE+++      + Y    D WALG    E+  G+ PF        R  +
Sbjct: 343 KGRVGTVGYMAPEVVKN-----ERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEV 397

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
            ++V+  P        +S       ++ L K+P  R         E+ EHP 
Sbjct: 398 ERLVKEVPEEYSE--RFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPL 447

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  109 bits (275), Expect = 7e-27
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 32/186 (17%)

Query: 9   ILKEIITGMVFLHEN----------HVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETAN 56
           I + +  G+ +LHE+           + HRD++  NVLL  +    I DFGL+   E   
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGK 185

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-----------GDG 105
           +       +G+  +MAPE++            RID++A+G+   EL            + 
Sbjct: 186 SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEY 245

Query: 106 KPPFEDMHPTRALF---------QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY 156
             PFE+                 +  R      ++         + I EC + + E R  
Sbjct: 246 MLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLS 305

Query: 157 MSELLE 162
              + E
Sbjct: 306 AGCVGE 311

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  113 bits (284), Expect = 7e-27
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL+ + +    K 
Sbjct: 290 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK--KKP 347

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--TRALF 119
              +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF          + 
Sbjct: 348 HASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID 403

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           ++       L    ++S      +   L+++   R         E+ E PF
Sbjct: 404 RMTLTMAVEL--PDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPF 452

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  112 bits (282), Expect = 8e-27
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 17/188 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           MSE      ++++  G+  +HEN+ +H DL+  N++ T  +  E+K++DFGL+       
Sbjct: 252 MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK- 310

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
              K   G+  + APE+               D+W++G ++ I L  G  PF   +    
Sbjct: 311 QSVKVTTGTAEFAAPEVAEG-----KPVGYYTDMWSVGVLSYILLS-GLSPFGGENDDET 364

Query: 118 LFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT--SLPEN 172
           L  +           S +   S+   DFI + L  +P  R  + + LEHP++T  + P  
Sbjct: 365 LRNVKSCDW--NMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGR 422

Query: 173 DLHLSTVN 180
           D  + +  
Sbjct: 423 DSQIPSSR 430

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  109 bits (274), Expect = 1e-26
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT----KDGEVKIVDFGLSRETAN 56
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPT 115
             ++ K   G+P ++APEI+       +      D+W++G IT I L  G  PF      
Sbjct: 171 G-NEFKNIFGTPEFVAPEIVNY-----EPLGLEADMWSIGVITYILLS-GASPFLGDTKQ 223

Query: 116 RALFQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
             L  +        Y      +   S    DFI   L K+P+ R  + + L+HP+I    
Sbjct: 224 ETLANVSA----VNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD 279

Query: 171 END 173
              
Sbjct: 280 TQQ 282

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  108 bits (272), Expect = 2e-26
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 32/186 (17%)

Query: 9   ILKEIITGMVFLHE--------NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR----ETAN 56
           +    ++G+  LH           + HRDL+  N+L+ K+G   I D GL+     +T  
Sbjct: 139 LAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNE 198

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGI----------TAIELGDG 105
                 T +G+  +M PE++               D+++ G+          +   + + 
Sbjct: 199 VDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEY 258

Query: 106 KPPFEDMHPTRALFQIVRN--------PP-PGLYRASNWSQHYVDFIAECLEKNPEHRPY 156
           + P+ D+ P+   ++ +R         P  P  + +    +     + EC   NP  R  
Sbjct: 259 QLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLT 318

Query: 157 MSELLE 162
              + +
Sbjct: 319 ALRVKK 324

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  108 bits (271), Expect = 2e-26
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 24/176 (13%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
            E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG ++  +    + 
Sbjct: 128 DETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 187

Query: 62  K--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           +  +F+G+  +++PE++              D+WALG    +L  G PPF   +    +F
Sbjct: 188 RANSFVGTAQYVSPELLTE-----KSACKSSDLWALGCIIYQLVAGLPPFRAGNEYL-IF 241

Query: 120 Q-IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHRP------YMSELLEHPF 165
           Q I++     P              D + + L  +   R           L  HPF
Sbjct: 242 QKIIKLEYDFPEKF------FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPF 291

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score =  110 bits (277), Expect = 2e-26
 Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 20/219 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E+    + ++I++G+ + H + V+HRDL+  NVLL      KI DFGLS    N    
Sbjct: 113 LDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSD 168

Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  GSP++ APE++    +   G    +D+W+ G+    L  G  PF+D H    
Sbjct: 169 GEFLRTSCGSPNYAAPEVIS--GRLYAG--PEVDIWSSGVILYALLCGTLPFDDDH-VPT 223

Query: 118 LFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPENDLH 175
           LF+ + +   G++    + +   +  +   L+ +P  R  + ++ EH  F   LP+   +
Sbjct: 224 LFKKICD---GIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPK---Y 277

Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEER 214
           L   +  Y    +    ++++      SE+ ++  L  R
Sbjct: 278 LFPEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNR 316

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  109 bits (275), Expect = 3e-26
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 22/174 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           SE    F   EI++ + +LH    V++RDL+  N++L KDG +KI DFGL +E       
Sbjct: 246 SEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 305

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KTF G+P ++APE++       + Y   +D W LG+   E+  G+ PF +      LF+
Sbjct: 306 MKTFCGTPEYLAPEVLED-----NDYGRAVDWWGLGVVMYEMMCGRLPFYN-QDHEKLFE 359

Query: 121 -IVRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
            I+      P  L             ++  L+K+P+ R         E+++H F
Sbjct: 360 LILMEEIRFPRTL------GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF 407

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  108 bits (271), Expect = 5e-26
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 23/200 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           ++E      +K+I  G+  +H+ +++H DL+  N+L       ++KI+DFGL+R      
Sbjct: 184 LTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR- 242

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTRA 117
           +K K   G+P ++APE++       D      D+W++G I  + L  G  PF   +    
Sbjct: 243 EKLKVNFGTPEFLAPEVVNY-----DFVSFPTDMWSVGVIAYMLLS-GLSPFLGDNDAET 296

Query: 118 LFQIVRNPPPGLY--RASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
           L  I+       +      +   S+   +FI++ L K    R   SE L+HP+++    +
Sbjct: 297 LNNILA----CRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDHKLH 352

Query: 173 DLHLSTVNCQYKDQELQTMH 192
               S ++ Q K        
Sbjct: 353 ----SRLSAQKKKNRGSDAQ 368

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score =  106 bits (266), Expect = 1e-25
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 21/182 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFD 59
           + E        +++  +   H   V+HRD++  N+L+  + G  K++DFG      +   
Sbjct: 136 LGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDE-- 193

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRAL 118
               F G+  +  PE +         Y      VW+LGI   ++  G  PFE        
Sbjct: 194 PYTDFDGTRVYSPPEWISRH-----QYHALPATVWSLGILLYDMVCGDIPFERDQ----- 243

Query: 119 FQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPENDLHL 176
            +I+              S      I  CL   P  RP + E+L  P   T   +  L+ 
Sbjct: 244 -EILE----AELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAEDVPLNP 298

Query: 177 ST 178
           S 
Sbjct: 299 SK 300

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score =  105 bits (265), Expect = 1e-25
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 20/167 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFD 59
           + E+       +++  +   H   V+HRD++  N+L+    GE+K++DFG      +T  
Sbjct: 146 LQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV- 204

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHPTRAL 118
               F G+  +  PE +R  H+    Y  R   VW+LGI   ++  G  PFE        
Sbjct: 205 -YTDFDGTRVYSPPEWIR-YHR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE----- 253

Query: 119 FQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP 164
            +I+R    G        S      I  CL   P  RP   E+  HP
Sbjct: 254 -EIIR----GQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHP 295

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score =  106 bits (266), Expect = 1e-25
 Identities = 43/226 (19%), Positives = 97/226 (42%), Gaps = 25/226 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E   ++I +++++ + +L    +IHRD++  N+++ +D  +K++DFG +       ++
Sbjct: 127 LDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSA----AYLER 182

Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYD-NRIDVWALGITAIELGDGKPPFEDMHPTR 116
                TF G+  + APE++  G+     Y    +++W+LG+T   L   + PF +     
Sbjct: 183 GKLFYTFCGTIEYCAPEVLM-GNP----YRGPELEMWSLGVTLYTLVFEENPFCE----- 232

Query: 117 ALFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH 175
            L + V              S+  +  ++  L+  PE R  + +L+  P++T       +
Sbjct: 233 -LEETVE----AAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPVNLADY 287

Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHY 221
                 +    E   +       +   S  ++ Q  E      +H+
Sbjct: 288 TWEEVFRVNKPESGVLS-AASLEMGNRSLSDVAQAQELCGGEGHHH 332

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  106 bits (265), Expect = 2e-25
 Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 38/189 (20%)

Query: 9   ILKEIITGMVFLHENH--------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--- 57
           +     +G+  LH           + HRDL+  N+L+ K+G   I D GL+    +    
Sbjct: 144 LALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT 203

Query: 58  -FDKKKTFLGSPSWMAPEIMR----CGHKEVDGYDNRIDVWALGI----------TAIEL 102
                   +G+  +MAPE++       H E      R D++A+G+               
Sbjct: 204 IDIAPNHRVGTKRYMAPEVLDDSINMKHFE---SFKRADIYAMGLVFWEIARRCSIGGIH 260

Query: 103 GDGKPPFEDMHPTRALFQIVRN--------PP-PGLYRASNWSQHYVDFIAECLEKNPEH 153
            D + P+ D+ P+    + +R         P  P  +++    +     + EC   N   
Sbjct: 261 EDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAA 320

Query: 154 RPYMSELLE 162
           R     + +
Sbjct: 321 RLTALRIKK 329

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score =  104 bits (261), Expect = 5e-25
 Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 14/227 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+        +
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161

Query: 61  K--KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRA 117
           +      G+  ++APE+++   +E       +DVW+ GI    +  G+ P++      + 
Sbjct: 162 RLLNKMCGTLPYVAPELLK--RREFHAE--PVDVWSCGIVLTAMLAGELPWDQPSDSCQE 217

Query: 118 LFQIVRN---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
                       P            +  + + L +NP  R  + ++ +  +     +   
Sbjct: 218 YSDWKEKKTYLNPWKK----IDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLKKGA 273

Query: 175 HLSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHY 221
               V      +          + L+    ++  +      + ++H+
Sbjct: 274 KRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASRTPGSGWSKEHHH 320

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =  103 bits (259), Expect = 5e-25
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E     + ++I++ + + H + V+HRDL+  NVLL      KI DFGLS    N    
Sbjct: 108 VEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSD 163

Query: 61  K---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
               +T  GSP++ APE++    +   G    +D+W+ G+    L  G  PF+D H    
Sbjct: 164 GEFLRTSCGSPNYAAPEVIS--GRLYAG--PEVDIWSCGVILYALLCGTLPFDDEH-VPT 218

Query: 118 LFQIVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           LF+ +R    G++    + ++     +   L+ +P  R  + ++ EH +  
Sbjct: 219 LFKKIRG---GVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFK 266

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score =  103 bits (260), Expect = 5e-25
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFD 59
           +S         +I+ G+   H+  ++HRD++  N+L+  +  +KI DFG+++  +  +  
Sbjct: 108 LSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT 167

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           +    LG+  + +PE  +   +  D      D++++GI   E+  G+PPF          
Sbjct: 168 QTNHVLGTVQYFSPEQAK--GEATDE---CTDIYSIGIVLYEMLVGEPPFNGETAVSIAI 222

Query: 120 QIVRNPPPGLYRASN--WSQHYVDFIAECLEKNPEHRP 155
           + +++  P +         Q   + I    EK+  +R 
Sbjct: 223 KHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRY 260

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score =  102 bits (257), Expect = 1e-24
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R     VD    R DV++LG    E+  G+PPF    P   
Sbjct: 173 VTQTAAVIGTAQYLSPEQAR--GDSVDA---RSDVYSLGCVLYEVLTGEPPFTGDSPVSV 227

Query: 118 LFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRP 155
            +Q VR  P     R    S      + + L KNPE+R 
Sbjct: 228 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRY 266

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score =  102 bits (257), Expect = 1e-24
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-ETANTFD 59
           ++      I+++I + +   H     HRD++  N+L++ D    +VDFG++   T     
Sbjct: 131 LAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLT 190

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           +    +G+  +MAPE  R           R D++AL     E   G PP++    +    
Sbjct: 191 QLGNTVGTLYYMAPE--RFSESHATY---RADIYALTCVLYECLTGSPPYQGDQLSVMGA 245

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
            I +  P            +   IA  + KNPE R 
Sbjct: 246 HINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRY 281

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score =  101 bits (254), Expect = 2e-24
 Identities = 36/182 (19%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+        +
Sbjct: 102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161

Query: 61  K--KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRA 117
           +      G+  ++APE+++   +E       +DVW+ GI    +  G+ P++      + 
Sbjct: 162 RLLNKMCGTLPYVAPELLK--RREFHA--EPVDVWSCGIVLTAMLAGELPWDQPSDSCQE 217

Query: 118 LFQIVRNPPPGLYRASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPEND 173
                          + W       +  + + L +NP  R  + ++ +   +   L +  
Sbjct: 218 YSDWKE----KKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLKKGA 273

Query: 174 LH 175
             
Sbjct: 274 KR 275

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  104 bits (260), Expect = 3e-24
 Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFDK 60
            E+   F L E++  +  +H+ H +HRD++  N+L+  +G +++ DFG   +   +   +
Sbjct: 173 PEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQ 232

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               +G+P +++PEI++        Y    D W+LG+   E+  G+ PF          +
Sbjct: 233 SSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGK 292

Query: 121 IVRNPPPGLY--RASNWSQHYVDFIAECLEKNPEHR---PYMSELLEHPF 165
           I+ +     +  + ++ S++  D I   L  + EHR     + +  +HPF
Sbjct: 293 IMNHKERFQFPTQVTDVSENAKDLI-RRLICSREHRLGQNGIEDFKKHPF 341

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  102 bits (257), Expect = 3e-24
 Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 22/172 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       + 
Sbjct: 139 SEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK---GRT 195

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            T  G+P  +APEI+        GY+  +D WALG+   E+  G PPF    P +   +I
Sbjct: 196 WTLCGTPEALAPEIILS-----KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKI 250

Query: 122 VRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           V      P         S    D +   L+ +   R       ++++  H +
Sbjct: 251 VSGKVRFPSHF------SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKW 296

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  101 bits (255), Expect = 4e-24
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 22/172 (12%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
                 F   E+   + +LH   +I+RDL+  N+LL K+G +KI DFG ++      D  
Sbjct: 104 PNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP---DVT 160

Query: 62  KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQI 121
            T  G+P ++APE++         Y+  ID W+ GI   E+  G  PF D +  +   +I
Sbjct: 161 YTLCGTPDYIAPEVVST-----KPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKI 215

Query: 122 VRNP---PPGLYRASNWSQHYVDFIAECLEKNPEHR-----PYMSELLEHPF 165
           +      PP        ++   D ++  + ++   R         ++  HP+
Sbjct: 216 LNAELRFPPFF------NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPW 261

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score =  101 bits (254), Expect = 7e-24
 Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 43/208 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S+ HI + + + +  +  LH ++VIHRDL+ SN+L+  + ++K+ DFGL+R    +   
Sbjct: 109 LSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAAD 168

Query: 61  KKTFLGSPSWM----------APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF- 109
                G  S M          APE+M    K    Y   +DVW+ G    EL   +P F 
Sbjct: 169 NSEPTGQQSGMVEFVATRWYRAPEVMLTSAK----YSRAMDVWSCGCILAELFLRRPIFP 224

Query: 110 -ED-MHPTRALFQIVRNPPP-------------------GLYRASNWSQHY-------VD 141
             D  H    +F I+  P                      +Y A+   + +       +D
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGID 284

Query: 142 FIAECLEKNPEHRPYMSELLEHPFITSL 169
            +   L  +P  R    E LEHP++ + 
Sbjct: 285 LLQRMLVFDPAKRITAKEALEHPYLQTY 312

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  102 bits (255), Expect = 1e-23
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFDK 60
             +   F L EI+  +  +H    +HRD++  N+LL + G +++ DFG   +  A+   +
Sbjct: 160 PAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVR 219

Query: 61  KKTFLGSPSWMAPEI-MRCGHKEVDG-YDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
               +G+P +++PEI    G     G Y    D WALG+ A E+  G+ PF         
Sbjct: 220 SLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETY 279

Query: 119 FQIV--RNPPPGLYRASNWSQHYVDFIAECLEKNPEHR---PYMSELLEHPF 165
            +IV  +             +   DFI + L   PE R       +   HPF
Sbjct: 280 GKIVHYKEHLSLPLVDEGVPEEARDFI-QRLLCPPETRLGRGGAGDFRTHPF 330

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score =  103 bits (257), Expect = 2e-23
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 20/155 (12%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +        L EI+  + +LH   +++ DL+  N++LT++  +K++D G         + 
Sbjct: 179 LPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEEQ-LKLIDLGAVS----RINS 233

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
                G+P + APEI+R       G     D++ +G T   L    P     +       
Sbjct: 234 FGYLYGTPGFQAPEIVR------TGPTVATDIYTVGRTLAALTLDLPTRNGRYV-----D 282

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
            +    P L         Y   +   ++ +P  R 
Sbjct: 283 GLPEDDPVLKT----YDSYGRLLRRAIDPDPRQRF 313

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  100 bits (251), Expect = 3e-23
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           ++ +   GM +L     IHRDL   N L+T+   +KI DFG+SRE A+        L   
Sbjct: 218 MVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQV 277

Query: 68  P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN- 124
           P  W APE +  G      Y +  DVW+ GI   E    G  P+ ++   +    + +  
Sbjct: 278 PVKWTAPEALNYGR-----YSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGG 332

Query: 125 --PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
             P P               + +C    P  RP  S + +
Sbjct: 333 RLPCP-----ELCPDAVFRLMEQCWAYEPGQRPSFSTIYQ 367

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 98.5 bits (246), Expect = 3e-23
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 46/200 (23%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTF 58
           +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG         
Sbjct: 115 TEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF-------- 166

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFEDMHPTR- 116
                        A E         + YD   D+W+LG I  I L  G PPF   H    
Sbjct: 167 -------------AKETTG------EKYDKSCDMWSLGVIMYILLC-GYPPFYSNHGLAI 206

Query: 117 --ALFQIVRNPPPGLYR--ASNW---SQHYVDFIAECLEKNPEHRPYMSELLEHPFIT-- 167
              +   +R    G Y      W   S+     I   L+  P  R  ++E + HP+I   
Sbjct: 207 SPGMKTRIRM---GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS 263

Query: 168 -SLPENDLHLSTVNCQYKDQ 186
             +P+  LH S V  + K++
Sbjct: 264 TKVPQTPLHTSRVLKEDKER 283

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 97.2 bits (243), Expect = 1e-22
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 58/212 (27%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  +  I  + +  + F H+++ IHRD++  N+L+TK   +K+ DFG +R        
Sbjct: 99  VPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARL------- 151

Query: 61  KKTFLGSPS----------WM-APEI-MRCGHKEVDGYDNRIDVWALG-ITAIELGDGKP 107
               L  PS          W  +PE+ +         Y   +DVWA+G + A EL  G P
Sbjct: 152 ----LTGPSDYYDDEVATRWYRSPELLVGDTQ-----YGPPVDVWAIGCVFA-ELLSGVP 201

Query: 108 PF---EDMH-----------PTRALFQIVRNPP-------PGLYRASNWSQHY------- 139
            +    D+                  Q+            P           +       
Sbjct: 202 LWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPA 261

Query: 140 VDFIAECLEKNPEHRPYMSELLEHPFITSLPE 171
           +  +  CL  +P  R    +LL HP+  ++ E
Sbjct: 262 LGLLKGCLHMDPTERLTCEQLLHHPYFENIRE 293

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 7/169 (4%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFDK 60
            E+   F   E++  +  +H    IHRD++  N+LL K G +K+ DFG   +       +
Sbjct: 166 PEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR 225

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T +G+P +++PE+++        Y    D W++G+   E+  G  PF          +
Sbjct: 226 CDTAVGTPDYISPEVLK-SQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSK 284

Query: 121 IVRNPPPGLYRASNW-SQHYVDFIAECLEKNPEHR---PYMSELLEHPF 165
           I+ +     +   N  S+   + I   L  + E R     + E+  H F
Sbjct: 285 IMNHKNSLTFPDDNDISKEAKNLICAFL-TDREVRLGRNGVEEIKRHLF 332

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 58/211 (27%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  Q +   L +II G+ F H +++IHRD++  N+L+++ G VK+ DFG +R        
Sbjct: 121 LDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFART------- 173

Query: 61  KKTFLGSPS----------WM-APEI-MRCGHKEVDGYDNRIDVWALG-ITAIELGDGKP 107
               L +P           W  APE+ +         Y   +DVWA+G +   E+  G+P
Sbjct: 174 ----LAAPGEVYDDEVATRWYRAPELLVGDVK-----YGKAVDVWAIGCLVT-EMFMGEP 223

Query: 108 PF---EDMH-----------PTRALFQIVRNPP-------PGLYRASNWSQHY------- 139
            F    D+                  ++    P       P +       + Y       
Sbjct: 224 LFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVV 283

Query: 140 VDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
           +D   +CL  +P+ RP+ +ELL H F     
Sbjct: 284 IDLAKKCLHIDPDKRPFCAELLHHDFFQMDG 314

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 36/199 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S QHI + +  I+ G+  LHE  V+HRDL   N+LL  + ++ I DF L+RE     D 
Sbjct: 131 ISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTA--DA 188

Query: 61  KKTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH------ 113
            KT   +  W  APE++         +   +D+W+ G    E+ + K  F          
Sbjct: 189 NKTHYVTHRWYRAPELVMQFKG----FTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN 244

Query: 114 --------PTRALFQIVRNP--------PPGLYRASNWSQHY-------VDFIAECLEKN 150
                   P      +  +P              A  W+          +D IA+ LE N
Sbjct: 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFN 304

Query: 151 PEHRPYMSELLEHPFITSL 169
           P+ R    + L HP+  SL
Sbjct: 305 PQRRISTEQALRHPYFESL 323

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 96.6 bits (240), Expect = 4e-22
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 27/186 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-----------KDGEVKIVDFG 49
           M +  +      ++  +  +H+  +IH D++  N +L                + ++D G
Sbjct: 169 MPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLG 228

Query: 50  LSRETANTFDKK---KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGK 106
            S +    F K         +  +   E++         ++ +ID + +  T   +  G 
Sbjct: 229 QSIDM-KLFPKGTIFTAKCETSGFQCVEMLSN-----KPWNYQIDYFGVAATVYCMLFGT 282

Query: 107 PPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
                                 L     W+    +F    L     H     +LL     
Sbjct: 283 YMKVKNEGGECKP---EGLFRRLPHLDMWN----EFFHVMLNIPDCHHLPSLDLLRQKLK 335

Query: 167 TSLPEN 172
               ++
Sbjct: 336 KVFQQH 341

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 96.7 bits (241), Expect = 4e-22
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRETANTF 58
            SE    F  +++++G+ + H   + HRDL+  N LL  +    +KI DFG S+ +    
Sbjct: 113 FSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSS--VL 170

Query: 59  DKK-KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             + K+ +G+P+++APE++    +E DG     DVW+ G+T   +  G  PFED    R 
Sbjct: 171 HSQPKSTVGTPAYIAPEVLL--RQEYDGK--IADVWSCGVTLYVMLVGAYPFEDPEEPRD 226

Query: 118 LFQIVRNPPPGLYR--ASNW-SQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPEND 173
             + ++      Y        S      I+     +P  R  + E+  H  F+ +LP + 
Sbjct: 227 YRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLKNLPADL 286

Query: 174 LHLSTVNCQYKDQELQTMHVED 195
           ++ S    Q+++ E     ++ 
Sbjct: 287 MNESNTGSQFQEPEQPMQSLDT 308

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 41/200 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I F++ +++ G+ ++H   +IHRDL+  N+ + +D E+KI+DFGL+R      D 
Sbjct: 125 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLAR----QADS 180

Query: 61  KKTFLGSPSWM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMH--- 113
           + T      W  APE++    +    Y   +D+W++G    E+  GK  F   + +    
Sbjct: 181 EMTGYVVTRWYRAPEVILNWMR----YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLK 236

Query: 114 --------PTRALFQIVRNP---------PPGLYRASNWSQHY-------VDFIAECLEK 149
                   P     Q +++          P       +++          V+ + + L  
Sbjct: 237 EIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE--LEKKDFASILTNASPLAVNLLEKMLVL 294

Query: 150 NPEHRPYMSELLEHPFITSL 169
           + E R    E L HP+  SL
Sbjct: 295 DAEQRVTAGEALAHPYFESL 314

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 95.4 bits (238), Expect = 9e-22
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 37/198 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE+ I +++ +++ G+ ++H   V+HRDL+  N+ + +D E+KI+DFGL+R      D 
Sbjct: 123 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLAR----HADA 178

Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTR 116
           + T      W  APE++         Y+  +D+W++G    E+  GK  F   + +    
Sbjct: 179 EMTGYVVTRWYRAPEVILSWMH----YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLT 234

Query: 117 ALFQIVRNPPP------------------GLYRASNWSQHY-------VDFIAECLEKNP 151
            + ++   P                          +++Q +        D + + LE + 
Sbjct: 235 QILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDV 294

Query: 152 EHRPYMSELLEHPFITSL 169
           + R   ++ L HPF    
Sbjct: 295 DKRLTAAQALTHPFFEPF 312

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 37/198 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R TA+    
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEM-- 186

Query: 61  KKTFLGSPSW-MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF---EDMHPTR 116
             T   +  W  APEIM         Y+  +D+W++G    EL  G+  F   + +   +
Sbjct: 187 --TGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLK 240

Query: 117 ALFQIVRNPPP------------------GLYRASNWSQHY-------VDFIAECLEKNP 151
            + ++V  P                          N++  +       VD + + L  + 
Sbjct: 241 LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDS 300

Query: 152 EHRPYMSELLEHPFITSL 169
           + R   ++ L H +    
Sbjct: 301 DKRITAAQALAHAYFAQY 318

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 91.9 bits (229), Expect = 5e-21
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 31/178 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
              ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K     P
Sbjct: 122 FSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL----P 177

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVR--- 123
             W APE +R        +  + DVW+ GI   E+   G+ P+  +     + ++ +   
Sbjct: 178 VKWTAPEALREKK-----FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK 232

Query: 124 -----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
                  PP +Y          + +  C   +   RP   +L E   +  +  ++LHL
Sbjct: 233 MDAPDGCPPAVY----------EVMKNCWHLDAAMRPSFLQLREQ--LEHIKTHELHL 278

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 92.7 bits (231), Expect = 8e-21
 Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 49/207 (23%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      D 
Sbjct: 125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184

Query: 61  KKTFLGSPSWM----------APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
                    ++          APEIM         Y   ID+W++G    E+   +P F 
Sbjct: 185 T-------GFLTEYVATRWYRAPEIMLNSKG----YTKSIDIWSVGCILAEMLSNRPIFP 233

Query: 111 DMH--------------PTRALFQIVRNPPPGLYRAS-------NWSQHY-------VDF 142
             H              P++     + N     Y  S        W++ +       +D 
Sbjct: 234 GKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDL 293

Query: 143 IAECLEKNPEHRPYMSELLEHPFITSL 169
           + + L  NP  R  + + L HP++   
Sbjct: 294 LDKMLTFNPHKRIEVEQALAHPYLEQY 320

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 93.2 bits (232), Expect = 9e-21
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 71/235 (30%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +   H  +++ ++I  + +LH   ++HRD++ SN+LL  +  VK+ DFGLSR   N    
Sbjct: 106 LEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRV 165

Query: 61  KKTFLGSPSWM---------------------APEIMRCGHKEVDGYDNRIDVWALG-IT 98
                 S +                       APEI+  G  +   Y   ID+W+LG I 
Sbjct: 166 TNNIPLSINENTENFDDDQPILTDYVATRWYRAPEIL-LGSTK---YTKGIDMWSLGCIL 221

Query: 99  AIELGDGKPPF---------------------EDM-----------------------HP 114
             E+  GKP F                     ED+                         
Sbjct: 222 G-EILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSN 280

Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL 169
            R +F   +N    +   ++ ++  +D + + L+ NP  R   ++ L+HPF++  
Sbjct: 281 KRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIF 335

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 31/178 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
              ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D  K     P
Sbjct: 294 FSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL----P 349

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRALFQIVRN-- 124
             W APE +R        +  + DVW+ GI   E+   G+ P+  +     + ++ +   
Sbjct: 350 VKWTAPEALREKK-----FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK 404

Query: 125 ---P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
              P   PP +Y          D +  C   +   RP   +L E   +  +  ++LHL
Sbjct: 405 MDAPDGCPPAVY----------DVMKNCWHLDAATRPTFLQLRE--QLEHIRTHELHL 450

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 93.4 bits (232), Expect = 2e-20
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 25/164 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +  +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R   +     +     P
Sbjct: 368 MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 427

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN-- 124
             W APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R   
Sbjct: 428 IKWTAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 482

Query: 125 ---P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              P   P  L+          D + +C  K PE RP    L  
Sbjct: 483 MPCPPECPESLH----------DLMCQCWRKEPEERPTFEYLQA 516

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 53/214 (24%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++  ++   L +++ G+ + H   V+HRDL+  N+L+ + GE+K+ DFGL+R        
Sbjct: 97  INMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLAR-------- 148

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
                  P+          W   P+I+  G  +   Y  +ID+W +G    E+  G+P F
Sbjct: 149 ---AKSIPTKTYDNEVVTLWYRPPDIL-LGSTD---YSTQIDMWGVGCIFYEMATGRPLF 201

Query: 110 --------------------EDMHPTRALFQIVRNPPPGLYRASNWSQHY-------VDF 142
                               E+  P     +  +      YRA     H         D 
Sbjct: 202 PGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADL 261

Query: 143 IAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
           + + L+    +R    + ++HPF  SL E    L
Sbjct: 262 LTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKL 295

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 25/164 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +  +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R   +     +     P
Sbjct: 285 MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 344

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN-- 124
             W APE    G      +  + DVW+ GI   EL   G+ P+  M     L Q+ R   
Sbjct: 345 IKWTAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 399

Query: 125 ---P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
              P   P  L+          D + +C  K PE RP    L  
Sbjct: 400 MPCPPECPESLH----------DLMCQCWRKEPEERPTFEYLQA 433

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 42/196 (21%)

Query: 9   ILKEIITGMVFLHENH---------VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           +   +  G+ +LH            + HRDL   NVL+  DG   I DFGLS        
Sbjct: 116 LAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRL 175

Query: 60  KK--------KTFLGSPSWMAPEIMRCG--HKEVDGYDNRIDVWALGI---------TAI 100
            +         + +G+  +MAPE++      ++ +    ++D++ALG+         T +
Sbjct: 176 VRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDL 235

Query: 101 ELGDG----KPPFEDMHPTRALFQIVRNP----------PPGLYRASNWSQHYVDFIAEC 146
             G+     +  F+        F+ ++            P      S   +   + I +C
Sbjct: 236 FPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDC 295

Query: 147 LEKNPEHRPYMSELLE 162
            +++ E R       E
Sbjct: 296 WDQDAEARLTAQXAEE 311

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 35/199 (17%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFDK 60
            E+H    + +++ G+ ++H  +V+HRDL+ +N+ + T+D  +KI DFGL+R     +  
Sbjct: 118 LEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSH 177

Query: 61  KKTFLGSPS--WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---- 113
           K          W  +P ++   +     Y   ID+WA G    E+  GK  F   H    
Sbjct: 178 KGHLSEGLVTKWYRSPRLLLSPNN----YTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQ 233

Query: 114 ----------PTRALFQIVRNPPP------GLYRASNWSQHY-------VDFIAECLEKN 150
                           Q + +  P              +Q         VDF+ + L  +
Sbjct: 234 MQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFS 293

Query: 151 PEHRPYMSELLEHPFITSL 169
           P  R    E L HP+++  
Sbjct: 294 PMDRLTAEEALSHPYMSIY 312

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 47/261 (18%), Positives = 102/261 (39%), Gaps = 53/261 (20%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R    +F  
Sbjct: 124 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 183

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----------- 109
              ++ +  + APE++         Y   +D+W++G    E+  G   F           
Sbjct: 184 TP-YVVTRYYRAPEVILGMG-----YKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNK 237

Query: 110 ----------EDM----------------HPTRALFQIVRN--PPPGLYRASNWSQHYVD 141
                     E M                +   +  ++  +   P         +    D
Sbjct: 238 VIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARD 297

Query: 142 FIAECLEKNPEHRPYMSELLEHPFITSL-PENDLHLSTVNCQYKDQELQTMHVEDLAALE 200
            +++ L  +   R  + E L+HP+I      ++          K  + +   +E+   L 
Sbjct: 298 LLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKIPDKQLDEREHTIEEWKEL- 356

Query: 201 TISEDNIVQELEERHNSKNHY 221
                 I +E+ +  +  +H+
Sbjct: 357 ------IYKEVMDLEHHHHHH 371

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 91.8 bits (228), Expect = 4e-20
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 25/165 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +  +I + M +L + + IHR+L   N L+ ++  VK+ DFGLSR               P
Sbjct: 323 MATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 382

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRALFQIVRN-- 124
             W APE +         +  + DVWA G+   E+   G  P+  +  ++    + ++  
Sbjct: 383 IKWTAPESLAYNK-----FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR 437

Query: 125 ---P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              P   P  +Y          + +  C + NP  RP  +E+ + 
Sbjct: 438 MERPEGCPEKVY----------ELMRACWQWNPSDRPSFAEIHQA 472

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 89.6 bits (223), Expect = 4e-20
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 42/200 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++++ + G+ FLH N ++HRDL+  N+L+T  G VK+ DFGL+R     +  
Sbjct: 117 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLAR----IYSY 172

Query: 61  KKTFLGSPS----WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPF---ED 111
           +     +P     W  APE++         Y   +D+W++G I A E+   KP F    +
Sbjct: 173 QMAL--TPVVVTLWYRAPEVL-LQST----YATPVDMWSVGCIFA-EMFRRKPLFCGNSE 224

Query: 112 MHPTRALFQIVRNPP----PGL----------YRASNWSQHY-------VDFIAECLEKN 150
                 +F ++  PP    P                                + E L  N
Sbjct: 225 ADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFN 284

Query: 151 PEHRPYMSELLEHPFITSLP 170
           P  R      L+H ++    
Sbjct: 285 PHKRISAFRALQHSYLHKDE 304

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I +GM +L +   +HRDL   N+L+  +   K+ DFGL R   +  +   T  G  
Sbjct: 152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGK 211

Query: 69  S---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVR- 123
               W +PE +         + +  DVW+ GI   E+   G+ P+ +M     +  +   
Sbjct: 212 IPIRWTSPEAIAYRK-----FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG 266

Query: 124 -------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
                  + P  LY            + +C +K+  +RP   +++    +  L  N   L
Sbjct: 267 YRLPPPMDCPAALY----------QLMLDCWQKDRNNRPKFEQIVS--ILDKLIRNPGSL 314

Query: 177 STVN--CQYKDQELQTMHVEDLAALETISE 204
             +          L      D+    T  +
Sbjct: 315 KIITSAAARPSNLLLDQSNVDITTFRTTGD 344

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 89.2 bits (222), Expect = 8e-20
 Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 53/208 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + +  I   L +++ G+   H++ ++HRDL+  N+L+  DG +K+ DFGL+R        
Sbjct: 116 LQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR-------- 167

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
                G P           W  AP+++  G K+   Y   +D+W++G    E+  GKP F
Sbjct: 168 ---AFGIPVRSYTHEVVTLWYRAPDVL-MGSKK---YSTSVDIWSIGCIFAEMITGKPLF 220

Query: 110 --------------------EDMHPTRALFQIVRNPPPGLYRASNWSQHY-------VDF 142
                                   P      + +     ++    WS          +D 
Sbjct: 221 PGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDL 280

Query: 143 IAECLEKNPEHRPYMSELLEHPFITSLP 170
           ++  L  +P  R    + + HP+   L 
Sbjct: 281 LSNMLCFDPNKRISARDAMNHPYFKDLD 308

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 89.2 bits (222), Expect = 9e-20
 Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 43/221 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++ +++ G+ FLH + V+HRDL+  N+L+T  G++K+ DFGL+R     +  
Sbjct: 117 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR----IYSF 172

Query: 61  KKTFLGSPS----WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPF---ED 111
           +     +      W  APE++         Y   +D+W++G I A E+   KP F    D
Sbjct: 173 QMAL--TSVVVTLWYRAPEVL-LQSS----YATPVDLWSVGCIFA-EMFRRKPLFRGSSD 224

Query: 112 MHPTRALFQIVRNPP----PGL----------YRASNWSQHY-------VDFIAECLEKN 150
           +     +  ++  P     P              A    +          D + +CL  N
Sbjct: 225 VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFN 284

Query: 151 PEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKD-QELQT 190
           P  R      L HP+   L     +L +     ++  EL T
Sbjct: 285 PAKRISAYSALSHPYFQDLERCKENLDSHLPPSQNTSELNT 325

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 27/166 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ I  GM +L   + +HRDL   N+L+  +   K+ DFGLSR   +  +   T  G  
Sbjct: 152 MLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGK 211

Query: 69  S---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVR- 123
               W APE +         + +  DVW+ GI   E+   G+ P+ ++     +  I   
Sbjct: 212 IPIRWTAPEAISYRK-----FTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDG 266

Query: 124 -------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                  + P  +Y            + +C ++    RP  ++++ 
Sbjct: 267 FRLPTPMDCPSAIY----------QLMMQCWQQERARRPKFADIVS 302

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 27/166 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +L+ +  GM +L +   +HRDL   NVL+  +   K+ DFGLSR   +  D   T  G  
Sbjct: 156 MLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGK 215

Query: 69  S---WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVR- 123
               W APE +         + +  DVW+ G+   E+   G+ P+ +M     +  +   
Sbjct: 216 IPIRWTAPEAIAFRT-----FSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG 270

Query: 124 -------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                    P  L+            + +C  K+   RP  S+++ 
Sbjct: 271 YRLPAPMGCPHALH----------QLMLDCWHKDRAQRPRFSQIVS 306

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
              ++  GM +L     IHRDL   N+LL     VKI DFGL R      D         
Sbjct: 126 YAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRK 185

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P +W APE ++        + +  D W  G+T  E+   G+ P+  ++ ++ L +I + 
Sbjct: 186 VPFAWCAPESLKTRT-----FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKE 240

Query: 125 ------P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                 P   P  +Y          + + +C    PE RP    L +
Sbjct: 241 GERLPRPEDCPQDIY----------NVMVQCWAHKPEDRPTFVALRD 277

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 45/208 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R TA T   
Sbjct: 161 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFM 219

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF----------- 109
              ++ +  + APE++         Y   +D+W++G    E+   K  F           
Sbjct: 220 MTPYVVTRYYRAPEVILGMG-----YKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNK 274

Query: 110 ----------EDM----------------HPTRALFQIVRN--PPPGLYRASNWSQHYVD 141
                     E M                +      ++  +   P         +    D
Sbjct: 275 VIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARD 334

Query: 142 FIAECLEKNPEHRPYMSELLEHPFITSL 169
            +++ L  +P  R  + + L+HP+I   
Sbjct: 335 LLSKMLVIDPAKRISVDDALQHPYINVW 362

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 31/179 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           +  ++  GM FL  +  IHRDL   N L+ +D  VK+ DFG++R   +         G+ 
Sbjct: 109 MCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSV--GTK 166

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P  W APE+          Y ++ DVWA GI   E+   GK P++    +  + ++ + 
Sbjct: 167 FPVKWSAPEVFHYFK-----YSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQG 221

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH 175
                P      +Y            +  C  + PE RP   +LL    I  L E D H
Sbjct: 222 HRLYRPHLASDTIY----------QIMYSCWHELPEKRPTFQQLLS--SIEPLREKDKH 268

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 86.1 bits (214), Expect = 5e-19
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 25/165 (15%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
           +  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR               P
Sbjct: 116 MATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVR--- 123
             W APE +         +  + DVWA G+   E+   G  P+  +  ++    + +   
Sbjct: 176 IKWTAPESLAYNK-----FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR 230

Query: 124 -----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                  P  +Y          + +  C + NP  RP  +E+ + 
Sbjct: 231 MERPEGCPEKVY----------ELMRACWQWNPSDRPSFAEIHQA 265

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 85.3 bits (212), Expect = 8e-19
 Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 41/192 (21%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           +  +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R   +     +   G+ 
Sbjct: 114 MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTARE--GAK 171

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P  W APE +  G      +  + DVW+ GI   E+   G+ P+  M     +  + R 
Sbjct: 172 FPIKWTAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG 226

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH--PFITSLPENDL 174
                P   P  LY            +  C ++ PE RP    L      F T+  E   
Sbjct: 227 YRMVRPDNCPEELY----------QLMRLCWKERPEDRPTFDYLRSVLEDFFTA-TEG-- 273

Query: 175 HLSTVNCQYKDQ 186
                  QY+ Q
Sbjct: 274 -------QYQPQ 278

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 29/166 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           +  ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R   +      T  G+ 
Sbjct: 109 MCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST--GTK 166

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVR- 123
            P  W +PE+          Y ++ DVW+ G+   E+  +GK P+E+   +  +  I   
Sbjct: 167 FPVKWASPEVFSFSR-----YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG 221

Query: 124 -------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                       +Y            +  C  + PE RP  S LL 
Sbjct: 222 FRLYKPRLASTHVY----------QIMNHCWRERPEDRPAFSRLLR 257

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 85.6 bits (213), Expect = 1e-18
 Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 53/208 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + +   L +++ G+ F H  +V+HRDL+  N+L+ ++GE+K+ +FGL+R        
Sbjct: 98  LDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLAR-------- 149

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPP 108
                G P           W   P+++  G K    Y   ID+W+ G I A     G+P 
Sbjct: 150 ---AFGIPVRCYSAEVVTLWYRPPDVL-FGAKL---YSTSIDMWSAGCIFAELANAGRPL 202

Query: 109 FEDMHPTRALFQIVR-------------------NPPPGLYRASNWSQHY-------VDF 142
           F        L +I R                    P P     ++             D 
Sbjct: 203 FPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDL 262

Query: 143 IAECLEKNPEHRPYMSELLEHPFITSLP 170
           +   L+ NP  R    E L+HP+ +   
Sbjct: 263 LQNLLKCNPVQRISAEEALQHPYFSDFC 290

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 27/166 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+      +  K      
Sbjct: 122 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK 181

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P  W APE +         + ++ DVW+ G+   E    G+ P+  M  +     + + 
Sbjct: 182 WPVKWYAPECINYYK-----FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG 236

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                P   P  +Y          D +  C   + E+RP  + +  
Sbjct: 237 ERMGCPAGCPREMY----------DLMNLCWTYDVENRPGFAAVEL 272

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 26/162 (16%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-SW 70
           I  GM +L +  ++HRDL   NVL+     VKI DFGL++       +     G  P  W
Sbjct: 126 IAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW 185

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN----- 124
           MA E +         Y ++ DVW+ G+T  EL   G  P++ +  +     + +      
Sbjct: 186 MALESILHRI-----YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQ 240

Query: 125 P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           P      +Y            + +C   + + RP   EL+  
Sbjct: 241 PPICTIDVY----------MIMRKCWMIDADSRPKFRELIIE 272

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 69/218 (31%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +    + +   +++ G+ F HEN ++HRDL+  N+L+ K G++K+ DFGL+R        
Sbjct: 105 LELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR-------- 156

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
                G P           W  AP+++  G +    Y   ID+W+ G    E+  GKP F
Sbjct: 157 ---AFGIPVNTFSSEVVTLWYRAPDVL-MGSRT---YSTSIDIWSCGCILAEMITGKPLF 209

Query: 110 --------------------EDM----------------HPTRALFQIVRN-PPPGLYRA 132
                               E +                 P R L Q+++      L   
Sbjct: 210 PGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPL--- 266

Query: 133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
                + +DF+   L+ NP+ R    + L HP+     
Sbjct: 267 ---DGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYY 301

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 52/202 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +        L +++ G+ + H+  V+HRDL+  N+L+ ++GE+KI DFGL+R        
Sbjct: 97  LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR-------- 148

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
                G P           W  AP+++  G K+   Y   ID+W++G    E+ +G P F
Sbjct: 149 ---AFGIPVRKYTHEIVTLWYRAPDVL-MGSKK---YSTTIDIWSVGCIFAEMVNGTPLF 201

Query: 110 ---EDMHPTRALFQIVRNPP----PGL------------YRASNWSQHY-------VDFI 143
               +      +F+I+  P     P +            Y    W           +D +
Sbjct: 202 PGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLL 261

Query: 144 AECLEKNPEHRPYMSELLEHPF 165
           ++ L+ +P  R    + LEH +
Sbjct: 262 SKMLKLDPNQRITAKQALEHAY 283

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 85.7 bits (213), Expect = 2e-18
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 47/208 (22%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            +   I  +++ ++ G+ ++H N ++HRD++ +NVL+T+DG +K+ DFGL+R     F  
Sbjct: 121 FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARA----FSL 176

Query: 61  KKTFLGSPS-------WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPFE- 110
            K    +         W   PE++  G ++   Y   ID+W  G I A E+    P  + 
Sbjct: 177 AKNSQPNRYTNRVVTLWYRPPELL-LGERD---YGPPIDLWGAGCIMA-EMWTRSPIMQG 231

Query: 111 --DMH-----------PTRA------------LFQIVRNPPPGL---YRASNWSQHYVDF 142
             + H            T                ++V+     +    +A     + +D 
Sbjct: 232 NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDL 291

Query: 143 IAECLEKNPEHRPYMSELLEHPFITSLP 170
           I + L  +P  R    + L H F  S P
Sbjct: 292 IDKLLVLDPAQRIDSDDALNHDFFWSDP 319

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 53/207 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++  HI   +   + G+ +LH++ ++HRDL+ +N+LL ++G +K+ DFGL++        
Sbjct: 109 LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK-------- 160

Query: 61  KKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPP 108
                GSP+          W  APE++  G +    Y   +D+WA+G I A EL    P 
Sbjct: 161 ---SFGSPNRAYTHQVVTRWYRAPELL-FGARM---YGVGVDMWAVGCILA-ELLLRVPF 212

Query: 109 F---EDMHPTRALFQIVRNPP----PGL-----------YRASNWSQHY-------VDFI 143
                D+     +F+ +  P     P +           +        +       +D I
Sbjct: 213 LPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLI 272

Query: 144 AECLEKNPEHRPYMSELLEHPFITSLP 170
                 NP  R   ++ L+  + ++ P
Sbjct: 273 QGLFLFNPCARITATQALKMKYFSNRP 299

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 29/167 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +         GS 
Sbjct: 125 MCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV--GSK 182

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P  W  PE++         + ++ D+WA G+   E+   GK P+E    +     I + 
Sbjct: 183 FPVRWSPPEVLMYSK-----FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 237

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                P      +Y            +  C  +  + RP    LL +
Sbjct: 238 LRLYRPHLASEKVY----------TIMYSCWHEKADERPTFKILLSN 274

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 27/164 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           ++  GM FL   + IHRDL   N+LLT     KI DFGL+R+  N  +         P  
Sbjct: 153 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 212

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN---- 124
           WMAPE +         Y    DVW+ GI   EL   G  P+  M      +++++     
Sbjct: 213 WMAPESIFNCV-----YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRM 267

Query: 125 --P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             P   P  +Y          D +  C + +P  RP   ++++ 
Sbjct: 268 LSPEHAPAEMY----------DIMKTCWDADPLKRPTFKQIVQL 301

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 29/178 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           +L ++  GM +L E + +HRDL   NVLL      KI DFGLS+                
Sbjct: 115 LLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGK 174

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P  W APE +         + +R DVW+ G+T  E    G+ P++ M     +  I + 
Sbjct: 175 WPLKWYAPECINFRK-----FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG 229

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH--PFITSLPEN 172
                P   PP LY            +++C     E RP    + +       SL   
Sbjct: 230 KRMECPPECPPELY----------ALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 277

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 85.7 bits (212), Expect = 7e-18
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 15/159 (9%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
              ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   K +    P
Sbjct: 496 YAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLP 555

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV---R 123
             WMAPE +         + +  DVW  G+   E+   G  PF+ +     + +I    R
Sbjct: 556 IKWMAPESINFRR-----FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGER 610

Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            P P      N        + +C   +P  RP  +EL  
Sbjct: 611 LPMP-----PNCPPTLYSLMTKCWAYDPSRRPRFTELKA 644

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 84.8 bits (210), Expect = 7e-18
 Identities = 42/165 (25%), Positives = 62/165 (37%), Gaps = 29/165 (17%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E+HI  IL  ++ G  F+HE+ +IHRDL+ +N LL +D  VK+ DFGL+R   +  D  
Sbjct: 127 TEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTN 186

Query: 62  KTFLGSPSWM----------------------APEIMRCGHKEVDGYDNRIDVWALG-IT 98
                  +                        APE++         Y   ID+W+ G I 
Sbjct: 187 IVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQEN----YTKSIDIWSTGCIF 242

Query: 99  AIELGDGKPPFEDMHPTRALFQ--IVRNPPPGLYRASNWSQHYVD 141
           A  L   +    D      LF         P         +   D
Sbjct: 243 AELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRD 287

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 83.1 bits (206), Expect = 8e-18
 Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 27/164 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D  +      P  
Sbjct: 156 QVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK 215

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN---- 124
           WMAPE +         Y  + DVW+ G+   E+   G  P+  +       + ++     
Sbjct: 216 WMAPETIFDRV-----YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM 270

Query: 125 --P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             P    P +Y            + +C    P  RP  SEL+EH
Sbjct: 271 RAPDYTTPEMY----------QTMLDCWHGEPSQRPTFSELVEH 304

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 82.7 bits (205), Expect = 9e-18
 Identities = 44/182 (24%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSP-S 69
           I  GM +L     IHRDL   N+L+  +  VKI DFGL++      +  K K    SP  
Sbjct: 123 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIF 182

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL----------------GDGKPPFEDMH 113
           W APE +         +    DVW+ G+   EL                  G      M 
Sbjct: 183 WYAPESLTESK-----FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMI 237

Query: 114 PTRALFQIVRN---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
               +  +  N   P P               + EC   N   RP   +L     +  + 
Sbjct: 238 VFHLIELLKNNGRLPRP-----DGCPDEIYMIMTECWNNNVNQRPSFRDL--ALRVDQIR 290

Query: 171 EN 172
           +N
Sbjct: 291 DN 292

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 82.2 bits (204), Expect = 9e-18
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 29/166 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLG 66
              +I   M +L   + +HRD+   N+L+     VK+ DFGLSR   +   +    T L 
Sbjct: 118 YSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRL- 176

Query: 67  SP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN 124
            P  WM+PE +         +    DVW   +   E+   GK PF  +     +  + + 
Sbjct: 177 -PIKWMSPESINFRR-----FTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKG 230

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                P   PP LY            +  C + +P  RP  +EL+ 
Sbjct: 231 DRLPKPDLCPPVLY----------TLMTRCWDYDPSDRPRFTELVC 266

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 33/188 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
              +I  GM F+ + + IHRDLR +N+L++     KI DFGL+R   +     +     P
Sbjct: 289 FSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFP 348

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRALFQIVRN-- 124
             W APE +  G      +  + DVW+ GI  +E+   G+ P+  M     +  + R   
Sbjct: 349 IKWTAPEAINFGS-----FTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR 403

Query: 125 ---P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLST 178
              P   P  LY          + +  C +  PE RP    +        L  +D + +T
Sbjct: 404 MPRPENCPEELY----------NIMMRCWKNRPEERPTFEYIQSV-----L--DDFYTAT 446

Query: 179 VNCQYKDQ 186
              QY++ 
Sbjct: 447 -ESQYEEI 453

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 83.1 bits (205), Expect = 1e-17
 Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 29/165 (17%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+     D  +      P  
Sbjct: 201 QVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK 260

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN--- 124
           WMAPE +       D  Y  + DVW+ G+   E+   G  P+  +       + ++    
Sbjct: 261 WMAPETIF------DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR 314

Query: 125 ---P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              P    P +Y            + +C    P  RP  SEL+EH
Sbjct: 315 MRAPDYTTPEMY----------QTMLDCWHGEPSQRPTFSELVEH 349

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 32/146 (21%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKK 61
           +E HI  +L  ++ G+ ++H   ++HRDL+ +N L+ +D  VK+ DFGL+R      +  
Sbjct: 154 TELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGN 213

Query: 62  KTFLGSPSWM---------------------------APEIMRCGHKEVDGYDNRIDVWA 94
                SP                              APE++         Y   IDVW+
Sbjct: 214 SQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQEN----YTEAIDVWS 269

Query: 95  LG-ITAIELGDGKPPFEDMHPTRALF 119
           +G I A  L   K           LF
Sbjct: 270 IGCIFAELLNMIKENVAYHADRGPLF 295

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 31/172 (18%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSP-S 69
           I  GM +L     +HRDL   NVL+  + +VKI DFGL++      +    K    SP  
Sbjct: 135 ICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVF 194

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL---------------GDGKPPFEDMHP 114
           W APE +         +    DVW+ G+T  EL                   P    M  
Sbjct: 195 WYAPECLMQSK-----FYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTV 249

Query: 115 TRALFQIVRN---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           TR +  +      P P      N        + +C E  P +R     L+E 
Sbjct: 250 TRLVNTLKEGKRLPCP-----PNCPDEVYQLMRKCWEFQPSNRTSFQNLIEG 296

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 34/179 (18%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT---FDKKKTFL 65
            + +I  GM +L   + +HRDL   N +L  D  V + DFGLS++  +       +   +
Sbjct: 152 FMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKM 211

Query: 66  GSP-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV 122
             P  W+A E +       D  Y ++ DVWA G+T  E+   G  P+  +        ++
Sbjct: 212 --PVKWIAIESLA------DRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLL 263

Query: 123 R--------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH--PFITSLPE 171
                    +    LY          + +  C   +P  RP  S L       + SLP+
Sbjct: 264 HGHRLKQPEDCLDELY----------EIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 35/191 (18%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLG 66
              ++  GM +L E   +HRDL   N +L +   VK+ DFGL+R       +  ++    
Sbjct: 129 FGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHA 188

Query: 67  S-P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
             P  W A E ++        +  + DVW+ G+   EL   G PP+  + P      + +
Sbjct: 189 RLPVKWTALESLQTYR-----FTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQ 243

Query: 124 --------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLH 175
                     P  LY            + +C E +P  RP    L+       +    + 
Sbjct: 244 GRRLPQPEYCPDSLY----------QVMQQCWEADPAVRPTFRVLVG-----EV--EQIV 286

Query: 176 LSTVNCQYKDQ 186
            + +   Y   
Sbjct: 287 SALLGDHYVQL 297

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 47/176 (26%), Positives = 62/176 (35%), Gaps = 41/176 (23%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSP-S 69
           I  GM +LH  H IHRDL   NVLL  D  VKI DFGL++      +  + +    SP  
Sbjct: 143 ICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF 202

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL---------------GDGKPPFEDMHP 114
           W APE ++        +    DVW+ G+T  EL                        M  
Sbjct: 203 WYAPECLKEYK-----FYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTV 257

Query: 115 TRALFQIVRN-----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            R    + R      P   P  +Y            +  C E     RP    L+ 
Sbjct: 258 LRLTELLERGERLPRPDKCPAEVY----------HLMKNCWETEASFRPTFENLIP 303

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 33/168 (19%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR----ETANTFDKKKTF 64
              ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR     T     K K  
Sbjct: 121 YAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGK-- 178

Query: 65  LGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIV 122
              P  WMAPE +         + +  DVW  G+   E+   G  PF+ +     + +I 
Sbjct: 179 --LPIKWMAPESINFRR-----FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIE 231

Query: 123 R--------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                    N PP LY            + +C   +P  RP  +EL  
Sbjct: 232 NGERLPMPPNCPPTLY----------SLMTKCWAYDPSRRPRFTELKA 269

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 28/163 (17%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS--P-S 69
           I  GM +L E+ ++HR+L   NVLL    +V++ DFG++       DK+  +  +  P  
Sbjct: 124 IAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD-DKQLLYSEAKTPIK 182

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN---- 124
           WMA E +  G      Y ++ DVW+ G+T  EL   G  P+  +        + +     
Sbjct: 183 WMALESIHFGK-----YTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLA 237

Query: 125 -P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            P      +Y            + +C   +   RP   EL   
Sbjct: 238 QPQICTIDVY----------MVMVKCWMIDENIRPTFKELANE 270

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 26/162 (16%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-SW 70
           I  GM +L +  ++HRDL   NVL+     VKI DFGL++       +     G  P  W
Sbjct: 126 IAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW 185

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN----- 124
           MA E +         Y ++ DVW+ G+T  EL   G  P++ +  +     + +      
Sbjct: 186 MALESILHRI-----YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQ 240

Query: 125 P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           P      +Y            + +C   + + RP   EL+  
Sbjct: 241 PPICTIDVY----------MIMVKCWMIDADSRPKFRELIIE 272

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 44/177 (24%), Positives = 60/177 (33%), Gaps = 42/177 (23%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSP-S 69
           I  GM +L     IHRDL   N+L+  +  VKI DFGL++      +  K K    SP  
Sbjct: 154 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIF 213

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL----------------GDGKPPFEDMH 113
           W APE +         +    DVW+ G+   EL                  G      M 
Sbjct: 214 WYAPESLTESK-----FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMI 268

Query: 114 PTRALFQIVRN-----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
               +  +  N     P   P  +Y            + EC   N   RP   +L  
Sbjct: 269 VFHLIELLKNNGRLPRPDGCPDEIY----------MIMTECWNNNVNQRPSFRDLAL 315

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 83.1 bits (205), Expect = 5e-17
 Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 27/166 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS- 67
           +L ++  GM +L E + +HR+L   NVLL      KI DFGLS+                
Sbjct: 441 LLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGK 500

Query: 68  -P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRN 124
            P  W APE +         + +R DVW+ G+T  E    G+ P++ M     +  I + 
Sbjct: 501 WPLKWYAPECINFRK-----FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG 555

Query: 125 -----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                P   PP LY            +++C     E RP    + +
Sbjct: 556 KRMECPPECPPELY----------ALMSDCWIYKWEDRPDFLTVEQ 591

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 64/249 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFD 59
           +    I+  + ++   + F+H   + HRD++  N+L+ +KD  +K+ DFG +++      
Sbjct: 138 IPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIP--- 194

Query: 60  KKKTFLGSPS-------WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPF- 109
                   PS       +  APE+M  G  E   Y   ID+W++G +   EL  GKP F 
Sbjct: 195 ------SEPSVAYICSRFYRAPELM-LGATE---YTPSIDLWSIGCVFG-ELILGKPLFS 243

Query: 110 -EDMH------------PTRALFQIVRNPPPGLY----RASNWSQHY--------VDFIA 144
            E               PT+     +      +     +A +W +          +D + 
Sbjct: 244 GETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLE 303

Query: 145 ECLEKNPEHRPYMSELLEHPFITSLPENDLHLSTVNCQY--------------KDQELQT 190
           + L   P+ R    E + HPF   L  +       N  +                 EL  
Sbjct: 304 QILRYEPDLRINPYEAMAHPFFDHLRNSYESEVKNNSNFPHGVNQNIPQLFNFSPYELSI 363

Query: 191 MHVEDLAAL 199
           +    L  +
Sbjct: 364 IPGNVLNRI 372

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 80.0 bits (198), Expect = 6e-17
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--------VKIVDFGLSRETANTFDK 60
           + K++   M FL EN +IH ++   N+LL ++ +        +K+ D G+S         
Sbjct: 118 VAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDIL 177

Query: 61  KKTFLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRAL 118
           ++        W+ PE +          +   D W+ G T  E    G  P   +   R L
Sbjct: 178 QE-----RIPWVPPECIENPKN----LNLATDKWSFGTTLWEICSGGDKPLSALDSQRKL 228

Query: 119 FQIVRN------PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                           L           + I  C++  P+HRP    ++ 
Sbjct: 229 QFYEDRHQLPAPKAAELA----------NLINNCMDYEPDHRPSFRAIIR 268

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 58/213 (27%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-----KDGEVKIVDFGLSRETA 55
           +S + I   L ++I G+ F H    +HRDL+  N+LL+     +   +KI DFGL+R   
Sbjct: 129 VSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR--- 185

Query: 56  NTFDKKKTFLGSPS----------WM-APEIMRCGHKEVDGYDNRIDVWALGITAIELGD 104
                     G P           W   PEI+  G +    Y   +D+W++     E+  
Sbjct: 186 --------AFGIPIRQFTHEIITLWYRPPEIL-LGSRH---YSTSVDIWSIACIWAEMLM 233

Query: 105 GKPPFEDMHPTRALFQIVRN--PP-----PGL------------YRASNWSQHY------ 139
             P F        LF+I      P     PG+            +R     +        
Sbjct: 234 KTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDD 293

Query: 140 --VDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
             +D +   LE +P  R      LEHP+ +   
Sbjct: 294 EGLDLLTAMLEMDPVKRISAKNALEHPYFSHND 326

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 28/168 (16%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKKKTFLG 66
              ++  GM +L     +HRDL   N +L +   VK+ DFGL+R       +        
Sbjct: 133 FGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 192

Query: 67  S-P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV- 122
             P  WMA E ++        +  + DVW+ G+   EL   G PP+ D++       ++ 
Sbjct: 193 KLPVKWMALESLQTQK-----FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 247

Query: 123 -------RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                     P  LY          + + +C     E RP  SEL+  
Sbjct: 248 GRRLLQPEYCPDPLY----------EVMLKCWHPKAEMRPSFSELVSR 285

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 47/231 (20%), Positives = 77/231 (33%), Gaps = 78/231 (33%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
            S   +      I+  +  LH+N +IH DL+  N+LL       +K++DFG S      +
Sbjct: 197 FSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS-----CY 251

Query: 59  DKKK--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
           + ++  T++ S  + APE++  G      Y   ID+W+LG    EL  G P      P  
Sbjct: 252 EHQRVYTYIQSRFYRAPEVI-LGA----RYGMPIDMWSLGCILAELLTGYPLL----PGE 302

Query: 117 ------ALFQIVRNPPPG--LYRASNWSQHY----------------------------- 139
                 A    +   P    L  +                                    
Sbjct: 303 DEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRG 362

Query: 140 -----------------------VDFIAECLEKNPEHRPYMSELLEHPFIT 167
                                  +DF+ +CLE +P  R    + L HP++ 
Sbjct: 363 KLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLR 413

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 30/165 (18%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKK-KTFLGSP 68
           +I  GM +L   + IHRDL   N +L +D  V + DFGLSR   + + + +   + L  P
Sbjct: 145 DIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKL--P 202

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR--- 123
             W+A E +         Y    DVWA G+T  E+   G+ P+  +        ++    
Sbjct: 203 VKWLALESLADNL-----YTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNR 257

Query: 124 -----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                     +Y          D + +C   +P+ RP  + L   
Sbjct: 258 LKQPPECMEEVY----------DLMYQCWSADPKQRPSFTCLRME 292

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 37/195 (18%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGS 67
           EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+   T D      K  L  
Sbjct: 146 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET-DYYRKGGKGLL-- 202

Query: 68  P-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR- 123
           P  WM+PE ++      DG +    DVW+ G+   E+    + P++ +   + L  ++  
Sbjct: 203 PVRWMSPESLK------DGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG 256

Query: 124 -------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL---LEHPFITSLPEND 173
                  N P  L+          + +  C + NP+ RP   E+   ++        E  
Sbjct: 257 GLLDKPDNCPDMLF----------ELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVS 306

Query: 174 LHLSTVNCQYKDQEL 188
            + S  N   + +EL
Sbjct: 307 FYYSEENKLPEPEEL 321

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 27/164 (16%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           ++  GM FL     +HRDL   NVL+T    VKI DFGL+R+  +  +         P  
Sbjct: 180 QVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVK 239

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN---- 124
           WMAPE +  G      Y  + DVW+ GI   E+   G  P+  +      +++++N    
Sbjct: 240 WMAPESLFEGI-----YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKM 294

Query: 125 --P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             P      +Y            +  C   +   RP    L   
Sbjct: 295 DQPFYATEEIY----------IIMQSCWAFDSRKRPSFPNLTSF 328

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 31/166 (18%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSP 68
           ++  GM FL   + IHRD+   NVLLT     KI DFGL+R+  N  +   K    L  P
Sbjct: 172 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARL--P 229

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRN-- 124
             WMAPE +         Y  + DVW+ GI   E+   G  P+  +      +++V++  
Sbjct: 230 VKWMAPESIFDCV-----YTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGY 284

Query: 125 ----P---PPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
               P   P  +Y            +  C    P HRP   ++   
Sbjct: 285 QMAQPAFAPKNIY----------SIMQACWALEPTHRPTFQQICSF 320

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 40/172 (23%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT-----FLGSPSW 70
           G+ FLHENH IHRD++ +N+LL +    KI DFGL+R +       +T      +G+ ++
Sbjct: 145 GINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASE---KFAQTVMTSRIVGTTAY 201

Query: 71  MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--------------TR 116
           MAPE +R G         + D+++ G+  +E+  G P  ++                  +
Sbjct: 202 MAPEALR-GEITP-----KSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEK 255

Query: 117 ALFQIV-----RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            +   +           +              ++CL +    RP + ++ + 
Sbjct: 256 TIEDYIDKKMNDADSTSVEAM-------YSVASQCLHEKKNKRPDIKKVQQL 300

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 60/219 (27%)

Query: 1   MSEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLL------TKDGEVKIVDFGLSRE 53
           +   ++  I K+++ G+ ++H    +IH D++  NVL+          ++KI D G +  
Sbjct: 128 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACW 187

Query: 54  TANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH 113
               +      + +  + +PE++  G      +    D+W+      EL  G   FE   
Sbjct: 188 YDEHY---TNSIQTREYRSPEVL-LGA----PWGCGADIWSTACLIFELITGDFLFEPDE 239

Query: 114 PTRA------LFQIVR---NPPPGLYRASNWSQHY------------------------- 139
                     + QI+      P  L R   +++ +                         
Sbjct: 240 GHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEK 299

Query: 140 -----------VDFIAECLEKNPEHRPYMSELLEHPFIT 167
                       DF++  L+ +P  R     L+ HP++ 
Sbjct: 300 YKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLK 338

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 25/182 (13%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETANTFDKKKT 63
              ++  GM FL     +HRDL   N +L +   VK+ DFGL+R     E  +  +K   
Sbjct: 197 FGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 256

Query: 64  FLGSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQI 121
            L  P  WMA E ++        +  + DVW+ G+   EL   G PP+ D++       +
Sbjct: 257 KL--PVKWMALESLQTQK-----FTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYL 309

Query: 122 V---RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL---LEHPFITSLPENDLH 175
           +   R   P             + + +C     E RP  SEL   +   F T + E+ +H
Sbjct: 310 LQGRRLLQP-----EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVH 364

Query: 176 LS 177
           ++
Sbjct: 365 VN 366

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N    KKT  G  P  
Sbjct: 165 QLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK 224

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR---- 123
           WMAPE +       D  Y ++ DVW+ G+   E+   G  P+  +        +      
Sbjct: 225 WMAPEALF------DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRM 278

Query: 124 ----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
               N    LY            + +C    P  RP   +L+E 
Sbjct: 279 DKPANCTNELY----------MMMRDCWHAVPSQRPTFKQLVED 312

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 80/238 (33%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-------------------KDG 41
               HI  +  +I   + FLH N + H DL+  N+L                      + 
Sbjct: 115 FRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINP 174

Query: 42  EVKIVDFGLSRETANTFDKKK--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITA 99
           ++K+VDFG +     T+D +   T + +  + APE++        G+    DVW++G   
Sbjct: 175 DIKVVDFGSA-----TYDDEHHSTLVSTRHYRAPEVI-LAL----GWSQPCDVWSIGCIL 224

Query: 100 IELGDGKPPFEDMHPTR------ALFQIVRNPPPG--LYRAS----------NWSQH--- 138
           IE   G   F    PT       A+ + +  P P   + +            +W +H   
Sbjct: 225 IEYYLGFTVF----PTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSA 280

Query: 139 ------------------------YVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
                                     D I + LE +P  R  + E L+HPF   L ++
Sbjct: 281 GRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLKKS 338

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 33/171 (19%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFD--KKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+        +K  
Sbjct: 186 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA-GYYRKGG 244

Query: 64  FLGSP-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
               P  WM PE        ++G + ++ D W+ G+   E+   G  P+        L  
Sbjct: 245 CAMLPVKWMPPEAF------MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEF 298

Query: 121 IV--------RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           +         +N P  +Y            + +C +  PE RP  + +LE 
Sbjct: 299 VTSGGRMDPPKNCPGPVY----------RIMTQCWQHQPEDRPNFAIILER 339

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 17/160 (10%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSP 68
              ++  GM +L +   IHRDL   N+L+ ++   KI DFGLSR       K    L  P
Sbjct: 147 FAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRL--P 204

Query: 69  -SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV---R 123
             WMA E +         Y    DVW+ G+   E+   G  P+  M       ++    R
Sbjct: 205 VRWMAIESLNYSV-----YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR 259

Query: 124 NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              P      N      D + +C  + P  RP  +++L  
Sbjct: 260 LEKP-----LNCDDEVYDLMRQCWREKPYERPSFAQILVS 294

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 45/244 (18%), Positives = 77/244 (31%), Gaps = 80/244 (32%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-------------------KDG 41
               H+  +  ++   + FLHEN + H DL+  N+L                     K+ 
Sbjct: 120 YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNT 179

Query: 42  EVKIVDFGLSRETANTFDKKK--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITA 99
            +++ DFG +     TFD +   T + +  +  PE++        G+    DVW++G   
Sbjct: 180 SIRVADFGSA-----TFDHEHHTTIVATRHYRPPEVI-LEL----GWAQPCDVWSIGCIL 229

Query: 100 IELGDGKPPFEDMHPTR------ALFQIVRNPPPG--LYRASNWSQH------------- 138
            E   G   F     T        + + +  P P   ++R                    
Sbjct: 230 FEYYRGFTLF----QTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSD 285

Query: 139 ------------------------YVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
                                     D +   LE +P  R  ++E L HPF   L   + 
Sbjct: 286 GRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEER 345

Query: 175 HLST 178
              T
Sbjct: 346 SFHT 349

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 52/208 (25%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFD 59
           +   ++   + ++   + ++H   + HRD++  N+LL  D   +K+ DFG +++      
Sbjct: 153 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR--- 209

Query: 60  KKKTFLGSPS-------WM-APEIM-RCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPF 109
                 G P+       +  APE++          Y + IDVW+ G + A EL  G+P F
Sbjct: 210 ------GEPNVSYICSRYYRAPELIFGATD-----YTSSIDVWSAGCVLA-ELLLGQPIF 257

Query: 110 ------------------------EDMHPTRALFQIVRNPPPGLYRA--SNWSQHYVDFI 143
                                    +M+P    F+  +       +          +   
Sbjct: 258 PGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALC 317

Query: 144 AECLEKNPEHRPYMSELLEHPFITSLPE 171
           +  LE  P  R    E   H F   L +
Sbjct: 318 SRLLEYTPTARLTPLEACAHSFFDELRD 345

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 32/166 (19%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGS 67
           ++  GM +L     IHRDL   NVL+T++  +KI DFGL+R+  N  D         L  
Sbjct: 211 QLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI-DYYKKTTNGRL-- 267

Query: 68  P-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR-- 123
           P  WMAPE +         Y ++ DVW+ G+   E+   G  P+  +        +    
Sbjct: 268 PVKWMAPEALFDRV-----YTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGH 322

Query: 124 ------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                 N    LY            + +C    P  RP   +L+E 
Sbjct: 323 RMDKPANCTNELY----------MMMRDCWHAVPSQRPTFKQLVED 358

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 30/168 (17%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTFDKK-KTFL 65
           ++ +I  GM +L  +HV+H+DL   NVL+     VKI D GL R    A+ +     + L
Sbjct: 133 LVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLL 192

Query: 66  GSP-SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR 123
             P  WMAPE +  G      +    D+W+ G+   E+   G  P+        +  I  
Sbjct: 193 --PIRWMAPEAIMYGK-----FSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRN 245

Query: 124 --------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                   + P  +Y            + EC  + P  RP   ++   
Sbjct: 246 RQVLPCPDDCPAWVY----------ALMIECWNEFPSRRPRFKDIHSR 283

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 50/226 (22%), Positives = 82/226 (36%), Gaps = 65/226 (28%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSRETAN 56
           +    +  +L +I+ G+ +LH N V+HRDL+ +N+L+  +    G VKI D G +R    
Sbjct: 125 LPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR---- 180

Query: 57  TFDK-KKTFLGSPS-----WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPP 108
            F+   K            W  APE++  G +    Y   ID+WA+G I A EL   +P 
Sbjct: 181 LFNSPLKPLADLDPVVVTFWYRAPELL-LGARH---YTKAIDIWAIGCIFA-ELLTSEPI 235

Query: 109 F----EDMHPTRA-----LFQIVR----------------------------NPPPGLYR 131
           F    ED+  +       L +I                              N       
Sbjct: 236 FHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSL 295

Query: 132 ASNWSQHY-------VDFIAECLEKNPEHRPYMSELLEHPFITSLP 170
                +H           + + L  +P  R    + ++ P+    P
Sbjct: 296 IKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDP 341

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 33/171 (19%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFD--KKKT 63
           + ++I  G  +L ENH IHRD+   N LLT  G     KI DFG++R+        +K  
Sbjct: 145 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA-SYYRKGG 203

Query: 64  FLGSP-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
               P  WM PE        ++G + ++ D W+ G+   E+   G  P+        L  
Sbjct: 204 CAMLPVKWMPPEAF------MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEF 257

Query: 121 IV--------RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           +         +N P  +Y            + +C +  PE RP  + +LE 
Sbjct: 258 VTSGGRMDPPKNCPGPVY----------RIMTQCWQHQPEDRPNFAIILER 298

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 30/176 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD- 59
           +    +  +  ++  GMV+L   H +HRDL   N L+ +   VKI DFG+SR+  +T D 
Sbjct: 155 LGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST-DY 213

Query: 60  -KKKTFLGSP-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPT 115
            +       P  WM PE +      +   +    DVW+ G+   E+   GK P+  +  T
Sbjct: 214 YRVGGRTMLPIRWMPPESI------LYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT 267

Query: 116 RALFQIVR--------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            A+  I +          PP +Y            +  C ++ P+ R  + ++   
Sbjct: 268 EAIDCITQGRELERPRACPPEVY----------AIMRGCWQREPQQRHSIKDVHAR 313

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           +I  GM +L E  ++HRDL   N+L+ +  ++KI DFGLSR+        K   G  P  
Sbjct: 158 QISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVK 217

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR---- 123
           WMA E +       D  Y  + DVW+ G+   E+   G  P+  + P R    +      
Sbjct: 218 WMAIESLF------DHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRM 271

Query: 124 ----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
               N    +Y            + +C ++ P+ RP  +++ + 
Sbjct: 272 ERPDNCSEEMY----------RLMLQCWKQEPDKRPVFADISKD 305

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 21/166 (12%)

Query: 13  IITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSP-S 69
           I  GM +L     +HRDL   N+L+  +  VKI DFGL++      D    +    SP  
Sbjct: 136 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIF 195

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRALFQIVRNPPPG 128
           W APE +         +  + DVW+ G+   EL                +    R+ P  
Sbjct: 196 WYAPESLSDNI-----FSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPAL 250

Query: 129 ------------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
                       L           + +  C   +P+ RP  S L  
Sbjct: 251 SRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGP 296

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 36/170 (21%)

Query: 9   ILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTF 64
           I  +I +GMV+L   H +HRDL   N L+  +  VKI DFG+SR+  +T D       T 
Sbjct: 138 IASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST-DYYRVGGHTM 196

Query: 65  LGSP-SWMAPE-IMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQ 120
           L  P  WM PE IM          +    DVW+ G+   E+   GK P+  +  T  +  
Sbjct: 197 L--PIRWMPPESIM-------YRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIEC 247

Query: 121 IVR--------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           I +          P  +Y          D +  C ++ P+ R  + E+ +
Sbjct: 248 ITQGRVLERPRVCPKEVY----------DVMLGCWQREPQQRLNIKEIYK 287

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 12  EIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGS-P-S 69
           ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    KKT  G  P  
Sbjct: 199 QVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK 258

Query: 70  WMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVR---- 123
           WMAPE +       D  Y ++ DVW+ G+   E+   G  P+  +        +      
Sbjct: 259 WMAPEALF------DRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRM 312

Query: 124 ----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
               N    LY            + +C    P  RP   +L+E 
Sbjct: 313 DKPSNCTNELY----------MMMRDCWHAVPSQRPTFKQLVED 346

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 46/177 (25%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 2   SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-- 59
           S      I +++  GM +L E   +HRDL   N L+ ++  VKI DFGLSR   +  D  
Sbjct: 172 SCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA-DYY 230

Query: 60  --KKKTFLGSP-SWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGD-GKPPFEDMHP 114
                  +  P  WM PE +          Y    DVWA G+   E+   G  P+  M  
Sbjct: 231 KADGNDAI--PIRWMPPESI------FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH 282

Query: 115 TRALFQIV--------RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              ++ +          N P  LY          + +  C  K P  RP    +   
Sbjct: 283 EEVIYYVRDGNILACPENCPLELY----------NLMRLCWSKLPADRPSFCSIHRI 329

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 46/210 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFD 59
           M    I   + +++  + ++H   + HRD++  N+LL    G +K++DFG ++       
Sbjct: 138 MPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK----ILI 193

Query: 60  KKKTFLG---SPSWMAPEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPPF------ 109
             +  +    S  + APE++         Y   ID+W+ G + A EL  G+P F      
Sbjct: 194 AGEPNVSYICSRYYRAPELIFGATN----YTTNIDIWSTGCVMA-ELMQGQPLFPGESGI 248

Query: 110 ---------------EDMHPTRALFQIVRNPPPGLYRASNWSQHY--------VDFIAEC 146
                          E +      +   + P     R   +S+ +        +D I+  
Sbjct: 249 DQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQ---IRPHPFSKVFRPRTPPDAIDLISRL 305

Query: 147 LEKNPEHRPYMSELLEHPFITSLPENDLHL 176
           LE  P  R    E L HPF   L   +  +
Sbjct: 306 LEYTPSARLTAIEALCHPFFDELRTGEARM 335

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 36/153 (23%)

Query: 7   AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLG 66
              ++ +       H   V       S V ++ DG+V +                     
Sbjct: 132 IRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPAT---------------- 175

Query: 67  SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFED---MHPTRALFQIVR 123
               M               + + D+  +G +   L   + P  +           +   
Sbjct: 176 ----MPDA------------NPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTA 219

Query: 124 NPPPGLYRASNWSQHYVD-FIAECLEKNPEHRP 155
             P             +    A  ++ +   R 
Sbjct: 220 GQPIEPADIDRDIPFQISAVAARSVQGDGGIRS 252

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 55/210 (26%)

Query: 1   MSEQHIAFILKEIITGMVFLHEN--HVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANT 57
                I   L ++I  +  LH    +V HRD++  NVL+   DG +K+ DFG +++ +  
Sbjct: 126 PPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSP- 184

Query: 58  FDKKKTFLGSPS-------WM-APEIMRCGHKEVDGYDNRIDVWALG-ITAIELGDGKPP 108
                     P+       +  APE++  G++    Y   +D+W++G I A E+  G+P 
Sbjct: 185 --------SEPNVAYICSRYYRAPELI-FGNQH---YTTAVDIWSVGCIFA-EMMLGEPI 231

Query: 109 F--EDMH------------PTRALFQIVRNPPPGLY----RASNWSQHY----------- 139
           F  ++              P+R + + +      +     +   WS  +           
Sbjct: 232 FRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEA 291

Query: 140 VDFIAECLEKNPEHRPYMSELLEHPFITSL 169
            D ++  L+  PE R    E L HP+   L
Sbjct: 292 YDLLSALLQYLPEERMKPYEALCHPYFDEL 321

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 71/223 (31%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-TKDGEVKIVDFGLSRETANTFD 59
           +++  I F + EI+  + + H   ++HRD++  NV++  +  +++++D+GL+        
Sbjct: 127 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE------- 179

Query: 60  KKKTFLGSPSWM----------APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPF 109
               F                  PE++         YD  +D+W+LG     +   K PF
Sbjct: 180 ----FYHPGQEYNVRVASRYFKGPELLVDYQM----YDYSLDMWSLGCMLASMIFRKEPF 231

Query: 110 ------EDMHPTRALFQIVR----------------------NPPPGLYRASNWSQHY-- 139
                  D      L +I +                      N   G +    W +    
Sbjct: 232 FHGHDNYDQ-----LVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHS 286

Query: 140 ----------VDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
                     +DF+ + L  + + R    E +EHP+  ++ ++
Sbjct: 287 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD 329

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 51/239 (21%), Positives = 82/239 (34%), Gaps = 78/239 (32%)

Query: 1   MSEQHIAFILKEIITGMVFLHEN--HVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETAN 56
           +S        +++ T ++FL      +IH DL+  N+LL   K   +KIVDFG S     
Sbjct: 154 VSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSS----- 208

Query: 57  TFDKKK--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL--GD-------- 104
               ++   ++ S  + +PE++  G      YD  ID+W+LG   +E+  G+        
Sbjct: 209 CQLGQRIYQYIQSRFYRSPEVL-LGM----PYDLAIDMWSLGCILVEMHTGEPLFSGANE 263

Query: 105 -----------GKPP-------------FEDMH-------------------PTRALFQI 121
                      G PP             FE +                     TR L  I
Sbjct: 264 VDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNI 323

Query: 122 VRNPPPGLYRASNWS--------QHYVDFIAECLEKNPEHRPYMSELLEHPFIT-SLPE 171
           +     G                  + D I   L+ +P+ R      L+H F   +  E
Sbjct: 324 LGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTADE 382

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 49/177 (27%)

Query: 16  GMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFL-----GSPSW 70
           G+ +LH   +IHRD++  N+LL ++   KI DFG+S++     +  +T L     G+  +
Sbjct: 151 GLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGT---ELDQTHLSTVVKGTLGY 207

Query: 71  MAPEIMRCGH---KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT------------ 115
           + PE    G    K         DV++ G+   E+   +       P             
Sbjct: 208 IDPEYFIKGRLTEKS--------DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES 259

Query: 116 ---RALFQIV------RNPPPGLYRASNWSQHYVDFIAE-CLEKNPEHRPYMSELLE 162
                L QIV      +  P  L +  +         A  CL  + E RP M ++L 
Sbjct: 260 HNNGQLEQIVDPNLADKIRPESLRKFGD--------TAVKCLALSSEDRPSMGDVLW 308

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 80/236 (33%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---------------------- 38
              + I     EI+  + +L +  + H DL+  N+LL                       
Sbjct: 134 FHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQI 193

Query: 39  ---KDGEVKIVDFGLSRETANTFDKKK--TFLGSPSWMAPEIMRCGHKEVDGYDNRIDVW 93
              K   +K++DFG +     TF      + + +  + APE++        G+D   D+W
Sbjct: 194 YRTKSTGIKLIDFGCA-----TFKSDYHGSIINTRQYRAPEVI-LNL----GWDVSSDMW 243

Query: 94  ALGITAIEL--GD-------------------GKPP---FEDMHPTRALFQIVRNPPPGL 129
           + G    EL  G                       P     +   T     + ++     
Sbjct: 244 SFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLA 303

Query: 130 YRASNWSQHYV-------------------DFIAECLEKNPEHRPYMSELLEHPFI 166
           +  +  S + +                   DF+   L+ +P  RP  +ELL+H F+
Sbjct: 304 WPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFL 359

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 47/175 (26%)

Query: 16  GMVFLHEN---HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKT-----FLGS 67
           G+ +LH++    +IHRD++ +N+LL ++ E  + DFGL++      D K T       G+
Sbjct: 143 GLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL----MDYKDTHVTTAVRGT 198

Query: 68  PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE----------------- 110
              +APE +  G         + DV+  G+  +EL  G+  F+                 
Sbjct: 199 IGHIAPEYLSTGKSSE-----KTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 253

Query: 111 DMHPTRALFQIV------RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE 159
            +   + L  +V            + +        +     C + +P  RP MSE
Sbjct: 254 GLLKEKKLEALVDVDLQGNYKDEEVEQL-------IQVALLCTQSSPMERPKMSE 301

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 45/264 (17%), Positives = 79/264 (29%), Gaps = 105/264 (39%)

Query: 1   MSEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLT--------------------- 38
           +    +  I+++++ G+ +LH +  +IH D++  N+LL+                     
Sbjct: 143 LPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGA 202

Query: 39  ----------------------------KDGEVKIVDFGLSRETANTFDKKKTFLGSP-S 69
                                       +  +VKI D G +        K  T       
Sbjct: 203 PPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNAC----WVHKHFTEDIQTRQ 258

Query: 70  WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA------LFQIVR 123
           + + E++        GY+   D+W+    A EL  G   FE             +  I+ 
Sbjct: 259 YRSLEVLIGS-----GYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIE 313

Query: 124 ---NPPPGLYRASNWSQHY------------------------------------VDFIA 144
                P  L  A  +S+ +                                     DF+ 
Sbjct: 314 LLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLL 373

Query: 145 ECLEKNPEHRPYMSELLEHPFITS 168
             LE  PE R   +E L HP++ S
Sbjct: 374 PMLELIPEKRATAAECLRHPWLNS 397

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 48/369 (13%), Positives = 92/369 (24%), Gaps = 117/369 (31%)

Query: 173 DLHLSTVNCQYKD----------QELQTMHVEDL--AALETISEDNIVQE---------- 210
           D        QYKD                 V+D+  + L     D+I+            
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 211 --LEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAY 268
                    +    FV +VL     N         Y F          +P +        
Sbjct: 68  FWTLLSKQEEMVQKFVEEVL---RIN---------YKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 269 QDMMHHEE---AQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI 325
           +D ++++    A++ V   +        L+  L  L        +  + +     +I  +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ----PYLKLRQALLEL--------RPAKNV-----LIDGV 158

Query: 326 GNAGTPINQNSTRHVLYMQV--TFGSSGKLSGAIFW------------LYQLEKWRVTGN 371
             +G        +  + + V  ++    K+   IFW            L  L+K     +
Sbjct: 159 LGSG--------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 372 RDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRA-----DVTDDKLPK----GP 422
            +    + H             EL +   S      Y        +V + K         
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 423 R---ETPDTNVAKF------QEIYQNLIDIEFDDIQ-MEIFSNVLA-------------- 458
           +    T    V  F        I  +   +     +   +    L               
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 459 --AILLIGE 465
              + +I E
Sbjct: 327 PRRLSIIAE 335

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 65/460 (14%), Positives = 148/460 (32%), Gaps = 97/460 (21%)

Query: 69  SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF-QIVRNPPP 127
           +W+A ++    +K     D +I  W      + L +   P   +   + L  QI  N   
Sbjct: 164 TWVALDVCL-SYKVQCKMDFKI-FW------LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 128 GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELL-----EHPFITSLPENDLHLSTVNCQ 182
               +SN         AE L +  + +PY + LL     ++           +   ++C+
Sbjct: 216 RSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNA-------KAWNAFNLSCK 267

Query: 183 Y----KDQELQTMHVEDLAALET--ISEDNIVQELEERHNSKNHYSFVGDVLLF------ 230
                + +++     + L+A  T  IS D+    L      K+      D          
Sbjct: 268 ILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREV 322

Query: 231 --INPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLA 288
              NP   L++            +  DN           ++ +   +    I  +   L 
Sbjct: 323 LTTNP-RRLSIIAESIR---DGLATWDN-----------WKHVNCDKLTTIIESSLNVL- 366

Query: 289 GKTTSLKHLLKHL-IFLGQGAAKV---------GEKIEKCVNVIHAIGNAGTPINQNSTR 338
            +    + +   L +F    +A +          + I+  V V+    +  + + +    
Sbjct: 367 -EPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 339 -----HVLYMQVTFGSSGK--LSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYF-Y--DA 388
                  +Y+++      +  L  +I   Y + K   + +  P   + + + +  +    
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 389 MEAAGELD---KYFLSPGRKYRYLRADVTDDKLPKGPRETPDTNVAKFQEIYQNLI---D 442
           +E    +      FL     +R+L   +  D        +    + +  + Y+  I   D
Sbjct: 484 IEHPERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDND 538

Query: 443 IEFDDIQMEI--FSNVLAAILLIGE----VEFESSAENTA 476
            +++ +   I  F   +   L+  +    +     AE+ A
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 18/125 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRETANT- 57
           +SE+ +  +   ++  + FLHEN  +H ++   N+ +      +V +  +G +     + 
Sbjct: 156 LSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSG 215

Query: 58  ------FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGDGKPPF 109
                    +    G   +++       HK   G     R D+ +LG   ++   G  P+
Sbjct: 216 KHVAYVEGSRSPHEGDLEFIS----MDLHK---GCGPSRRSDLQSLGYCMLKWLYGFLPW 268

Query: 110 EDMHP 114
            +  P
Sbjct: 269 TNCLP 273

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRETANT- 57
             +  +  +   ++  + ++HEN  +H D++ +N+LL      +V + D+GLS       
Sbjct: 148 FKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNG 207

Query: 58  ------FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGDGKPPF 109
                  + +K   G+  + +       HK   G     R DV  LG   +    GK P+
Sbjct: 208 NHKQYQENPRKGHNGTIEFTS----LDAHK---GVALSRRSDVEILGYCMLRWLCGKLPW 260

Query: 110 EDMHPTRALFQ 120
           E         Q
Sbjct: 261 EQNLKDPVAVQ 271

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 18/123 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRE--TAN 56
            S + +  +   I+  + ++HE+  +H D++ SN+LL      +V +VD+GL+       
Sbjct: 149 FSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEG 208

Query: 57  T-----FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGDGKPPF 109
                  D K+   G+  + +       H    G     R D+  LG   I+   G  P+
Sbjct: 209 VHKAYAADPKRCHDGTIEFTS----IDAHN---GVAPSRRGDLEILGYCMIQWLTGHLPW 261

Query: 110 EDM 112
           ED 
Sbjct: 262 EDN 264

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 21/122 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-----VKIVDFGLSRE-- 53
            S + +  I  ++I+ M ++H  ++I+RD++  N L+ + G      + I+DF L++E  
Sbjct: 102 FSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161

Query: 54  TANT-----FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGDGK 106
              T     + + K+  G+  +M+       H    G +   R D+ ALG   +    G 
Sbjct: 162 DPETKKHIPYREHKSLTGTARYMS----INTHL---GKEQSRRDDLEALGHMFMYFLRGS 214

Query: 107 PP 108
            P
Sbjct: 215 LP 216

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRE--TA 55
            S + +  +  ++I+ + ++H  + IHRD++  N L+    K   V I+DFGL+++   A
Sbjct: 102 FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161

Query: 56  NT-----FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGDGKPP 108
            T     + + K   G+  + +       H    G +   R D+ +LG   +    G  P
Sbjct: 162 RTHQHIPYRENKNLTGTARYAS----INTHL---GIEQSRRDDLESLGYVLMYFNLGSLP 214

Query: 109 FEDM 112
           ++ +
Sbjct: 215 WQGL 218

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 21/122 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-----EVKIVDFGLSRE-- 53
            S + +A   K+++  +  +HE  +++RD++  N L+ +        + +VDFG+ +   
Sbjct: 103 FSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162

Query: 54  TANT-----FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDN--RIDVWALGITAIELGDGK 106
              T     + +KK   G+  +M+       H    G +   R D+ ALG   +    G 
Sbjct: 163 DPVTKQHIPYREKKNLSGTARYMS----INTHL---GREQSRRDDLEALGHVFMYFLRGS 215

Query: 107 PP 108
            P
Sbjct: 216 LP 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	100.0
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	100.0
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	100.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	100.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	100.0
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	100.0
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	100.0
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	100.0
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	100.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.98
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.98
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.98
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.98
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.98
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.98
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.98
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.98
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.98
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.98
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.98
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.97
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.97
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.97
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.97
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.97
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.97
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.97
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.97
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.97
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.97
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.97
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.96
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.96
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.96
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.96
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
3bhy_A	283	Death-associated protein kinase 3; death associate	99.96
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.96
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.96
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.96
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.96
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.96
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.96
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.96
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.96
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.95
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.95
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.95
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.95
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.95
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.95
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.95
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.95
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.95
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.95
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.95
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.95
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.95
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.95
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.95
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.95
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.95
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.95
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.95
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.95
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.95
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.95
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.95
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.95
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.95
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.95
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.95
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.95
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.95
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.95
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.95
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.95
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.95
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.95
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.95
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.95
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.94
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.94
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.94
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.94
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.94
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.94
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.94
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.94
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.94
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.94
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.94
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.94
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.94
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.94
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.94
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.94
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.94
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.94
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.94
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.94
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.94
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.94
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.94
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.94
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.94
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.94
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.94
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.94
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.94
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.94
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.93
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.93
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.93
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.93
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.93
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.93
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.93
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.93
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.93
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.93
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.92
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.9
3uqc_A	286	Probable conserved transmembrane protein; structur	99.85
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.79
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.46
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.12
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.89
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.43
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	98.21
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	97.88
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	97.83
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	97.74
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	97.72
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	97.64
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	97.62
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	97.6
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	97.58
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	97.57
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.4
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	97.39
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	97.31
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	97.22
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	97.2
4drw_A	121	Protein S100-A10/annexin A2 chimeric protein; atyp	97.2
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	97.19
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	97.16
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	97.16
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	97.14
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	97.12
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	97.11
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.1
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	97.1
2jnf_A	158	Troponin C; stretch activated muscle contraction,	97.1
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	97.08
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	97.07
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	97.05
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	97.02
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	97.02
2kld_A	123	Polycystin-2; PC2, PKD2, calcium binding domain, E	97.02
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	96.99
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	96.97
3fwb_A	161	Cell division control protein 31; gene gating, com	96.95
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	96.94
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	96.94
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	96.91
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	96.91
1y1x_A	191	Leishmania major homolog of programmed cell death	96.91
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	96.9
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	96.89
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	96.86
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	96.85
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	96.85
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	96.84
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	96.82
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	96.81
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	96.8
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.79
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	96.79
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	96.78
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	96.78
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	96.77
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	96.76
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	96.74
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	96.72
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	96.7
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	96.7
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	96.69
2h2k_A	106	Protein S100-A13; calcium binding protein, metal b	96.69
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	96.69
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	96.69
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	96.67
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	96.67
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	96.65
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	96.64
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	96.63
3nxa_A	100	Protein S100-A16; S100 family, calcium binding pro	96.62
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	96.62
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	96.62
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	96.61
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	96.59
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	96.59
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	96.58
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	96.56
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	96.5
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	96.5
1c07_A	95	Protein (epidermal growth factor receptor pathway	96.47
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	96.46
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	96.44
2y5i_A	99	S100Z, S100 calcium binding protein Z; metal-bindi	96.43
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	96.38
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	96.36
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	96.35
1j55_A	95	S-100P protein; metal binding protein; 2.00A {Homo	96.34
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	96.33
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	96.31
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	96.31
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	96.26
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	96.25
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.24
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	96.23
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	96.23
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	96.21
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	96.16
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	96.14
2wcb_A	95	Protein S100-A12; calcium signalling, HOST-parasit	96.1
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	96.09
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	96.07
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	96.07
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	96.06
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	96.05
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	96.03
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	96.02
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	96.02
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	96.0
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	95.99
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	95.97
1psr_A	100	Psoriasin, S100A7; EF-hand protein, MAD phasing, p	95.96
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	95.95
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	95.95
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	95.87
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	95.81
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	95.79
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	95.78
1h8b_A	75	ACT-EF34, alpha-actinin 2, skeletal muscle isoform	95.77
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	95.77
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	95.77
1a4p_A	96	S100A10; S100 family, EF-hand protein, ligand of a	95.76
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	95.75
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	95.75
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	95.75
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	95.71
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	95.68
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	95.67
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	95.63
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	95.62
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	95.59
2jq6_A	139	EH domain-containing protein 1; metal binding prot	95.56
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	95.55
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	95.54
3li6_A	66	Calcium-binding protein; calcium signaling protein	95.5
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	95.48
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	95.34
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	95.24
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	95.24
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	95.21
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.2
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	95.13
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	94.95
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	94.92
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	94.88
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	94.72
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	94.51
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	94.38
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	94.22
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	93.97
3fia_A	121	Intersectin-1; EH 1 domain, NESG, structural genom	93.89
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	93.78
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	93.77
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	93.64
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	93.56
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	93.51
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	93.45
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	93.17
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	93.04
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	93.02
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	92.91
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	92.91
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	92.79
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	92.4
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	92.11
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	91.95
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	91.92
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	91.14
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	90.7
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	90.57
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	90.48
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	90.48
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	90.39
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	90.25
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	90.1
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	89.85
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	89.8
2hps_A	186	Coelenterazine-binding protein with bound coelent;	89.8
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	89.73
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	89.71
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	89.68
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	89.65
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	89.55
3fwb_A	161	Cell division control protein 31; gene gating, com	89.47
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	89.42
1y1x_A	191	Leishmania major homolog of programmed cell death	89.25
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	89.14
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	89.11
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	88.84
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	88.62
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	88.59
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	88.48
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	88.41
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	88.28
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	88.21
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	88.18
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	88.15
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	87.73
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	87.43
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	87.06
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	86.94
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	86.88
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	86.75
3ats_A	357	Putative uncharacterized protein; hypothetical pro	86.69
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	86.64
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	86.46
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	86.41
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	86.37
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	86.34
3bos_A	242	Putative DNA replication factor; P-loop containing	86.12
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	86.09
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	86.05
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	85.81
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	85.81
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	85.72
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	85.71
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	85.47
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	85.39
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	85.14
2jnf_A	158	Troponin C; stretch activated muscle contraction,	85.1
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	84.48
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	84.2
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	83.95
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	83.94
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	83.64
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	83.54
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	83.3
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	83.22
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	82.87
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	82.78
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	82.68
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	82.65
2eyu_A	261	Twitching motility protein PILT; pilus retraction	82.55
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	82.39
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	82.25
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	82.1
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	81.06

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=100.00  E-value=2.8e-82  Score=676.54  Aligned_cols=285  Identities=29%  Similarity=0.500  Sum_probs=266.0

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.++++|+.||..+.+|||+|+++++|||++.+++|.++.+..|.++...+.|||+|+|||+||+.|
T Consensus         9 ~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m   88 (697)
T 1lkx_A            9 GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSM   88 (697)
T ss_dssp             CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC-CC---chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEE
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ-GA---AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTF  347 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~-g~---~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~  347 (488)
                      ...+++|||||||||||||||++|.||+|++..+. +.   ..++++|+++||+|||||||||+||||||||||||+|+|
T Consensus        89 ~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F  168 (697)
T 1lkx_A           89 RQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF  168 (697)
T ss_dssp             HHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEE
T ss_pred             HhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEE
Confidence            99999999999999999999999999999999986 32   368899999999999999999999999999999999999


Q ss_pred             CCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCC-CCCCCcccccCccCCCCCCCCCCCC
Q psy9090         348 GSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLS-PGRKYRYLRADVTDDKLPKGPRETP  426 (488)
Q Consensus       348 ~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~-~~~~~~yl~~~~~~~~~~~~~~~~~  426 (488)
                      +..|.|+||+|++|||||||||. |.+||||||||||||+|+++ ++++.++|. ++..|+||+++.+       ...++
T Consensus       169 ~~~g~i~Ga~I~~yLLEKSRVv~-q~~gERnfHIFYqllaG~~~-~~~~~l~L~~~~~~y~yL~~~~~-------~~~~~  239 (697)
T 1lkx_A          169 NAVGSPIGGKITNYLLEKSRVVG-RTQGERSFHIFYQMLKGLSQ-SKLDELGLTPNAPAYEYLKKSGC-------FDVST  239 (697)
T ss_dssp             CTTCCEEEEEEEEECCCGGGGTC-CCTTCCCBHHHHHHHTTSCH-HHHHHHTCCSCGGGSHHHHHTTC-------CCCTT
T ss_pred             CCCCCEeeeeeeeeeccCceeee-ecCCCCceeehhHHhcCCCH-HHHHHhcCCCChhhCccccCCCC-------cccCC
Confidence            99999999999999999999995 99999999999999999976 567888897 8999999988743       34578


Q ss_pred             CccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEee-----cCCcccccCChhhhc
Q psy9090         427 DTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFES-----SAENTAELANPEVAA  485 (488)
Q Consensus       427 ~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~-----~~~~~~~~~~~~~~~  485 (488)
                      .||+++|+++++||++|||+++|+..||+|||||||||||+|++     .+++.+++.+++.++
T Consensus       240 ~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~  303 (697)
T 1lkx_A          240 IDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLA  303 (697)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHH
T ss_pred             CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHH
Confidence            89999999999999999999999999999999999999999987     333678888887665

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=100.00  E-value=1.6e-81  Score=676.21  Aligned_cols=284  Identities=26%  Similarity=0.412  Sum_probs=264.8

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++||..+..++|+.++++|+.||..+.+|||+|.++++|||++.++||.++.+.+|.++.+.+.|||+|++||+||+.|
T Consensus        86 ~~eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m  165 (783)
T 4db1_A           86 KIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYM  165 (783)
T ss_dssp             TCSBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             CcchhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC-----------CchhhhHhhhcchhhhhhhccccCCCCCCCccc
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG-----------AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHV  340 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g-----------~~~~~e~i~~~~~~leafgna~t~~n~nssrfg  340 (488)
                      ...+++|||||||||||||||++|.||+|++..+..           ..+++++|+++||+|||||||||+|||||||||
T Consensus       166 ~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFG  245 (783)
T 4db1_A          166 LTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFG  245 (783)
T ss_dssp             HHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSE
T ss_pred             HhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccc
Confidence            999999999999999999999999999999987542           246899999999999999999999999999999


Q ss_pred             eeEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccC-CCCCCCcccccCccCCCCC
Q psy9090         341 LYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFL-SPGRKYRYLRADVTDDKLP  419 (488)
Q Consensus       341 k~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l-~~~~~~~yl~~~~~~~~~~  419 (488)
                      |||+|+|+.+|.|+||+|++|||||||||+ |.+||||||||||||+|+++ ++++.++| .++..|+||+++.      
T Consensus       246 K~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~-q~~gERnfHIFYqLlaG~~~-~~~~~l~L~~~~~~y~yl~~g~------  317 (783)
T 4db1_A          246 KFIRIHFGATGKLASADIETYLLEKSRVIF-QLKAERDYHIFYQILSNKKP-ELLDMLLITNNPYDYAFISQGE------  317 (783)
T ss_dssp             EEEEEEECTTSBEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHHTCSSH-HHHHHTTCCSCGGGCGGGCSSC------
T ss_pred             eeEEEEECCCCCEeeeEEEEeecccceeec-cCCCCCcchhHHHHHcCCCH-HHHHHhccCCCHHHCccccCCC------
Confidence            999999999999999999999999999995 99999999999999999976 56777888 4799999998763      


Q ss_pred             CCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhhc
Q psy9090         420 KGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAA  485 (488)
Q Consensus       420 ~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~~  485 (488)
                        ...++.||+++|++|++||++|||+++|+..||+|||||||||||+|++.. ++++++.+.+.++
T Consensus       318 --~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~  382 (783)
T 4db1_A          318 --TTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEAD  382 (783)
T ss_dssp             --CCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHH
T ss_pred             --cccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHH
Confidence              236788999999999999999999999999999999999999999998764 5677787777654

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=100.00  E-value=1.2e-81  Score=680.40  Aligned_cols=286  Identities=30%  Similarity=0.432  Sum_probs=266.9

Q ss_pred             hhhhhhhhhhccchhhHHHHHHhhh-ccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         191 MHVEDLAALETISEDNIVQELEERH-NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       191 ~~v~dl~~l~~l~e~~l~~~L~~r~-~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      ..++|+..+..++|+.++++|+.|| ..+.+|||+|.++++|||++.+++|.++.+..|.++...+.|||+|+|||+||+
T Consensus        69 ~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~  148 (795)
T 1w7j_A           69 VGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK  148 (795)
T ss_dssp             TTCSSSTTCSCCSHHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHH
T ss_pred             ccccchhhhhcccHHHHHHHHHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHH
Confidence            3578999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC--chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEE
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA--AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTF  347 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~--~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~  347 (488)
                      .|...+++|||||||||||||||++|.+|+|++..+.+.  .+++++|+++||+|||||||||+||||||||||||+|+|
T Consensus       149 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F  228 (795)
T 1w7j_A          149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF  228 (795)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEE
T ss_pred             HhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEE
Confidence            999999999999999999999999999999999987654  589999999999999999999999999999999999999


Q ss_pred             CCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCC
Q psy9090         348 GSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD  427 (488)
Q Consensus       348 ~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~  427 (488)
                      +..|.|+||+|++|||||||||+ |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+       ...++.
T Consensus       229 ~~~g~i~Ga~I~~YLLEKSRVv~-q~~gERNfHIFYqLlag~~~-~~~~~l~L~~~~~y~yl~~~~~-------~~~~~~  299 (795)
T 1w7j_A          229 DKRYRIIGANMRTYLLEKSRVVF-QAEEERNYHIFYQLCASAAL-PEFKTLRLGNANYFHYTKQGGS-------PVIDGI  299 (795)
T ss_dssp             CTTSCEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHHHTTTS-GGGGGGCCCCTTTSHHHHTTSC-------CCCTTC
T ss_pred             CCCCCEeeeeceEEecccceEec-cCCCCCchHhHHHHHcCCCH-HHHHHccCCChHhCccccCCCC-------CcCCCc
Confidence            99999999999999999999995 99999999999999999976 5678899999999999998743       236788


Q ss_pred             ccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCccccc-CChhhhc
Q psy9090         428 TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAEL-ANPEVAA  485 (488)
Q Consensus       428 ~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~-~~~~~~~  485 (488)
                      ||+++|+++++||++|||+++|+..||+|||||||||||+|++.+++.+.+ .+++.++
T Consensus       300 dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~  358 (795)
T 1w7j_A          300 DDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLT  358 (795)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCcceeecCChHHHH
Confidence            999999999999999999999999999999999999999998766666666 5555443

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=100.00  E-value=2.5e-81  Score=681.10  Aligned_cols=284  Identities=28%  Similarity=0.427  Sum_probs=265.1

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++++|+.||..+.+|||+|.++++|||++.+++|.++.+..|.++...+.|||+|+|||.||+.|
T Consensus        84 ~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m  163 (837)
T 1kk8_A           84 KLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM  163 (837)
T ss_dssp             TCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             chhhhhhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC------------chhhhHhhhcchhhhhhhccccCCCCCCCcc
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA------------AKVGEKIEKCVNVIHAIGNAGTPINQNSTRH  339 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~------------~~~~e~i~~~~~~leafgna~t~~n~nssrf  339 (488)
                      ...+++|||||||||||||||++|.||+|++..+.+.            .+++++|+++||+|||||||||+||||||||
T Consensus       164 ~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRF  243 (837)
T 1kk8_A          164 VTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRF  243 (837)
T ss_dssp             HHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESS
T ss_pred             HhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCc
Confidence            9999999999999999999999999999999887542            4689999999999999999999999999999


Q ss_pred             ceeEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccC-CCCCCCcccccCccCCCC
Q psy9090         340 VLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFL-SPGRKYRYLRADVTDDKL  418 (488)
Q Consensus       340 gk~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l-~~~~~~~yl~~~~~~~~~  418 (488)
                      ||||+|+||.+|.|+||+|++|||||||||. |.+||||||||||||+|+++ ++++.++| .++..|+||+++.     
T Consensus       244 GKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~-q~~gERNfHIFYqLlaG~~~-~~~~~l~L~~~~~~y~yL~~g~-----  316 (837)
T 1kk8_A          244 GKFIRIHFGPTGKIAGADIETYLLEKSRVTY-QQSAERNYHIFYQICSNAIP-ELNDVMLVTPDSGLYSFINQGC-----  316 (837)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHTSCSSG-GGHHHHTCCSCGGGCTTTCSSC-----
T ss_pred             eeEEEEEECCCCCEeeeEEEEEeccCceeee-ecCCCCceeehHHHHcCCCH-HHHHHhCCCCChhhcccccCCC-----
Confidence            9999999999999999999999999999995 99999999999999999976 56788888 7899999998763     


Q ss_pred             CCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhhc
Q psy9090         419 PKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAA  485 (488)
Q Consensus       419 ~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~~  485 (488)
                         ...++.||+++|++|++||++|||+++|+..||+|||||||||||+|++.+ ++++++.+++.++
T Consensus       317 ---~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~  381 (837)
T 1kk8_A          317 ---LTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAE  381 (837)
T ss_dssp             ---SCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHH
T ss_pred             ---cccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHH
Confidence               236788999999999999999999999999999999999999999998764 5778888887765

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=100.00  E-value=4.2e-81  Score=670.74  Aligned_cols=284  Identities=27%  Similarity=0.425  Sum_probs=266.6

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++++|+.||..+.+|||+|.++++|||++.+++|.++.+..|.++...+.|||+|+|||+||+.|
T Consensus        87 ~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m  166 (770)
T 1w9i_A           87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM  166 (770)
T ss_dssp             TCSBGGGCSCCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             chhhhhhhccCCHHHHHHHHHHHHhcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC-----chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEE
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA-----AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVT  346 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~-----~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~  346 (488)
                      ...+++|||||||||||||||++|.||+|++..+.+.     .+++++|+++||+|||||||||+||||||||||||+|+
T Consensus       167 ~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~  246 (770)
T 1w9i_A          167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQ  246 (770)
T ss_dssp             HHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEE
T ss_pred             HhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEE
Confidence            9999999999999999999999999999999887653     57999999999999999999999999999999999999


Q ss_pred             ECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcc-cccCccCCCCCCCCCCC
Q psy9090         347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRY-LRADVTDDKLPKGPRET  425 (488)
Q Consensus       347 ~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~y-l~~~~~~~~~~~~~~~~  425 (488)
                      |+..|.|+||+|.+|||||||||+ |.+||||||||||||+|+++ ++++.++|.++..|+| |+++.        ...+
T Consensus       247 F~~~g~i~Ga~I~~yLLEKSRVv~-q~~gERnfHIFYqLlaG~~~-~~~~~l~L~~~~~y~yll~~g~--------~~~~  316 (770)
T 1w9i_A          247 FNSAGFISGASIQSYLLEKSRVVF-QSETERNYHIFYQLLAGATA-EEKKALHLAGPESFNYLNQSGC--------VDIK  316 (770)
T ss_dssp             ECTTSCEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHHHHCCH-HHHHHHTCCCGGGCTTTSSSSC--------CCCT
T ss_pred             ECCCCCEeeeEEEEEeccCceeec-ccCCCCcchhHHHHhcCCCH-HHHHHhCCCChhhccccccCCc--------cccC
Confidence            999999999999999999999995 99999999999999999977 5678899999999999 77652        2357


Q ss_pred             CCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhhc
Q psy9090         426 PDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA  485 (488)
Q Consensus       426 ~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~~  485 (488)
                      +.||+++|+++++||++|||+++|+..||+|||||||||||+|+...++++++.+++.++
T Consensus       317 ~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~l~  376 (770)
T 1w9i_A          317 GVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALN  376 (770)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEECSSSSEECSCCHHHH
T ss_pred             CCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEecCCCCccccCChHHHH
Confidence            889999999999999999999999999999999999999999995457778888887665

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=100.00  E-value=1.9e-80  Score=671.08  Aligned_cols=287  Identities=25%  Similarity=0.422  Sum_probs=258.0

Q ss_pred             hhhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCC-CCCCchhhhhccCCCCCCCChhhHHHHHHHHH
Q psy9090         191 MHVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL-NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQ  269 (488)
Q Consensus       191 ~~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~-~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~  269 (488)
                      ..++|+..+..++|+.++++|+.||..+.+|||+|+++++|||++.+ ++|.++.+..|.++...+.|||+|+|||+||+
T Consensus        53 ~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~  132 (784)
T 2v26_A           53 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFR  132 (784)
T ss_dssp             CCCSBGGGSSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHH
T ss_pred             cccchhhhhhhccHHHHHHHHHHHHhcCceeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999 69999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECC
Q psy9090         270 DMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGS  349 (488)
Q Consensus       270 ~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~  349 (488)
                      .|...+++|||||||||||||||++|.||+|++..+.+..+++++|+++||+|||||||||+||||||||||||+|+|+.
T Consensus       133 ~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~  212 (784)
T 2v26_A          133 DMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE  212 (784)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred             HHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEec
Confidence            99999999999999999999999999999999988666568999999999999999999999999999999999999999


Q ss_pred             CCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCC--------CCC--
Q psy9090         350 SGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDD--------KLP--  419 (488)
Q Consensus       350 ~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~--------~~~--  419 (488)
                      .|.|+||+|++|||||||||. |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+..        .++  
T Consensus       213 ~g~i~Ga~I~~YLLEKSRVv~-q~~gERNfHIFYqLlaG~~~-~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~  290 (784)
T 2v26_A          213 KSSVVGGFVSHYLLEKSRICV-QGKEERNYHIFYRLCAGASE-DIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQN  290 (784)
T ss_dssp             TSCEEEEEEEEECCCCGGGTC-CCTTCCSBHHHHHHHHHSCH-HHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGG
T ss_pred             CCcEeeeeeeeeeccCCeEee-ecCCCCcchhhHHHHcCCCH-HHHHHcCCCChhhCccccCCCcccccccccccccccc
Confidence            999999999999999999995 99999999999999999986 578889999999999998864210        000  


Q ss_pred             ---------CCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC--CcccccC
Q psy9090         420 ---------KGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA--ENTAELA  479 (488)
Q Consensus       420 ---------~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~--~~~~~~~  479 (488)
                               ....++++||+++|++|++||++|||+++|+..||+|||||||||||+|++..  ++++.+.
T Consensus       291 ~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~  361 (784)
T 2v26_A          291 RKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLK  361 (784)
T ss_dssp             GCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEEC
T ss_pred             ccccccccccccCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccc
Confidence                     01235678999999999999999999999999999999999999999998742  3445554

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=100.00  E-value=2e-80  Score=685.17  Aligned_cols=279  Identities=26%  Similarity=0.420  Sum_probs=258.3

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCC-CCCchhhhhccCCCCCCCChhhHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEPHIYAVADSAYQD  270 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~  270 (488)
                      .++||..|..++|+.++++|+.||..+.||||+|+++++|||++.++ ||.++.+.+|.++...+.|||+|+|||.||+.
T Consensus        58 ~veDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~  137 (1052)
T 4anj_A           58 DVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRD  137 (1052)
T ss_dssp             CCSBGGGSSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHH
T ss_pred             CCcccccCCCCCHHHHHHHHHHHHcCCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999997 99999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEECCC
Q psy9090         271 MMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSS  350 (488)
Q Consensus       271 ~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~~~  350 (488)
                      |...+++|||||||||||||||++|.||+|++..+.+..+++++|+++||||||||||||+||||||||||||+|+||..
T Consensus       138 M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~  217 (1052)
T 4anj_A          138 MKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEK  217 (1052)
T ss_dssp             HHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTT
T ss_pred             HHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCC
Confidence            99999999999999999999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             CceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCC-------------
Q psy9090         351 GKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDK-------------  417 (488)
Q Consensus       351 ~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~-------------  417 (488)
                      |.|+||+|.+|||||||||+ |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+...             
T Consensus       218 G~i~Ga~I~~YLLEKSRVv~-q~~gERNfHIFYqLlaGa~~-~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~  295 (1052)
T 4anj_A          218 SSVVGGFVSHYLLEKSRICV-QGKEERNYHIFYRLCAGASE-DIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNR  295 (1052)
T ss_dssp             SCEEEEEEEEECCCSGGGTC-CCTTCCSBHHHHHHHHHCCH-HHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGG
T ss_pred             CCEEEEEEeccccccCceee-cCCCCCCcccHHHHhcCCCH-HHHHHcCCCChHhCchhcCCCccccccccchhhhcccc
Confidence            99999999999999999995 99999999999999999987 5788899999999999997632110             


Q ss_pred             ------CCCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC
Q psy9090         418 ------LPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA  472 (488)
Q Consensus       418 ------~~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~  472 (488)
                            ..++..+++.||+++|+++++||++|||+++|+..||+|||||||||||+|++..
T Consensus       296 ~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~  356 (1052)
T 4anj_A          296 KSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG  356 (1052)
T ss_dssp             CCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC--
T ss_pred             cchhhccCCCccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecC
Confidence                  0124457889999999999999999999999999999999999999999997643

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=100.00  E-value=1.9e-79  Score=680.57  Aligned_cols=285  Identities=26%  Similarity=0.416  Sum_probs=269.2

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.++.+|+.||..+.+|||+|.++++|||++.+++|.++.+..|.++...+.|||+|+|||.||+.|
T Consensus        87 ~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m  166 (1010)
T 1g8x_A           87 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM  166 (1010)
T ss_dssp             TCSBGGGCSSCCHHHHHHHHHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHH
T ss_pred             chhhhhhhhcccHHHHHHHHHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC-----chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEE
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA-----AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVT  346 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~-----~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~  346 (488)
                      ...+++|||||||||||||||++|.||+|++..+.+.     .+++++|+.+||+|||||||||+||||||||||||+|+
T Consensus       167 ~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~  246 (1010)
T 1g8x_A          167 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQ  246 (1010)
T ss_dssp             HHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEE
T ss_pred             HhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEE
Confidence            9999999999999999999999999999999887653     47999999999999999999999999999999999999


Q ss_pred             ECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCC
Q psy9090         347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETP  426 (488)
Q Consensus       347 ~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~  426 (488)
                      |+..|.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+       ...++
T Consensus       247 F~~~g~i~Ga~i~~yLLEksRvv~-q~~~ERnfHIFYqll~g~~~-~~~~~l~L~~~~~y~yl~~~~~-------~~~~~  317 (1010)
T 1g8x_A          247 FNNAGFISGASIQSYLLEKSRVVF-QSETERNYHIFYQLLAGATA-EEKKALHLAGPESFNYLNQSGC-------VDIKG  317 (1010)
T ss_dssp             ECTTSCEEEEEEEEECCCGGGGTC-CCTTCCCBHHHHHHHHHCCH-HHHHHHTCCCGGGCGGGSSSSC-------CCCBT
T ss_pred             ECCCCCCcceEEEEEEcCCceeee-ecCCCCcchhHHHHHcCCCH-HHHHHhCCCChHhcchhcCCCc-------cccCC
Confidence            999999999999999999999995 99999999999999999977 5678899999999999998743       34678


Q ss_pred             CccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhhc
Q psy9090         427 DTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA  485 (488)
Q Consensus       427 ~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~~  485 (488)
                      .||+++|++|++||++|||+++|+..||+|||||||||||+|++.+++++++.+++.++
T Consensus       318 ~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~l~  376 (1010)
T 1g8x_A          318 VSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALN  376 (1010)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTTSSCBCSCCHHHH
T ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCCCccccCChHHHH
Confidence            89999999999999999999999999999999999999999987766788888887665

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=100.00  E-value=3.8e-79  Score=679.33  Aligned_cols=283  Identities=27%  Similarity=0.448  Sum_probs=265.2

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.++++|+.||..+.+|||+|.++++|||++.+++|.++.+..|.++...+.|||+|+|||.||+.|
T Consensus        61 ~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m  140 (995)
T 2ycu_A           61 KAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSM  140 (995)
T ss_dssp             TCSBGGGCSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             ccchhhhhccccHHHHHHHHHHHHhcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC---------chhhhHhhhcchhhhhhhccccCCCCCCCcccee
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA---------AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLY  342 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~---------~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~  342 (488)
                      ...+++|||||||||||||||++|.||+|++..+.+.         .+++++|+.+||+|||||||||+|||||||||||
T Consensus       141 ~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~  220 (995)
T 2ycu_A          141 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKF  220 (995)
T ss_dssp             HHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEE
T ss_pred             HhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceE
Confidence            9999999999999999999999999999999987653         4789999999999999999999999999999999


Q ss_pred             EEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCC
Q psy9090         343 MQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGP  422 (488)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~  422 (488)
                      |+|+|+.+|.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.++|.++..|+||+++..        
T Consensus       221 i~i~F~~~g~i~Ga~i~~yLLEksRvv~-q~~~ERnfHIFYqll~g~~~-~~~~~l~L~~~~~y~yl~~~~~--------  290 (995)
T 2ycu_A          221 IRINFDVAGYIVGANIETYLLEKSRAIR-QAKDECSFHIFYQLLGGAGE-QLKADLLLEPCSHYRFLTNGPS--------  290 (995)
T ss_dssp             EEEEECTTSCEEEEEEEEECCCGGGGTC-CCTTCCCBHHHHHHHHHCCH-HHHHHTTCCCGGGCTTSTTCSC--------
T ss_pred             EEEEECCCCCEeeeEEEEEeccCCeeec-cCCCCCcchhHHHHHcCCCH-HHHHHcCCCChHHcccccCCcc--------
Confidence            9999999999999999999999999995 99999999999999999977 5678889999999999987642        


Q ss_pred             CCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhhc
Q psy9090         423 RETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAA  485 (488)
Q Consensus       423 ~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~~  485 (488)
                      ..++ ||+++|++|++||++|||+++|+..||+|||||||||||+|++.+ ++++++.+++.++
T Consensus       291 ~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~  353 (995)
T 2ycu_A          291 SSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQ  353 (995)
T ss_dssp             SSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHH
T ss_pred             ccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChHHHH
Confidence            2456 899999999999999999999999999999999999999998765 5678888877665

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=100.00  E-value=3.7e-79  Score=684.13  Aligned_cols=285  Identities=30%  Similarity=0.431  Sum_probs=266.4

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhh-ccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERH-NSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQD  270 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~-~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~  270 (488)
                      .++|+..+..++++.++.+|+.|| ..+.+|||+|+++++|||++.+++|.++.+..|.++...+.|||+|+|||.||+.
T Consensus        70 ~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~  149 (1080)
T 2dfs_A           70 GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQ  149 (1080)
T ss_dssp             SCSBSTTCSSCSHHHHHHHHHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             chhhhhhhhhcchHHHHHHHHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHH
Confidence            578999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCC--chhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEEC
Q psy9090         271 MMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA--AKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFG  348 (488)
Q Consensus       271 ~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~--~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~  348 (488)
                      |...+++|||||||||||||||++|.||+|++..+.+.  .+++++|+.+||+|||||||||+||||||||||||+|+||
T Consensus       150 m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~  229 (1080)
T 2dfs_A          150 MARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFD  229 (1080)
T ss_dssp             HHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEEC
T ss_pred             HHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEEC
Confidence            99999999999999999999999999999999987654  5899999999999999999999999999999999999999


Q ss_pred             CCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCc
Q psy9090         349 SSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT  428 (488)
Q Consensus       349 ~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~  428 (488)
                      ..|.|+||+|.+|||||||||+ |.+||||||||||||+|+++ ++++.++|.++..|+||+++.+       ...++.|
T Consensus       230 ~~g~i~Ga~i~~yLLEKsRVv~-q~~~ERnfHIFYqllag~~~-~~~~~l~L~~~~~y~yl~~~~~-------~~~~~~d  300 (1080)
T 2dfs_A          230 KRYRIIGANMRTYLLEKSRVVF-QAEEERNYHIFYQLCASAAL-PEFKTLRLGNANYFHYTKQGGS-------PVIDGID  300 (1080)
T ss_dssp             TTCCEEEEEEEEECCCCGGGTC-CCTTCCSBHHHHHHHHTTTS-SGGGGTCCCCTTTCTTTSTTSC-------CSCTTCC
T ss_pred             CCCCEeeecceeEeecCceeec-cCCCCCcchhHHHHHcCCCh-HHHHHccCCCHHhcCcccCCCC-------CCCCCcc
Confidence            9999999999999999999995 99999999999999999976 5678899999999999998743       2367889


Q ss_pred             cHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCccccc-CChhhhc
Q psy9090         429 NVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAEL-ANPEVAA  485 (488)
Q Consensus       429 d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~-~~~~~~~  485 (488)
                      |+++|++|+.||++|||+++|+..||+|||||||||||+|++.+++.+.+ .+++.++
T Consensus       301 D~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~  358 (1080)
T 2dfs_A          301 DAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLT  358 (1080)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEECCSSCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCcceeecCChHHHH
Confidence            99999999999999999999999999999999999999998776666665 5555443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=100.00  E-value=1.3e-77  Score=686.08  Aligned_cols=284  Identities=28%  Similarity=0.454  Sum_probs=267.2

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++++.++++|+.||..+.||||+|.++++|||++.+++|.++.+..|.++...+.|||+|+|||.||+.|
T Consensus        84 ~~~Dl~~l~~l~e~~vl~~L~~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m  163 (1184)
T 1i84_S           84 KVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM  163 (1184)
T ss_dssp             TCSBTTSSSCCCTTHHHHHHHHHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHH
T ss_pred             ccchhhhhccccHHHHHHHHHHHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC----------------CchhhhHhhhcchhhhhhhccccCCCCC
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG----------------AAKVGEKIEKCVNVIHAIGNAGTPINQN  335 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g----------------~~~~~e~i~~~~~~leafgna~t~~n~n  335 (488)
                      ...+++|||||||||||||||++|.||+|++..+.+                ..+++++|+.+||||||||||||+||||
T Consensus       164 ~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~N  243 (1184)
T 1i84_S          164 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDN  243 (1184)
T ss_dssp             HHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEE
T ss_pred             HhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCcc
Confidence            999999999999999999999999999999998765                3578999999999999999999999999


Q ss_pred             CCccceeEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccC
Q psy9090         336 STRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTD  415 (488)
Q Consensus       336 ssrfgk~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~  415 (488)
                      ||||||||+|+|+..|.|+||+|.+|||||||||+ |.+||||||||||||+|+++ +++..++|.++..|+||+++.  
T Consensus       244 SSRfgk~~~i~f~~~g~i~ga~i~~ylLEksRv~~-q~~~ErnfhiFYqll~g~~~-~~~~~l~l~~~~~~~yl~~~~--  319 (1184)
T 1i84_S          244 SSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIR-QAKDERTFHIFYYLIAGASE-QMRNDLLLEGFNNYTFLSNGH--  319 (1184)
T ss_dssp             EECSCEEEEEEECSSSCEEEEEEEECCCCCGGGSC-CCTTCCCCTHHHHHHHHCCH-HHHHHTTCCCTTSCSSCTTSS--
T ss_pred             ccccceeEEEEECCCCCEeeeEEeEeecCCceeee-ecCCCCchhhHHHHHcCCCH-HHHHHcCCCChHhCCccCCCC--
Confidence            99999999999999999999999999999999995 99999999999999999976 567889999999999998763  


Q ss_pred             CCCCCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhhc
Q psy9090         416 DKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAA  485 (488)
Q Consensus       416 ~~~~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~~  485 (488)
                            ...+++||+++|.+|+.||++|||+++++..||+|||||||||||+|.+.. ++++++.+++.++
T Consensus       320 ------~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~  384 (1184)
T 1i84_S          320 ------VPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQ  384 (1184)
T ss_dssp             ------CCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHH
T ss_pred             ------cCCCCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHH
Confidence                  236788999999999999999999999999999999999999999998654 5778888877654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.1e-42  Score=337.18  Aligned_cols=176  Identities=27%  Similarity=0.491  Sum_probs=154.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++.|++||+.||+|||++||+||||||+|||++.+|.+||+|||+|+..........+.+||+.|+|||++.+  
T Consensus       123 l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~--  200 (304)
T 3ubd_A          123 FTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNR--  200 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhcc--
Confidence            689999999999999999999999999999999999999999999999999876554455667899999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..|+.++|||||||++|+|+||++||.+.+..+...++.....+   .+..+|+++++||.+||..||++|||    
T Consensus       201 ---~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~---~p~~~s~~~~~li~~~L~~dP~~R~ta~~~  274 (304)
T 3ubd_A          201 ---RGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLG---MPQFLSPEAQSLLRMLFKRNPANRLGAGPD  274 (304)
T ss_dssp             ---SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHTCSSGGGSTTCSTT
T ss_pred             ---CCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCC---CCCcCCHHHHHHHHHHcccCHHHCCCCCcC
Confidence               67999999999999999999999999999888888888775432   35678999999999999999999998    


Q ss_pred             -HHHHhcCcCCCCCCCCcccccccccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYK  184 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~  184 (488)
                       ++|+++||||++++|+.+......+++.
T Consensus       275 ~~~eil~Hp~f~~idw~~l~~~~~~pP~~  303 (304)
T 3ubd_A          275 GVEEIKRHSFFSTIDWNKLYRREIHPPFK  303 (304)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSSC
T ss_pred             CHHHHHcCccccCCCHHHHHhCCCCcCcC
Confidence             5899999999999998876666666554

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.9e-41  Score=332.75  Aligned_cols=169  Identities=27%  Similarity=0.477  Sum_probs=150.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+|.+++.|++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.....  .....+.+||+.|+|||++.+
T Consensus       129 l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~  208 (311)
T 4aw0_A          129 FDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTE  208 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcC
Confidence            689999999999999999999999999999999999999999999999999876432  234567799999999999987


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                           ..|+.++|||||||++|+|+||++||.+.+......++......   .+..+|+++++||.+||.+||++|||++
T Consensus       209 -----~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~---~p~~~s~~~~dli~~lL~~dp~~R~t~~  280 (311)
T 4aw0_A          209 -----KSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCE  280 (311)
T ss_dssp             -----SCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC---CCTTCCHHHHHHHHHHSCSSGGGSTTSG
T ss_pred             -----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCC---CCcccCHHHHHHHHHHccCCHhHCcChH
Confidence                 67999999999999999999999999998888888887765432   3567899999999999999999999998


Q ss_pred             H------HhcCcCCCCCCCCccccc
Q psy9090         159 E------LLEHPFITSLPENDLHLS  177 (488)
Q Consensus       159 e------ll~hp~f~~~~~~~~~~~  177 (488)
                      |      +++||||++++|+.+...
T Consensus       281 e~~~~~~i~~Hp~F~~idw~~l~~~  305 (311)
T 4aw0_A          281 EMEGYGPLKAHPFFESVTWENLHQQ  305 (311)
T ss_dssp             GGTCHHHHHTSGGGTTCCCTTGGGS
T ss_pred             HHcCCHHHHCCCCcCCCCHHHhcCC
Confidence            7      589999999999987543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=3.1e-41  Score=335.94  Aligned_cols=164  Identities=36%  Similarity=0.711  Sum_probs=149.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++.|+.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+..........+.+||+.|+|||++.+  
T Consensus       167 l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~--  244 (346)
T 4fih_A          167 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR--  244 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCC--
Confidence            689999999999999999999999999999999999999999999999999887655556677899999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++|||||||++|+|++|++||.+.+....+..+.....+....+..+|+++++||.+||..||++|||++|+
T Consensus       245 ---~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~  321 (346)
T 4fih_A          245 ---LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  321 (346)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence               67999999999999999999999999999888888888777666555566789999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      |+||||+..
T Consensus       322 l~Hp~~~~~  330 (346)
T 4fih_A          322 LKHPFLAKA  330 (346)
T ss_dssp             TTCGGGGGC
T ss_pred             hcCHhhcCC
Confidence            999999864

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=335.92  Aligned_cols=164  Identities=36%  Similarity=0.711  Sum_probs=150.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++.|++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+..........+.+||+.|+|||++.+  
T Consensus       244 l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~--  321 (423)
T 4fie_A          244 MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR--  321 (423)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCC--
Confidence            689999999999999999999999999999999999999999999999999877655556677899999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++|||||||++|+|++|++||.+.+....+..+.....+....+..+|+++++||.+||..||++|||+.|+
T Consensus       322 ---~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~el  398 (423)
T 4fie_A          322 ---LPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAEL  398 (423)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence               67999999999999999999999999999888888888777666666667889999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      |+||||+..
T Consensus       399 l~Hp~~~~~  407 (423)
T 4fie_A          399 LKHPFLAKA  407 (423)
T ss_dssp             TTCGGGGGC
T ss_pred             hcCHHhcCC
Confidence            999999864

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=6.9e-40  Score=317.05  Aligned_cols=159  Identities=29%  Similarity=0.441  Sum_probs=130.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|.+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+..... ....+.+||+.|+|||++.+  
T Consensus       109 l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~~GT~~Y~APE~~~~--  185 (275)
T 3hyh_A          109 MSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVISG--  185 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC----------------CTTSCHHHHSS--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCC-CccCCeeECcccCChhhhcC--
Confidence            689999999999999999999999999999999999999999999999999866543 34456789999999999986  


Q ss_pred             cCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..| +.++||||+||++|+|+||++||.+.+.......+.....+   .+..+|+++++||.+||..||++|||++|
T Consensus       186 ---~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~---~p~~~s~~~~~li~~~L~~dP~~R~s~~e  259 (275)
T 3hyh_A          186 ---KLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYT---LPKFLSPGAAGLIKRMLIVNPLNRISIHE  259 (275)
T ss_dssp             ---SSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC---CCTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             ---CCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCC---CCCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence               444 67999999999999999999999988877666666654332   35678999999999999999999999999


Q ss_pred             HhcCcCCCC
Q psy9090         160 LLEHPFITS  168 (488)
Q Consensus       160 ll~hp~f~~  168 (488)
                      +++||||+.
T Consensus       260 il~hpw~k~  268 (275)
T 3hyh_A          260 IMQDDWFKV  268 (275)
T ss_dssp             HHHCHHHHT
T ss_pred             HHcCccccc
Confidence            999999964

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-39  Score=318.19  Aligned_cols=160  Identities=28%  Similarity=0.539  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.+++.|+.||+.||+|||++|  ||||||||+|||++. +|.+||+|||+|+....  ....+.+|||.|+|||++.
T Consensus       126 l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~--~~~~~~~GTp~YmAPE~~~  203 (290)
T 3fpq_A          126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYE  203 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC--CccCCcccCccccCHHHcC
Confidence            588999999999999999999999  999999999999984 79999999999975433  3455678999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                            ..|+.++|||||||++|+|+||++||.+......+.+.+.....+...+...++++++||.+||..||++|||+
T Consensus       204 ------~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~  277 (290)
T 3fpq_A          204 ------EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSI  277 (290)
T ss_dssp             ------TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             ------CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCH
Confidence                  35999999999999999999999999876666556555554433333455678999999999999999999999


Q ss_pred             HHHhcCcCCCC
Q psy9090         158 SELLEHPFITS  168 (488)
Q Consensus       158 ~ell~hp~f~~  168 (488)
                      +++|+||||++
T Consensus       278 ~e~l~Hp~~~~  288 (290)
T 3fpq_A          278 KDLLNHAFFQE  288 (290)
T ss_dssp             HHHHTSGGGC-
T ss_pred             HHHhcCccccC
Confidence            99999999975

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.2e-40  Score=329.22  Aligned_cols=161  Identities=29%  Similarity=0.575  Sum_probs=145.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++|.+++.|+.||+.||+|||++|||||||||+|||++.+|.+||+|||+++..........+.+||+.|+|||++.+  
T Consensus       122 ~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~--  199 (350)
T 4b9d_A          122 FQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICEN--  199 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCC--
Confidence            478999999999999999999999999999999999999999999999999876554334456789999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++|||||||++|+|+||++||.+.+....+.++.....++  .+..+|+++++||.+||..||++|||++++
T Consensus       200 ---~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~R~s~~e~  274 (350)
T 4b9d_A          200 ---KPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPP--VSLHYSYDLRSLVSQLFKRNPRDRPSVNSI  274 (350)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCC--CCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence               679999999999999999999999999999888888888876554  356789999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |+||||+.
T Consensus       275 l~hp~~~~  282 (350)
T 4b9d_A          275 LEKGFIAK  282 (350)
T ss_dssp             HTSHHHHT
T ss_pred             hcCHHhhc
Confidence            99999975

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.7e-40  Score=348.94  Aligned_cols=313  Identities=21%  Similarity=0.363  Sum_probs=215.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc---cCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~---~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++   .++.+||+|||+++..... ......+||+.|+|||++.
T Consensus       118 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~  196 (486)
T 3mwu_A          118 FSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLR  196 (486)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-----CCTTGGGGCCGGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC-CccCCCcCCCCCCCHHHhC
Confidence            57899999999999999999999999999999999995   4567999999999866543 3345568999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +      .|+.++|||||||++|+|++|.+||.+.........+...... ..+....+|+.+++||.+||..||.+|||
T Consensus       197 ~------~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t  270 (486)
T 3mwu_A          197 G------TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRIT  270 (486)
T ss_dssp             S------CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             C------CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcC
Confidence            4      4889999999999999999999999998887777777665432 22233567999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCCcccccccc---------cccc-cchhhhh----------hhhhhh------------hhhccch
Q psy9090         157 MSELLEHPFITSLPENDLHLSTVN---------CQYK-DQELQTM----------HVEDLA------------ALETISE  204 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~~~---------~~~~-~~~~~~~----------~v~dl~------------~l~~l~e  204 (488)
                      +.++|+||||+.............         .++. ..+++..          ...+..            .-..++.
T Consensus       271 ~~~~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~l~~~~~~~~l~~~F~~~D~d~dG~I~~  350 (486)
T 3mwu_A          271 ATQCLEHPWIQKYSSETPTISDLPSLESAMTNIRQFQAEKKLAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDR  350 (486)
T ss_dssp             HHHHHHCHHHHHTCCCCCCGGGHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSSBCH
T ss_pred             HHHHhcCHhhccCcccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCceeeH
Confidence            999999999987654332111100         0110 0011110          001111            1112333


Q ss_pred             hhHHHHHHhhhc-------------cCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHH
Q psy9090         205 DNIVQELEERHN-------------SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAY  268 (488)
Q Consensus       205 ~~l~~~L~~r~~-------------~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~  268 (488)
                      +++...+.....             .......+..++..+|.++++.|+++||+.............   .+|+.+|.+.
T Consensus       351 ~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~  430 (486)
T 3mwu_A          351 DELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDG  430 (486)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHHHHHSCTTTTCCHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHHHHHHhhhccchHHHHHHHHHHhCCCC
Confidence            344322222111             011234566678889999999999999998776554333222   2999999999


Q ss_pred             HHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         269 QDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       269 ~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|.|+..+.+.++-  ..|.. ..+.++.+++.+|.++||.++++||+.++...+
T Consensus       431 dG~Is~~El~~~l~--~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~  483 (486)
T 3mwu_A          431 SGKISTKELFKLFS--QADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFV  483 (486)
T ss_dssp             SSSBCSSCC----------------------CCCCSSCSSSBCHHHHHHHHHHHC
T ss_pred             CCcCCHHHHHHHHH--HcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhh
Confidence            99999999999883  33322 267789999999999999999999999887654

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=6e-41  Score=352.15  Aligned_cols=311  Identities=21%  Similarity=0.341  Sum_probs=225.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||+++..... ......+||+.|+|||++.
T Consensus       123 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~  201 (484)
T 3nyv_A          123 FSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS-KKMKDKIGTAYYIAPEVLH  201 (484)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC-CSHHHHTTGGGTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc-cccccCCCCccccCceeec
Confidence            5788999999999999999999999999999999999   56788999999998766543 3344567999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +      .|+.++|||||||++|+|++|.+||.+.........+...... ..+....+|+.+++||.+||..||.+|||
T Consensus       202 ~------~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s  275 (484)
T 3nyv_A          202 G------TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRIS  275 (484)
T ss_dssp             T------CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             C------CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcC
Confidence            3      5889999999999999999999999998887777777665432 22233567999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCCcccccccc--------cccc-cchhhhh----------hhhhhhh------------hhccchh
Q psy9090         157 MSELLEHPFITSLPENDLHLSTVN--------CQYK-DQELQTM----------HVEDLAA------------LETISED  205 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~~~--------~~~~-~~~~~~~----------~v~dl~~------------l~~l~e~  205 (488)
                      +.++++||||+...+.........        .++. .++++..          ..++...            -..++.+
T Consensus       276 ~~e~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~qa~l~~i~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~  355 (484)
T 3nyv_A          276 ARDALDHEWIQTYTKEQISVDVPSLDNAILNIRQFQGTQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRA  355 (484)
T ss_dssp             HHHHHTSHHHHHHTC-----CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSEEEHH
T ss_pred             HHHHhhChhhcccccccccccccchHHHHHHHHHHhhhhHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCcCCCceEeHH
Confidence            999999999986544322111100        0010 0111110          0111111            1123333


Q ss_pred             hHHHHHHhhhcc---CC-------cccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC---ChhhHHHHHHHHHHHH
Q psy9090         206 NIVQELEERHNS---KN-------HYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN---EPHIYAVADSAYQDMM  272 (488)
Q Consensus       206 ~l~~~L~~r~~~---~~-------~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~---~ph~f~~~d~~~~~~~  272 (488)
                      ++...+......   ..       ....+..++..+|.++++.|.++||+..+........   -..+|+.+|++.+|.|
T Consensus       356 El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I  435 (484)
T 3nyv_A          356 ELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKI  435 (484)
T ss_dssp             HHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHTCCTTSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSEE
T ss_pred             HHHHHHHHHhhhcccccccccccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhccccCcHHHHHHHHHHHCCCCCCcC
Confidence            333322222211   00       1344567788889999999999999987654321111   1239999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +..+.+.++  +..+ -..+.++.+++.+|.++||.|+++||+.+|..+
T Consensus       436 ~~~El~~~l--~~~~-~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~  481 (484)
T 3nyv_A          436 SSTELATIF--GVSD-VDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL  481 (484)
T ss_dssp             EHHHHHHHH--HHTT-CCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred             CHHHHHHHH--HhcC-CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHhh
Confidence            999998877  3311 236789999999999999999999999988765

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=7.4e-39  Score=317.86  Aligned_cols=165  Identities=25%  Similarity=0.440  Sum_probs=141.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccC-----ccccccCCCccccch
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFD-----KKKTFLGSPSWMAPE   74 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~-----~~~~~~gt~~y~aPE   74 (488)
                      |+|.+++.|+.||+.||+|||++|||||||||+|||++.+| ++||+|||+|+.......     .....+||+.|+|||
T Consensus       147 l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE  226 (336)
T 4g3f_A          147 LPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPE  226 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHH
Confidence            68999999999999999999999999999999999999988 699999999986643211     223468999999999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      ++.+     ..|+.++|||||||++|+|+||++||.+........++.....+....+..+|+.+++||.+||..||.+|
T Consensus       227 ~~~~-----~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  301 (336)
T 4g3f_A          227 VVMG-----KPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHR  301 (336)
T ss_dssp             HHTT-----CCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             HHCC-----CCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHC
Confidence            9987     67999999999999999999999999887777777777776655444567889999999999999999999


Q ss_pred             CCHHHH-------------hcCcCCCCCC
Q psy9090         155 PYMSEL-------------LEHPFITSLP  170 (488)
Q Consensus       155 ps~~el-------------l~hp~f~~~~  170 (488)
                      ||+.|+             ++|||+....
T Consensus       302 ~sa~el~~~l~~~l~~~~~l~hPw~~~~~  330 (336)
T 4g3f_A          302 ASAMELRRKVGKALQEVGGLKSPWKGEYK  330 (336)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSCSCSSSSCC
T ss_pred             cCHHHHHHHHHHHHhhhhhccCCCcCCCC
Confidence            999997             5799998654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=9.6e-40  Score=343.87  Aligned_cols=311  Identities=22%  Similarity=0.329  Sum_probs=224.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC---CcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~---~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++..   +.+||+|||++...... ......+||+.|+|||++.
T Consensus       133 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~l~  211 (494)
T 3lij_A          133 FNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ-KKMKERLGTAYYIAPEVLR  211 (494)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT-BCBCCCCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC-ccccccCCCcCeeCHHHHc
Confidence            5788999999999999999999999999999999999764   45999999999876543 3345668999999999985


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                            ..|+.++||||+||++|+|++|.+||.+.........+....... .+....+|+.+++||.+||..||.+|||
T Consensus       212 ------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s  285 (494)
T 3lij_A          212 ------KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRIS  285 (494)
T ss_dssp             ------TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             ------ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCcc
Confidence                  358899999999999999999999999988877777776654322 2223567999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCCc---ccc---ccc---ccccc-cchhhhhh----------hhhhh------------hhhccch
Q psy9090         157 MSELLEHPFITSLPEND---LHL---STV---NCQYK-DQELQTMH----------VEDLA------------ALETISE  204 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~---~~~---~~~---~~~~~-~~~~~~~~----------v~dl~------------~l~~l~e  204 (488)
                      +.++|+||||+......   ...   ...   ...+. .++++...          ..+..            .-..++.
T Consensus       286 ~~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~qa~l~~ia~~~~~~~~~~~l~~~F~~~D~d~dG~I~~  365 (494)
T 3lij_A          286 AQQALEHPWIKEMCSKKESGIELPSLANAIENMRKFQNSQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDR  365 (494)
T ss_dssp             HHHHHTCHHHHHHHHHHHC---CCCCSSHHHHHHTTTTCCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCTTCSSEECH
T ss_pred             HHHHhcCcccccCcccccccccccccHHHHHHHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcCCCCeEcH
Confidence            99999999997642110   000   000   01111 11111110          01111            1112333


Q ss_pred             hhHHHHHHhhhcc-------CCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhc
Q psy9090         205 DNIVQELEERHNS-------KNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHH  274 (488)
Q Consensus       205 ~~l~~~L~~r~~~-------~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~  274 (488)
                      +++...+......       ......+..++..+|.++++.|.++||+..+.........   ..+|+.+|++.+|.|+.
T Consensus       366 ~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~  445 (494)
T 3lij_A          366 QELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISV  445 (494)
T ss_dssp             HHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCHHHHTCHHHHHHHHHHHCTTCSSEECH
T ss_pred             HHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhhhccccHHHHHHHHHHHCCCCCCcCCH
Confidence            3333333322110       1113455667888999999999999999887654222222   23999999999999999


Q ss_pred             CCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         275 EEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       275 ~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+.+.++  +..+ -..+.++.|++.+|.++||.|+++||+.+|..+
T Consensus       446 ~El~~~l--~~~~-~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  489 (494)
T 3lij_A          446 DELASVF--GLDH-LESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL  489 (494)
T ss_dssp             HHHHHHC---CCS-CCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHH--HhcC-CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhh
Confidence            9999887  3211 136789999999999999999999999988754

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=7e-40  Score=345.78  Aligned_cols=311  Identities=21%  Similarity=0.289  Sum_probs=229.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++   .+||+|||++...... ......+||+.|+|||++.
T Consensus       143 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~  221 (504)
T 3q5i_A          143 FDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKD-YKLRDRLGTAYYIAPEVLK  221 (504)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTT-SCBCCCCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCC-CccccccCCcCCCCHHHhc
Confidence            57899999999999999999999999999999999998876   6999999999876543 3345668999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                            ..|+.++||||+||++|+|++|.+||.+.........+....... ......+|+.+++||.+||..||.+|||
T Consensus       222 ------~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t  295 (504)
T 3q5i_A          222 ------KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCT  295 (504)
T ss_dssp             ------TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             ------cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCC
Confidence                  358899999999999999999999999988877777776654321 1122567999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCCcccccc-----c---ccccc-cchhhhh----------hhhhhh------------hhhccchh
Q psy9090         157 MSELLEHPFITSLPENDLHLST-----V---NCQYK-DQELQTM----------HVEDLA------------ALETISED  205 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~-----~---~~~~~-~~~~~~~----------~v~dl~------------~l~~l~e~  205 (488)
                      +.++|+||||+...........     .   ...+. .++++..          ..++..            .-..++.+
T Consensus       296 ~~e~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~a~l~~i~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~  375 (504)
T 3q5i_A          296 AEEALNSRWIKKYANNINKSDQKTLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKK  375 (504)
T ss_dssp             HHHHHTSHHHHHTCCCCCGGGHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCSSEECHH
T ss_pred             HHHHhcCHhhhhchhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHeeCCCCCCeEcHH
Confidence            9999999999875433211000     0   00111 0111110          111111            11224444


Q ss_pred             hHHHHHHhhhc-------cCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcC
Q psy9090         206 NIVQELEERHN-------SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHE  275 (488)
Q Consensus       206 ~l~~~L~~r~~-------~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~  275 (488)
                      ++...+.....       .......+..++..+|.++++.|.++||+..+.........   ..+|+.+|.+.+|.|+..
T Consensus       376 El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~  455 (504)
T 3q5i_A          376 ELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKE  455 (504)
T ss_dssp             HHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCHHHHTCHHHHHHHHHHHCTTCCSEECHH
T ss_pred             HHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhhhcccCHHHHHHHHHHhcCCCCCcCcHH
Confidence            44443333211       12233456677888999999999999999887654222222   239999999999999999


Q ss_pred             CCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         276 EAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       276 ~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +.+.++  +..+ -..+.++.|++.+|.++||.++++||+.+|..+
T Consensus       456 El~~~l--~~~~-~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  498 (504)
T 3q5i_A          456 ELANLF--GLTS-ISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI  498 (504)
T ss_dssp             HHHHHT--TCSC-CCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHH--hhCC-CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            998877  3322 136789999999999999999999999988654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.9e-38  Score=337.98  Aligned_cols=177  Identities=27%  Similarity=0.423  Sum_probs=151.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |+|..++.|++||+.||+|||++|||||||||+|||++.+|++||+|||+|+....  ....+.+|||.|+|||++..+ 
T Consensus       289 l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~--~~~~t~~GTp~YmAPEvl~~~-  365 (689)
T 3v5w_A          289 FSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK--KKPHASVGTHGYMAPEVLQKG-  365 (689)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS--CCCCSCCSCGGGCCHHHHSTT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCC--CCCCCccCCcCccCHHHHhCC-
Confidence            68999999999999999999999999999999999999999999999999987654  345577999999999999642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC---hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-  156 (488)
                         ..|+.++|||||||++|+|++|.+||.+..   .......+.... .  ..+..+|+++++||.+||..||.+|++ 
T Consensus       366 ---~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~-~--~~p~~~S~~a~dLI~~lL~~dP~~Rl~~  439 (689)
T 3v5w_A          366 ---VAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMA-V--ELPDSFSPELRSLLEGLLQRDVNRRLGC  439 (689)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCC-C--CCCTTSCHHHHHHHHHHTCSCGGGCTTC
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCC-C--CCCccCCHHHHHHHHHHccCCHhHCCCC
Confidence               569999999999999999999999997542   223333333332 2  235678999999999999999999998 


Q ss_pred             ----HHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         157 ----MSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       157 ----~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                          ++++++||||++++|+.+......+++.|.
T Consensus       440 ~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P~  473 (689)
T 3v5w_A          440 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPP  473 (689)
T ss_dssp             SSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCCC
T ss_pred             CCCCHHHHhcCccccCCCHHHHHcCCCCcCccCC
Confidence                799999999999999998888777777663

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.6e-37  Score=311.60  Aligned_cols=166  Identities=27%  Similarity=0.451  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-CcEEEEecCCcccccccc---------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTF---------------------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-~~vkL~Dfg~a~~~~~~~---------------------   58 (488)
                      |++.+++.+++||+.||+|||++|||||||||+|||++.+ +.+||+|||+|+......                     
T Consensus       114 l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (361)
T 4f9c_A          114 LSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKC  193 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccc
Confidence            6899999999999999999999999999999999999876 899999999997543211                     


Q ss_pred             -------CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHh-------
Q psy9090          59 -------DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVR-------  123 (488)
Q Consensus        59 -------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-~~~~~~~~~~~-------  123 (488)
                             ....+.+||+.|+|||++.+.    ..|+.++||||+||++|+|++|++||... +....+.++..       
T Consensus       194 ~~~~~~~~~~~~~~GT~~Y~APE~l~~~----~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~  269 (361)
T 4f9c_A          194 SICLSRRQQVAPRAGTPGFRAPEVLTKC----PNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRET  269 (361)
T ss_dssp             ------------CCCCGGGCCHHHHTTC----SCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHH
T ss_pred             cccccccccccccccCccccCHHHHcCC----CCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccc
Confidence                   112345799999999999752    45899999999999999999999999544 33333333221       


Q ss_pred             ------------------------------CC---CC-----------CCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090         124 ------------------------------NP---PP-----------GLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus       124 ------------------------------~~---~~-----------~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                                                    ..   .+           ........|+++++||.+||..||++|||++|
T Consensus       270 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~e  349 (361)
T 4f9c_A          270 IQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEE  349 (361)
T ss_dssp             HHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             hhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHH
Confidence                                          00   00           00112356899999999999999999999999


Q ss_pred             HhcCcCCCCCC
Q psy9090         160 LLEHPFITSLP  170 (488)
Q Consensus       160 ll~hp~f~~~~  170 (488)
                      +|+||||++++
T Consensus       350 aL~Hp~f~~i~  360 (361)
T 4f9c_A          350 ALLHPFFKDMS  360 (361)
T ss_dssp             HHTSGGGTTC-
T ss_pred             HhcCcccCCCC
Confidence            99999999764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=314.10  Aligned_cols=167  Identities=25%  Similarity=0.459  Sum_probs=139.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc----cCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT----FDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~----~~~~~~~~gt~~y~aPE~l   76 (488)
                      |++.+++.|++||+.||+|||++|||||||||+|||++.+|.+||+|||+++.....    .....+.+||+.|+|||++
T Consensus       155 l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~  234 (398)
T 4b99_A          155 LTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELM  234 (398)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHh
Confidence            689999999999999999999999999999999999999999999999999865332    1234567999999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCC-------------------CCC----
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPP-------------------GLY----  130 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~-------------------~~~----  130 (488)
                      .+.    ..|+.++||||+||++|+|++|++||.+.+....+..+...   +..                   ...    
T Consensus       235 ~~~----~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (398)
T 4b99_A          235 LSL----HEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPW  310 (398)
T ss_dssp             TTC----SCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCH
T ss_pred             cCC----CCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCH
Confidence            762    45789999999999999999999999998887777666531   110                   000    


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                        ..+.+|+++++||.+||..||.+|||++++|+||||+....
T Consensus       311 ~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          311 ETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             HHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             HHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence              01346899999999999999999999999999999998754

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.8e-36  Score=297.59  Aligned_cols=160  Identities=25%  Similarity=0.416  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC------------ccccccCCCcc
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD------------KKKTFLGSPSW   70 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~------------~~~~~~gt~~y   70 (488)
                      +..++.|+.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.......            ...+.+||+.|
T Consensus       117 ~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y  196 (299)
T 4g31_A          117 RSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLY  196 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccc
Confidence            456889999999999999999999999999999999999999999999986543211            22346899999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      +|||++.+     ..|+.++|||||||++|+|++   ||...... ..+..+.....|+  .....++...+||.+||..
T Consensus       197 mAPE~~~~-----~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~li~~~L~~  266 (299)
T 4g31_A          197 MSPEQIHG-----NSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRNLKFPP--LFTQKYPCEYVMVQDMLSP  266 (299)
T ss_dssp             SCHHHHTT-----CCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHTTCCCH--HHHHHCHHHHHHHHHHTCS
T ss_pred             cCHHHHcC-----CCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHhcCCCCC--CCcccCHHHHHHHHHHcCC
Confidence            99999986     679999999999999999996   77653322 2222333222221  1233467789999999999


Q ss_pred             CCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         150 NPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       150 dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ||++|||+.++++||||++++|.
T Consensus       267 dP~~Rps~~eil~h~~~~~~~~p  289 (299)
T 4g31_A          267 SPMERPEAINIIENAVFEDLDFP  289 (299)
T ss_dssp             SGGGSCCHHHHHTSGGGCCC---
T ss_pred             ChhHCcCHHHHhcCHhhCCCCCC
Confidence            99999999999999999988764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=289.68  Aligned_cols=160  Identities=28%  Similarity=0.509  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..|+.||+.||+|||+++||||||||+|||++.++.+||+|||+|+.....  .......+||+.|+|||++.+
T Consensus       129 l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~  208 (307)
T 3omv_A          129 FQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRM  208 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhc
Confidence            578999999999999999999999999999999999999999999999999865432  123456689999999999975


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-C-CCC-CCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-P-PGL-YRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~-~~~-~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..  ..+|+.++|||||||++|||+||+.||.+.+....+...+... . |.. ..+..+|+.+.+||.+||..||++||
T Consensus       209 ~~--~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RP  286 (307)
T 3omv_A          209 QD--NNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERP  286 (307)
T ss_dssp             CS--SCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSC
T ss_pred             cC--CCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCc
Confidence            32  1468999999999999999999999998877665555555432 2 211 23567899999999999999999999


Q ss_pred             CHHHHhc
Q psy9090         156 YMSELLE  162 (488)
Q Consensus       156 s~~ell~  162 (488)
                      |+.++++
T Consensus       287 s~~ei~~  293 (307)
T 3omv_A          287 LFPQILS  293 (307)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9998754

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=4.1e-35  Score=299.28  Aligned_cols=179  Identities=29%  Similarity=0.522  Sum_probs=150.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++..........+.+||+.|+|||++.+  
T Consensus       150 l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~--  227 (396)
T 4dc2_A          150 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG--  227 (396)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcC--
Confidence            578999999999999999999999999999999999999999999999999864444455667899999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC--------hHH-HHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH--------PTR-ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~--------~~~-~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                         ..|+.++|||||||++|+|++|++||....        ... ....+.... .  ..+..+++++++||++||..||
T Consensus       228 ---~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~p~~~s~~~~~li~~lL~~dP  301 (396)
T 4dc2_A          228 ---EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-I--RIPRSLSVKAASVLKSFLNKDP  301 (396)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCC-C--CCCTTSCHHHHHHHHHHTCSCT
T ss_pred             ---CCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccc-c--CCCCcCCHHHHHHHHHHhcCCH
Confidence               678999999999999999999999996431        112 233333332 2  2356789999999999999999


Q ss_pred             CCCCCH------HHHhcCcCCCCCCCCcccccccccccccch
Q psy9090         152 EHRPYM------SELLEHPFITSLPENDLHLSTVNCQYKDQE  187 (488)
Q Consensus       152 ~~Rps~------~ell~hp~f~~~~~~~~~~~~~~~~~~~~~  187 (488)
                      .+||++      +++++||||+.++|+.+......+++.+..
T Consensus       302 ~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p~~  343 (396)
T 4dc2_A          302 KERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNI  343 (396)
T ss_dssp             TTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCCCC
T ss_pred             hHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcCCC
Confidence            999985      799999999999999887777777776643

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=298.27  Aligned_cols=178  Identities=28%  Similarity=0.498  Sum_probs=150.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++............+||+.|+|||++.+  
T Consensus       121 ~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  198 (353)
T 3txo_A          121 FDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQE--  198 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCC--
Confidence            578999999999999999999999999999999999999999999999999865444345567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+.......+......   .+..+++.+++||++||..||.+||++   
T Consensus       199 ---~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~---~p~~~~~~~~~li~~lL~~dP~~R~~~~~~  272 (353)
T 3txo_A          199 ---MLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVV---YPTWLHEDATGILKSFMTKNPTMRLGSLTQ  272 (353)
T ss_dssp             ---HHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHTCSSGGGSTTSGGG
T ss_pred             ---CCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCC---CCCCCCHHHHHHHHHHhhhCHHHccCCccc
Confidence               56889999999999999999999999998888777777765432   345689999999999999999999998   


Q ss_pred             ---HHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         158 ---SELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       158 ---~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                         +++++||||+.++|..+......+++.+.
T Consensus       273 ~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p~  304 (353)
T 3txo_A          273 GGEHAILRHPFFKEIDWAQLNHRQIEPPFRPR  304 (353)
T ss_dssp             TCTHHHHTSGGGTTCCHHHHHTTCSCCSCCCC
T ss_pred             CCHHHHhhCCcccCCCHHHHhcCcCCCCccCC
Confidence               89999999999999887766666666553

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4e-35  Score=312.83  Aligned_cols=166  Identities=27%  Similarity=0.431  Sum_probs=145.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC--CcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD--GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~--~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+|.+++.|++||+.||+|||++||+||||||+|||++.+  +.+||+|||+++..... ....+.+||+.|+|||++.+
T Consensus       252 l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~-~~~~~~~GT~~y~APEv~~~  330 (573)
T 3uto_A          252 MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEG  330 (573)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT-SEEEEECSSGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCC-CceeeeEECccccCHHHhCC
Confidence            4789999999999999999999999999999999999854  89999999999877543 34456789999999999987


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|+|++|.+||.+.+....+..+...... .......+|+++++||.+||..||.+|||+
T Consensus       331 -----~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~  405 (573)
T 3uto_A          331 -----KPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTI  405 (573)
T ss_dssp             -----CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             -----CCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCH
Confidence                 67999999999999999999999999999888877777664322 222345789999999999999999999999


Q ss_pred             HHHhcCcCCCCCCCC
Q psy9090         158 SELLEHPFITSLPEN  172 (488)
Q Consensus       158 ~ell~hp~f~~~~~~  172 (488)
                      .++|+||||+...+.
T Consensus       406 ~e~l~Hpw~~~~~~~  420 (573)
T 3uto_A          406 HQALEHPWLTPGNAP  420 (573)
T ss_dssp             HHHHHSTTTSCCCCT
T ss_pred             HHHhcCcCcCCCCCC
Confidence            999999999987654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.4e-34  Score=289.52  Aligned_cols=178  Identities=30%  Similarity=0.520  Sum_probs=154.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++............+||+.|+|||++.+  
T Consensus       102 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  179 (337)
T 1o6l_A          102 FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED--  179 (337)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSS--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcC--
Confidence            578999999999999999999999999999999999999999999999999865443345567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..|+.++|||||||++|+|++|.+||.+.........+.....   ..+..+++++++||.+||..||.+||     
T Consensus       180 ---~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~  253 (337)
T 1o6l_A          180 ---NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEI---RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPS  253 (337)
T ss_dssp             ---SCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             ---CCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHhhcCHHHhcCCCCC
Confidence               6789999999999999999999999998887766666665432   23567899999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                      +++++++||||+.++|..+......+++.+.
T Consensus       254 ~~~ei~~h~~f~~~~~~~~~~~~~~pp~~p~  284 (337)
T 1o6l_A          254 DAKEVMEHRFFLSINWQDVVQKKLLPPFKPQ  284 (337)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSCCCC
T ss_pred             CHHHHHcCCCcCCCCHHHHHhCCCCCCCCCC
Confidence            8999999999999999887666666666554

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.1e-34  Score=289.97  Aligned_cols=178  Identities=30%  Similarity=0.516  Sum_probs=155.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++............+||+.|+|||++.+  
T Consensus       118 ~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  195 (353)
T 2i0e_A          118 FKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAY--  195 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcC--
Confidence            578999999999999999999999999999999999999999999999999865433344567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+.......+......   .+..+++++++||.+||..||.+||+    
T Consensus       196 ---~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~---~p~~~s~~~~~li~~lL~~dP~~R~~~~~~  269 (353)
T 2i0e_A          196 ---QPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVA---YPKSMSKEAVAICKGLMTKHPGKRLGCGPE  269 (353)
T ss_dssp             ---CCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHTCSCTTSCTTCSTT
T ss_pred             ---CCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHhhcCHHHcCCCCCC
Confidence               67899999999999999999999999998877777777765322   35678999999999999999999995    


Q ss_pred             -HHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                       ++++++||||+.++|+.+......+++.+.
T Consensus       270 ~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p~  300 (353)
T 2i0e_A          270 GERDIKEHAFFRYIDWEKLERKEIQPPYKPK  300 (353)
T ss_dssp             HHHHHHTSGGGTTCCHHHHHTTCSCCSCCCC
T ss_pred             CHHHHhcCccccCCCHHHHHhCCCCCCcCCC
Confidence             699999999999999988777766676653

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.3e-34  Score=290.66  Aligned_cols=178  Identities=28%  Similarity=0.551  Sum_probs=151.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++............+||+.|+|||++.+  
T Consensus       115 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  192 (345)
T 1xjd_A          115 FDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLG--  192 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcC--
Confidence            578999999999999999999999999999999999999999999999999865433344567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH-H
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS-E  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~-e  159 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+.......+.....   ..+..+++++++||.+||..||.+||++. +
T Consensus       193 ---~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~  266 (345)
T 1xjd_A          193 ---QKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP---FYPRWLEKEAKDLLVKLFVREPEKRLGVRGD  266 (345)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSC
T ss_pred             ---CCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCC---CCCcccCHHHHHHHHHHhcCCHhHcCCChHH
Confidence               5689999999999999999999999998887777666665432   13456899999999999999999999998 9


Q ss_pred             HhcCcCCCCCCCCcccccccccccccc
Q psy9090         160 LLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       160 ll~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                      +++||||+.++|+.+......+++.+.
T Consensus       267 i~~hp~f~~~~w~~l~~~~~~~p~~p~  293 (345)
T 1xjd_A          267 IRQHPLFREINWEELERKEIDPPFRPK  293 (345)
T ss_dssp             GGGSGGGTTCCHHHHHTTCSCC-----
T ss_pred             HHcCccccCCCHHHHhhCCCCCCcCCC
Confidence            999999999999887666666666543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=8.5e-35  Score=285.39  Aligned_cols=158  Identities=26%  Similarity=0.472  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..|+.||+.||+|||+++||||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       125 l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~  204 (299)
T 4asz_A          125 LTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMY  204 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcC
Confidence            57899999999999999999999999999999999999999999999999976543211  2234568999999999987


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|||+| |+.||.+.+..+....+..+..+.  .|..+|+++.+||.+||+.||++|||+
T Consensus       205 -----~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~--~p~~~~~~~~~li~~cl~~dP~~RPs~  277 (299)
T 4asz_A          205 -----RKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQ--RPRTCPQEVYELMLGCWQREPHMRKNI  277 (299)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCC--CCccchHHHHHHHHHHcCCChhHCcCH
Confidence                 679999999999999999998 999999998888888887765443  356789999999999999999999999


Q ss_pred             HHHhcCcCCC
Q psy9090         158 SELLEHPFIT  167 (488)
Q Consensus       158 ~ell~hp~f~  167 (488)
                      ++++  +|++
T Consensus       278 ~~i~--~~L~  285 (299)
T 4asz_A          278 KGIH--TLLQ  285 (299)
T ss_dssp             HHHH--HHHH
T ss_pred             HHHH--HHHH
Confidence            9984  4554

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=286.56  Aligned_cols=156  Identities=25%  Similarity=0.438  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..|+.||+.||+|||+++||||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+
T Consensus       155 l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~  234 (329)
T 4aoj_A          155 LGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILY  234 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcC
Confidence            5788999999999999999999999999999999999999999999999998654321  22345679999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|||+| |+.||.+.+..+.+..+..+..+.  .|..+++++.+||.+||..||++|||+
T Consensus       235 -----~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~--~p~~~~~~~~~li~~cl~~dP~~RPs~  307 (329)
T 4aoj_A          235 -----RKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELE--RPRACPPEVYAIMRGCWQREPQQRHSI  307 (329)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCC--CCTTCCHHHHHHHHHHCCSSTTTSCCH
T ss_pred             -----CCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCC--CcccccHHHHHHHHHHcCcChhHCcCH
Confidence                 679999999999999999998 899999998888877777765443  456789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      ++++++
T Consensus       308 ~ei~~~  313 (329)
T 4aoj_A          308 KDVHAR  313 (329)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.7e-34  Score=284.47  Aligned_cols=156  Identities=24%  Similarity=0.432  Sum_probs=136.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..|+.||+.||+|||+++||||||||+|||++.++.+||+|||+++.....  ........||+.|+|||++.+
T Consensus       142 l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~  221 (308)
T 4gt4_A          142 LEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMY  221 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhC
Confidence            578899999999999999999999999999999999999999999999999865432  123345689999999999987


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|||+| |..||.+.+..+....+..+..++  .|..+|+.+.+||.+||..||++|||+
T Consensus       222 -----~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~--~p~~~~~~~~~li~~C~~~dP~~RPs~  294 (308)
T 4gt4_A          222 -----GKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLP--CPDDCPAWVYALMIECWNEFPSRRPRF  294 (308)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CcccchHHHHHHHHHHcCCChhHCcCH
Confidence                 679999999999999999998 899999998877777776654433  466789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+|+++
T Consensus       295 ~ei~~~  300 (308)
T 4gt4_A          295 KDIHSR  300 (308)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=4.7e-34  Score=286.68  Aligned_cols=178  Identities=29%  Similarity=0.528  Sum_probs=148.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++............+||+.|+|||++.+  
T Consensus       107 l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  184 (345)
T 3a8x_A          107 LPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG--  184 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCC--
Confidence            578999999999999999999999999999999999999999999999999864433345567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCC---------ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDM---------HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                         ..|+.++|||||||++|+|++|.+||...         ........+.... .  ..+..+++.+++||.+||..||
T Consensus       185 ---~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~p~~~s~~~~~li~~lL~~dP  258 (345)
T 3a8x_A          185 ---EDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-I--RIPRSLSVKAASVLKSFLNKDP  258 (345)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCC-C--CCCTTSCHHHHHHHHHHTCSST
T ss_pred             ---CCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCC-C--CCCCCCCHHHHHHHHHHhcCCH
Confidence               57899999999999999999999999652         2222233333332 2  2356789999999999999999


Q ss_pred             CCCCCH------HHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         152 EHRPYM------SELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       152 ~~Rps~------~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                      .+||++      .++++||||+.++|+.+......+++.+.
T Consensus       259 ~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p~~p~  299 (345)
T 3a8x_A          259 KERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPN  299 (345)
T ss_dssp             TTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCC
T ss_pred             hHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCCcCCC
Confidence            999995      89999999999999877666666666553

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=6.2e-34  Score=309.71  Aligned_cols=178  Identities=30%  Similarity=0.513  Sum_probs=158.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++..++.|+.||+.||.|||++||+||||||+|||++.+|++||+|||+++..........+.+||+.|+|||++.+  
T Consensus       439 ~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~--  516 (674)
T 3pfq_A          439 FKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAY--  516 (674)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcC--
Confidence            578999999999999999999999999999999999999999999999999865444345567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+.......+.....   ..+..+++++++||.+||..||.+||++   
T Consensus       517 ---~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~  590 (674)
T 3pfq_A          517 ---QPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNV---AYPKSMSKEAVAICKGLMTKHPGKRLGCGPE  590 (674)
T ss_dssp             ---CCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCC---CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTT
T ss_pred             ---CCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCC---CCCccCCHHHHHHHHHHccCCHHHCCCCCCC
Confidence               6789999999999999999999999999888777777776432   2356789999999999999999999997   


Q ss_pred             --HHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         158 --SELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       158 --~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                        ++|++||||+.++|+.+......+++.+.
T Consensus       591 ~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p~  621 (674)
T 3pfq_A          591 GERDIKEHAFFRYIDWEKLERKEIQPPYKPK  621 (674)
T ss_dssp             HHHHHHSSGGGSSCCHHHHTTTCSCCSCCCB
T ss_pred             cHHHHhcCccccCCCHHHHHhCCCCCCCCCc
Confidence              99999999999999988877777777664

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.4e-34  Score=290.09  Aligned_cols=156  Identities=29%  Similarity=0.499  Sum_probs=133.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..|+.||+.||+|||+++||||||||+|||++.++.+||+|||+|+.......  ......||+.|+|||++.+
T Consensus       182 l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~  261 (353)
T 4ase_A          182 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD  261 (353)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhc
Confidence            47889999999999999999999999999999999999999999999999986543322  2345679999999999987


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHH-hCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV-RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                           ..|+.++|||||||++|||+| |..||.+......+.+.+ .+..+.  .|..+++++.+||.+||..||++|||
T Consensus       262 -----~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~--~p~~~~~~~~~li~~c~~~dP~~RPt  334 (353)
T 4ase_A          262 -----RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMR--APDYTTPEMYQTMLDCWHGEPSQRPT  334 (353)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             -----CCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCC--CCccCCHHHHHHHHHHcCcChhHCcC
Confidence                 679999999999999999998 999998876555444444 343332  45678999999999999999999999


Q ss_pred             HHHHhcC
Q psy9090         157 MSELLEH  163 (488)
Q Consensus       157 ~~ell~h  163 (488)
                      +.++++|
T Consensus       335 ~~eil~~  341 (353)
T 4ase_A          335 FSELVEH  341 (353)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1e-33  Score=287.06  Aligned_cols=178  Identities=26%  Similarity=0.477  Sum_probs=155.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++............+||+.|+|||++.+  
T Consensus       136 ~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  213 (373)
T 2r5t_A          136 FLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHK--  213 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCC--
Confidence            578899999999999999999999999999999999999999999999999865444345567789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH---
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM---  157 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~---  157 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+.......+......   .+..++..+++||.+||..||.+||++   
T Consensus       214 ---~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~li~~lL~~dp~~R~~~~~~  287 (373)
T 2r5t_A          214 ---QPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQ---LKPNITNSARHLLEGLLQKDRTKRLGAKDD  287 (373)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCC---CCSSSCHHHHHHHHHHTCSSGGGSTTTTTT
T ss_pred             ---CCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccC---CCCCCCHHHHHHHHHHcccCHHhCCCCCCC
Confidence               67899999999999999999999999998877777777765322   345789999999999999999999986   


Q ss_pred             -HHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         158 -SELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       158 -~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                       .++++||||+.++|+.+......+++.+.
T Consensus       288 ~~~i~~h~~f~~~~w~~l~~~~~~pp~~p~  317 (373)
T 2r5t_A          288 FMEIKSHVFFSLINWDDLINKKITPPFNPN  317 (373)
T ss_dssp             HHHHHTSGGGTTCCHHHHHTTCSCCSCCCS
T ss_pred             HHHHhCCccccCCCHHHHHhCCCCCCCCCC
Confidence             69999999999999988776666666553

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-33  Score=280.05  Aligned_cols=174  Identities=24%  Similarity=0.490  Sum_probs=152.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....   .....+||+.|+|||++.+  
T Consensus       103 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~--  177 (318)
T 1fot_A          103 FPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD---VTYTLCGTPDYIAPEVVST--  177 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS---CBCCCCSCTTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCC---ccccccCCccccCHhHhcC--
Confidence            57889999999999999999999999999999999999999999999999976543   3446689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..|+.++|+|||||++|+|++|.+||.+.+......++.....   ..+..+++++++||.+||..||.+||     
T Consensus       178 ---~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~  251 (318)
T 1fot_A          178 ---KPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAEL---RFPPFFNEDVKDLLSRLITRDLSQRLGNLQN  251 (318)
T ss_dssp             ---CCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTT
T ss_pred             ---CCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCCCCCHHHHHHHHHHhccCHHHcCCCcCC
Confidence               6788999999999999999999999998887777777776532   23567899999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                      +++++++||||+.++|+.+......+++.+
T Consensus       252 ~~~~i~~hp~f~~~~~~~~~~~~~~~p~~p  281 (318)
T 1fot_A          252 GTEDVKNHPWFKEVVWEKLLSRNIETPYEP  281 (318)
T ss_dssp             TTHHHHTSGGGSSCCHHHHHTTCSCCSCCC
T ss_pred             CHHHHhcCccccCCCHHHHHhCCCCCCCCC
Confidence            899999999999999988766666556554

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.5e-33  Score=276.97  Aligned_cols=164  Identities=40%  Similarity=0.770  Sum_probs=146.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  190 (297)
T 3fxz_A          113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR--  190 (297)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcC--
Confidence            578899999999999999999999999999999999999999999999999876654445566789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++|||||||++|+|++|..||.+.........+.....+....+..+++.+.+||.+||..||.+|||+.++
T Consensus       191 ---~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el  267 (297)
T 3fxz_A          191 ---KAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  267 (297)
T ss_dssp             ---SCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence               67899999999999999999999999988887777777665555555667789999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||+..
T Consensus       268 l~h~~~~~~  276 (297)
T 3fxz_A          268 LQHQFLKIA  276 (297)
T ss_dssp             TTCGGGGGC
T ss_pred             hhChhhccc
Confidence            999999864

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=9e-33  Score=275.42  Aligned_cols=162  Identities=27%  Similarity=0.507  Sum_probs=141.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++...... ......+||+.|+|||++.+  
T Consensus       111 l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  187 (328)
T 3fe3_A          111 MKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG-GKLDAFCGAPPYAAPELFQG--  187 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS-CGGGTTSSSGGGCCHHHHHT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC-CccccccCCcceeCcccccC--
Confidence            578999999999999999999999999999999999999999999999999765543 34456789999999999986  


Q ss_pred             cCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..+ +.++||||+||++|+|++|+.||.+.+.......+......   .+..+++++.+||.+||..||.+|||+++
T Consensus       188 ---~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~---~p~~~s~~~~~li~~~L~~dP~~R~t~~e  261 (328)
T 3fe3_A          188 ---KKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR---IPFYMSTDCENLLKRFLVLNPIKRGTLEQ  261 (328)
T ss_dssp             ---CCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHCCSSTTTSCCHHH
T ss_pred             ---CCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHCCCChhHCcCHHH
Confidence               344 47899999999999999999999998877777777665332   34567999999999999999999999999


Q ss_pred             HhcCcCCCCCCC
Q psy9090         160 LLEHPFITSLPE  171 (488)
Q Consensus       160 ll~hp~f~~~~~  171 (488)
                      +++||||+...+
T Consensus       262 il~h~~~~~~~~  273 (328)
T 3fe3_A          262 IMKDRWINAGHE  273 (328)
T ss_dssp             HTTCTTTTTTCT
T ss_pred             HhcCHhhcCCCc
Confidence            999999987543

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.3e-33  Score=289.56  Aligned_cols=185  Identities=21%  Similarity=0.324  Sum_probs=154.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+++...... ....+.+||+.|+|||++.+.
T Consensus       165 ~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  244 (410)
T 3v8s_A          165 VPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQ  244 (410)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhcc
Confidence            5789999999999999999999999999999999999999999999999997654331 133467899999999999762


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCC--CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEH--RPY  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~--Rps  156 (488)
                      .. ...|+.++|||||||++|+|++|.+||.+.+......++.... ....+....+|+++++||.+||..+|.+  ||+
T Consensus       245 ~~-~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~  323 (410)
T 3v8s_A          245 GG-DGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNG  323 (410)
T ss_dssp             TT-TCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSC
T ss_pred             CC-CcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCC
Confidence            11 1127889999999999999999999999988777777766431 1222234568999999999999999988  999


Q ss_pred             HHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         157 MSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                      ++++++||||+.++|..+......+++.+.
T Consensus       324 ~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p~  353 (410)
T 3v8s_A          324 VEEIKRHLFFKNDQWAWETLRDTVAPVVPD  353 (410)
T ss_dssp             HHHHHTSGGGCCSSCCSTTGGGSCCSCCCC
T ss_pred             HHHHhcCccccCCCHHHHhhcccCCCCCCc
Confidence            999999999999999988777777777654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=2.5e-33  Score=281.89  Aligned_cols=174  Identities=26%  Similarity=0.491  Sum_probs=152.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....   .....+||+.|+|||++.+  
T Consensus       138 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~---~~~~~~gt~~y~aPE~~~~--  212 (350)
T 1rdq_E          138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTWTLCGTPEALAPEIILS--  212 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS---CBCCCEECGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccC---CcccccCCccccCHHHhcC--
Confidence            57899999999999999999999999999999999999999999999999986543   2345689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+.......+.....   ..+..+++.+++||.+||..||.+||+    
T Consensus       213 ---~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~  286 (350)
T 1rdq_E          213 ---KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKV---RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKN  286 (350)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTT
T ss_pred             ---CCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCC---CCCCCCCHHHHHHHHHHhhcCHHhccCCccC
Confidence               5688999999999999999999999999887777777776532   235678999999999999999999998    


Q ss_pred             -HHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                       ++++++||||+.++|..+......+++.+
T Consensus       287 ~~~ei~~h~~f~~~~w~~~~~~~~~~p~~p  316 (350)
T 1rdq_E          287 GVNDIKNHKWFATTDWIAIYQRKVEAPFIP  316 (350)
T ss_dssp             TTHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             CHHHHHhCcCcCCCCHHHHhhccCCCCCCC
Confidence             99999999999999987766666555544

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2.6e-33  Score=277.14  Aligned_cols=168  Identities=24%  Similarity=0.515  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+. 
T Consensus       116 ~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  194 (311)
T 3niz_A          116 LQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGS-  194 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCC-
Confidence            5788999999999999999999999999999999999999999999999998765443444556789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCC------------------------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLY------------------------RAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~------------------------~~~  133 (488)
                         ..++.++|||||||++|+|++|.+||.+.........+..   .+.+..+                        ...
T Consensus       195 ---~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (311)
T 3niz_A          195 ---KKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIP  271 (311)
T ss_dssp             ---CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHST
T ss_pred             ---CCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCc
Confidence               4588999999999999999999999987766555544432   2211110                        013


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .+++++.+||.+||..||++|||++++++||||++++++
T Consensus       272 ~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          272 GFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             TCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSCTT
T ss_pred             ccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCCcc
Confidence            457889999999999999999999999999999987653

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=3.6e-33  Score=289.93  Aligned_cols=178  Identities=28%  Similarity=0.508  Sum_probs=152.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||+ +||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+ 
T Consensus       245 ~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~-  323 (446)
T 4ejn_A          245 FSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLED-  323 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCC-
Confidence            5789999999999999999998 99999999999999999999999999999865444344566789999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC----
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP----  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----  155 (488)
                          ..|+.++|||||||++|+|++|..||.+.........+......   .+..+++.+.+||.+||..||.+||    
T Consensus       324 ----~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~---~p~~~~~~~~~li~~~L~~dP~~R~~~~~  396 (446)
T 4ejn_A          324 ----NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIR---FPRTLGPEAKSLLSGLLKKDPKQRLGGGS  396 (446)
T ss_dssp             ----SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHTCSSTTTSTTCST
T ss_pred             ----CCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCC---CCccCCHHHHHHHHHHcccCHHHhCCCCC
Confidence                67899999999999999999999999988877776666654322   3567899999999999999999999    


Q ss_pred             -CHHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         156 -YMSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       156 -s~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                       +++++++||||+.++|+.+......+++.++
T Consensus       397 ~t~~ell~hp~f~~~~~~~~~~~~~~pp~~p~  428 (446)
T 4ejn_A          397 EDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQ  428 (446)
T ss_dssp             TTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCS
T ss_pred             CCHHHHHhCccccCCCHHHHhhCcCCCCccCC
Confidence             9999999999999999877666666666553

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=286.83  Aligned_cols=180  Identities=25%  Similarity=0.513  Sum_probs=148.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++..... ......+||+.|+|||++....
T Consensus       112 l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~  190 (384)
T 4fr4_A          112 FKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE-TQITTMAGTKPYMAPEMFSSRK  190 (384)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT-CCBCCCCSCGGGCCGGGTCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCC-CceeccCCCccccCCeeeccCC
Confidence            578999999999999999999999999999999999999999999999999866443 4456678999999999986421


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC---hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-  156 (488)
                        ...|+.++|||||||++|+|++|..||....   .......+....   ...+..+++.+.+||.+||..||.+||+ 
T Consensus       191 --~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~---~~~p~~~s~~~~~li~~lL~~dP~~R~s~  265 (384)
T 4fr4_A          191 --GAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTV---VTYPSAWSQEMVSLLKKLLEPNPDQRFSQ  265 (384)
T ss_dssp             --SCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHSCSSGGGSCCS
T ss_pred             --CCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcc---cCCCCcCCHHHHHHHHHHhcCCHhHhccc
Confidence              1458899999999999999999999997433   223333333322   2235678999999999999999999998 


Q ss_pred             HHHHhcCcCCCCCCCCcccccccccccccc
Q psy9090         157 MSELLEHPFITSLPENDLHLSTVNCQYKDQ  186 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~~~~~~~~~~~~  186 (488)
                      ++++++||||+.++|+.+......+++.+.
T Consensus       266 ~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~  295 (384)
T 4fr4_A          266 LSDVQNFPYMNDINWDAVFQKRLIPGFIPN  295 (384)
T ss_dssp             HHHHHTSGGGTTCCHHHHHTTCSCCCCCCS
T ss_pred             HHHHHcChhhhcCCHHHHHhCCCCCCCCCC
Confidence            899999999999999887766666666543

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=5.3e-33  Score=276.90  Aligned_cols=177  Identities=29%  Similarity=0.501  Sum_probs=146.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++.+  
T Consensus       118 ~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  195 (327)
T 3a62_A          118 FMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMR--  195 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcC--
Confidence            578899999999999999999999999999999999999999999999998765443334456689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..++.++|||||||++|+|++|..||.+.........+......   .+..+++.+++||.+||..||.+||     
T Consensus       196 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~---~p~~~~~~~~~li~~~L~~dp~~R~~~~~~  269 (327)
T 3a62_A          196 ---SGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLN---LPPYLTQEARDLLKKLLKRNAASRLGAGPG  269 (327)
T ss_dssp             ---SCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC---CCTTSCHHHHHHHHHHSCSCGGGSTTSSTT
T ss_pred             ---CCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHHhcCHhhccCCCCC
Confidence               56889999999999999999999999988877777777664322   3456899999999999999999999     


Q ss_pred             CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                      ++.++++||||+.++|..+......+++.+
T Consensus       270 ~~~e~l~hp~f~~~~~~~~~~~~~~~p~~p  299 (327)
T 3a62_A          270 DAGEVQAHPFFRHINWEELLARKVEPPFKP  299 (327)
T ss_dssp             THHHHHHSGGGSSCCHHHHHTTCSCCSCCC
T ss_pred             CHHHHHcCCcccCCCHHHHhhccCCCCCCC
Confidence            889999999999999887655555555543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.98  E-value=2.1e-32  Score=269.81  Aligned_cols=164  Identities=26%  Similarity=0.447  Sum_probs=136.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       117 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  193 (308)
T 3g33_A          117 LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQ-MALTPVVVTLWYRAPEVLLQ--  193 (308)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTC-CCSGGGGCCCSSCCHHHHHT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCccccccCCC-cccCCccccccccCchHHcC--
Confidence            578999999999999999999999999999999999999999999999999765433 33456689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCCC---------------------CCCCcC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGLY---------------------RASNWS  136 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~s  136 (488)
                         ..++.++|||||||++|+|++|.+||.+........++...   +....+                     ....++
T Consensus       194 ---~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (308)
T 3g33_A          194 ---STYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEME  270 (308)
T ss_dssp             ---SCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCC
T ss_pred             ---CCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCcccc
Confidence               56899999999999999999999999988877766665431   111100                     013568


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      +.+.+||.+||..||++|||+.++|+||||+...
T Consensus       271 ~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          271 ESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             HHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence            8999999999999999999999999999998743

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.98  E-value=7.1e-33  Score=286.31  Aligned_cols=183  Identities=20%  Similarity=0.425  Sum_probs=148.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++....... .....+||+.|+|||++...
T Consensus       172 l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~  251 (437)
T 4aw2_A          172 LPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAM  251 (437)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhc
Confidence            57899999999999999999999999999999999999999999999999976543322 23446899999999999731


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-CCCC-CCCCCcCHHHHHHHHHhcccCCCC--CC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-PPGL-YRASNWSQHYVDFIAECLEKNPEH--RP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~-~~~~~~s~~~~~li~~~L~~dP~~--Rp  155 (488)
                      ......|+.++|||||||++|+|++|++||.+.+......++.... .... .....+|+++++||++||..+|++  |+
T Consensus       252 ~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~  331 (437)
T 4aw2_A          252 EGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQN  331 (437)
T ss_dssp             HTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTT
T ss_pred             ccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCC
Confidence            1112568899999999999999999999999988777776665321 0111 122458999999999999988888  99


Q ss_pred             CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                      +++++++||||++++|+.+.  ...+++.+
T Consensus       332 ~~~eil~Hpff~~i~w~~l~--~~~~p~~P  359 (437)
T 4aw2_A          332 GIEDFKKHPFFSGIDWDNIR--NCEAPYIP  359 (437)
T ss_dssp             TTHHHHTSGGGTTCCTTTGG--GSCCSCCC
T ss_pred             CHHHHhCCCccCCCCHHHHh--hCCCCCCC
Confidence            99999999999999999873  33444443

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.98  E-value=1.4e-32  Score=277.46  Aligned_cols=166  Identities=29%  Similarity=0.482  Sum_probs=142.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC----cEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~----~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++    .+||+|||+++..... ......+||+.|+|||++
T Consensus       112 l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~  190 (361)
T 2yab_A          112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG-VEFKNIFGTPEFVAPEIV  190 (361)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTT-CCCCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCC-CccccCCCCccEECchHH
Confidence            57899999999999999999999999999999999998877    7999999999876543 334566899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..|+.++|||||||++|+|++|.+||.+.........+........ .....+++.+++||.+||..||.+||
T Consensus       191 ~~-----~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  265 (361)
T 2yab_A          191 NY-----EPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRL  265 (361)
T ss_dssp             TT-----CCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             cC-----CCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCc
Confidence            76     6789999999999999999999999999887777766665432211 11246799999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPEN  172 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~  172 (488)
                      |+.++++||||+...+.
T Consensus       266 t~~e~l~hp~~~~~~~~  282 (361)
T 2yab_A          266 TIQEALRHPWITPVDTQ  282 (361)
T ss_dssp             CHHHHHTSTTTSCSSHH
T ss_pred             CHHHHhcCcCcCCCchh
Confidence            99999999999977654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.98  E-value=1.4e-32  Score=268.45  Aligned_cols=165  Identities=25%  Similarity=0.505  Sum_probs=132.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+. 
T Consensus        97 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  175 (288)
T 1ob3_A           97 LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS-  175 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCC-
Confidence            5788999999999999999999999999999999999999999999999987654433334456789999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCC-----------------------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGL-----------------------YRASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~-----------------------~~~~~  134 (488)
                         ..++.++|||||||++|+|++|.+||.+........++..   .+....                       .....
T Consensus       176 ---~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (288)
T 1ob3_A          176 ---KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKG  252 (288)
T ss_dssp             ---CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCS
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhh
Confidence               4588999999999999999999999998877666655543   111000                       01134


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      +++.+.+||.+||..||++|||+.++++||||++.
T Consensus       253 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          253 LDESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             cCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence            68899999999999999999999999999999863

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.98  E-value=3.3e-32  Score=270.43  Aligned_cols=164  Identities=36%  Similarity=0.752  Sum_probs=145.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       138 l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  215 (321)
T 2c30_A          138 LNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISR--  215 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcC--
Confidence            578899999999999999999999999999999999999999999999999876554344456789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++||||||+++|+|++|..||...........+.....+.......+++.+.++|.+||..||++|||+.++
T Consensus       216 ---~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el  292 (321)
T 2c30_A          216 ---SLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQEL  292 (321)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence               56889999999999999999999999988877777777766655554556679999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||.+.
T Consensus       293 l~hp~~~~~  301 (321)
T 2c30_A          293 LDHPFLLQT  301 (321)
T ss_dssp             HTSGGGGGC
T ss_pred             hcChhhccC
Confidence            999999754

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.98  E-value=5.1e-32  Score=264.95  Aligned_cols=165  Identities=24%  Similarity=0.454  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+. 
T Consensus        98 l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  176 (292)
T 3o0g_A           98 LDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA-  176 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCC-
Confidence            5789999999999999999999999999999999999999999999999998765444455566899999999999752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCC-CCCChHHHHHHHHh---CCCCC-----------------------CCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPF-EDMHPTRALFQIVR---NPPPG-----------------------LYRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf-~~~~~~~~~~~~~~---~~~~~-----------------------~~~~~  133 (488)
                         ..++.++|||||||++|+|++|..|| .+......+..+..   .+...                       .....
T Consensus       177 ---~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
T 3o0g_A          177 ---KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVP  253 (292)
T ss_dssp             ---SCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTST
T ss_pred             ---CCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhccc
Confidence               44889999999999999999887774 55555554444432   11100                       00123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      .+++.+++||.+||..||++|||++++++||||+++
T Consensus       254 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          254 KLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             TCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             ccChHHHHHHHHHhccChhhCCCHHHHhcCcccccC
Confidence            468899999999999999999999999999999875

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.7e-32  Score=281.50  Aligned_cols=182  Identities=25%  Similarity=0.400  Sum_probs=145.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++....... .....+||+.|+|||++...
T Consensus       159 l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~  238 (412)
T 2vd5_A          159 IPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAV  238 (412)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhc
Confidence            57899999999999999999999999999999999999999999999999986644322 23356899999999998731


Q ss_pred             c--cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCC-CCCCcCHHHHHHHHHhcccCCCCC-
Q psy9090          80 H--KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLY-RASNWSQHYVDFIAECLEKNPEHR-  154 (488)
Q Consensus        80 ~--~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~li~~~L~~dP~~R-  154 (488)
                      .  .....|+.++|||||||++|+|++|++||.+.+......++..... ...+ .+..+|+++++||++||. +|.+| 
T Consensus       239 ~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rl  317 (412)
T 2vd5_A          239 GGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRL  317 (412)
T ss_dssp             HTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCT
T ss_pred             ccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcC
Confidence            0  0114588999999999999999999999999887776666654210 1111 135689999999999999 99998 


Q ss_pred             --CCHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         155 --PYMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       155 --ps~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                        |+++++++||||+.++|+.+..  ..+++.+
T Consensus       318 gr~~~~ei~~Hpff~~i~w~~l~~--~~~p~~p  348 (412)
T 2vd5_A          318 GRGGAGDFRTHPFFFGLDWDGLRD--SVPPFTP  348 (412)
T ss_dssp             TTTTHHHHHTSGGGTTCCSTTSTT--SCCSCCC
T ss_pred             CCCCHHHHhcCCCcCCCCHHHHhh--cCCCCCC
Confidence              5999999999999999998743  3344444

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.98  E-value=2.2e-32  Score=289.14  Aligned_cols=177  Identities=29%  Similarity=0.497  Sum_probs=148.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++............+||+.|+|||++.+  
T Consensus       286 l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~--  363 (543)
T 3c4z_A          286 FQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLG--  363 (543)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTT--
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcC--
Confidence            578999999999999999999999999999999999999999999999999876554334455689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC----hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                         ..|+.++|||||||++|+|++|.+||.+..    .......+.....   ..+..+++.+++||.+||..||.+||+
T Consensus       364 ---~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~lL~~dP~~R~~  437 (543)
T 3c4z_A          364 ---EEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAV---TYPDKFSPASKDFCEALLQKDPEKRLG  437 (543)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             ---CCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhccc---CCCcccCHHHHHHHHHhccCCHhHCCC
Confidence               678999999999999999999999997653    2334444444322   235678999999999999999999996


Q ss_pred             -----HHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         157 -----MSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       157 -----~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                           ++++++||||+.++|..+......+++.+
T Consensus       438 ~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P  471 (543)
T 3c4z_A          438 FRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVP  471 (543)
T ss_dssp             CBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             CcccCHHHHHcCccccCCCHHHHHcCCCCCCCCC
Confidence                 58999999999999987766555556554

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.98  E-value=2.3e-32  Score=271.83  Aligned_cols=170  Identities=25%  Similarity=0.496  Sum_probs=134.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+. 
T Consensus        97 ~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  175 (324)
T 3mtl_A           97 INMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGS-  175 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCC-
Confidence            4788999999999999999999999999999999999999999999999987655443444556789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCC------------------------CCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLY------------------------RAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~------------------------~~~  133 (488)
                         ..++.++|||||||++|+|++|.+||.+.........+..   .+.+..+                        ...
T Consensus       176 ---~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (324)
T 3mtl_A          176 ---TDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAP  252 (324)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCT
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcC
Confidence               4688999999999999999999999998887666555543   1111110                        112


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCcc
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~  174 (488)
                      .+++.+.+||.+||..||.+|||++++++||||.++.+...
T Consensus       253 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  293 (324)
T 3mtl_A          253 RLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIH  293 (324)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCSTTS
T ss_pred             CCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccccc
Confidence            46788999999999999999999999999999998765533

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=1.3e-32  Score=280.56  Aligned_cols=167  Identities=28%  Similarity=0.477  Sum_probs=135.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc---------------------cC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT---------------------FD   59 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~---------------------~~   59 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....                     ..
T Consensus       106 ~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (388)
T 3oz6_A          106 LEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQP  185 (388)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC-----------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccc
Confidence            578889999999999999999999999999999999999999999999999754321                     11


Q ss_pred             ccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC----------
Q psy9090          60 KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL----------  129 (488)
Q Consensus        60 ~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~----------  129 (488)
                      .....+||+.|+|||++.+.    ..|+.++|||||||++|+|++|++||.+......+..+......+.          
T Consensus       186 ~~~~~~gt~~y~aPE~~~~~----~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~  261 (388)
T 3oz6_A          186 ILTDYVATRWYRAPEILLGS----TKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSP  261 (388)
T ss_dssp             ----CCCGGGGCCHHHHTTC----CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCS
T ss_pred             cccCCcccCCcCCHHHhcCC----CCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCH
Confidence            22345899999999999752    5689999999999999999999999999887776666543110000          


Q ss_pred             ----------------------------------CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         130 ----------------------------------YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       130 ----------------------------------~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                                                        ......++++.+||.+||..||.+|||++++++||||+.+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~~~  337 (388)
T 3oz6_A          262 FAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFHN  337 (388)
T ss_dssp             SHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTTCC
T ss_pred             HHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHhcC
Confidence                                              011256889999999999999999999999999999987643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.97  E-value=8.5e-32  Score=279.01  Aligned_cols=163  Identities=31%  Similarity=0.503  Sum_probs=141.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc---cCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~---~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++   .++.+||+|||++..............||+.|+|||++.
T Consensus       107 ~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~  186 (444)
T 3soa_A          107 YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLR  186 (444)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhc
Confidence            57899999999999999999999999999999999998   457899999999987665444445678999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..|+.++|||||||++|+|++|.+||.+.........+...... +......+++.+++||.+||..||.+|||
T Consensus       187 ~-----~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt  261 (444)
T 3soa_A          187 K-----DPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRIT  261 (444)
T ss_dssp             T-----CCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             C-----CCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCC
Confidence            6     57899999999999999999999999998877777777665332 22223567999999999999999999999


Q ss_pred             HHHHhcCcCCCC
Q psy9090         157 MSELLEHPFITS  168 (488)
Q Consensus       157 ~~ell~hp~f~~  168 (488)
                      +.++|+||||+.
T Consensus       262 a~e~L~hp~~~~  273 (444)
T 3soa_A          262 AAEALKHPWISH  273 (444)
T ss_dssp             HHHHHHSCTTHH
T ss_pred             HHHHhcCccccC
Confidence            999999999964

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=3.8e-32  Score=269.40  Aligned_cols=168  Identities=26%  Similarity=0.493  Sum_probs=139.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+. 
T Consensus       105 ~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  183 (317)
T 2pmi_A          105 LELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGS-  183 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCC-
Confidence            4678899999999999999999999999999999999999999999999998765443344556899999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCC----------------------------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGL----------------------------  129 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~----------------------------  129 (488)
                         ..++.++|||||||++|+|++|.+||.+.........+..   .+....                            
T Consensus       184 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (317)
T 2pmi_A          184 ---RTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQP  260 (317)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGG
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcc
Confidence               4588999999999999999999999998887666555532   111000                            


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .....+++.+.+||.+||..||.+|||+.++++||||++..+.
T Consensus       261 ~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          261 HTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHH  303 (317)
T ss_dssp             GCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC-
T ss_pred             cccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccch
Confidence            0112468899999999999999999999999999999986554

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=4.3e-32  Score=277.36  Aligned_cols=169  Identities=25%  Similarity=0.465  Sum_probs=140.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++..... .......||+.|+|||++.+.
T Consensus       138 ~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~  216 (394)
T 4e7w_A          138 MPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG-EPNVSYICSRYYRAPELIFGA  216 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT-CCCCSSCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC-CCCcccccCcCccCHHHHcCC
Confidence            57889999999999999999999999999999999999 7999999999999876443 334456789999999998652


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC-------------------CCCC-------CCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP-------------------PPGL-------YRAS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~-------------------~~~~-------~~~~  133 (488)
                          ..|+.++||||+||++|+|++|++||.+......+..+....                   .+..       ..+.
T Consensus       217 ----~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (394)
T 4e7w_A          217 ----TNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRP  292 (394)
T ss_dssp             ----SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCT
T ss_pred             ----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccc
Confidence                458999999999999999999999999988766666554310                   0000       0123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCcc
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~  174 (488)
                      ..++++.+||.+||..||.+|||+.++++||||+.+.+...
T Consensus       293 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  333 (394)
T 4e7w_A          293 RTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRTGEA  333 (394)
T ss_dssp             TCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTSSCC
T ss_pred             cCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhccccc
Confidence            46889999999999999999999999999999998876543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.97  E-value=6.2e-32  Score=265.12  Aligned_cols=164  Identities=32%  Similarity=0.535  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+..
T Consensus       134 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  213 (298)
T 2zv2_A          134 LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETR  213 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCC
Confidence            57899999999999999999999999999999999999999999999999987654433345568999999999987521


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .  ..++.++|||||||++|+|++|..||.+.........+..... ..+....+++.+.+||.+||..||++|||+.++
T Consensus       214 ~--~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~  290 (298)
T 2zv2_A          214 K--IFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQAL-EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEI  290 (298)
T ss_dssp             C--CEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC-CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             C--CCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccC-CCCCccccCHHHHHHHHHHhhcChhhCCCHHHH
Confidence            0  1136789999999999999999999988776655555544332 223345789999999999999999999999999


Q ss_pred             hcCcCCC
Q psy9090         161 LEHPFIT  167 (488)
Q Consensus       161 l~hp~f~  167 (488)
                      ++||||+
T Consensus       291 l~hp~~~  297 (298)
T 2zv2_A          291 KLHPWVT  297 (298)
T ss_dssp             TTCHHHH
T ss_pred             hcCcccc
Confidence            9999985

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.97  E-value=3.4e-32  Score=271.21  Aligned_cols=168  Identities=26%  Similarity=0.408  Sum_probs=132.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-----cCCcEEEEecCCccccccccCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-----KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-----~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~   75 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++     .++.+||+|||++..............||+.|+|||+
T Consensus       129 ~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~  208 (329)
T 3gbz_A          129 VSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEI  208 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHH
Confidence            57889999999999999999999999999999999994     4556999999999766544344455678999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCCCC---------------------
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGLYR---------------------  131 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~~~---------------------  131 (488)
                      +.+.    ..++.++|||||||++|+|++|.+||.+.........+...   +....+.                     
T Consensus       209 ~~~~----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (329)
T 3gbz_A          209 LLGS----RHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLK  284 (329)
T ss_dssp             HTTC----CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHH
T ss_pred             hcCC----CCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHh
Confidence            9752    45889999999999999999999999988877766666532   1110000                     


Q ss_pred             ---CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         132 ---ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       132 ---~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                         +..+++++++||.+||..||.+|||++++++||||++.+|+
T Consensus       285 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          285 RVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDFD  328 (329)
T ss_dssp             HHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCSC
T ss_pred             hhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCCC
Confidence               01157889999999999999999999999999999998875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.6e-32  Score=274.47  Aligned_cols=160  Identities=28%  Similarity=0.439  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...... ......+||+.|+|||++.+  
T Consensus       105 l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~-~~~~~~~gt~~y~aPE~~~~--  181 (336)
T 3h4j_B          105 MTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVING--  181 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS-BTTCCCTTSTTTSCGGGSCC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC-cccccccCCcCcCCHHHHcC--
Confidence            578999999999999999999999999999999999999999999999999865543 33456689999999999976  


Q ss_pred             cCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..+ ++++|||||||++|+|++|..||.+.........+..   .....+..+|+.+.+||.+||..||.+|||+++
T Consensus       182 ---~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~---~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~e  255 (336)
T 3h4j_B          182 ---KLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNS---CVYVMPDFLSPGAQSLIRRMIVADPMQRITIQE  255 (336)
T ss_dssp             ---SGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCS---SCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             ---CCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHc---CCCCCcccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               333 6799999999999999999999977543222111111   112235567999999999999999999999999


Q ss_pred             HhcCcCCCCC
Q psy9090         160 LLEHPFITSL  169 (488)
Q Consensus       160 ll~hp~f~~~  169 (488)
                      +++||||+..
T Consensus       256 il~hp~~~~~  265 (336)
T 3h4j_B          256 IRRDPWFNVN  265 (336)
T ss_dssp             HTTCHHHHTT
T ss_pred             HHhChhhccC
Confidence            9999999753

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=3.2e-32  Score=288.79  Aligned_cols=177  Identities=27%  Similarity=0.473  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+++..... ......+||+.|+|||++.+  
T Consensus       283 l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~-~~~~~~~GT~~Y~APEvl~~--  359 (576)
T 2acx_A          283 FPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-QTIKGRVGTVGYMAPEVVKN--  359 (576)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT-CCEECCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccC-ccccccCCCccccCHHHHcC--
Confidence            578999999999999999999999999999999999999999999999999876443 23345689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC--
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP--  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp--  155 (488)
                         ..|+.++|||||||++|+|++|.+||.+...   ...+.+.+......  .+..+|+++++||.+||..||.+||  
T Consensus       360 ---~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~--~p~~~s~~~~dLI~~lL~~dP~~R~g~  434 (576)
T 2acx_A          360 ---ERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEE--YSERFSPQARSLCSQLLCKDPAERLGC  434 (576)
T ss_dssp             ---CEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCC--CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             ---CCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhccccc--CCccCCHHHHHHHHHhccCCHHHcCCC
Confidence               5688999999999999999999999977532   23333333322222  3467899999999999999999999  


Q ss_pred             ---CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 ---YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 ---s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                         +++++++||||+.++|..+......+++.+
T Consensus       435 ~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p  467 (576)
T 2acx_A          435 RGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKP  467 (576)
T ss_dssp             SSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             CCCCHHHHHhChhhccCCHHHHhcCCCCCCCCC
Confidence               789999999999999987765555555544

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=1.9e-31  Score=277.90  Aligned_cols=171  Identities=28%  Similarity=0.485  Sum_probs=129.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----------------------   58 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----------------------   58 (488)
                      |++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                      
T Consensus       153 l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (458)
T 3rp9_A          153 LTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPH  232 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccc
Confidence            5789999999999999999999999999999999999999999999999998654221                      


Q ss_pred             -----CccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhc-----------CCCCCCCCCh--------
Q psy9090          59 -----DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-----------GKPPFEDMHP--------  114 (488)
Q Consensus        59 -----~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~ellt-----------g~~Pf~~~~~--------  114 (488)
                           ......+||+.|+|||++...    ..|+.++|||||||++|+|++           |.+||.+...        
T Consensus       233 ~~~~~~~~~~~~gt~~Y~aPE~~~~~----~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~  308 (458)
T 3rp9_A          233 TKNLKRQLTGHVVTRWYRAPELILLQ----ENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQK  308 (458)
T ss_dssp             ------------CCCTTCCHHHHTTC----CCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC------------
T ss_pred             cccccccccCCcccccccChHHhhCC----CCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCcccccccccc
Confidence                 122345789999999987542    568999999999999999998           7777765431        


Q ss_pred             ------------HHHHHHH---HhCCC-------------------CC------CCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090         115 ------------TRALFQI---VRNPP-------------------PG------LYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus       115 ------------~~~~~~~---~~~~~-------------------~~------~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                                  ...+..+   +..+.                   +.      .......++++.+||.+||..||.+|
T Consensus       309 ~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R  388 (458)
T 3rp9_A          309 AGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKR  388 (458)
T ss_dssp             --------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTS
T ss_pred             ccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCcccc
Confidence                        1111111   11100                   00      01124568999999999999999999


Q ss_pred             CCHHHHhcCcCCCCCCCCccc
Q psy9090         155 PYMSELLEHPFITSLPENDLH  175 (488)
Q Consensus       155 ps~~ell~hp~f~~~~~~~~~  175 (488)
                      ||++++|+||||+.+.+....
T Consensus       389 ~t~~e~L~Hp~f~~~~~~~~e  409 (458)
T 3rp9_A          389 ITINECLAHPFFKEVRIAEVE  409 (458)
T ss_dssp             CCHHHHHHSGGGTTTCCGGGC
T ss_pred             CCHHHHhcCHhhhhcCCCccC
Confidence            999999999999998876543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.2e-31  Score=269.20  Aligned_cols=168  Identities=24%  Similarity=0.385  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+. 
T Consensus       109 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  187 (346)
T 1ua2_A          109 LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGA-  187 (346)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCC-
Confidence            4677899999999999999999999999999999999999999999999998765443445566899999999998652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCCC----------------------CCCCc
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGLY----------------------RASNW  135 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~~----------------------~~~~~  135 (488)
                         ..++.++|||||||++|+|++|.+||.+......+.++...   +....+                      ....+
T Consensus       188 ---~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (346)
T 1ua2_A          188 ---RMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAA  264 (346)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTC
T ss_pred             ---CCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccC
Confidence               45889999999999999999999999988877766665531   111000                      01345


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         136 SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       136 s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ++.+++||.+||..||.+|||+.++++||||+..++.
T Consensus       265 ~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~  301 (346)
T 1ua2_A          265 GDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP  301 (346)
T ss_dssp             CHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             CHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCC
Confidence            7899999999999999999999999999999886654

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=4e-32  Score=283.29  Aligned_cols=163  Identities=23%  Similarity=0.464  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..... ......+||+.|+|||++.+  
T Consensus       161 l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  237 (464)
T 3ttj_A          161 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG--  237 (464)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----C-CCC----CCCTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCC-cccCCCcccccccCHHHHcC--
Confidence            578899999999999999999999999999999999999999999999999866543 33456789999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC---------------------CCCC-------C
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP---------------------GLYR-------A  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~---------------------~~~~-------~  132 (488)
                         ..|+.++|||||||++|+|++|++||.+.+....+..++.....                     ....       +
T Consensus       238 ---~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (464)
T 3ttj_A          238 ---MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFP  314 (464)
T ss_dssp             ---CCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSC
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCc
Confidence               57899999999999999999999999998876666655431100                     0000       0


Q ss_pred             CC-----------cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         133 SN-----------WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       133 ~~-----------~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      ..           .++++++||.+||..||++|||++++|+||||+..
T Consensus       315 ~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~  362 (464)
T 3ttj_A          315 DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  362 (464)
T ss_dssp             GGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             ccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhc
Confidence            00           14678999999999999999999999999999853

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=266.75  Aligned_cols=165  Identities=28%  Similarity=0.477  Sum_probs=140.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC----cEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~----~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++    .+||+|||+++..... .......||+.|+|||++
T Consensus       111 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~  189 (326)
T 2y0a_A          111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG-NEFKNIFGTPEFVAPEIV  189 (326)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTT-SCCCCCCSCTTTCCHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCC-CccccccCCcCcCCceee
Confidence            57899999999999999999999999999999999999887    7999999999876433 334456799999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..++.++|||||||++|+|++|..||.+.........+....... ......+++.+++||.+||..||.+||
T Consensus       190 ~~-----~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  264 (326)
T 2y0a_A          190 NY-----EPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM  264 (326)
T ss_dssp             TT-----CCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred             cC-----CCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCC
Confidence            75     578999999999999999999999999888766666665433211 111246789999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPE  171 (488)
Q Consensus       156 s~~ell~hp~f~~~~~  171 (488)
                      |+.++++||||+...+
T Consensus       265 t~~e~l~hp~~~~~~~  280 (326)
T 2y0a_A          265 TIQDSLQHPWIKPKDT  280 (326)
T ss_dssp             CHHHHHHSTTTSCCSH
T ss_pred             CHHHHhcCCCccCCcc
Confidence            9999999999987543

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.1e-32  Score=270.74  Aligned_cols=163  Identities=25%  Similarity=0.413  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc--CCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK--DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~--~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.  ++.+||+|||++...... .......||+.|+|||++.+
T Consensus        99 ~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  177 (321)
T 1tki_A           99 LNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG-DNFRLLFTAPEYYAPEVHQH  177 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-CEEEEEESCGGGSCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC-CccccccCChhhcCcHHhcC
Confidence            578999999999999999999999999999999999987  789999999999876543 33445679999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++|.+||.+.........+........ .....+|+++++||.+||..||.+|||+
T Consensus       178 -----~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~  252 (321)
T 1tki_A          178 -----DVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTA  252 (321)
T ss_dssp             -----CEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCH
Confidence                 5578899999999999999999999999887777777766543211 1124679999999999999999999999


Q ss_pred             HHHhcCcCCCCC
Q psy9090         158 SELLEHPFITSL  169 (488)
Q Consensus       158 ~ell~hp~f~~~  169 (488)
                      .++++||||+..
T Consensus       253 ~e~l~hp~~~~~  264 (321)
T 1tki_A          253 SEALQHPWLKQK  264 (321)
T ss_dssp             HHHHHSHHHHSC
T ss_pred             HHHhcChhhccC
Confidence            999999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=2e-31  Score=265.42  Aligned_cols=169  Identities=33%  Similarity=0.558  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.   ++.+||+|||+++..... .......||+.|+|||++.
T Consensus       128 ~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~  206 (327)
T 3lm5_A          128 VSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA-CELREIMGTPEYLAPEILN  206 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC----------CCCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCc-cccccccCCcCccCCeeec
Confidence            578899999999999999999999999999999999987   789999999999876543 2334567999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++|..||.+.........+..... ........+++.+.+||.+||..||.+|||
T Consensus       207 ~-----~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  281 (327)
T 3lm5_A          207 Y-----DPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPT  281 (327)
T ss_dssp             T-----CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             C-----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcC
Confidence            6     6788999999999999999999999998887766666554322 222234568999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCCccc
Q psy9090         157 MSELLEHPFITSLPENDLH  175 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~~~~  175 (488)
                      ++++++||||+..++..+.
T Consensus       282 ~~~ll~h~~~~~~~~~~~~  300 (327)
T 3lm5_A          282 AEICLSHSWLQQWDFENLF  300 (327)
T ss_dssp             HHHHTTCGGGCCCCTTCC-
T ss_pred             HHHHhCCHhhccccccccc
Confidence            9999999999998887553

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=7.3e-32  Score=271.34  Aligned_cols=163  Identities=26%  Similarity=0.445  Sum_probs=135.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.   +||+|||++.............+||+.|+|||++.
T Consensus       127 ~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~  206 (351)
T 3c0i_A          127 YSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVK  206 (351)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHc
Confidence            478899999999999999999999999999999999987655   99999999987655433345668999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..|+.++|||||||++|+|++|..||.+.. ......+........ .....+++.+++||.+||..||++|||
T Consensus       207 ~-----~~~~~~~DiwslG~il~~ll~g~~pf~~~~-~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  280 (351)
T 3c0i_A          207 R-----EPYGKPVDVWGCGVILFILLSGCLPFYGTK-ERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERIT  280 (351)
T ss_dssp             T-----CCBCTHHHHHHHHHHHHHHHHSSCSSCSSH-HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             C-----CCCCchHhhHHHHHHHHHHHHCCCCCCCcH-HHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcC
Confidence            6     568899999999999999999999998753 344444544332211 112467999999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      +.++++||||+..
T Consensus       281 ~~e~l~hp~~~~~  293 (351)
T 3c0i_A          281 VYEALNHPWLKER  293 (351)
T ss_dssp             HHHHHTSHHHHTH
T ss_pred             HHHHhcChhhcCC
Confidence            9999999999763

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=264.71  Aligned_cols=169  Identities=26%  Similarity=0.466  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++..............||+.|+|||++.+. 
T Consensus        99 ~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  177 (311)
T 4agu_A           99 VPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGD-  177 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcC-
Confidence            5788999999999999999999999999999999999999999999999998765443444566899999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---C------------------CCC--CC-----CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---P------------------PPG--LY-----RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~------------------~~~--~~-----~~  132 (488)
                         ..++.++||||||+++|+|++|.+||.+.........+...   .                  .+.  ..     ..
T Consensus       178 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
T 4agu_A          178 ---TQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKF  254 (311)
T ss_dssp             ---SCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHC
T ss_pred             ---CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhc
Confidence               56789999999999999999999999888766555443321   0                  000  00     01


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCc
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND  173 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~  173 (488)
                      ..+++.+.+||.+||..||.+|||++++++||||+++.+..
T Consensus       255 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~  295 (311)
T 4agu_A          255 PNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIREIE  295 (311)
T ss_dssp             TTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC---
T ss_pred             ccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhccCHH
Confidence            35788999999999999999999999999999999876543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.97  E-value=3e-31  Score=258.76  Aligned_cols=161  Identities=25%  Similarity=0.517  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+||++   +.++.+||+|||++...... .......||+.|+|||++.
T Consensus       121 ~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~  199 (285)
T 3is5_A          121 LSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD-EHSTNAAGTALYMAPEVFK  199 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----------CTTGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCc-ccCcCcccccCcCChHHhc
Confidence            5788999999999999999999999999999999999   45678999999999765443 3344567999999999985


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                            ..++.++||||||+++|+|++|..||.+.......................+++.+.+||.+||..||.+|||+
T Consensus       200 ------~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~  273 (285)
T 3is5_A          200 ------RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSA  273 (285)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCH
T ss_pred             ------cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCH
Confidence                  35788999999999999999999999988876666655554433333345579999999999999999999999


Q ss_pred             HHHhcCcCCCC
Q psy9090         158 SELLEHPFITS  168 (488)
Q Consensus       158 ~ell~hp~f~~  168 (488)
                      .++++||||++
T Consensus       274 ~e~l~hp~f~~  284 (285)
T 3is5_A          274 AQVLHHEWFKQ  284 (285)
T ss_dssp             HHHHTSGGGGC
T ss_pred             HHHhcCHHhhc
Confidence            99999999975

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=1.6e-31  Score=270.12  Aligned_cols=162  Identities=28%  Similarity=0.510  Sum_probs=138.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++   .+||+|||++...... .......||+.|+|||++.
T Consensus       125 ~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~~~  203 (362)
T 2bdw_A          125 YSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS-EAWHGFAGTPGYLSPEVLK  203 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC-CSCCCSCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC-cccccCCCCccccCHHHHc
Confidence            57899999999999999999999999999999999998654   5999999999876543 3344568999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..|+.++|||||||++|+|++|.+||.+.........+...... +......+++.+++||.+||..||.+|||
T Consensus       204 ~-----~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  278 (362)
T 2bdw_A          204 K-----DPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRIT  278 (362)
T ss_dssp             T-----CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             c-----CCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcC
Confidence            6     57899999999999999999999999988877766666654322 11122456999999999999999999999


Q ss_pred             HHHHhcCcCCCC
Q psy9090         157 MSELLEHPFITS  168 (488)
Q Consensus       157 ~~ell~hp~f~~  168 (488)
                      +.++++||||..
T Consensus       279 ~~e~l~hp~~~~  290 (362)
T 2bdw_A          279 ADQALKVPWICN  290 (362)
T ss_dssp             HHHHTTSHHHHT
T ss_pred             HHHHhcCcccCC
Confidence            999999999975

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.97  E-value=4.6e-31  Score=272.97  Aligned_cols=171  Identities=29%  Similarity=0.503  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---------------------   59 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---------------------   59 (488)
                      |++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......                     
T Consensus       126 l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (432)
T 3n9x_A          126 LTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLK  205 (432)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC--------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchh
Confidence            57899999999999999999999999999999999999999999999999986543211                     


Q ss_pred             -ccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcC-----------CCCCCCCCh-------------
Q psy9090          60 -KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG-----------KPPFEDMHP-------------  114 (488)
Q Consensus        60 -~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg-----------~~Pf~~~~~-------------  114 (488)
                       .....+||+.|+|||++...    ..|+.++|||||||++|+|++|           .++|.+...             
T Consensus       206 ~~~~~~~gt~~Y~APE~~~~~----~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~  281 (432)
T 3n9x_A          206 KQLTSHVVTRWYRAPELILLQ----ENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVH  281 (432)
T ss_dssp             -----CCCCCTTCCHHHHTTC----SCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------C
T ss_pred             ccccCCCCCccccCHHHHhcC----CCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCccccccccc
Confidence             13566899999999997542    5689999999999999999984           444444321             


Q ss_pred             ----HHHHHHH---H--------------------hCCCCCCC-----CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy9090         115 ----TRALFQI---V--------------------RNPPPGLY-----RASNWSQHYVDFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       115 ----~~~~~~~---~--------------------~~~~~~~~-----~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  162 (488)
                          ...+..+   +                    ........     ....+++.+.+||.+||..||.+|||++++|+
T Consensus       282 ~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  361 (432)
T 3n9x_A          282 EKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALD  361 (432)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                1111111   1                    11111100     11457999999999999999999999999999


Q ss_pred             CcCCCCCCCCccc
Q psy9090         163 HPFITSLPENDLH  175 (488)
Q Consensus       163 hp~f~~~~~~~~~  175 (488)
                      ||||+++.+....
T Consensus       362 Hp~f~~~~~~~~e  374 (432)
T 3n9x_A          362 HPYLKDVRKKKLE  374 (432)
T ss_dssp             CGGGTTTCCTTTC
T ss_pred             ChhhhhccCcccC
Confidence            9999998876543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.97  E-value=1e-31  Score=263.75  Aligned_cols=172  Identities=40%  Similarity=0.878  Sum_probs=143.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++..............||+.|+|||++....
T Consensus       114 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (302)
T 2j7t_A          114 LTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCET  193 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeecccc
Confidence            57889999999999999999999999999999999999999999999998764332222334567999999999985321


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++||||||+++|+|++|..||...........+.....+....+..++..+.++|.+||..||.+|||+.++
T Consensus       194 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  273 (302)
T 2j7t_A          194 MKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQL  273 (302)
T ss_dssp             TTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             CCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHH
Confidence            12256889999999999999999999999988887777777776655555667789999999999999999999999999


Q ss_pred             hcCcCCCCCCCC
Q psy9090         161 LEHPFITSLPEN  172 (488)
Q Consensus       161 l~hp~f~~~~~~  172 (488)
                      ++||||+.+.+.
T Consensus       274 l~h~~~~~~~~~  285 (302)
T 2j7t_A          274 LEHPFVSSITSN  285 (302)
T ss_dssp             TTSTTTTTCCCC
T ss_pred             hcChHHhhhccc
Confidence            999999987654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=2.8e-31  Score=268.31  Aligned_cols=166  Identities=31%  Similarity=0.547  Sum_probs=136.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++........   ......||+.|+|||++.
T Consensus       125 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  204 (364)
T 3qyz_A          125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIML  204 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhc
Confidence            57889999999999999999999999999999999999999999999999976543321   124558999999999876


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC--------------------CCC-----
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP--------------------PGL-----  129 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~--------------------~~~-----  129 (488)
                      +.    ..++.++|||||||++|+|++|.+||.+......+..+...   +.                    ...     
T Consensus       205 ~~----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (364)
T 3qyz_A          205 NS----KGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWN  280 (364)
T ss_dssp             TB----CSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHH
T ss_pred             CC----CCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHH
Confidence            52    45889999999999999999999999887766555544321   00                    000     


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      .....+++.+.+||.+||..||.+|||+.++++||||+...
T Consensus       281 ~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~  321 (364)
T 3qyz_A          281 RLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY  321 (364)
T ss_dssp             HHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTC
T ss_pred             HhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhcc
Confidence            01245689999999999999999999999999999999863

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.97  E-value=2.1e-31  Score=264.87  Aligned_cols=167  Identities=20%  Similarity=0.365  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....  ........||+.|+|||++.+
T Consensus       102 ~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  181 (323)
T 3tki_A          102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR  181 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhcc
Confidence            578999999999999999999999999999999999999999999999999755322  122345689999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      .    ..++.++|||||||++|+|++|..||.........................+++.+.+||.+||..||.+|||+.
T Consensus       182 ~----~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  257 (323)
T 3tki_A          182 R----EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIP  257 (323)
T ss_dssp             S----SBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             C----CCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHH
Confidence            2    224678999999999999999999998765543333333332222223456799999999999999999999999


Q ss_pred             HHhcCcCCCCCCC
Q psy9090         159 ELLEHPFITSLPE  171 (488)
Q Consensus       159 ell~hp~f~~~~~  171 (488)
                      ++++||||+....
T Consensus       258 eil~h~~~~~~~~  270 (323)
T 3tki_A          258 DIKKDRWYNKPLK  270 (323)
T ss_dssp             HHTTCTTTTCCCC
T ss_pred             HHhhChhhccccc
Confidence            9999999986543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=1.5e-31  Score=268.08  Aligned_cols=163  Identities=27%  Similarity=0.449  Sum_probs=134.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC----CcEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD----GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~----~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||+...    +.+||+|||+++............+||+.|+|||++
T Consensus       113 ~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~  192 (342)
T 2qr7_A          113 FSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVL  192 (342)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHh
Confidence            5789999999999999999999999999999999998543    359999999998765544445567899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC---ChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM---HPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~---~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      .+     ..|+.++|||||||++|+|++|.+||...   ........+....... ...+..+|+.+++||.+||..||+
T Consensus       193 ~~-----~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  267 (342)
T 2qr7_A          193 ER-----QGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPH  267 (342)
T ss_dssp             HH-----HHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTT
T ss_pred             cC-----CCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChh
Confidence            76     45788999999999999999999999753   3444455554443221 112356799999999999999999


Q ss_pred             CCCCHHHHhcCcCCCC
Q psy9090         153 HRPYMSELLEHPFITS  168 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~  168 (488)
                      +|||+.++++||||..
T Consensus       268 ~R~t~~~il~hp~~~~  283 (342)
T 2qr7_A          268 QRLTAALVLRHPWIVH  283 (342)
T ss_dssp             TSCCHHHHTTSHHHHT
T ss_pred             HCcCHHHHhcCCeecC
Confidence            9999999999999964

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=1.7e-31  Score=275.25  Aligned_cols=168  Identities=23%  Similarity=0.424  Sum_probs=137.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-CcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++..++.++.||+.||.|||++||+||||||+|||++.+ +.+||+|||+++..... ......+||+.|+|||++.+.
T Consensus       153 l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~  231 (420)
T 1j1b_A          153 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVSYICSRYYRAPELIFGA  231 (420)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT-CCCCSCCSCTTSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccC-CCceeeeeCCCcCCHHHHcCC
Confidence            5778899999999999999999999999999999999965 56899999999865443 334456899999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---C----------------CCCCC-------CCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---P----------------PPGLY-------RAS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~----------------~~~~~-------~~~  133 (488)
                          ..|+.++|||||||++|+|++|++||.+......+.+++..   +                .+...       .+.
T Consensus       232 ----~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  307 (420)
T 1j1b_A          232 ----TDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRP  307 (420)
T ss_dssp             ----SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCT
T ss_pred             ----CCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCC
Confidence                46899999999999999999999999988776666555431   0                00000       123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCc
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND  173 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~  173 (488)
                      ..++++++||.+||..||.+|||+.++++||||..+.+..
T Consensus       308 ~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~  347 (420)
T 1j1b_A          308 RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPN  347 (420)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCTT
T ss_pred             CCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccccccc
Confidence            4588999999999999999999999999999998765543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=4.4e-31  Score=267.34  Aligned_cols=165  Identities=28%  Similarity=0.534  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....   .....+||+.|+|||++.+. 
T Consensus       125 l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~---~~~~~~~t~~y~aPE~~~~~-  200 (367)
T 1cm8_A          125 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS---EMTGYVVTRWYRAPEVILNW-  200 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS---SCCSSCSCGGGCCTHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeeccccccc---ccCcCcCCCCcCCHHHHhCC-
Confidence            57889999999999999999999999999999999999999999999999986543   23456789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCC--------------------C------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPP--------------------G------LYRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~--------------------~------~~~~  132 (488)
                         ..|+.++||||+||++|+|++|++||.+......+..+...  .++                    .      ....
T Consensus       201 ---~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (367)
T 1cm8_A          201 ---MRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASIL  277 (367)
T ss_dssp             ---TCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTC
T ss_pred             ---CCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHC
Confidence               46889999999999999999999999988776665554321  000                    0      0112


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ...++.+.+||.+||..||.+|||+.++++||||+.+...
T Consensus       278 ~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~  317 (367)
T 1cm8_A          278 TNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT  317 (367)
T ss_dssp             TTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC--
T ss_pred             CCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCC
Confidence            4568999999999999999999999999999999987554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=3.6e-31  Score=265.92  Aligned_cols=167  Identities=25%  Similarity=0.444  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc----cCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT----FDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~----~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....    ........||+.|+|||++
T Consensus       121 ~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  200 (351)
T 3mi9_A          121 FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL  200 (351)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhh
Confidence            578999999999999999999999999999999999999999999999999765421    1223456789999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCCCCC--------------------
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLYRAS--------------------  133 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~~~~--------------------  133 (488)
                      .+.    ..++.++|||||||++|+|++|.+||.+.........+..   ...+......                    
T Consensus       201 ~~~----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
T 3mi9_A          201 LGE----RDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVK  276 (351)
T ss_dssp             TTC----CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHH
T ss_pred             cCC----CCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHH
Confidence            752    4578999999999999999999999998877665555443   2221111100                    


Q ss_pred             ------CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         134 ------NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       134 ------~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                            ..++.+.+||.+||..||++|||++++++||||++.+.
T Consensus       277 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  320 (351)
T 3mi9_A          277 DRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPM  320 (351)
T ss_dssp             HHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSC
T ss_pred             HHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCC
Confidence                  02677899999999999999999999999999987544

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=9.8e-31  Score=259.52  Aligned_cols=167  Identities=26%  Similarity=0.454  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++...... .......||+.|+|||++.+  
T Consensus       117 ~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  193 (326)
T 1blx_A          117 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQ--  193 (326)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCcccccccCC-CCccccccccceeCHHHHhc--
Confidence            578899999999999999999999999999999999999999999999999765433 23345678999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCC---------------------CCCCCCCcC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPP---------------------GLYRASNWS  136 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~---------------------~~~~~~~~s  136 (488)
                         ..++.++|||||||++|+|++|.+||.+.........+...   +..                     .......++
T Consensus       194 ---~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 1blx_A          194 ---SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID  270 (326)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCC
T ss_pred             ---CCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCC
Confidence               56889999999999999999999999988876666655431   000                     001124578


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCc
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEND  173 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~  173 (488)
                      +.+++||.+||..||.+|||+.++++||||+++.+..
T Consensus       271 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          271 ELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhcCccccccchhh
Confidence            9999999999999999999999999999999876543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.4e-31  Score=263.01  Aligned_cols=170  Identities=49%  Similarity=0.970  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++..............||+.|+|||++....
T Consensus       126 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  205 (326)
T 2x7f_A          126 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE  205 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC---
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhcccc
Confidence            57889999999999999999999999999999999999999999999999876654333345567999999999997432


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....++.++|||||||++|+|++|..||...........+.....+.. ....+++.+.+||.+||..||.+|||+.++
T Consensus       206 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  284 (326)
T 2x7f_A          206 NPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPATEQL  284 (326)
T ss_dssp             -----CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SCSCSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccC-CccccCHHHHHHHHHHhccChhhCCCHHHH
Confidence            2235688999999999999999999999998887776666666554433 356789999999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||++.++
T Consensus       285 l~hp~~~~~~~  295 (326)
T 2x7f_A          285 MKHPFIRDQPN  295 (326)
T ss_dssp             HTSHHHHCCTT
T ss_pred             hhChHHhhCcc
Confidence            99999987654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=5.3e-31  Score=260.21  Aligned_cols=167  Identities=43%  Similarity=0.899  Sum_probs=146.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       122 ~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  199 (314)
T 3com_A          122 LTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--  199 (314)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSS--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCC--
Confidence            578899999999999999999999999999999999999999999999999776554344456679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++||||||+++|+|++|..||...........+.....+....+..+++.+.+||.+||..||.+|||+.++
T Consensus       200 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~l  276 (314)
T 3com_A          200 ---IGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQL  276 (314)
T ss_dssp             ---SCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             ---CCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence               56889999999999999999999999988877766666666555555566789999999999999999999999999


Q ss_pred             hcCcCCCCCCCC
Q psy9090         161 LEHPFITSLPEN  172 (488)
Q Consensus       161 l~hp~f~~~~~~  172 (488)
                      ++||||+...+.
T Consensus       277 l~~~~~~~~~~~  288 (314)
T 3com_A          277 LQHPFVRSAKGV  288 (314)
T ss_dssp             TTSHHHHTCCCG
T ss_pred             HhCHHHhcCCcc
Confidence            999999876543

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.97  E-value=4.9e-31  Score=265.12  Aligned_cols=166  Identities=32%  Similarity=0.494  Sum_probs=128.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+++..... .......||+.|+|||++.
T Consensus       145 ~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~  223 (349)
T 2w4o_A          145 YSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ-VLMKTVCGTPGYCAPEILR  223 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-----------------CGGGSCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc-cccccccCCCCccCHHHhc
Confidence            578999999999999999999999999999999999975   889999999998765432 2334567999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHH-HHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF-QIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +     ..++.++|||||||++|+|++|..||.......... .+....... ......++..+++||.+||..||++||
T Consensus       224 ~-----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  298 (349)
T 2w4o_A          224 G-----CAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRL  298 (349)
T ss_dssp             T-----CCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             C-----CCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCc
Confidence            6     568999999999999999999999998766555333 333322211 112356799999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPEN  172 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~  172 (488)
                      |+.++++||||.....+
T Consensus       299 t~~e~l~hp~~~~~~~~  315 (349)
T 2w4o_A          299 TTFQALQHPWVTGKAAN  315 (349)
T ss_dssp             CHHHHHHSTTTTSTTCC
T ss_pred             CHHHHhcCcccCCCccc
Confidence            99999999999876543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=2.7e-31  Score=274.39  Aligned_cols=161  Identities=28%  Similarity=0.449  Sum_probs=133.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc--EEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~--vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.  +||+|||++.....   .....+||+.|+|||++.+
T Consensus       197 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~y~aPE~~~~  273 (429)
T 3kvw_A          197 FSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQ---RVYTYIQSRFYRAPEVILG  273 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTC---CCCSSCSCGGGCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCC---cccccCCCCCccChHHHhC
Confidence            578899999999999999999999999999999999999987  99999999975432   3345689999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCCC----------------------------
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPG----------------------------  128 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~~----------------------------  128 (488)
                           ..|+.++|||||||++|+|++|.+||.+......+..+...  .++.                            
T Consensus       274 -----~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (429)
T 3kvw_A          274 -----ARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLS  348 (429)
T ss_dssp             -----BCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCC
T ss_pred             -----CCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccc
Confidence                 56899999999999999999999999988876665554421  0000                            


Q ss_pred             ------------------CC--------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         129 ------------------LY--------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       129 ------------------~~--------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                                        ..        .+...++.+.+||.+||..||++|||+.++|+||||+..
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~  415 (429)
T 3kvw_A          349 DGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRR  415 (429)
T ss_dssp             C--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC--
T ss_pred             cccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccC
Confidence                              00        011236789999999999999999999999999999874

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=261.89  Aligned_cols=157  Identities=24%  Similarity=0.397  Sum_probs=128.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++...... .......||+.|+|||++.+  
T Consensus       154 l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  230 (311)
T 3p1a_A          154 LPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA-GAGEVQEGDPRYMAPELLQG--  230 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-------CCCCCGGGCCGGGGGT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccC-CCCcccCCCccccCHhHhcC--
Confidence            578999999999999999999999999999999999999999999999998766443 33345579999999999863  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                          .++.++|||||||++|+|++|..|+....   ....+.....+. ..+..+++.+.+||.+||..||++|||+.++
T Consensus       231 ----~~~~~~DiwslG~il~el~~g~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~dP~~Rpt~~el  302 (311)
T 3p1a_A          231 ----SYGTAADVFSLGLTILEVACNMELPHGGE---GWQQLRQGYLPP-EFTAGLSSELRSVLVMMLEPDPKLRATAEAL  302 (311)
T ss_dssp             ----CCSTHHHHHHHHHHHHHHHHTCCCCSSHH---HHHHHTTTCCCH-HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ----CCCchhhHHHHHHHHHHHHhCCCCCCCcc---HHHHHhccCCCc-ccccCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence                58899999999999999999977775532   233333332221 1235679999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      ++||||++
T Consensus       303 l~hp~~~~  310 (311)
T 3p1a_A          303 LALPVLRQ  310 (311)
T ss_dssp             HTSGGGSC
T ss_pred             HhCccccC
Confidence            99999975

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.97  E-value=7.4e-31  Score=265.96  Aligned_cols=165  Identities=27%  Similarity=0.521  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....   ......||+.|+|||++.+. 
T Consensus       141 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~---~~~~~~~t~~y~aPE~~~~~-  216 (371)
T 4exu_A          141 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA---EMTGYVVTRWYRAPEVILSW-  216 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC-----------CTTCCCTTSCHHHHSCC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCccccccc---CcCCcccCccccCHHHhcCC-
Confidence            57899999999999999999999999999999999999999999999999976543   23456789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCC--C--------------------CCCC------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNP--P--------------------PGLY------RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~--~--------------------~~~~------~~  132 (488)
                         ..++.++|||||||++|+|++|..||.+........++....  +                    +...      ..
T Consensus       217 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (371)
T 4exu_A          217 ---MHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLF  293 (371)
T ss_dssp             ---SCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHS
T ss_pred             ---CCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhc
Confidence               468899999999999999999999999887666655554310  0                    0000      12


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ..+++.+.+||.+||..||.+|||+.++++||||+.+...
T Consensus       294 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  333 (371)
T 4exu_A          294 PRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP  333 (371)
T ss_dssp             TTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             cccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCCc
Confidence            3568999999999999999999999999999999987544

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=5.7e-31  Score=265.90  Aligned_cols=162  Identities=27%  Similarity=0.506  Sum_probs=121.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc--EEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~--vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.  +||+|||+++..... .......||+.|+|||++.+
T Consensus       113 ~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  191 (361)
T 3uc3_A          113 FSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-SQPKSTVGTPAYIAPEVLLR  191 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC----------------CTTSCHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc-CCCCCCcCCCCcCChhhhcC
Confidence            578999999999999999999999999999999999987765  999999998754332 23345679999999999976


Q ss_pred             cccCCCCCCCc-cchhhhHHHHHHHhcCCCCCCCCCh----HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCC
Q psy9090          79 GHKEVDGYDNR-IDVWALGITAIELGDGKPPFEDMHP----TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEH  153 (488)
Q Consensus        79 ~~~~~~~~~~~-~DiwslGvil~elltg~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  153 (488)
                           ..++.+ +|||||||++|+|++|+.||.+...    ......+.. .....+....+++.+++||.+||..||.+
T Consensus       192 -----~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~li~~~L~~dP~~  265 (361)
T 3uc3_A          192 -----QEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILS-VKYSIPDDIRISPECCHLISRIFVADPAT  265 (361)
T ss_dssp             -----SSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHT-TCCCCCTTSCCCHHHHHHHHHHSCSCTTT
T ss_pred             -----CCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhc-CCCCCCCcCCCCHHHHHHHHHHccCChhH
Confidence                 445444 8999999999999999999976543    233333333 22233334467999999999999999999


Q ss_pred             CCCHHHHhcCcCCCCC
Q psy9090         154 RPYMSELLEHPFITSL  169 (488)
Q Consensus       154 Rps~~ell~hp~f~~~  169 (488)
                      |||+.++++||||...
T Consensus       266 Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          266 RISIPEIKTHSWFLKN  281 (361)
T ss_dssp             SCCHHHHHTSHHHHTT
T ss_pred             CcCHHHHHhCcchhcC
Confidence            9999999999999653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=5.4e-31  Score=268.35  Aligned_cols=165  Identities=27%  Similarity=0.431  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc--CCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK--DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~--~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.  .+.+||+|||+++..... .......||+.|+|||++.+
T Consensus       146 l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  224 (387)
T 1kob_A          146 MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD-EIVKVTTATAEFAAPEIVDR  224 (387)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT-SCEEEECSSGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCC-cceeeeccCCCccCchhccC
Confidence            578999999999999999999999999999999999974  567999999999876543 23345579999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++|..||.+.........+...... .......+++.+++||.+||..||.+|||+
T Consensus       225 -----~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~  299 (387)
T 1kob_A          225 -----EPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTV  299 (387)
T ss_dssp             -----CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             -----CCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCH
Confidence                 56889999999999999999999999998877777666654322 122335679999999999999999999999


Q ss_pred             HHHhcCcCCCCCCC
Q psy9090         158 SELLEHPFITSLPE  171 (488)
Q Consensus       158 ~ell~hp~f~~~~~  171 (488)
                      .++++||||+....
T Consensus       300 ~ell~hp~~~~~~~  313 (387)
T 1kob_A          300 HDALEHPWLKGDHS  313 (387)
T ss_dssp             HHHHTSTTTSSCCT
T ss_pred             HHHhhCccccCCcc
Confidence            99999999987543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.97  E-value=9.1e-31  Score=254.62  Aligned_cols=165  Identities=28%  Similarity=0.499  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.   +||+|||++...... .......||+.|+|||++.
T Consensus       102 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~  180 (284)
T 3kk8_A          102 YSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS-EAWHGFAGTPGYLSPEVLK  180 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSS-CBCCCSCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccC-ccccCCCCCcCCcCchhhc
Confidence            578899999999999999999999999999999999987665   999999999766543 3334567999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++||||||+++|+|++|..||.+.........+...... +......+++.+.+||.+||..||++|||
T Consensus       181 ~-----~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  255 (284)
T 3kk8_A          181 K-----DPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRIT  255 (284)
T ss_dssp             T-----CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             C-----CCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCC
Confidence            6     56889999999999999999999999988877766666554322 22233567999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCC
Q psy9090         157 MSELLEHPFITSLPE  171 (488)
Q Consensus       157 ~~ell~hp~f~~~~~  171 (488)
                      +.++++||||+...+
T Consensus       256 ~~~~l~h~~~~~~~~  270 (284)
T 3kk8_A          256 ADQALKVPWICNRER  270 (284)
T ss_dssp             HHHHTTSHHHHSCCC
T ss_pred             HHHHhcCccccCChh
Confidence            999999999987544

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=3.4e-31  Score=268.08  Aligned_cols=165  Identities=28%  Similarity=0.522  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....   ......||+.|+|||++.+. 
T Consensus       129 l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~~t~~y~aPE~~~~~-  204 (367)
T 2fst_X          129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTAD---EMTGYVATRWYRAPEIMLNW-  204 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC------------------CCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccccc---cCCCcCcCcCccChHHHcCC-
Confidence            57889999999999999999999999999999999999999999999999976543   23456899999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CC--------------------CCCC------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PP--------------------PGLY------RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~--------------------~~~~------~~  132 (488)
                         ..|+.++|||||||++|+|++|++||.+.+....+..+...  .+                    +...      ..
T Consensus       205 ---~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (367)
T 2fst_X          205 ---MHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF  281 (367)
T ss_dssp             ---CSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHT
T ss_pred             ---cCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHC
Confidence               46889999999999999999999999988776655554431  00                    0000      01


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ...++.+.+||.+||..||.+|||+.++|+||||+.....
T Consensus       282 ~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~  321 (367)
T 2fst_X          282 IGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  321 (367)
T ss_dssp             TTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCG
T ss_pred             CCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCC
Confidence            3457889999999999999999999999999999986543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.8e-31  Score=265.16  Aligned_cols=179  Identities=31%  Similarity=0.511  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-cCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......+||+.|+|||++.+.
T Consensus       156 ~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  235 (355)
T 1vzo_A          156 FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGG  235 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCC
Confidence            578899999999999999999999999999999999999999999999998765322 1233456799999999999752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC----hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                         ...++.++|||||||++|+|++|..||....    .......+.... +.  .+..+++.+.+||.+||..||.+||
T Consensus       236 ---~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~li~~~L~~dP~~R~  309 (355)
T 1vzo_A          236 ---DSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE-PP--YPQEMSALAKDLIQRLLMKDPKKRL  309 (355)
T ss_dssp             ---C---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCC-CC--CCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             ---CCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccC-CC--CCcccCHHHHHHHHHHhhhCHHHhc
Confidence               1357889999999999999999999996432    223333333332 22  3467899999999999999999999


Q ss_pred             -----CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 -----YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 -----s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                           |++++++||||..+.|..+......+++.+
T Consensus       310 ~~~~~s~~ell~h~~f~~~~~~~l~~~~~~~p~~p  344 (355)
T 1vzo_A          310 GCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKP  344 (355)
T ss_dssp             TSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             CCCCCCHHHHHcCcchhcCChhHhhhccCCCCCCC
Confidence                 999999999999999887766665555543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=3.3e-31  Score=271.31  Aligned_cols=163  Identities=28%  Similarity=0.450  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.+++.|+.||+.||.|||++||+||||||+|||++.   ++.+||+|||+++..... ......+||+.|+|||++.
T Consensus       158 l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~  236 (400)
T 1nxk_A          158 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH-NSLTTPCYTPYYVAPEVLG  236 (400)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------------CTTCCGGGSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCC-CccccCCCCCCccCHhhcC
Confidence            578999999999999999999999999999999999997   788999999999865433 3345668999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH----HHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR----ALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~----~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      +     ..|+.++|||||||++|+|++|..||.+.....    ....+..... ........+++++++||.+||..||.
T Consensus       237 ~-----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  311 (400)
T 1nxk_A          237 P-----EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPT  311 (400)
T ss_dssp             C-----CCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGG
T ss_pred             C-----CCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChh
Confidence            5     678999999999999999999999997654321    2223332221 11122356799999999999999999


Q ss_pred             CCCCHHHHhcCcCCCCC
Q psy9090         153 HRPYMSELLEHPFITSL  169 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~~  169 (488)
                      +|||+.++++||||...
T Consensus       312 ~Rpt~~eil~hp~~~~~  328 (400)
T 1nxk_A          312 QRMTITEFMNHPWIMQS  328 (400)
T ss_dssp             GSCCHHHHHHSHHHHTT
T ss_pred             HCcCHHHHhcCccccCC
Confidence            99999999999999753

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=6.7e-31  Score=274.26  Aligned_cols=161  Identities=27%  Similarity=0.470  Sum_probs=139.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...... ....+.+||+.|+|||++.+. 
T Consensus       113 l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~-  190 (476)
T 2y94_A          113 LDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-EFLRTSCGSPNYAAPEVISGR-  190 (476)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTT-CCBCCCCSCSTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccc-ccccccCCCcCeEChhhccCC-
Confidence            578999999999999999999999999999999999999999999999999876543 334566899999999999762 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|||||||++|+|++|..||.+........++.....   ..+..+++.+.+||.+||..||.+|||+.++
T Consensus       191 ---~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~ei  264 (476)
T 2y94_A          191 ---LYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIF---YTPQYLNPSVISLLKHMLQVDPMKRATIKDI  264 (476)
T ss_dssp             ---CBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCC---CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             ---CCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCc---CCCccCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence               2236799999999999999999999998877766666665432   2355679999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||+..
T Consensus       265 l~hp~~~~~  273 (476)
T 2y94_A          265 REHEWFKQD  273 (476)
T ss_dssp             HTCHHHHTT
T ss_pred             HhCHHhhhc
Confidence            999999863

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=2.3e-31  Score=264.91  Aligned_cols=164  Identities=28%  Similarity=0.465  Sum_probs=115.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+++............+||+.|+|||++.
T Consensus       103 ~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~  182 (325)
T 3kn6_A          103 FSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLN  182 (325)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhc
Confidence            57899999999999999999999999999999999998766   799999999986654444455668899999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-------HHHHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhccc
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-------TRALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-------~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~  149 (488)
                      +     ..|+.++|||||||++|+|++|..||.....       ......+.....+.. .....+++++++||.+||..
T Consensus       183 ~-----~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  257 (325)
T 3kn6_A          183 Q-----NGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTV  257 (325)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCC
T ss_pred             C-----CCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCC
Confidence            6     6789999999999999999999999976432       233334433322111 11135799999999999999


Q ss_pred             CCCCCCCHHHHhcCcCCCCC
Q psy9090         150 NPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       150 dP~~Rps~~ell~hp~f~~~  169 (488)
                      ||.+|||+.++++||||+..
T Consensus       258 dP~~Rpt~~ell~h~w~~~~  277 (325)
T 3kn6_A          258 DPNKRLKMSGLRYNEWLQDG  277 (325)
T ss_dssp             CTTTCCCTTTSTTCGGGCTT
T ss_pred             ChhHCCCHHHHhcChhhccC
Confidence            99999999999999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=7.7e-31  Score=262.88  Aligned_cols=166  Identities=24%  Similarity=0.480  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       105 ~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  183 (343)
T 3dbq_A          105 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD  183 (343)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhh
Confidence            57889999999999999999999999999999999997 68899999999986643321  2335679999999999864


Q ss_pred             ccc------CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          79 GHK------EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        79 ~~~------~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      ...      ....++.++|||||||++|+|++|..||...... .....+.. .......+...++.+.+||.+||..||
T Consensus       184 ~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~L~~dp  262 (343)
T 3dbq_A          184 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIID-PNHEIEFPDIPEKDLQDVLKCCLKRDP  262 (343)
T ss_dssp             CC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHC-TTSCCCCCCCSCHHHHHHHHHHTCSST
T ss_pred             ccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhc-CCcccCCcccCCHHHHHHHHHHcCCCh
Confidence            110      1146788999999999999999999999875443 33333332 222333455668899999999999999


Q ss_pred             CCCCCHHHHhcCcCCCC
Q psy9090         152 EHRPYMSELLEHPFITS  168 (488)
Q Consensus       152 ~~Rps~~ell~hp~f~~  168 (488)
                      .+|||+.++++||||+.
T Consensus       263 ~~Rpt~~e~l~hp~~~~  279 (343)
T 3dbq_A          263 KQRISIPELLAHPYVQI  279 (343)
T ss_dssp             TTSCCHHHHHTSHHHHS
T ss_pred             hHCCCHHHHHhCccccc
Confidence            99999999999999974

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=9.7e-31  Score=262.87  Aligned_cols=162  Identities=39%  Similarity=0.792  Sum_probs=140.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....    .....||+.|+|||++.+..
T Consensus       151 l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~----~~~~~gt~~y~aPE~~~~~~  226 (348)
T 1u5q_A          151 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----ANSFVGTPYWMAPEVILAMD  226 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS----BCCCCSCGGGCCHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC----CCcccCCcceeCHhhhcccc
Confidence            57889999999999999999999999999999999999999999999999876543    23567999999999985321


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ...++.++|||||||++|+|++|.+||...........+.....+.. .+..+++.+.+||.+||..||.+|||++++
T Consensus       227 --~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dP~~Rps~~~l  303 (348)
T 1u5q_A          227 --EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVL  303 (348)
T ss_dssp             --SCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence              15688999999999999999999999998887777777776654433 346789999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||...
T Consensus       304 l~h~~~~~~  312 (348)
T 1u5q_A          304 LKHRFVLRE  312 (348)
T ss_dssp             TTCHHHHSC
T ss_pred             hhChhhhcc
Confidence            999999754

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=1e-30  Score=255.36  Aligned_cols=160  Identities=28%  Similarity=0.540  Sum_probs=135.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++|  |+||||||+|||++ .++.+||+|||++.....  .......||+.|+|||++.
T Consensus       126 ~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~t~~y~aPE~~~  203 (290)
T 1t4h_A          126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYE  203 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc--cccccccCCcCcCCHHHHh
Confidence            578899999999999999999999  99999999999997 789999999999865433  2334567999999999886


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                            ..++.++|||||||++|+|++|..||......................+...++.+.+||.+||..||.+|||+
T Consensus       204 ------~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  277 (290)
T 1t4h_A          204 ------EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSI  277 (290)
T ss_dssp             ------TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             ------ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCH
Confidence                  35889999999999999999999999886665555555544433333455668999999999999999999999


Q ss_pred             HHHhcCcCCCC
Q psy9090         158 SELLEHPFITS  168 (488)
Q Consensus       158 ~ell~hp~f~~  168 (488)
                      .++++||||++
T Consensus       278 ~ell~h~~f~~  288 (290)
T 1t4h_A          278 KDLLNHAFFQE  288 (290)
T ss_dssp             HHHHTSGGGC-
T ss_pred             HHHhhCccccc
Confidence            99999999975

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=4.3e-31  Score=269.29  Aligned_cols=169  Identities=30%  Similarity=0.621  Sum_probs=130.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-------CccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-------DKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-------~~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......       .......||+.|+||
T Consensus       125 ~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  204 (389)
T 3gni_B          125 MNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSP  204 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCH
Confidence            5788999999999999999999999999999999999999999999999876432211       122334789999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC--------------------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP--------------------------  127 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~--------------------------  127 (488)
                      |++.+.   ...|+.++|||||||++|+|++|++||.+.........+.....+                          
T Consensus       205 E~~~~~---~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (389)
T 3gni_B          205 EVLQQN---LQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGL  281 (389)
T ss_dssp             HHHSTT---SSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC--------------------------------
T ss_pred             HHHhcc---CCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccccccccccccccccccccccc
Confidence            999752   145889999999999999999999999876554444333221111                          


Q ss_pred             -----------------CCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         128 -----------------GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       128 -----------------~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                                       ....+..+++.+++||.+||..||++|||+.++++||||+.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~~  343 (389)
T 3gni_B          282 SDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRR  343 (389)
T ss_dssp             ------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC---
T ss_pred             ccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhhc
Confidence                             111234568899999999999999999999999999999987653

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=260.11  Aligned_cols=165  Identities=27%  Similarity=0.505  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.....   .....||+.|+|||++.+. 
T Consensus       123 ~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE~~~~~-  198 (353)
T 3coi_A          123 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVILSW-  198 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-----------CCSBCCSCHHHHSCC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCC---ccccccCcCcCCHHHHhCc-
Confidence            578999999999999999999999999999999999999999999999999765432   3455789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---------------------------CCCC-CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---------------------------PPPG-LYRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---------------------------~~~~-~~~~  132 (488)
                         ..++.++|||||||++|+|++|..||.+......+..+...                           ..+. ....
T Consensus       199 ---~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T 3coi_A          199 ---MHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLF  275 (353)
T ss_dssp             ---SCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTC
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhc
Confidence               46788999999999999999999999888766555444321                           0000 0112


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ..+++.+.+||.+||..||.+|||+.++++||||+.....
T Consensus       276 ~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~  315 (353)
T 3coi_A          276 PRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP  315 (353)
T ss_dssp             TTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             CCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccCc
Confidence            4568999999999999999999999999999999876543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=5.3e-31  Score=267.25  Aligned_cols=164  Identities=28%  Similarity=0.454  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE--ccCCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl--~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||+  +.++.+||+|||+++..... .......||+.|+|||++.+
T Consensus       184 l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  262 (373)
T 2x4f_A          184 LTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR-EKLKVNFGTPEFLAPEVVNY  262 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT-CBCCCCCSSCTTCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc-cccccccCCCcEeChhhccC
Confidence            5788999999999999999999999999999999999  56778999999999876543 33445579999999999975


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++|..||.+......+..+....... ......+++++++||.+||..||.+|||+
T Consensus       263 -----~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~  337 (373)
T 2x4f_A          263 -----DFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISA  337 (373)
T ss_dssp             -----CBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             -----CCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCH
Confidence                 568899999999999999999999999988877777777653321 11235679999999999999999999999


Q ss_pred             HHHhcCcCCCCCC
Q psy9090         158 SELLEHPFITSLP  170 (488)
Q Consensus       158 ~ell~hp~f~~~~  170 (488)
                      .++++||||+..+
T Consensus       338 ~e~l~hp~~~~~~  350 (373)
T 2x4f_A          338 SEALKHPWLSDHK  350 (373)
T ss_dssp             HHHHHSHHHHCHH
T ss_pred             HHHhcCcCcCCCc
Confidence            9999999998643

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=5.7e-31  Score=255.66  Aligned_cols=161  Identities=32%  Similarity=0.581  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++.....  .......||+.|+|||++.+  
T Consensus       106 ~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~--~~~~~~~~~~~y~aPE~~~~--  181 (279)
T 3fdn_A          106 FDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTDLCGTLDYLPPEMIEG--  181 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC----------CCCCTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCc--ccccccCCCCCccCHhHhcc--
Confidence            57889999999999999999999999999999999999999999999998865433  23345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++||||||+++|+|++|..||...........+......   .+..+++.+.+||.+||..||.+|||+.++
T Consensus       182 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~e~  255 (279)
T 3fdn_A          182 ---RMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFT---FPDFVTEGARDLISRLLKHNPSQRPMLREV  255 (279)
T ss_dssp             ---CCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCC---CCTTSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ---CCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCC---CCCcCCHHHHHHHHHHhccChhhCCCHHHH
Confidence               56788999999999999999999999988876666666553322   345689999999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||+....
T Consensus       256 l~h~~~~~~~~  266 (279)
T 3fdn_A          256 LEHPWITANSS  266 (279)
T ss_dssp             HHCHHHHHHCS
T ss_pred             hhCccccCCcc
Confidence            99999986543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.7e-31  Score=268.93  Aligned_cols=168  Identities=24%  Similarity=0.423  Sum_probs=126.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE----ccCCcEEEEecCCcccccccc---CccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl----~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aP   73 (488)
                      |++..++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+++......   ......+||+.|+||
T Consensus       125 l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aP  204 (405)
T 3rgf_A          125 LPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAP  204 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCc
Confidence            5788999999999999999999999999999999999    677899999999998654321   223456899999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---------HHHHHHHHh---CCCCCCCC----------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---------TRALFQIVR---NPPPGLYR----------  131 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---------~~~~~~~~~---~~~~~~~~----------  131 (488)
                      |++.+.    ..|+.++|||||||++|+|++|.+||.+...         ...+.++..   .+....+.          
T Consensus       205 E~~~~~----~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~  280 (405)
T 3rgf_A          205 ELLLGA----RHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHST  280 (405)
T ss_dssp             HHHTTC----CSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHH
T ss_pred             hhhcCC----CcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhh
Confidence            999752    4588999999999999999999999976543         123333321   11111000          


Q ss_pred             ----------------------CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         132 ----------------------ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       132 ----------------------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                                            ....++.+.+||.+||..||.+|||++++|+||||...++.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~  343 (405)
T 3rgf_A          281 LMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLP  343 (405)
T ss_dssp             HHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCC
T ss_pred             hhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCC
Confidence                                  01126788999999999999999999999999999886554

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.97  E-value=8.3e-31  Score=260.07  Aligned_cols=166  Identities=29%  Similarity=0.485  Sum_probs=140.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC----cEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~----~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++    .+||+|||++...... .......||+.|+|||++
T Consensus       112 ~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~gt~~y~aPE~~  190 (321)
T 2a2a_A          112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG-VEFKNIFGTPEFVAPEIV  190 (321)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTT-CCCCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCcc-ccccccCCCCCccCcccc
Confidence            46789999999999999999999999999999999999888    7999999999866543 233456799999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..++.++|||||||++|+|++|..||.+.........+........ ..+..+++.+.+||.+||..||.+||
T Consensus       191 ~~-----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  265 (321)
T 2a2a_A          191 NY-----EPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL  265 (321)
T ss_dssp             TT-----CCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSC
T ss_pred             cC-----CCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCc
Confidence            76     5688999999999999999999999998887766666654332111 11246789999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPEN  172 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~  172 (488)
                      |+.++++||||+..++.
T Consensus       266 s~~e~l~hp~~~~~~~~  282 (321)
T 2a2a_A          266 TIQEALRHPWITPVDNQ  282 (321)
T ss_dssp             CHHHHHHSTTTSCSSHH
T ss_pred             CHHHHhcCccccCCCcc
Confidence            99999999999876653

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=8.5e-31  Score=266.62  Aligned_cols=164  Identities=26%  Similarity=0.464  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++..... .......||+.|+|||++.+.
T Consensus       138 l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~  216 (383)
T 3eb0_A          138 IPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS-EPSVAYICSRFYRAPELMLGA  216 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT-SCCCCCCCCSSCCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC-CCCcCcccCCCccCHHHhcCC
Confidence            57889999999999999999999999999999999998 6889999999999866443 334456789999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-------------------CCC-------CCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-------------------PGL-------YRAS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-------------------~~~-------~~~~  133 (488)
                          ..|+.++||||+||++|+|++|++||.+......+.+++....                   +..       ..+.
T Consensus       217 ----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (383)
T 3eb0_A          217 ----TEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPE  292 (383)
T ss_dssp             ----SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCT
T ss_pred             ----CCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCC
Confidence                4589999999999999999999999999887776666653100                   000       0134


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      ..++.+.+||.+||..||.+|||+.++++||||+.+
T Consensus       293 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (383)
T 3eb0_A          293 GTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHL  328 (383)
T ss_dssp             TCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHH
T ss_pred             CCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHH
Confidence            468899999999999999999999999999999865

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=3.6e-31  Score=258.14  Aligned_cols=165  Identities=38%  Similarity=0.662  Sum_probs=127.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++ ||+||||||+||+++.++.+||+|||++...... .......||+.|+|||++...
T Consensus       106 ~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~  184 (290)
T 3fme_A          106 IPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD-VAKDIDAGCKPYMAPERINPE  184 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC----------------CCCCCCSCHHHHSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccccccc-ccccccCCCccccChhhcChh
Confidence            57889999999999999999998 9999999999999999999999999999765443 233445799999999997421


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      . ....++.++||||+||++|+|++|..||... ..............+.. ....+++.+.++|.+||..||++|||+.
T Consensus       185 ~-~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~  262 (290)
T 3fme_A          185 L-NQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYP  262 (290)
T ss_dssp             T-TC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCC-CTTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             h-cCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCc-ccccCCHHHHHHHHHHhhcChhhCcCHH
Confidence            1 1256889999999999999999999999863 44445555555544333 3456899999999999999999999999


Q ss_pred             HHhcCcCCCC
Q psy9090         159 ELLEHPFITS  168 (488)
Q Consensus       159 ell~hp~f~~  168 (488)
                      ++++||||+.
T Consensus       263 e~l~hp~f~~  272 (290)
T 3fme_A          263 ELMQHPFFTL  272 (290)
T ss_dssp             HHTTSHHHHH
T ss_pred             HHHhCccccc
Confidence            9999999975

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=1.1e-30  Score=259.73  Aligned_cols=167  Identities=22%  Similarity=0.395  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+++..... .......||+.|+|||++.+.
T Consensus       127 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~y~aPE~~~~~  205 (330)
T 3nsz_A          127 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-QEYNVRVASRYFKGPELLVDY  205 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT-CCCCSCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC-CccccccccccccChhhhcCC
Confidence            57889999999999999999999999999999999999777 8999999999765443 334456799999999998652


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-hHHHHHHHHh-------------CCCC------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIVR-------------NPPP------------------  127 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-~~~~~~~~~~-------------~~~~------------------  127 (488)
                          ..++.++|||||||++|+|++|..||.... ....+..+..             ....                  
T Consensus       206 ----~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (330)
T 3nsz_A          206 ----QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWE  281 (330)
T ss_dssp             ----CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGG
T ss_pred             ----CcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchh
Confidence                458899999999999999999999995432 2222222111             0000                  


Q ss_pred             ---CCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         128 ---GLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       128 ---~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                         ....+..+++.+.+||.+||..||.+|||++++++||||+++.++
T Consensus       282 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          282 RFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD  329 (330)
T ss_dssp             GGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC--
T ss_pred             hhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhccC
Confidence               000112268999999999999999999999999999999987654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.97  E-value=9.9e-31  Score=266.88  Aligned_cols=167  Identities=23%  Similarity=0.456  Sum_probs=130.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++.......  .....+||+.|+|||++.+
T Consensus       152 ~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  230 (390)
T 2zmd_A          152 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKD  230 (390)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhh
Confidence            46788999999999999999999999999999999995 68999999999986643211  2345679999999999864


Q ss_pred             ccc------CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          79 GHK------EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        79 ~~~------~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      ...      ....|+.++|||||||++|+|++|.+||...... ..+..++.. ......+...++.+.+||.+||..||
T Consensus       231 ~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP  309 (390)
T 2zmd_A          231 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP-NHEIEFPDIPEKDLQDVLKCCLKRDP  309 (390)
T ss_dssp             C------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCT-TSCCCCCCCSCHHHHHHHHHHTCSST
T ss_pred             ccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCc-cccCCCCccchHHHHHHHHHHcccCh
Confidence            211      0135889999999999999999999999875433 333444432 22223345568899999999999999


Q ss_pred             CCCCCHHHHhcCcCCCCC
Q psy9090         152 EHRPYMSELLEHPFITSL  169 (488)
Q Consensus       152 ~~Rps~~ell~hp~f~~~  169 (488)
                      .+|||+.++++||||+..
T Consensus       310 ~~Rps~~ell~hp~~~~~  327 (390)
T 2zmd_A          310 KQRISIPELLAHPYVQIQ  327 (390)
T ss_dssp             TTSCCHHHHHTSHHHHSC
T ss_pred             hhCCCHHHHhhCcCcccc
Confidence            999999999999999753

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.97  E-value=5.7e-31  Score=263.87  Aligned_cols=166  Identities=25%  Similarity=0.469  Sum_probs=134.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE-------------------ccCCcEEEEecCCccccccccCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL-------------------TKDGEVKIVDFGLSRETANTFDKK   61 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl-------------------~~~~~vkL~Dfg~a~~~~~~~~~~   61 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||+                   +.++.+||+|||+++....   ..
T Consensus       120 ~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~---~~  196 (355)
T 2eu9_A          120 YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHE---HH  196 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTS---CC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccc---cc
Confidence            5788999999999999999999999999999999999                   5678999999999976432   23


Q ss_pred             ccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh--CCCCC-----------
Q psy9090          62 KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--NPPPG-----------  128 (488)
Q Consensus        62 ~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~--~~~~~-----------  128 (488)
                      ....||+.|+|||++.+     ..++.++|||||||++|+|++|..||...........+..  ...|.           
T Consensus       197 ~~~~gt~~y~aPE~~~~-----~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  271 (355)
T 2eu9_A          197 TTIVATRHYRPPEVILE-----LGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKY  271 (355)
T ss_dssp             CSSCSCGGGCCHHHHTT-----CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGG
T ss_pred             cCCcCCCcccCCeeeec-----CCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhh
Confidence            45679999999999976     5789999999999999999999999988776554433322  11110           


Q ss_pred             ----------------------------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCcc
Q psy9090         129 ----------------------------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       129 ----------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~  174 (488)
                                                  .......+..+.+||.+||..||++|||+.++++||||+.+.++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~  345 (355)
T 2eu9_A          272 FYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEER  345 (355)
T ss_dssp             EETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCCHHHH
T ss_pred             hcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCChhhc
Confidence                                        0001112457889999999999999999999999999998876543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=4.9e-31  Score=255.84  Aligned_cols=162  Identities=35%  Similarity=0.577  Sum_probs=112.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       109 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  186 (278)
T 3cok_A          109 FSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATR--  186 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcC--
Confidence            578999999999999999999999999999999999999999999999999866543333445679999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||||+++|+|++|..||...........+...   ....+..++.++.++|.+||..||.+|||++++
T Consensus       187 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~  260 (278)
T 3cok_A          187 ---SAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLA---DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSV  260 (278)
T ss_dssp             --------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSS---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhc---ccCCccccCHHHHHHHHHHcccCHhhCCCHHHH
Confidence               56788999999999999999999999876544433332221   222355679999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      ++||||....
T Consensus       261 l~h~~~~~~~  270 (278)
T 3cok_A          261 LDHPFMSRNS  270 (278)
T ss_dssp             TTSTTTC---
T ss_pred             hcCccccCCC
Confidence            9999998644

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=1.2e-30  Score=262.78  Aligned_cols=159  Identities=25%  Similarity=0.416  Sum_probs=130.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-------------------------CCcEEEEecCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-------------------------DGEVKIVDFGLSRETA   55 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-------------------------~~~vkL~Dfg~a~~~~   55 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.                         ++.+||+|||+++...
T Consensus       134 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~  213 (360)
T 3llt_A          134 FHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKS  213 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecC
Confidence            578899999999999999999999999999999999975                         7889999999997644


Q ss_pred             cccCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC------
Q psy9090          56 NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL------  129 (488)
Q Consensus        56 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~------  129 (488)
                      .   ......||+.|+|||++.+     ..|+.++|||||||++|+|++|+.||...........+.....+..      
T Consensus       214 ~---~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~  285 (360)
T 3llt_A          214 D---YHGSIINTRQYRAPEVILN-----LGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYE  285 (360)
T ss_dssp             S---CCCSCCSCGGGCCHHHHTT-----CCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             C---CCcCccCcccccCcHHHcC-----CCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhh
Confidence            3   2345679999999999986     5789999999999999999999999988776655544432111000      


Q ss_pred             -----------------CCC--------------------CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCC
Q psy9090         130 -----------------YRA--------------------SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT  167 (488)
Q Consensus       130 -----------------~~~--------------------~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  167 (488)
                                       ..+                    ...++.+.+||.+||..||.+|||+.++|+||||+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          286 ATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             HTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             hhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence                             000                    01136778999999999999999999999999995

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1e-30  Score=261.55  Aligned_cols=168  Identities=26%  Similarity=0.461  Sum_probs=138.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC--cEEEEecCCccccccccC----ccccccCCCccccchh
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG--EVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEI   75 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~--~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~   75 (488)
                      ++..++.++.||+.||+|||++||+||||||+|||++.++  .+||+|||+++.......    ......||+.|+|||+
T Consensus       166 ~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~  245 (345)
T 3hko_A          166 REKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEV  245 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchh
Confidence            4678899999999999999999999999999999998776  899999999976533211    2345679999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +.+.   ...++.++|||||||++|+|++|..||.+........++....... .+....+++.+.+||.+||..||.+|
T Consensus       246 ~~~~---~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  322 (345)
T 3hko_A          246 LNTT---NESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDER  322 (345)
T ss_dssp             HTCS---SSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTS
T ss_pred             hccC---CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHC
Confidence            8642   2468899999999999999999999999988877777777654322 22233479999999999999999999


Q ss_pred             CCHHHHhcCcCCCCCCCC
Q psy9090         155 PYMSELLEHPFITSLPEN  172 (488)
Q Consensus       155 ps~~ell~hp~f~~~~~~  172 (488)
                      ||+.++++||||+++.+.
T Consensus       323 ps~~~~l~hp~~~~~~~~  340 (345)
T 3hko_A          323 FDAMRALQHPWISQFSDK  340 (345)
T ss_dssp             CCHHHHHHSHHHHTTSSC
T ss_pred             CCHHHHhcChhhccChHh
Confidence            999999999999987654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.97  E-value=8.9e-31  Score=261.73  Aligned_cols=154  Identities=23%  Similarity=0.503  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...... .......||+.|+|||++.+  
T Consensus       127 l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  203 (335)
T 3dls_A          127 LDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERG-KLFYTFCGTIEYCAPEVLMG--  203 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT-CCBCEECSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCCC-CceeccCCCccccChhhhcC--
Confidence            578999999999999999999999999999999999999999999999999866543 33445679999999999976  


Q ss_pred             cCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..+ +.++|||||||++|+|++|..||.....      ...   .....+..+++.+.+||.+||..||.+|||+.+
T Consensus       204 ---~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~~---~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e  271 (335)
T 3dls_A          204 ---NPYRGPELEMWSLGVTLYTLVFEENPFCELEE------TVE---AAIHPPYLVSKELMSLVSGLLQPVPERRTTLEK  271 (335)
T ss_dssp             ---CCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG------GTT---TCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCCCCCcccchhHHHHHHHHHhCCCchhhHHH------HHh---hccCCCcccCHHHHHHHHHHccCChhhCcCHHH
Confidence               344 7889999999999999999999976332      111   122234567999999999999999999999999


Q ss_pred             HhcCcCCCCC
Q psy9090         160 LLEHPFITSL  169 (488)
Q Consensus       160 ll~hp~f~~~  169 (488)
                      +++||||++.
T Consensus       272 ll~hp~~~~~  281 (335)
T 3dls_A          272 LVTDPWVTQP  281 (335)
T ss_dssp             HHHCTTTTCC
T ss_pred             HhcCccccCC
Confidence            9999999863

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=3.7e-31  Score=268.21  Aligned_cols=163  Identities=23%  Similarity=0.451  Sum_probs=126.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       124 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~--  200 (371)
T 2xrw_A          124 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG--  200 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC-----------------CTTCCHHHHTT--
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccccccc-cccCCceecCCccCHHHhcC--
Confidence            578899999999999999999999999999999999999999999999999765432 23345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC---------------------C---------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL---------------------Y---------  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~---------------------~---------  130 (488)
                         ..|+.++|||||||++|+|++|..||.+.+....+..+......+.                     .         
T Consensus       201 ---~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (371)
T 2xrw_A          201 ---MGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFP  277 (371)
T ss_dssp             ---CCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSC
T ss_pred             ---CCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcc
Confidence               5688999999999999999999999998887766666654321110                     0         


Q ss_pred             ---CCC------CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         131 ---RAS------NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       131 ---~~~------~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                         .+.      ..++.+++||.+||..||.+|||++++++||||+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  325 (371)
T 2xrw_A          278 DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  325 (371)
T ss_dssp             GGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             cccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhh
Confidence               000      014678999999999999999999999999999864

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.97  E-value=2.2e-30  Score=250.72  Aligned_cols=166  Identities=20%  Similarity=0.366  Sum_probs=134.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++.......  .......||+.|+|||++.+
T Consensus       102 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (276)
T 2yex_A          102 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR  181 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhc
Confidence            5788999999999999999999999999999999999999999999999987653221  22345678999999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      .    ..++.++|+||||+++|+|++|..||.........................+++.+.+||.+||..||.+|||+.
T Consensus       182 ~----~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  257 (276)
T 2yex_A          182 R----EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIP  257 (276)
T ss_dssp             S----SBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             C----CCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHH
Confidence            2    223678999999999999999999998765432222322222222223456799999999999999999999999


Q ss_pred             HHhcCcCCCCCC
Q psy9090         159 ELLEHPFITSLP  170 (488)
Q Consensus       159 ell~hp~f~~~~  170 (488)
                      ++++||||+...
T Consensus       258 ~il~~~~~~~~~  269 (276)
T 2yex_A          258 DIKKDRWYNKPL  269 (276)
T ss_dssp             HHTTCTTTTCCC
T ss_pred             HHhcCccccChh
Confidence            999999998753

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=1.2e-30  Score=262.54  Aligned_cols=167  Identities=27%  Similarity=0.436  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH--HCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLH--ENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH--~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||  ++||+||||||+|||++. ++.+||+|||+++..... .......||+.|+|||++.
T Consensus       126 ~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~  204 (360)
T 3e3p_A          126 PPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPS-EPNVAYICSRYYRAPELIF  204 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTT-SCCCSTTSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCC-CCcccccCCcceeCHHHHc
Confidence            467889999999999999999  999999999999999996 899999999999876543 3344567899999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC----------------C------------
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG----------------L------------  129 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~----------------~------------  129 (488)
                      +.    ..++.++|||||||++|+|++|.+||.+.........+.+....+                .            
T Consensus       205 ~~----~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
T 3e3p_A          205 GN----QHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVF  280 (360)
T ss_dssp             TC----SSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHT
T ss_pred             CC----CCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCccccc
Confidence            52    458899999999999999999999999888776666654310000                0            


Q ss_pred             -CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         130 -YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       130 -~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                       ......++.+++||.+||..||.+|||+.++++||||+++...
T Consensus       281 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          281 SDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDP  324 (360)
T ss_dssp             TTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCT
T ss_pred             chhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCc
Confidence             0112246789999999999999999999999999999987554

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.97  E-value=2.2e-30  Score=262.04  Aligned_cols=167  Identities=30%  Similarity=0.573  Sum_probs=139.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++...... .......||+.|+|||++.+..
T Consensus       197 l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~  275 (365)
T 2y7j_A          197 LSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPG-EKLRELCGTPGYLAPEILKCSM  275 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT-CCBCCCCSCGGGCCHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccCCC-cccccCCCCCCccChhhccccc
Confidence            578899999999999999999999999999999999999999999999998766543 3345668999999999986521


Q ss_pred             c-CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 K-EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~-~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      . ....++.++|||||||++|+|++|..||...........+....... .+.....++.+.+||.+||..||++|||+.
T Consensus       276 ~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  355 (365)
T 2y7j_A          276 DETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAE  355 (365)
T ss_dssp             CTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             cccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            1 12358889999999999999999999998887766666655543221 112246789999999999999999999999


Q ss_pred             HHhcCcCCCC
Q psy9090         159 ELLEHPFITS  168 (488)
Q Consensus       159 ell~hp~f~~  168 (488)
                      ++++||||+.
T Consensus       356 ell~hp~f~r  365 (365)
T 2y7j_A          356 QALQHPFFER  365 (365)
T ss_dssp             HHHHSGGGCC
T ss_pred             HHhcCcccCC
Confidence            9999999963

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.97  E-value=8.3e-31  Score=266.61  Aligned_cols=162  Identities=29%  Similarity=0.484  Sum_probs=130.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH--HCCCeecccCCCCEEEc--cCCcEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLH--ENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH--~~givHrDlkp~NILl~--~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||.|||  +.||+||||||+|||++  .++.+||+|||+++....   ......||+.|+|||++
T Consensus       154 ~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~---~~~~~~~t~~y~aPE~~  230 (382)
T 2vx3_A          154 VSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQ---RIYQYIQSRFYRSPEVL  230 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTC---CCCSSCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccc---ccccccCCccccChHHH
Confidence            578899999999999999999  57999999999999995  477899999999976643   23456899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CCCCC-------------------------
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PPPGL-------------------------  129 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~~~~-------------------------  129 (488)
                      .+     ..|+.++|||||||++|+|++|++||.+......+..+...  .++..                         
T Consensus       231 ~~-----~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (382)
T 2vx3_A          231 LG-----MPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKT  305 (382)
T ss_dssp             TT-----CCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCC
T ss_pred             cC-----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccc
Confidence            86     56899999999999999999999999988877666555431  00000                         


Q ss_pred             ------CCCCC----------------------------cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         130 ------YRASN----------------------------WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       130 ------~~~~~----------------------------~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                            ..+..                            .++.+++||.+||..||++|||++++|+||||++..
T Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~~  380 (382)
T 2vx3_A          306 KDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTA  380 (382)
T ss_dssp             CTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC--
T ss_pred             cccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccCC
Confidence                  00000                            013789999999999999999999999999998754

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.97  E-value=4.1e-31  Score=260.32  Aligned_cols=162  Identities=20%  Similarity=0.306  Sum_probs=118.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC--------CCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN--------HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~--------givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~   68 (488)
                      ++++.+..++.|++.||+|||++        +||||||||+|||++.++.+||+|||+++.......    .....+||+
T Consensus        97 l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~  176 (303)
T 3hmm_A           97 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK  176 (303)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccc
Confidence            46788999999999999999987        999999999999999999999999999986543321    223458999


Q ss_pred             ccccchhhccccc-CCCCCCCccchhhhHHHHHHHhcCCCCCCCCC--------------hHHHHHHHHh-CC-CCCCC-
Q psy9090          69 SWMAPEIMRCGHK-EVDGYDNRIDVWALGITAIELGDGKPPFEDMH--------------PTRALFQIVR-NP-PPGLY-  130 (488)
Q Consensus        69 ~y~aPE~l~~~~~-~~~~~~~~~DiwslGvil~elltg~~Pf~~~~--------------~~~~~~~~~~-~~-~~~~~-  130 (488)
                      .|+|||++.+... ....|+.++|||||||++|||+||.+||....              ....+.+.+. .. .|..+ 
T Consensus       177 ~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~  256 (303)
T 3hmm_A          177 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPN  256 (303)
T ss_dssp             GGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCG
T ss_pred             cccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCc
Confidence            9999999975211 01246789999999999999999987653211              1122333322 21 12221 


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  162 (488)
                        .....++.+.+|+.+||..||++|||+.++++
T Consensus       257 ~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~  290 (303)
T 3hmm_A          257 RWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence              11123456889999999999999999999986

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.97  E-value=7.3e-31  Score=261.61  Aligned_cols=165  Identities=30%  Similarity=0.543  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+. 
T Consensus       121 ~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-  199 (331)
T 4aaa_A          121 LDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGD-  199 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCC-
Confidence            5788999999999999999999999999999999999999999999999997665443444566799999999999752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---------------------CCCCCC-------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---------------------PPPGLY-------RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---------------------~~~~~~-------~~  132 (488)
                         ..++.++|||||||++|+|++|.+||.+.........+...                     ..+...       ..
T Consensus       200 ---~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
T 4aaa_A          200 ---VKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRY  276 (331)
T ss_dssp             ---TTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHS
T ss_pred             ---CCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcc
Confidence               36889999999999999999999999988776655544321                     000000       12


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      ..+++.+.+||.+||..||.+|||+.++++||||+..
T Consensus       277 ~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  313 (331)
T 4aaa_A          277 PKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMD  313 (331)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGG
T ss_pred             cchhHHHHHHHHHHhccCcccCCCHHHHhcCchhccC
Confidence            3568999999999999999999999999999999753

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=1.9e-30  Score=252.68  Aligned_cols=159  Identities=29%  Similarity=0.524  Sum_probs=137.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++.....  .......|++.|+|||++.+  
T Consensus       111 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~~~y~aPE~~~~--  186 (284)
T 2vgo_A          111 FDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS--LRRRTMCGTLDYLPPEMIEG--  186 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS--SCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcc--cccccccCCCCcCCHHHhcc--
Confidence            57889999999999999999999999999999999999999999999999865543  22345679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||||+++|+|++|..||...........+.....   ..+..++..++++|.+||..||.+|||++++
T Consensus       187 ---~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l  260 (284)
T 2vgo_A          187 ---KTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDL---KFPPFLSDGSKDLISKLLRYHPPQRLPLKGV  260 (284)
T ss_dssp             ---CCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC---CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             ---CCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhcccc---CCCCcCCHHHHHHHHHHhhcCHhhCCCHHHH
Confidence               5678899999999999999999999998877666655554322   2345689999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||+..
T Consensus       261 l~h~~~~~~  269 (284)
T 2vgo_A          261 MEHPWVKAN  269 (284)
T ss_dssp             HTCHHHHHH
T ss_pred             hhCHHHHhh
Confidence            999999754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.97  E-value=1.9e-30  Score=261.58  Aligned_cols=166  Identities=30%  Similarity=0.497  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...... .......||+.|+|||++.+. 
T Consensus       131 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~-  208 (362)
T 3pg1_A          131 ISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTAD-ANKTHYVTHRWYRAPELVMQF-  208 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCTTC----------------CGGGCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEecCcccccccc-cccceecccceecCcHHhcCC-
Confidence            578899999999999999999999999999999999999999999999999754433 233456789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-----------------------CCCCC------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-----------------------PPPGL------YR  131 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-----------------------~~~~~------~~  131 (488)
                         ..++.++|||||||++|+|++|..||.+.........+...                       .....      ..
T Consensus       209 ---~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (362)
T 3pg1_A          209 ---KGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAV  285 (362)
T ss_dssp             ---TTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHH
T ss_pred             ---CCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhh
Confidence               45889999999999999999999999988766655554321                       00000      01


Q ss_pred             CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         132 ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       132 ~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ....++.+.+||.+||..||.+|||+.++++||||+++..
T Consensus       286 ~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  325 (362)
T 3pg1_A          286 VPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFD  325 (362)
T ss_dssp             STTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             CCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccC
Confidence            2345888999999999999999999999999999998743

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.97  E-value=4.2e-30  Score=251.66  Aligned_cols=172  Identities=28%  Similarity=0.521  Sum_probs=140.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++...... .......||+.|+|||++.+..
T Consensus       121 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~  199 (298)
T 1phk_A          121 LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPG-EKLREVCGTPSYLAPEIIECSM  199 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT-CCBCCCCSCGGGCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcCCC-cccccccCCccccCHHHhcccc
Confidence            578899999999999999999999999999999999999999999999999765543 3344567999999999986311


Q ss_pred             c-CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 K-EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~-~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      . ....++.++||||||+++|+|++|..||...........+....... ......+++.+.+||.+||..||.+|||+.
T Consensus       200 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  279 (298)
T 1phk_A          200 NDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAE  279 (298)
T ss_dssp             CTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             ccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHH
Confidence            1 12457889999999999999999999998887766666655543221 122246789999999999999999999999


Q ss_pred             HHhcCcCCCCCCCCc
Q psy9090         159 ELLEHPFITSLPEND  173 (488)
Q Consensus       159 ell~hp~f~~~~~~~  173 (488)
                      ++++||||++..++.
T Consensus       280 ~ll~h~~~~~~~~~~  294 (298)
T 1phk_A          280 EALAHPFFQQYVVEE  294 (298)
T ss_dssp             HHTTSGGGCTTC---
T ss_pred             HHHhChHhhhccchh
Confidence            999999999876554

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.97  E-value=1e-30  Score=258.32  Aligned_cols=171  Identities=26%  Similarity=0.425  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCcccccccc-------CccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTF-------DKKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~~~~~-------~~~~~~~gt~~y   70 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.   +||+|||++.......       ......+||+.|
T Consensus       108 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y  187 (316)
T 2ac3_A          108 FNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEY  187 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCc
Confidence            578899999999999999999999999999999999998776   9999999987543211       112345699999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---------------HHHHHHHHhCCCCCCC--CCC
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---------------TRALFQIVRNPPPGLY--RAS  133 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---------------~~~~~~~~~~~~~~~~--~~~  133 (488)
                      +|||++.........++.++|||||||++|+|++|..||.+...               ......+..... ..+  ...
T Consensus       188 ~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~  266 (316)
T 2ac3_A          188 MAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKY-EFPDKDWA  266 (316)
T ss_dssp             CCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCC-CCCHHHHT
T ss_pred             cChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCc-ccCchhcc
Confidence            99999864211113478899999999999999999999976532               122233333221 111  113


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .+++.+++||.+||..||.+|||+.++++||||+...+.
T Consensus       267 ~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          267 HISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             TSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC-----
T ss_pred             cCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCCCCc
Confidence            578999999999999999999999999999999976543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.97  E-value=2.5e-30  Score=250.66  Aligned_cols=161  Identities=26%  Similarity=0.442  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||++   +.++.+||+|||++...... .......||+.|+|||++.
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~  181 (277)
T 3f3z_A          103 FRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG-KMMRTKVGTPYYVSPQVLE  181 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTT-SCBCCCCSCTTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCc-cchhccCCCCCccChHHhc
Confidence            5788999999999999999999999999999999999   78889999999999766543 3345567999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC-CCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL-YRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +      .++.++||||||+++|+|++|..||...........+........ .....+++.+.+||.+||..||.+|||
T Consensus       182 ~------~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s  255 (277)
T 3f3z_A          182 G------LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRIT  255 (277)
T ss_dssp             T------CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             c------cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcC
Confidence            4      478899999999999999999999999887777777666533211 112357999999999999999999999


Q ss_pred             HHHHhcCcCCCC
Q psy9090         157 MSELLEHPFITS  168 (488)
Q Consensus       157 ~~ell~hp~f~~  168 (488)
                      +.++++||||++
T Consensus       256 ~~~~l~h~~~~~  267 (277)
T 3f3z_A          256 SLQALEHEWFEK  267 (277)
T ss_dssp             HHHHTTSHHHHH
T ss_pred             HHHHhcCHHHhc
Confidence            999999999975

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.97  E-value=2e-30  Score=258.03  Aligned_cols=162  Identities=28%  Similarity=0.497  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-------------------CCcEEEEecCCccccccccCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-------------------DGEVKIVDFGLSRETANTFDKK   61 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-------------------~~~vkL~Dfg~a~~~~~~~~~~   61 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.                   ++.+||+|||+++....   ..
T Consensus       115 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~---~~  191 (339)
T 1z57_A          115 FRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE---HH  191 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTS---CC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcc---cc
Confidence            468899999999999999999999999999999999987                   66899999999876432   23


Q ss_pred             ccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh--CCCCC-----------
Q psy9090          62 KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR--NPPPG-----------  128 (488)
Q Consensus        62 ~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~--~~~~~-----------  128 (488)
                      ....||+.|+|||++.+     ..++.++|||||||++|+|++|..||...........+..  ...+.           
T Consensus       192 ~~~~gt~~y~aPE~~~~-----~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  266 (339)
T 1z57_A          192 STLVSTRHYRAPEVILA-----LGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKY  266 (339)
T ss_dssp             CSSCSCGGGCCHHHHTT-----SCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGG
T ss_pred             ccccCCccccChHHhhC-----CCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhH
Confidence            45679999999999976     5689999999999999999999999988776554433321  11110           


Q ss_pred             ----------------------------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         129 ----------------------------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       129 ----------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                                                  .......++.+.+||.+||..||.+|||+.++++||||+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  336 (339)
T 1z57_A          267 FHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLK  336 (339)
T ss_dssp             EETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGG
T ss_pred             HhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHh
Confidence                                        001112356788999999999999999999999999998754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=3.8e-30  Score=251.75  Aligned_cols=162  Identities=35%  Similarity=0.590  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       112 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  189 (294)
T 2rku_A          112 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSK--  189 (294)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhcc--
Confidence            578899999999999999999999999999999999999999999999999876543344455679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++|+||||+++|+|++|..||...........+.....   ..+..+++.+.++|.+||..||++|||++++
T Consensus       190 ---~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l  263 (294)
T 2rku_A          190 ---KGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY---SIPKHINPVAASLIQKMLQTDPTARPTINEL  263 (294)
T ss_dssp             ---SCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC---CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccC---CCccccCHHHHHHHHHHcccChhhCcCHHHH
Confidence               5678899999999999999999999998876666555554322   2355789999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      ++||||.+..
T Consensus       264 l~~~~~~~~~  273 (294)
T 2rku_A          264 LNDEFFTSGY  273 (294)
T ss_dssp             GGSHHHHTSC
T ss_pred             hhChheecCC
Confidence            9999998654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=4e-30  Score=258.11  Aligned_cols=168  Identities=28%  Similarity=0.487  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----------ccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----------KKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----------~~~~~~gt~~y   70 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++........          ......||+.|
T Consensus       109 ~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  188 (353)
T 2b9h_A          109 LSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWY  188 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccc
Confidence            57889999999999999999999999999999999999999999999999976542211          12235789999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCC--------------------C
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPP--------------------P  127 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~--------------------~  127 (488)
                      +|||++...    ..++.++|||||||++|+|++|.+||.+.........+..   .+.                    +
T Consensus       189 ~aPE~~~~~----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
T 2b9h_A          189 RAPEVMLTS----AKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLP  264 (353)
T ss_dssp             CCHHHHHSC----CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSC
T ss_pred             cCCeeeccC----CCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhccc
Confidence            999988642    5688999999999999999999999998876554443322   110                    0


Q ss_pred             CCC------CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         128 GLY------RASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       128 ~~~------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ...      ....+++.+.+||.+||..||++|||+.++++||||+...+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~  315 (353)
T 2b9h_A          265 MYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDP  315 (353)
T ss_dssp             CCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             CCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCc
Confidence            000      023578999999999999999999999999999999987654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.96  E-value=1.6e-30  Score=267.92  Aligned_cols=166  Identities=28%  Similarity=0.520  Sum_probs=126.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+++..... ......+||+.|+|||++.
T Consensus       236 ~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~  314 (419)
T 3i6u_A          236 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLV  314 (419)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC------------CTTCCTTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCCC-ccccccCCCCCccCceeee
Confidence            57899999999999999999999999999999999997654   4999999999876543 3345678999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCC--CCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY--RASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +..  ...|+.++|||||||++|+|++|.+||............+........  ....+++.+.+||.+||..||.+||
T Consensus       315 ~~~--~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  392 (419)
T 3i6u_A          315 SVG--TAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF  392 (419)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             cCC--CCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCc
Confidence            411  156788999999999999999999999765433223333332221111  1245799999999999999999999


Q ss_pred             CHHHHhcCcCCCCC
Q psy9090         156 YMSELLEHPFITSL  169 (488)
Q Consensus       156 s~~ell~hp~f~~~  169 (488)
                      |++++++||||+..
T Consensus       393 s~~e~l~hp~~~~~  406 (419)
T 3i6u_A          393 TTEEALRHPWLQDE  406 (419)
T ss_dssp             CHHHHHHSGGGCCH
T ss_pred             CHHHHhCCcccCCh
Confidence            99999999999864

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.96  E-value=1.8e-31  Score=271.03  Aligned_cols=156  Identities=17%  Similarity=0.184  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc---
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG---   79 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~---   79 (488)
                      +..++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++....   ......| +.|+|||++.+.   
T Consensus       205 ~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~g-~~y~aPE~~~~~~~~  280 (377)
T 3byv_A          205 HHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA---RVVSSVS-RGFEPPELEARRATI  280 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETTC---EEECCCC-TTCCCHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEechhheecCC---cccCCCC-cCccChhhhcccccc
Confidence            477888999999999999999999999999999999999999999999986432   3345577 999999999762   


Q ss_pred             ---ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          80 ---HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        80 ---~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                         ......|+.++|||||||++|+|++|+.||.+.........+.       .....+++.+.+||.+||..||.+|||
T Consensus       281 ~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~~dp~~Rpt  353 (377)
T 3byv_A          281 SYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIF-------RSCKNIPQPVRALLEGFLRYPKEDRLL  353 (377)
T ss_dssp             HHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSGGGG-------SSCCCCCHHHHHHHHHHTCSSGGGCCC
T ss_pred             cccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchhhhh-------hhccCCCHHHHHHHHHHcCCCchhCCC
Confidence               0000168999999999999999999999997654322211111       123567999999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      +.++++||||+++
T Consensus       354 ~~e~l~hp~f~~~  366 (377)
T 3byv_A          354 PLQAMETPEYEQL  366 (377)
T ss_dssp             HHHHHTSHHHHHH
T ss_pred             HHHHhhChHHHHH
Confidence            9999999999764

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=3.6e-30  Score=254.38  Aligned_cols=168  Identities=33%  Similarity=0.629  Sum_probs=130.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++ |++||||||+||+++.++.+||+|||++...... .......||+.|+|||++...
T Consensus       121 ~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~  199 (318)
T 2dyl_A          121 IPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD-KAKDRSAGCAAYMAPERIDPP  199 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC---------------CCTTCCHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC-ccccccCCCccccChhhcccc
Confidence            57889999999999999999995 9999999999999999999999999998765433 233455799999999999643


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      ......++.++|||||||++|+|++|..||... ........+.....+..+....+++.+.+||.+||..||.+|||+.
T Consensus       200 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  279 (318)
T 2dyl_A          200 DPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYN  279 (318)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             cccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHH
Confidence            222356889999999999999999999999874 4445566666665555544556899999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      ++++||||+..
T Consensus       280 ~ll~h~~~~~~  290 (318)
T 2dyl_A          280 KLLEHSFIKRY  290 (318)
T ss_dssp             HHTTSHHHHHH
T ss_pred             HHhhCHHHHhc
Confidence            99999999754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.96  E-value=3.5e-30  Score=257.29  Aligned_cols=162  Identities=35%  Similarity=0.590  Sum_probs=140.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       138 l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  215 (335)
T 2owb_A          138 LTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSK--  215 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhcc--
Confidence            578899999999999999999999999999999999999999999999999876543344456679999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++||||||+++|+|++|..||...........+.....   ..+..+++.+.+||.+||..||.+|||+.++
T Consensus       216 ---~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~dp~~Rps~~el  289 (335)
T 2owb_A          216 ---KGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY---SIPKHINPVAASLIQKMLQTDPTARPTINEL  289 (335)
T ss_dssp             ---SCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCC---CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred             ---CCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCC---CCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence               5678899999999999999999999998876666655555432   2345689999999999999999999999999


Q ss_pred             hcCcCCCCCC
Q psy9090         161 LEHPFITSLP  170 (488)
Q Consensus       161 l~hp~f~~~~  170 (488)
                      ++||||.+..
T Consensus       290 l~~~~~~~~~  299 (335)
T 2owb_A          290 LNDEFFTSGY  299 (335)
T ss_dssp             GGSHHHHTSC
T ss_pred             hcCccccCCC
Confidence            9999998643

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.96  E-value=5.1e-30  Score=251.97  Aligned_cols=161  Identities=46%  Similarity=0.910  Sum_probs=140.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++..............||+.|+|||++.+  
T Consensus       116 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  193 (303)
T 3a7i_A          116 LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQ--  193 (303)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhc--
Confidence            578899999999999999999999999999999999999999999999999776544334456689999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++||||||+++|+|++|..||...........+.....+.  .+..++..+.+||.+||..||.+|||+.++
T Consensus       194 ---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  268 (303)
T 3a7i_A          194 ---SAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPT--LEGNYSKPLKEFVEACLNKEPSFRPTAKEL  268 (303)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCC--CCSSCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ---CCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCC--CccccCHHHHHHHHHHcCCChhhCcCHHHH
Confidence               567889999999999999999999999888776666665554333  345789999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      ++||||..
T Consensus       269 l~~~~~~~  276 (303)
T 3a7i_A          269 LKHKFILR  276 (303)
T ss_dssp             TTCHHHHH
T ss_pred             hhChhhhc
Confidence            99999965

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.96  E-value=1.6e-31  Score=270.73  Aligned_cols=159  Identities=13%  Similarity=0.197  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccCCCCC
Q psy9090           7 AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGY   86 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~   86 (488)
                      ..++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++.....   .....+|+.|+|||++.+.   ...|
T Consensus       197 ~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~---~~~~  270 (371)
T 3q60_A          197 HILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR---GPASSVPVTYAPREFLNAS---TATF  270 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEETTCSGGGEEECTTSCEEECCGGGEEETTCE---EEGGGSCGGGCCHHHHTCS---EEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCccCcCCHHHEEECCCCCEEEEecceeeecCCC---ccCccCCcCCcChhhccCC---CCCc
Confidence            455699999999999999999999999999999999999999999865432   2245677999999999641   1458


Q ss_pred             CCccchhhhHHHHHHHhcCCCCCCCCChHHHH--HH----HHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          87 DNRIDVWALGITAIELGDGKPPFEDMHPTRAL--FQ----IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        87 ~~~~DiwslGvil~elltg~~Pf~~~~~~~~~--~~----~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      +.++|||||||++|+|++|+.||.+..+....  ..    ..............+++.+.+||.+||..||++|||+.++
T Consensus       271 ~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~  350 (371)
T 3q60_A          271 THALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEA  350 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHH
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence            89999999999999999999999776432100  00    0001111222235779999999999999999999999999


Q ss_pred             hcCcCCCCCCC
Q psy9090         161 LEHPFITSLPE  171 (488)
Q Consensus       161 l~hp~f~~~~~  171 (488)
                      ++||||+++.+
T Consensus       351 l~hp~f~~~~~  361 (371)
T 3q60_A          351 METPEFLQLQN  361 (371)
T ss_dssp             TTSHHHHHHHH
T ss_pred             hcCHHHHHHHH
Confidence            99999987544

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=5.1e-30  Score=252.18  Aligned_cols=162  Identities=29%  Similarity=0.540  Sum_probs=138.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||++   +.++.+||+|||++.....  .......||+.|+|||++.
T Consensus       103 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~~~~y~aPE~~~  180 (304)
T 2jam_A          103 YTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN--GIMSTACGTPGYVAPEVLA  180 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC--BTTHHHHSCCCBCCTTTBS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC--CccccccCCCCccChHHhc
Confidence            5788999999999999999999999999999999999   7788999999999875433  2234457999999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++|..||...........+...... .......+++.+.+||.+||..||.+|||
T Consensus       181 ~-----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  255 (304)
T 2jam_A          181 Q-----KPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYT  255 (304)
T ss_dssp             S-----CSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCC
T ss_pred             c-----CCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcC
Confidence            6     56889999999999999999999999988877766666654322 12234567999999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      +.++++||||...
T Consensus       256 ~~~~l~h~~~~~~  268 (304)
T 2jam_A          256 CEKALSHPWIDGN  268 (304)
T ss_dssp             HHHHHTSHHHHSS
T ss_pred             HHHHhcCccccCC
Confidence            9999999999764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=3.4e-30  Score=252.67  Aligned_cols=168  Identities=42%  Similarity=0.799  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-----CccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-----DKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-----~~~~~~~gt~~y~aPE~   75 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++.......     .......||+.|+|||+
T Consensus       118 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  197 (303)
T 2vwi_A          118 LDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEV  197 (303)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHH
Confidence            4788999999999999999999999999999999999999999999999886543221     12234579999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCC-------CCCCcCHHHHHHHHHhcc
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLY-------RASNWSQHYVDFIAECLE  148 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~li~~~L~  148 (488)
                      +.+.    ..++.++||||||+++|+|++|..||.................+...       ....+++.+.++|.+||.
T Consensus       198 ~~~~----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  273 (303)
T 2vwi_A          198 MEQV----RGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQ  273 (303)
T ss_dssp             HHHH----HCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCC
T ss_pred             hccc----cCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHcc
Confidence            8642    35788999999999999999999999887766555555443322211       134578999999999999


Q ss_pred             cCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         149 KNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       149 ~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .||.+|||+.++++||||++..+.
T Consensus       274 ~dp~~Rps~~~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          274 KDPEKRPTAAELLRHKFFQKAKNK  297 (303)
T ss_dssp             SSGGGSCCHHHHHTSTTC------
T ss_pred             CChhhCcCHHHHhhChhhhcCCCC
Confidence            999999999999999999886554

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=4.5e-30  Score=250.93  Aligned_cols=164  Identities=37%  Similarity=0.720  Sum_probs=130.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++..++.++.||+.||.|||++|++||||||+||+++. ++.+||+|||++..............||+.|+|||++.+..
T Consensus       120 ~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  199 (295)
T 2clq_A          120 NEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGP  199 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGG
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCC
Confidence            57889999999999999999999999999999999987 89999999999976654333345567999999999987521


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH-HHHH-HhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA-LFQI-VRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~-~~~~-~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                         ..++.++||||||+++|+|++|..||........ .... .....+.  .+..+++.+.++|.+||..||++|||+.
T Consensus       200 ---~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~dp~~Rps~~  274 (295)
T 2clq_A          200 ---RGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPE--IPESMSAEAKAFILKCFEPDPDKRACAN  274 (295)
T ss_dssp             ---GGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCC--CCTTSCHHHHHHHHHTTCSSTTTSCCHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccccccc--ccccCCHHHHHHHHHHccCChhhCCCHH
Confidence               2378899999999999999999999976433222 2221 2222222  3467899999999999999999999999


Q ss_pred             HHhcCcCCCCCC
Q psy9090         159 ELLEHPFITSLP  170 (488)
Q Consensus       159 ell~hp~f~~~~  170 (488)
                      ++++||||+...
T Consensus       275 ~ll~~~~~~~~~  286 (295)
T 2clq_A          275 DLLVDEFLKVSS  286 (295)
T ss_dssp             HHHTSGGGCC--
T ss_pred             HHhcChhhhhcc
Confidence            999999998654

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=248.61  Aligned_cols=165  Identities=22%  Similarity=0.375  Sum_probs=138.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++......  ........||+.|+|||++.+
T Consensus       106 ~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  185 (305)
T 2wtk_C          106 FPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANG  185 (305)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccC
Confidence            578899999999999999999999999999999999999999999999999765422  122345578999999999875


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      ..   ..++.++||||||+++|+|++|..||.+.........+.....   ..+..+++.+.+||.+||..||.+|||+.
T Consensus       186 ~~---~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~---~~~~~~~~~l~~li~~~l~~dp~~Rps~~  259 (305)
T 2wtk_C          186 LD---TFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSY---AIPGDCGPPLSDLLKGMLEYEPAKRFSIR  259 (305)
T ss_dssp             CS---CEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCC---CCCSSSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             cc---cCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCC---CCCCccCHHHHHHHHHHccCChhhCCCHH
Confidence            21   2246789999999999999999999998877666666555432   23557899999999999999999999999


Q ss_pred             HHhcCcCCCCCCC
Q psy9090         159 ELLEHPFITSLPE  171 (488)
Q Consensus       159 ell~hp~f~~~~~  171 (488)
                      ++++||||+....
T Consensus       260 ~ll~~~~~~~~~~  272 (305)
T 2wtk_C          260 QIRQHSWFRKKHP  272 (305)
T ss_dssp             HHHHSHHHHSCCC
T ss_pred             HHhcCcccccCCC
Confidence            9999999987544

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=1.8e-30  Score=264.50  Aligned_cols=160  Identities=25%  Similarity=0.451  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCC--------------------------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDG--------------------------------------   41 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~--------------------------------------   41 (488)
                      +++.+++.++.||+.||+|||++ ||+||||||+|||++.++                                      
T Consensus       143 ~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (397)
T 1wak_A          143 LPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLV  222 (397)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccc
Confidence            57889999999999999999998 999999999999998775                                      


Q ss_pred             -----------cEEEEecCCccccccccCccccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCC
Q psy9090          42 -----------EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE  110 (488)
Q Consensus        42 -----------~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~  110 (488)
                                 .+||+|||++......   .....||+.|+|||++.+     ..|+.++|||||||++|+|++|..||.
T Consensus       223 ~~~~~~~~~~~~~kl~DfG~a~~~~~~---~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~il~elltg~~pf~  294 (397)
T 1wak_A          223 NPLEPKNAEKLKVKIADLGNACWVHKH---FTEDIQTRQYRSLEVLIG-----SGYNTPADIWSTACMAFELATGDYLFE  294 (397)
T ss_dssp             CTTSGGGGGGCCEEECCGGGCEETTBC---SCSCCSCGGGCCHHHHHT-----SCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccccccceEecccccccccccc---CccCCCCCcccCChhhcC-----CCCCcHHHHHHHHHHHHHHhhCCCCCC
Confidence                       7999999999765432   345579999999999986     568999999999999999999999997


Q ss_pred             CCCh------HHHHHHH---HhCCCC--------------------CC----------------CCCCCcCHHHHHHHHH
Q psy9090         111 DMHP------TRALFQI---VRNPPP--------------------GL----------------YRASNWSQHYVDFIAE  145 (488)
Q Consensus       111 ~~~~------~~~~~~~---~~~~~~--------------------~~----------------~~~~~~s~~~~~li~~  145 (488)
                      ....      ...+..+   ....+.                    ..                ..+...++.+.+||.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  374 (397)
T 1wak_A          295 PHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLP  374 (397)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGG
T ss_pred             CCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHH
Confidence            5442      1222222   111100                    00                0011224568899999


Q ss_pred             hcccCCCCCCCHHHHhcCcCCCC
Q psy9090         146 CLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                      ||..||++|||+.++|+||||++
T Consensus       375 ~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          375 MLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             GGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             HhccChhhcCCHHHHhhCccccC
Confidence            99999999999999999999974

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.96  E-value=7.6e-30  Score=253.02  Aligned_cols=170  Identities=25%  Similarity=0.439  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......  .......+++.|+|||++.+
T Consensus       134 ~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  213 (323)
T 3qup_A          134 LPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLAD  213 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcC
Confidence            5788999999999999999999999999999999999999999999999997654321  12223456789999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC-
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-  156 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps-  156 (488)
                           ..++.++|||||||++|+|++ |.+||.+.........+.......  .+..+++.+.+||.+||..||.+||| 
T Consensus       214 -----~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~  286 (323)
T 3qup_A          214 -----NLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLK--QPPECMEEVYDLMYQCWSADPKQRPSF  286 (323)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC--CCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             -----CCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCC--CCCccCHHHHHHHHHHccCChhhCcCH
Confidence                 568899999999999999999 999999888777766666554332  35678999999999999999999999 


Q ss_pred             ------HHHHhcCcCCCCCCCCccccc
Q psy9090         157 ------MSELLEHPFITSLPENDLHLS  177 (488)
Q Consensus       157 ------~~ell~hp~f~~~~~~~~~~~  177 (488)
                            +++++.|||+.....+++...
T Consensus       287 ~~l~~~l~~~l~~~~~~~~~~~pl~~~  313 (323)
T 3qup_A          287 TCLRMELENILGHLSVLSTSQDPLYIN  313 (323)
T ss_dssp             HHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCC
Confidence                  677889999988766655433

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=6.5e-30  Score=256.08  Aligned_cols=165  Identities=27%  Similarity=0.448  Sum_probs=136.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||+ +|++||||||+||+++.++.+||+|||++......  ......||+.|+|||++.+.
T Consensus       148 ~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~  225 (348)
T 2pml_X          148 IPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNE  225 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCC
Confidence            5788999999999999999999 99999999999999999999999999999765432  34456799999999999752


Q ss_pred             ccCCCCCCC-ccchhhhHHHHHHHhcCCCCCCCCCh-HHHHHHHHhCCCCCCCC-----------------CCCcCHHHH
Q psy9090          80 HKEVDGYDN-RIDVWALGITAIELGDGKPPFEDMHP-TRALFQIVRNPPPGLYR-----------------ASNWSQHYV  140 (488)
Q Consensus        80 ~~~~~~~~~-~~DiwslGvil~elltg~~Pf~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~s~~~~  140 (488)
                          ..++. ++|||||||++|+|++|..||..... ......+... ....+.                 ...+++.+.
T Consensus       226 ----~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  300 (348)
T 2pml_X          226 ----SSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTK-NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDI  300 (348)
T ss_dssp             ----CCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSC-CCCCCCSSSSSTTTTCC--------CCCHHHH
T ss_pred             ----CCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhcc-CcCCccchhhhhccccccccccchhhcCHHHH
Confidence                24555 89999999999999999999988766 4444444333 222211                 156789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         141 DFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       141 ~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      +||.+||..||.+|||+.++++||||++.++.
T Consensus       301 ~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~~  332 (348)
T 2pml_X          301 DFLKLFLRKNPAERITSEDALKHEWLADTNIE  332 (348)
T ss_dssp             HHHHHHCCSSGGGSCCHHHHHTSGGGTTCCHH
T ss_pred             HHHHHHccCChhhCCCHHHHhcCccccCCCHH
Confidence            99999999999999999999999999987654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=3e-30  Score=260.08  Aligned_cols=166  Identities=30%  Similarity=0.655  Sum_probs=133.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||+. ||+||||||+|||++.++.+||+|||++......  ......||+.|+|||++.+ 
T Consensus       128 ~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~-  204 (360)
T 3eqc_A          128 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQG-  204 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--C----CCCCTTCCHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--cccCCCCCCCeECHHHHcC-
Confidence            47889999999999999999996 9999999999999999999999999998755332  2345679999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHH----------------------------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF----------------------------------------  119 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~----------------------------------------  119 (488)
                          ..++.++|||||||++|+|++|..||..........                                        
T Consensus       205 ----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (360)
T 3eqc_A          205 ----THYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFEL  280 (360)
T ss_dssp             ----CCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHH
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhh
Confidence                568899999999999999999999998765433211                                        


Q ss_pred             --HHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCcc
Q psy9090         120 --QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       120 --~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~  174 (488)
                        .+.....+ ......++..+.+||.+||..||.+|||++++++||||+...++.+
T Consensus       281 ~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~~  336 (360)
T 3eqc_A          281 LDYIVNEPPP-KLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEV  336 (360)
T ss_dssp             HHHHHHSCCC-CCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHHHSCC
T ss_pred             hhHHhccCCC-CCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcchHhhh
Confidence              11122211 1223457899999999999999999999999999999987655544

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.96  E-value=5.1e-30  Score=253.19  Aligned_cols=168  Identities=26%  Similarity=0.456  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-cCCcEEEEecCCcccccccc---CccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++......   .......+|+.|+|||++
T Consensus       117 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (320)
T 2i6l_A          117 LLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLL  196 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHh
Confidence            57889999999999999999999999999999999997 56789999999998654221   123345679999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC---------------------------C
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG---------------------------L  129 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~---------------------------~  129 (488)
                      ...    ..++.++|||||||++|+|++|+.||.+.........+.......                           .
T Consensus       197 ~~~----~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (320)
T 2i6l_A          197 LSP----NNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLT  272 (320)
T ss_dssp             HCT----TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHH
T ss_pred             cCc----ccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChh
Confidence            642    468899999999999999999999999887766555554321100                           0


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .....+++.+++||.+||..||.+|||+.++++||||+..++.
T Consensus       273 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p  315 (320)
T 2i6l_A          273 QLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFP  315 (320)
T ss_dssp             HHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC-
T ss_pred             HhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCc
Confidence            0124578999999999999999999999999999999987654

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.96  E-value=6.2e-30  Score=247.66  Aligned_cols=161  Identities=26%  Similarity=0.441  Sum_probs=128.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++...... .......||+.|+|||++.+. 
T Consensus       108 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~-  185 (276)
T 2h6d_A          108 VEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-EFLRTSCGSPNYAAPEVISGR-  185 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--------------CCTGGGTTS-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCC-cceecccCCccccCHHHHcCC-
Confidence            578899999999999999999999999999999999999999999999998765443 223455789999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ...+.++|+||||+++|+|++|..||...........+.....   ..+..++..+.++|.+||..||.+|||+.++
T Consensus       186 ---~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~  259 (276)
T 2h6d_A          186 ---LYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVF---YIPEYLNRSVATLLMHMLQVDPLKRATIKDI  259 (276)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcc---cCchhcCHHHHHHHHHHccCChhhCCCHHHH
Confidence               2235789999999999999999999988776665555554432   2345678999999999999999999999999


Q ss_pred             hcCcCCCCC
Q psy9090         161 LEHPFITSL  169 (488)
Q Consensus       161 l~hp~f~~~  169 (488)
                      ++||||++.
T Consensus       260 l~h~~~~~~  268 (276)
T 2h6d_A          260 REHEWFKQD  268 (276)
T ss_dssp             HHSHHHHTT
T ss_pred             HhChhhccC
Confidence            999999763

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.96  E-value=3.4e-30  Score=255.82  Aligned_cols=159  Identities=23%  Similarity=0.389  Sum_probs=126.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc------------CccccccCCCc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF------------DKKKTFLGSPS   69 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~------------~~~~~~~gt~~   69 (488)
                      ++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......            .......||+.
T Consensus       162 ~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          162 EHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence            345688999999999999999999999999999999999999999999998654431            12234579999


Q ss_pred             cccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          70 WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        70 y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      |+|||++.+     ..++.++|||||||++|+|++|..|+...  ............+.  .....++.+.+||.+||..
T Consensus       242 y~aPE~~~~-----~~~~~~~Di~slG~il~el~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~  312 (332)
T 3qd2_B          242 YMSPEQIHG-----NNYSHKVDIFSLGLILFELLYSFSTQMER--VRIITDVRNLKFPL--LFTQKYPQEHMMVQDMLSP  312 (332)
T ss_dssp             GSCHHHHHC-----CCCCTHHHHHHHHHHHHHHHSCCCCHHHH--HHHHHHHHTTCCCH--HHHHHCHHHHHHHHHHHCS
T ss_pred             ccChHHhcC-----CCCcchhhHHHHHHHHHHHHHcCCChhHH--HHHHHHhhccCCCc--ccccCChhHHHHHHHHccC
Confidence            999999976     57899999999999999999998775321  12222222222111  1234578889999999999


Q ss_pred             CCCCCCCHHHHhcCcCCCCC
Q psy9090         150 NPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       150 dP~~Rps~~ell~hp~f~~~  169 (488)
                      ||.+|||+.++++||||+++
T Consensus       313 ~p~~Rps~~~~l~~~~f~~~  332 (332)
T 3qd2_B          313 SPTERPEATDIIENAIFENL  332 (332)
T ss_dssp             SGGGSCCHHHHHHSTTCCCC
T ss_pred             CCCcCCCHHHHhhchhhhcC
Confidence            99999999999999999864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=5.9e-30  Score=248.22  Aligned_cols=161  Identities=30%  Similarity=0.501  Sum_probs=136.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-----CeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH-----VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g-----ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~   75 (488)
                      +++..++.++.||+.||.|||++|     |+||||||+||+++.++.+||+|||++..............||+.|+|||+
T Consensus       108 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  187 (279)
T 2w5a_A          108 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQ  187 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHH
Confidence            578899999999999999999999     999999999999999999999999998765443222344578999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +.+     ..++.++||||||+++|+|++|..||...........+.....+.  .+..+++.+.++|.+||..||.+||
T Consensus       188 ~~~-----~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rp  260 (279)
T 2w5a_A          188 MNR-----MSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRR--IPYRYSDELNEIITRMLNLKDYHRP  260 (279)
T ss_dssp             HHC-----C-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             hcc-----CCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhccccc--CCcccCHHHHHHHHHHcCCCcccCC
Confidence            976     568899999999999999999999999888766666666554433  3457899999999999999999999


Q ss_pred             CHHHHhcCcCCCC
Q psy9090         156 YMSELLEHPFITS  168 (488)
Q Consensus       156 s~~ell~hp~f~~  168 (488)
                      |+.++++|+|+..
T Consensus       261 s~~~ll~~~~~~~  273 (279)
T 2w5a_A          261 SVEEILENPLILE  273 (279)
T ss_dssp             CHHHHHTSTTCCG
T ss_pred             CHHHHHhChhhhh
Confidence            9999999999975

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.96  E-value=3.8e-30  Score=250.11  Aligned_cols=165  Identities=28%  Similarity=0.496  Sum_probs=135.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC----cEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~----~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++    .+||+|||++...... .......||+.|+|||++
T Consensus       105 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~  183 (283)
T 3bhy_A          105 LTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAG-NEFKNIFGTPEFVAPEIV  183 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC---------CCCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccCC-CcccccCCCcCccCccee
Confidence            57889999999999999999999999999999999998877    7999999999765443 233455799999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..++.++|+||||+++|+|++|..||.+.........+....... .......++.+.+||.+||..||.+||
T Consensus       184 ~~-----~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  258 (283)
T 3bhy_A          184 NY-----EPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRM  258 (283)
T ss_dssp             TT-----CCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSC
T ss_pred             cC-----CCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCc
Confidence            76     568899999999999999999999999887766655554432211 111246789999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCC
Q psy9090         156 YMSELLEHPFITSLPE  171 (488)
Q Consensus       156 s~~ell~hp~f~~~~~  171 (488)
                      |+.++++||||+.+.+
T Consensus       259 s~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          259 TIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             CHHHHHHCHHHHHHHH
T ss_pred             CHHHHHhCHHHHHHHH
Confidence            9999999999987543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.96  E-value=1.9e-29  Score=244.99  Aligned_cols=156  Identities=20%  Similarity=0.360  Sum_probs=126.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-------------------CcEEEEecCCccccccccCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-------------------GEVKIVDFGLSRETANTFDKK   61 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-------------------~~vkL~Dfg~a~~~~~~~~~~   61 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.+                   ..+||+|||++......    
T Consensus       112 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----  187 (289)
T 1x8b_A          112 FKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP----  187 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCS----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCc----
Confidence            5789999999999999999999999999999999999844                   47999999998765432    


Q ss_pred             ccccCCCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHH
Q psy9090          62 KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVD  141 (488)
Q Consensus        62 ~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  141 (488)
                      ....||+.|+|||++.+.    ..++.++|||||||++|+|++|.+|+....   ....+.....+.  .+..+++.+.+
T Consensus       188 ~~~~gt~~y~aPE~~~~~----~~~~~~~Di~slG~il~~l~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~  258 (289)
T 1x8b_A          188 QVEEGDSRFLANEVLQEN----YTHLPKADIFALALTVVCAAGAEPLPRNGD---QWHEIRQGRLPR--IPQVLSQEFTE  258 (289)
T ss_dssp             CCCCCCGGGCCHHHHTTC----CTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---HHHHHHTTCCCC--CSSCCCHHHHH
T ss_pred             cccCCCccccChhHhcCC----CCCCchhhHHHHHHHHHHHhcCCCCCcchh---HHHHHHcCCCCC--CCcccCHHHHH
Confidence            234689999999999752    356679999999999999999998876543   233444443333  34578999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         142 FIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       142 li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      ||.+||..||.+|||+.++++||||.+.
T Consensus       259 li~~~l~~dp~~Rps~~~ll~h~~~~~~  286 (289)
T 1x8b_A          259 LLKVMIHPDPERRPSAMALVKHSVLLSA  286 (289)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTCTTC---
T ss_pred             HHHHHhCCCcccCCCHHHHhhChHhhhh
Confidence            9999999999999999999999999864

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.96  E-value=2.4e-29  Score=248.36  Aligned_cols=167  Identities=24%  Similarity=0.474  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       124 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  202 (313)
T 3cek_A          124 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD  202 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC--------------CCGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhh
Confidence            46789999999999999999999999999999999996 58999999999976543211  2234578999999999865


Q ss_pred             ccc------CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          79 GHK------EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        79 ~~~------~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      ...      ....++.++||||||+++|+|++|..||...... .....+.. .......+...++.+.++|.+||..||
T Consensus       203 ~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp  281 (313)
T 3cek_A          203 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIID-PNHEIEFPDIPEKDLQDVLKCCLKRDP  281 (313)
T ss_dssp             CC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHC-TTSCCCCCCCSCHHHHHHHHHHTCSST
T ss_pred             cccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHh-cccccCCcccchHHHHHHHHHHccCCc
Confidence            211      0136788999999999999999999999876433 23333332 222223345568999999999999999


Q ss_pred             CCCCCHHHHhcCcCCCCC
Q psy9090         152 EHRPYMSELLEHPFITSL  169 (488)
Q Consensus       152 ~~Rps~~ell~hp~f~~~  169 (488)
                      .+|||+.++++||||+..
T Consensus       282 ~~Rps~~ell~h~~~~~~  299 (313)
T 3cek_A          282 KQRISIPELLAHPYVQIQ  299 (313)
T ss_dssp             TTSCCHHHHHTSHHHHCC
T ss_pred             ccCcCHHHHhcCccccCC
Confidence            999999999999999764

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.96  E-value=1.3e-30  Score=268.04  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=129.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc-
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH-   80 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-   80 (488)
                      ++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....   ....+| +.|+|||++.+.. 
T Consensus       209 ~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~  284 (413)
T 3dzo_A          209 VHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERML  284 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhcccc
Confidence            45678889999999999999999999999999999999999999999998765432   445678 9999999994210 


Q ss_pred             ----cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          81 ----KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        81 ----~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                          .....|+.++|||||||++|+|++|+.||...........+.       .....+|+.+.+||.+||..||.+|||
T Consensus       285 ~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~dP~~Rpt  357 (413)
T 3dzo_A          285 PFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIF-------RSCKNIPQPVRALLEGFLRYPKEDRLL  357 (413)
T ss_dssp             TTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCSGGGG-------SSCCCCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhHHHHH-------hhcccCCHHHHHHHHHHccCChhhCcC
Confidence                012457889999999999999999999998765433222221       123467899999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      +.++++||||+.+
T Consensus       358 ~~~~l~~~~~~~~  370 (413)
T 3dzo_A          358 PLQAMETPEYEQL  370 (413)
T ss_dssp             HHHHTTSHHHHHH
T ss_pred             HHHHHhCHHHHHH
Confidence            9999999999764

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=7.7e-30  Score=253.08  Aligned_cols=166  Identities=30%  Similarity=0.509  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||++...... .......||+.|+|||++.
T Consensus       111 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~gt~~y~aPE~~~  189 (322)
T 2ycf_A          111 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLV  189 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCC-HHHHHHHSCCTTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccc-cccccccCCcCccCchhhc
Confidence            578899999999999999999999999999999999987665   999999999765432 2233457999999999985


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH-HHHHHHhCCCCCCC-CCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR-ALFQIVRNPPPGLY-RASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +..  ...++.++|||||||++|+|++|..||....... ....+........+ ....+++.+.+||.+||..||.+||
T Consensus       190 ~~~--~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp  267 (322)
T 2ycf_A          190 SVG--TAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARF  267 (322)
T ss_dssp             HTT--TTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             cCC--CCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCC
Confidence            311  1568899999999999999999999997654322 22223332221111 1245789999999999999999999


Q ss_pred             CHHHHhcCcCCCCC
Q psy9090         156 YMSELLEHPFITSL  169 (488)
Q Consensus       156 s~~ell~hp~f~~~  169 (488)
                      |+.++++||||+..
T Consensus       268 s~~~~l~h~~~~~~  281 (322)
T 2ycf_A          268 TTEEALRHPWLQDE  281 (322)
T ss_dssp             CHHHHHTSGGGCCH
T ss_pred             CHHHHhhCcCcCCH
Confidence            99999999999864

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.96  E-value=3.3e-29  Score=247.46  Aligned_cols=162  Identities=30%  Similarity=0.580  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||+|||++|  |+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+
T Consensus       134 ~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~  213 (309)
T 3p86_A          134 LDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRD  213 (309)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcC
Confidence            578899999999999999999999  999999999999999999999999999765444334456689999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                           ..++.++|||||||++|+|++|..||...........+..... ....+..+++.+.+||.+||..||.+|||+.
T Consensus       214 -----~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~  287 (309)
T 3p86_A          214 -----EPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCK-RLEIPRNLNPQVAAIIEGCWTNEPWKRPSFA  287 (309)
T ss_dssp             -----CCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCC-CCCCCccCCHHHHHHHHHHccCChhhCcCHH
Confidence                 5688999999999999999999999998887666655543322 2234567899999999999999999999999


Q ss_pred             HHhc--CcCCCC
Q psy9090         159 ELLE--HPFITS  168 (488)
Q Consensus       159 ell~--hp~f~~  168 (488)
                      ++++  ++++++
T Consensus       288 ~ll~~L~~~~~~  299 (309)
T 3p86_A          288 TIMDLLRPLIKS  299 (309)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHh
Confidence            9987  455543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.96  E-value=1.2e-29  Score=247.49  Aligned_cols=164  Identities=32%  Similarity=0.564  Sum_probs=137.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC---CcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~---~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.+   +.+||+|||++...... .......||+.|+|||++.
T Consensus       118 ~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~  196 (287)
T 2wei_A          118 FSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLR  196 (287)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCC-SSCSCHHHHHTTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCC-CccccccCcccccChHHhc
Confidence            5788999999999999999999999999999999999764   46999999998765443 2334456899999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +      .++.++|+||||+++|+|++|..||.+.........+...... .......+++.+.++|.+||..||.+|||
T Consensus       197 ~------~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  270 (287)
T 2wei_A          197 G------TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRIT  270 (287)
T ss_dssp             T------CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             C------CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcC
Confidence            4      4789999999999999999999999988877666666654332 22223567999999999999999999999


Q ss_pred             HHHHhcCcCCCCCCC
Q psy9090         157 MSELLEHPFITSLPE  171 (488)
Q Consensus       157 ~~ell~hp~f~~~~~  171 (488)
                      +.++++||||++..+
T Consensus       271 ~~ell~hp~~~~~~~  285 (287)
T 2wei_A          271 ATQCLEHPWIQKYSS  285 (287)
T ss_dssp             HHHHHHSHHHHHHCC
T ss_pred             HHHHhcCHHHhcccc
Confidence            999999999986544

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=1.4e-29  Score=255.96  Aligned_cols=162  Identities=21%  Similarity=0.360  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEcc------CCcEEEEecCCccccccccCccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTK------DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~------~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||++ ||+||||||+|||++.      .+.+||+|||++......   .....||+.|+||
T Consensus       128 ~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aP  204 (373)
T 1q8y_A          128 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSP  204 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCC---CCCCCCCccccCc
Confidence            57889999999999999999998 9999999999999953      347999999999765432   3445789999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh------HHHHHHHHh--CCCCC-----------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP------TRALFQIVR--NPPPG-----------------  128 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~------~~~~~~~~~--~~~~~-----------------  128 (488)
                      |++.+     ..++.++|||||||++|+|++|..||.....      ...+.++..  +..|.                 
T Consensus       205 E~~~~-----~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  279 (373)
T 1q8y_A          205 EVLLG-----APWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRG  279 (373)
T ss_dssp             HHHHT-----CCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--
T ss_pred             HHHhC-----CCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcc
Confidence            99986     5689999999999999999999999975431      222222211  10000                 


Q ss_pred             --------------------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         129 --------------------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       129 --------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                                          ...+...++.+.+||.+||..||.+|||+.++++||||++..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  341 (373)
T 1q8y_A          280 LLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  341 (373)
T ss_dssp             CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             hhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhccc
Confidence                                001123457789999999999999999999999999998753

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.96  E-value=1.7e-29  Score=250.66  Aligned_cols=155  Identities=26%  Similarity=0.500  Sum_probs=130.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||++......  ......||+.|+|||++.+.
T Consensus       146 l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~  223 (320)
T 3a99_A          146 LQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYH  223 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccc--cccCCCCCccCCChHHhccC
Confidence            57889999999999999999999999999999999999 7899999999999766532  33456799999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.++|||||||++|+|++|..||....      .+....   ...+..+++.+.+||.+||..||.+|||+++
T Consensus       224 ----~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~  290 (320)
T 3a99_A          224 ----RYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ---VFFRQRVSSECQHLIRWCLALRPSDRPTFEE  290 (320)
T ss_dssp             ----CBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCC---CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ----CCCCccchHHhHHHHHHHHHHCCCCCCChh------hhhccc---ccccccCCHHHHHHHHHHccCChhhCcCHHH
Confidence                223678999999999999999999997632      122221   1234568999999999999999999999999


Q ss_pred             HhcCcCCCCCC
Q psy9090         160 LLEHPFITSLP  170 (488)
Q Consensus       160 ll~hp~f~~~~  170 (488)
                      +++||||++..
T Consensus       291 ll~hp~~~~~~  301 (320)
T 3a99_A          291 IQNHPWMQDVL  301 (320)
T ss_dssp             HHTSGGGSSCC
T ss_pred             HhcCHhhcCcc
Confidence            99999998764

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.96  E-value=8.4e-30  Score=263.36  Aligned_cols=166  Identities=23%  Similarity=0.398  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---C--CcEEEEecCCcccccccc---CccccccCCCccccch
Q psy9090           3 EQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---D--GEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPE   74 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~--~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE   74 (488)
                      +.+++.++.||+.||.|||++||+||||||+|||++.   +  ..+||+|||+++......   .......||+.|+|||
T Consensus       117 ~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE  196 (432)
T 3p23_A          117 GLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPE  196 (432)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGG
T ss_pred             chhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChh
Confidence            3456789999999999999999999999999999953   2  358899999997654321   2234567999999999


Q ss_pred             hhcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          75 IMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        75 ~l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      ++.+..  ...++.++|||||||++|+|++ |.+||........ ......... ........+..+++||.+||..||.
T Consensus       197 ~l~~~~--~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  273 (432)
T 3p23_A          197 MLSEDC--KENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA-NILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQ  273 (432)
T ss_dssp             GTSCC-----CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH-HHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGG
T ss_pred             hhhccc--ccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH-HHHhccCCccccCccccccHHHHHHHHHHHhCCHh
Confidence            997421  1457789999999999999999 9999976554332 223222221 1222233466789999999999999


Q ss_pred             CCCCHHHHhcCcCCCCCCC
Q psy9090         153 HRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~~~~  171 (488)
                      +|||+.++++||||+.+.+
T Consensus       274 ~Rps~~evl~hp~f~~~~~  292 (432)
T 3p23_A          274 KRPSAKHVLKHPFFWSLEK  292 (432)
T ss_dssp             GSCCHHHHHTSTTTCCHHH
T ss_pred             hCCCHHHHHhCccccChHH
Confidence            9999999999999987654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.96  E-value=5.7e-30  Score=255.93  Aligned_cols=161  Identities=29%  Similarity=0.473  Sum_probs=109.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||++.....  .......||+.|+|||++.
T Consensus       125 l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~t~~y~aPE~~~  202 (336)
T 3fhr_A          125 FTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ--NALQTPCYTPYYVAPEVLG  202 (336)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccc--cccccCCCCcCccChhhhC
Confidence            578899999999999999999999999999999999986   44599999999976543  2334567899999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHH---hCC--CCCCCCCCCcCHHHHHHHHHhcccCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV---RNP--PPGLYRASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~---~~~--~~~~~~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      +     ..++.++|||||||++|+|++|..||.............   ...  ..+......+++.+++||.+||..||.
T Consensus       203 ~-----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  277 (336)
T 3fhr_A          203 P-----EKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPT  277 (336)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGG
T ss_pred             C-----CCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChh
Confidence            5     567889999999999999999999997655433211111   111  111122346799999999999999999


Q ss_pred             CCCCHHHHhcCcCCCC
Q psy9090         153 HRPYMSELLEHPFITS  168 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~  168 (488)
                      +|||+.++++||||+.
T Consensus       278 ~Rpt~~ell~hp~~~~  293 (336)
T 3fhr_A          278 ERLTITQFMNHPWINQ  293 (336)
T ss_dssp             GSCCHHHHHHSHHHHT
T ss_pred             HCcCHHHHhcCccccc
Confidence            9999999999999976

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.96  E-value=1.1e-29  Score=250.79  Aligned_cols=164  Identities=27%  Similarity=0.502  Sum_probs=132.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......   .......||+.|+|||++.
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  192 (311)
T 3ork_A          113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR  192 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhc
Confidence            5788999999999999999999999999999999999999999999999997654321   1233457899999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++|..||.+........+....... .......+++.+.++|.+||..||.+||+
T Consensus       193 ~-----~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~  267 (311)
T 3ork_A          193 G-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQ  267 (311)
T ss_dssp             T-----CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCS
T ss_pred             C-----CCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChh
Confidence            6     57889999999999999999999999998877776666654322 22224568999999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      ..+++.|+|++..
T Consensus       268 ~~~~l~~~l~~~~  280 (311)
T 3ork_A          268 TAAEMRADLVRVH  280 (311)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            9999999998743

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.96  E-value=2.9e-29  Score=249.40  Aligned_cols=170  Identities=36%  Similarity=0.661  Sum_probs=114.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC-CCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN-HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.|++.||.|||++ ||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||++...
T Consensus       122 ~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~  200 (327)
T 3aln_A          122 IPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS-IAKTRDAGCRPYMAPERIDPS  200 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecccc-cccccCCCCccccCceeeccc
Confidence            47889999999999999999999 9999999999999999999999999999766443 223344799999999998431


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCC--CCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLY--RASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      . ....++.++|||||||++|+|++|..||...... .....+.....+...  ....+++.+.+||.+||..||.+|||
T Consensus       201 ~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  279 (327)
T 3aln_A          201 A-SRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPK  279 (327)
T ss_dssp             ------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             c-CcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcC
Confidence            1 1156889999999999999999999999875432 112222222222211  12457899999999999999999999


Q ss_pred             HHHHhcCcCCCCCCCC
Q psy9090         157 MSELLEHPFITSLPEN  172 (488)
Q Consensus       157 ~~ell~hp~f~~~~~~  172 (488)
                      +.++++||||....+.
T Consensus       280 ~~ell~hp~~~~~~~~  295 (327)
T 3aln_A          280 YKELLKHPFILMYEER  295 (327)
T ss_dssp             HHHHTTSHHHHHHHHS
T ss_pred             HHHHHhChHHHHhHhh
Confidence            9999999999765443

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.96  E-value=1.1e-28  Score=250.10  Aligned_cols=156  Identities=27%  Similarity=0.473  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......  .......+|+.|+|||++.+
T Consensus       200 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  279 (370)
T 2psq_A          200 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFD  279 (370)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcC
Confidence            4678899999999999999999999999999999999999999999999998654321  12234467889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|+|++ |..||.+.........+.....+.  .+..+++.+.++|.+||..||.+|||+
T Consensus       280 -----~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rpt~  352 (370)
T 2psq_A          280 -----RVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMD--KPANCTNELYMMMRDCWHAVPSQRPTF  352 (370)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence                 678999999999999999999 999999887666655555543332  356789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       353 ~ell~~  358 (370)
T 2psq_A          353 KQLVED  358 (370)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999863

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.96  E-value=1.1e-28  Score=241.39  Aligned_cols=162  Identities=22%  Similarity=0.410  Sum_probs=122.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--------------cCccccccCC
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--------------FDKKKTFLGS   67 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--------------~~~~~~~~gt   67 (488)
                      ++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......              ........||
T Consensus       114 ~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (303)
T 1zy4_A          114 QRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGT  193 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCc
Confidence            57889999999999999999999999999999999999999999999998765321              1122345789


Q ss_pred             CccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC--CCCCCCcCHHHHHHHHH
Q psy9090          68 PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG--LYRASNWSQHYVDFIAE  145 (488)
Q Consensus        68 ~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~li~~  145 (488)
                      +.|+|||++.+.    ..++.++|||||||++|+|++   ||............+......  ...+...++.++++|.+
T Consensus       194 ~~y~aPE~~~~~----~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  266 (303)
T 1zy4_A          194 AMYVATEVLDGT----GHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRL  266 (303)
T ss_dssp             CTTSCHHHHTSC----SCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHH
T ss_pred             ccccCcccccCC----CCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccccccccCccccccchHHHHHHHHH
Confidence            999999998752    468899999999999999998   554332222223333322111  11234567889999999


Q ss_pred             hcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         146 CLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      ||..||.+|||+.++++||||+...
T Consensus       267 ~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          267 LIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             HHhcCcccCcCHHHHhCCCCcCCCC
Confidence            9999999999999999999997643

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.4e-29  Score=246.67  Aligned_cols=164  Identities=20%  Similarity=0.476  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE----ccCCcEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl----~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+++..... .......||+.|+|||++
T Consensus       109 ~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~  187 (319)
T 4euu_A          109 LPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD-EQFVSLYGTEEYLHPDMY  187 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTT-CCBCCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCC-CceeecccCCCccCHHHh
Confidence            5788999999999999999999999999999999999    77888999999999876543 334456799999999998


Q ss_pred             cccc---cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC----hHHHHHHHHhCCCCC------------------CCC
Q psy9090          77 RCGH---KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH----PTRALFQIVRNPPPG------------------LYR  131 (488)
Q Consensus        77 ~~~~---~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~----~~~~~~~~~~~~~~~------------------~~~  131 (488)
                      ....   .....++.++|||||||++|+|++|..||....    ....+..+....++.                  .+.
T Consensus       188 ~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
T 4euu_A          188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (319)
T ss_dssp             HHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             hhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCc
Confidence            6310   012568899999999999999999999996432    234445554433211                  111


Q ss_pred             ----CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcC
Q psy9090         132 ----ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPF  165 (488)
Q Consensus       132 ----~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~  165 (488)
                          ...+++.+.+||.+||..||++|||++++++||-
T Consensus       268 ~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             ccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence                1223567889999999999999999999999864

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.95  E-value=1e-28  Score=245.53  Aligned_cols=156  Identities=23%  Similarity=0.367  Sum_probs=129.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       112 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (325)
T 3kex_A          112 LGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHF  191 (325)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhcc
Confidence            46788999999999999999999999999999999999999999999999986543211  2244567889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+......  ..+..++..+.++|.+||..||.+|||+
T Consensus       192 -----~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~  264 (325)
T 3kex_A          192 -----GKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERL--AQPQICTIDVYMVMVKCWMIDENIRPTF  264 (325)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBC--CCCTTBCTTTTHHHHHHTCSCTTTSCCH
T ss_pred             -----CCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCC--CCCCcCcHHHHHHHHHHcCCChhhCcCH
Confidence                 568999999999999999999 99999887766655555544322  2345678899999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       265 ~el~~~  270 (325)
T 3kex_A          265 KELANE  270 (325)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=4.1e-29  Score=244.05  Aligned_cols=157  Identities=19%  Similarity=0.367  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccC-------ccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFD-------KKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y   70 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||+++.......       ......||+.|
T Consensus       102 ~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y  181 (296)
T 4hgt_A          102 FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARY  181 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccc
Confidence            5789999999999999999999999999999999999   7899999999999986543211       22356799999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---HHHHHHHhC--CCCCCCCCCCcCHHHHHHHHH
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---RALFQIVRN--PPPGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---~~~~~~~~~--~~~~~~~~~~~s~~~~~li~~  145 (488)
                      +|||++.+     ..++.++|||||||++|+|++|+.||.+....   .....+...  ..+.......+++.+.++|.+
T Consensus       182 ~aPE~~~~-----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  256 (296)
T 4hgt_A          182 ASINTHLG-----IEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNF  256 (296)
T ss_dssp             CCHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHH
T ss_pred             cchHHhcC-----CCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHH
Confidence            99999986     56889999999999999999999999764321   112222111  011111225678999999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q psy9090         146 CLEKNPEHRPYMSELLE  162 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~  162 (488)
                      ||..||++|||+.++++
T Consensus       257 ~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          257 CRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHTSCTTCCCCHHHHHH
T ss_pred             HHhcCCCCCCCHHHHHH
Confidence            99999999999999875

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.95  E-value=6.4e-29  Score=249.90  Aligned_cols=157  Identities=28%  Similarity=0.492  Sum_probs=129.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  269 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD  269 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcC
Confidence            4688999999999999999999999999999999999999999999999997653321  12344568899999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+..........+..... ...+..+++.+.++|.+||..||.+|||+
T Consensus       270 -----~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~  343 (359)
T 3vhe_A          270 -----RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR-MRAPDYTTPEMYQTMLDCWHGEPSQRPTF  343 (359)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHccCChhhCCCH
Confidence                 678999999999999999998 99999887654444444432221 22356689999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .++++|
T Consensus       344 ~ell~~  349 (359)
T 3vhe_A          344 SELVEH  349 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.1e-29  Score=251.07  Aligned_cols=160  Identities=26%  Similarity=0.459  Sum_probs=134.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC---cEEEEecCCccccccc--cCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~   75 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.+|   .+||+|||+++.....  ........||+.|+|||+
T Consensus       178 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~  257 (367)
T 3l9p_A          178 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEA  257 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHH
Confidence            46788999999999999999999999999999999999655   4999999999754322  123345578999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +.+     ..++.++|||||||++|+|++ |..||...........+.......  .+..+++.+.+||.+||..||.+|
T Consensus       258 ~~~-----~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~R  330 (367)
T 3l9p_A          258 FME-----GIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD--PPKNCPGPVYRIMTQCWQHQPEDR  330 (367)
T ss_dssp             HHH-----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             hcC-----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCccCCHHHHHHHHHHcCCCHhHC
Confidence            976     578999999999999999998 999999988777666666554332  356789999999999999999999


Q ss_pred             CCHHHHhcCcCCC
Q psy9090         155 PYMSELLEHPFIT  167 (488)
Q Consensus       155 ps~~ell~hp~f~  167 (488)
                      ||+.+++++.++.
T Consensus       331 ps~~eil~~l~~~  343 (367)
T 3l9p_A          331 PNFAIILERIEYC  343 (367)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999987764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.95  E-value=1.5e-28  Score=240.86  Aligned_cols=162  Identities=21%  Similarity=0.428  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....... .......||+.|+|||++.+ 
T Consensus       108 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-  186 (294)
T 4eqm_A          108 LSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKG-  186 (294)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcC-
Confidence            5788999999999999999999999999999999999999999999999997654321 22344579999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC--CCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL--YRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                          ..++.++||||||+++|+|++|+.||.+........+......+..  ..+..+++.+.++|.+||..||.+||+.
T Consensus       187 ----~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~  262 (294)
T 4eqm_A          187 ----EATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKT  262 (294)
T ss_dssp             ----CCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSS
T ss_pred             ----CCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHcccc
Confidence                5678899999999999999999999999887776666666544332  1245689999999999999999999955


Q ss_pred             HHHhcCcCCC
Q psy9090         158 SELLEHPFIT  167 (488)
Q Consensus       158 ~ell~hp~f~  167 (488)
                      .+.+.+.|..
T Consensus       263 ~~~l~~~l~~  272 (294)
T 4eqm_A          263 IQEMKDDLSS  272 (294)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.95  E-value=1.4e-28  Score=239.19  Aligned_cols=156  Identities=24%  Similarity=0.438  Sum_probs=122.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....... ......+|+.|+|||++.+ 
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  191 (281)
T 1mp8_A          113 LDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF-  191 (281)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhccc-
Confidence            47889999999999999999999999999999999999999999999999976543211 2233456789999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |.+||.+.........+.......  .+..+++.+.++|.+||..||.+|||+.
T Consensus       192 ----~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rps~~  265 (281)
T 1mp8_A          192 ----RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP--MPPNCPPTLYSLMTKCWAYDPSRRPRFT  265 (281)
T ss_dssp             ----CCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence                568899999999999999996 999999887776666666544332  3567899999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       266 ~l~~~  270 (281)
T 1mp8_A          266 ELKAQ  270 (281)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99863

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.95  E-value=1e-28  Score=255.56  Aligned_cols=162  Identities=25%  Similarity=0.461  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC-------------CcEEEEecCCccccccccC----ccccccCC
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-------------GEVKIVDFGLSRETANTFD----KKKTFLGS   67 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~-------------~~vkL~Dfg~a~~~~~~~~----~~~~~~gt   67 (488)
                      .++.++.||+.||+|||++||+||||||+|||++.+             +.+||+|||+++.......    ......||
T Consensus       116 ~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt  195 (434)
T 2rio_A          116 NPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGT  195 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------C
T ss_pred             hHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCC
Confidence            457799999999999999999999999999999754             4799999999987654321    12345799


Q ss_pred             Cccccchhhccccc--CCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCC--CC--CCCCCcCHHHH
Q psy9090          68 PSWMAPEIMRCGHK--EVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPP--GL--YRASNWSQHYV  140 (488)
Q Consensus        68 ~~y~aPE~l~~~~~--~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~--~~--~~~~~~s~~~~  140 (488)
                      +.|+|||++.+...  ....++.++|||||||++|+|++ |..||.......  ..+......  ..  .....+++++.
T Consensus       196 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~  273 (434)
T 2rio_A          196 SGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE--SNIIRGIFSLDEMKCLHDRSLIAEAT  273 (434)
T ss_dssp             CTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH--HHHHHTCCCCCCCTTCCCHHHHHHHH
T ss_pred             CCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH--HHHhcCCCCcccccccccccchHHHH
Confidence            99999999965211  12468899999999999999999 999997665433  233332211  11  11223468899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         141 DFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       141 ~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                      +||.+||..||.+|||+.++++||||+.
T Consensus       274 ~li~~~L~~dP~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          274 DLISQMIDHDPLKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHTSGGGSC
T ss_pred             HHHHHHhhCChhhCCCHHHHHhCCccCC
Confidence            9999999999999999999999999975

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=243.78  Aligned_cols=155  Identities=25%  Similarity=0.391  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......  ......+|+.|+|||++.+
T Consensus       114 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  193 (327)
T 3lzb_A          114 IGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILH  193 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcC
Confidence            57889999999999999999999999999999999999999999999999976543211  1233456789999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |.+||.+.........+......  ..+..++..+.++|.+||..||.+|||+
T Consensus       194 -----~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~  266 (327)
T 3lzb_A          194 -----RIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERL--PQPPICTIDVYMIMRKCWMIDADSRPKF  266 (327)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCC--CCCTTBCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCC--CCCccCCHHHHHHHHHHcCCChhHCcCH
Confidence                 678999999999999999999 99999888766655555444322  2356689999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       267 ~ell~  271 (327)
T 3lzb_A          267 RELII  271 (327)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.95  E-value=1.3e-28  Score=245.05  Aligned_cols=156  Identities=24%  Similarity=0.391  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......  ......+|+.|+|||++.+
T Consensus       114 ~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  193 (327)
T 3poz_A          114 IGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILH  193 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhcc
Confidence            57889999999999999999999999999999999999999999999999976543221  1223456889999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+......  ..+..++..+.+++.+||..+|.+|||+
T Consensus       194 -----~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  266 (327)
T 3poz_A          194 -----RIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERL--PQPPICTIDVYMIMVKCWMIDADSRPKF  266 (327)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCC--CCCTTBCHHHHHHHHHHTCSCGGGSCCH
T ss_pred             -----CCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCC--CCCccCCHHHHHHHHHHcCCChhhCCCH
Confidence                 678999999999999999999 99999887766555444443322  2456689999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       267 ~ell~~  272 (327)
T 3poz_A          267 RELIIE  272 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.95  E-value=2e-28  Score=236.45  Aligned_cols=156  Identities=27%  Similarity=0.501  Sum_probs=132.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......+|+.|+|||++.+ 
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  181 (269)
T 4hcu_A          103 FAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF-  181 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHH-
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcC-
Confidence            5788999999999999999999999999999999999999999999999987654321 12334457788999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |.+||...........+.....+  ..+...++.+.+++.+||..||.+|||+.
T Consensus       182 ----~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~  255 (269)
T 4hcu_A          182 ----SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRL--YKPRLASTHVYQIMNHCWRERPEDRPAFS  255 (269)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCC--CCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccC--CCCCcCCHHHHHHHHHHccCCcccCcCHH
Confidence                568899999999999999999 99999998877776666654332  23556799999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      ++++|
T Consensus       256 ~ll~~  260 (269)
T 4hcu_A          256 RLLRQ  260 (269)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.1e-28  Score=247.64  Aligned_cols=156  Identities=28%  Similarity=0.476  Sum_probs=133.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......  .......+|+.|+|||++.+
T Consensus       188 l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  267 (382)
T 3tt0_A          188 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD  267 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHS
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcC
Confidence            5788999999999999999999999999999999999999999999999998654321  22334467889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+.....+.  .+..+++.+.+||.+||..||++|||+
T Consensus       268 -----~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~Rps~  340 (382)
T 3tt0_A          268 -----RIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMD--KPSNCTNELYMMMRDCWHAVPSQRPTF  340 (382)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCC--CCSSCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCccCCHHHHHHHHHHcCCChhhCcCH
Confidence                 678899999999999999999 999999888766666555544332  356789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       341 ~ell~~  346 (382)
T 3tt0_A          341 KQLVED  346 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.95  E-value=1.8e-28  Score=242.89  Aligned_cols=156  Identities=26%  Similarity=0.484  Sum_probs=132.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||+++......  .......+|+.|+|||++.+
T Consensus       135 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  214 (322)
T 1p4o_A          135 PSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKD  214 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhcc
Confidence            3678899999999999999999999999999999999999999999999997654321  12234457889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++|+|++ |..||.+.........+.....+.  .+..+++.+.++|.+||..||.+|||+
T Consensus       215 -----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~  287 (322)
T 1p4o_A          215 -----GVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLD--KPDNCPDMLFELMRMCWQYNPKMRPSF  287 (322)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence                 568899999999999999999 899999888766666665544332  356789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       288 ~e~l~~  293 (322)
T 1p4o_A          288 LEIISS  293 (322)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=241.29  Aligned_cols=156  Identities=25%  Similarity=0.468  Sum_probs=128.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++ .++.+||+|||++......  ......||+.|+|||++.+.
T Consensus       136 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~  213 (312)
T 2iwi_A          136 LGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRH  213 (312)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSS--CBCCCCSCTTTSCHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccC--cccccCCcccccCceeeecC
Confidence            57889999999999999999999999999999999999 8899999999998766542  33456799999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.++||||||+++|+|++|+.||....      .+....   ...+..+++.+.++|.+||..||++|||+.+
T Consensus       214 ----~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~---~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  280 (312)
T 2iwi_A          214 ----QYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAE---LHFPAHVSPDCCALIRRCLAPKPSSRPSLEE  280 (312)
T ss_dssp             ----CBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHTC---CCCCTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             ----CCCCccchHHHHHHHHHHHHHCCCCCCChH------HHhhhc---cCCcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence                223458999999999999999999997632      122221   1234568999999999999999999999999


Q ss_pred             HhcCcCCCCCCC
Q psy9090         160 LLEHPFITSLPE  171 (488)
Q Consensus       160 ll~hp~f~~~~~  171 (488)
                      +++||||+...+
T Consensus       281 ~l~~~~~~~~~~  292 (312)
T 2iwi_A          281 ILLDPWMQTPAE  292 (312)
T ss_dssp             HHHSTTTCC---
T ss_pred             HhcChhhcCchh
Confidence            999999987543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.95  E-value=3e-28  Score=235.13  Aligned_cols=155  Identities=30%  Similarity=0.600  Sum_probs=125.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC---CeecccCCCCEEEcc--------CCcEEEEecCCccccccccCccccccCCCc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH---VIHRDLRGSNVLLTK--------DGEVKIVDFGLSRETANTFDKKKTFLGSPS   69 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~--------~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~   69 (488)
                      +++..++.++.||+.||.|||++|   |+||||||+|||++.        ++.+||+|||++......  ......||+.
T Consensus       102 ~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~  179 (271)
T 3dtc_A          102 IPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRT--TKMSAAGAYA  179 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---------------CCGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccc--cccCCCCccc
Confidence            578899999999999999999999   899999999999986        778999999999765432  2234579999


Q ss_pred             cccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          70 WMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        70 y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                      |+|||++.+     ..++.++||||||+++|+|++|..||.+............... ....+..+++.+.++|.+||..
T Consensus       180 y~aPE~~~~-----~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~  253 (271)
T 3dtc_A          180 WMAPEVIRA-----SMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKL-ALPIPSTCPEPFAKLMEDCWNP  253 (271)
T ss_dssp             GSCHHHHHH-----CCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCC-CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             eeCHHHhcc-----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCC-CCCCCcccCHHHHHHHHHHhcC
Confidence            999999976     5688999999999999999999999998887666666554432 2234567899999999999999


Q ss_pred             CCCCCCCHHHHhcC
Q psy9090         150 NPEHRPYMSELLEH  163 (488)
Q Consensus       150 dP~~Rps~~ell~h  163 (488)
                      ||.+|||+.+++++
T Consensus       254 ~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          254 DPHSRPSFTNILDQ  267 (271)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CcccCcCHHHHHHH
Confidence            99999999999874

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.95  E-value=2.7e-28  Score=235.25  Aligned_cols=156  Identities=28%  Similarity=0.482  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......+|+.|+|||++.+ 
T Consensus       101 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  179 (268)
T 3sxs_A          101 LEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHY-  179 (268)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhc-
Confidence            5788999999999999999999999999999999999999999999999987654321 12233456778999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |..||...........+......  ..+...++.+.++|.+||..||.+|||+.
T Consensus       180 ----~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~  253 (268)
T 3sxs_A          180 ----FKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRL--YRPHLASDTIYQIMYSCWHELPEKRPTFQ  253 (268)
T ss_dssp             ----SEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC--CCCTTSCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             ----cCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCC--CCCCcChHHHHHHHHHHcCCChhhCcCHH
Confidence                567889999999999999999 99999988877766666654432  23456799999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       254 ~ll~~  258 (268)
T 3sxs_A          254 QLLSS  258 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.95  E-value=2.1e-28  Score=239.42  Aligned_cols=157  Identities=18%  Similarity=0.298  Sum_probs=126.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc-----EEEEecCCccccccccC-------ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-----VKIVDFGLSRETANTFD-------KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~-----vkL~Dfg~a~~~~~~~~-------~~~~~~gt~   68 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.     +||+|||+++.......       ......||+
T Consensus       103 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~  182 (298)
T 1csn_A          103 FSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA  182 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCc
Confidence            578999999999999999999999999999999999987776     99999999986543311       234567999


Q ss_pred             ccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC---hHHHHHHHHhCC--CCCCCCCCCcCHHHHHHH
Q psy9090          69 SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH---PTRALFQIVRNP--PPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~---~~~~~~~~~~~~--~~~~~~~~~~s~~~~~li  143 (488)
                      .|+|||++.+     ..++.++|||||||++|+|++|..||.+..   .......+....  .+.......+++.+.++|
T Consensus       183 ~y~aPE~~~~-----~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  257 (298)
T 1csn_A          183 RYMSINTHLG-----REQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYM  257 (298)
T ss_dssp             TTCCHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHH
T ss_pred             ccCCchhhcC-----CCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHH
Confidence            9999999976     568899999999999999999999997743   223333322211  111112346799999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      .+||..||++|||++++++
T Consensus       258 ~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          258 HYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             HHHHHCCTTCCCCHHHHHH
T ss_pred             HHHhcCCcccCCCHHHHHH
Confidence            9999999999999999875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.2e-28  Score=244.67  Aligned_cols=158  Identities=25%  Similarity=0.417  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+
T Consensus       169 l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  248 (344)
T 1rjb_A          169 LTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE  248 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhcc
Confidence            46788999999999999999999999999999999999999999999999976543321  1234467889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+..........+..... ...+..+++.+.+||.+||..||.+|||+
T Consensus       249 -----~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~  322 (344)
T 1rjb_A          249 -----GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFK-MDQPFYATEEIYIIMQSCWAFDSRKRPSF  322 (344)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHcCCCchhCcCH
Confidence                 568899999999999999998 99999887665555555554322 22355679999999999999999999999


Q ss_pred             HHHhcCc
Q psy9090         158 SELLEHP  164 (488)
Q Consensus       158 ~ell~hp  164 (488)
                      .+++++.
T Consensus       323 ~~l~~~l  329 (344)
T 1rjb_A          323 PNLTSFL  329 (344)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.95  E-value=2.8e-28  Score=243.52  Aligned_cols=156  Identities=26%  Similarity=0.435  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......  .......+|+.|+|||++.+
T Consensus       171 l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  250 (343)
T 1luf_A          171 LSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY  250 (343)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhcc
Confidence            4678899999999999999999999999999999999999999999999987653321  22334568899999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+.....+.  .+..+++.+.++|.+||..||.+|||+
T Consensus       251 -----~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rps~  323 (343)
T 1luf_A          251 -----NRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILA--CPENCPLELYNLMRLCWSKLPADRPSF  323 (343)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCC--CCCCCCHHHHHHHHHHcccCcccCCCH
Confidence                 568899999999999999999 999999888777666666554332  356789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       324 ~~~~~~  329 (343)
T 1luf_A          324 CSIHRI  329 (343)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999863

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.95  E-value=3.9e-28  Score=235.97  Aligned_cols=156  Identities=26%  Similarity=0.473  Sum_probs=132.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......+|+.|+|||++.+ 
T Consensus       117 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  195 (283)
T 3gen_A          117 FQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY-  195 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhcc-
Confidence            5788999999999999999999999999999999999999999999999987653321 12233456788999999986 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |..||...........+......  ..+...++.+.++|.+||..+|.+|||+.
T Consensus       196 ----~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~  269 (283)
T 3gen_A          196 ----SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL--YRPHLASEKVYTIMYSCWHEKADERPTFK  269 (283)
T ss_dssp             ----CCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCC--CCCCcCCHHHHHHHHHHccCChhHCcCHH
Confidence                568899999999999999998 99999988877766666654332  23456789999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      ++++|
T Consensus       270 ~ll~~  274 (283)
T 3gen_A          270 ILLSN  274 (283)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.95  E-value=4e-28  Score=236.96  Aligned_cols=160  Identities=31%  Similarity=0.559  Sum_probs=121.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......  ........||+.|+|||++..
T Consensus       117 ~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  196 (289)
T 3og7_A          117 FEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRM  196 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcc
Confidence            478899999999999999999999999999999999999999999999998754321  122344579999999999863


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-CCCC--CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-PPPG--LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-~~~~--~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..  ...++.++||||||+++|+|++|..||............+.. ....  ......+++.+.+||.+||..+|.+||
T Consensus       197 ~~--~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  274 (289)
T 3og7_A          197 QD--SNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERP  274 (289)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             cC--CCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCC
Confidence            21  156788999999999999999999999886665555544432 2111  112356789999999999999999999


Q ss_pred             CHHHHhc
Q psy9090         156 YMSELLE  162 (488)
Q Consensus       156 s~~ell~  162 (488)
                      |+.++++
T Consensus       275 s~~ell~  281 (289)
T 3og7_A          275 SFPRILA  281 (289)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999986

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.95  E-value=2.9e-28  Score=240.23  Aligned_cols=156  Identities=26%  Similarity=0.475  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........  ......+|+.|+|||++.+
T Consensus       147 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  226 (314)
T 2ivs_A          147 LTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFD  226 (314)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcC
Confidence            36788999999999999999999999999999999999999999999999976543211  2234467889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+.....+  ..+..+++.+.++|.+||..||.+|||+
T Consensus       227 -----~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~  299 (314)
T 2ivs_A          227 -----HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRM--ERPDNCSEEMYRLMLQCWKQEPDKRPVF  299 (314)
T ss_dssp             -----CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCcC--CCCccCCHHHHHHHHHHccCChhhCcCH
Confidence                 568899999999999999999 99999888766655555444332  2356789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       300 ~~l~~~  305 (314)
T 2ivs_A          300 ADISKD  305 (314)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=3.2e-28  Score=237.32  Aligned_cols=157  Identities=25%  Similarity=0.428  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........   ......+|+.|+|||++.
T Consensus       107 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  186 (287)
T 1u59_A          107 IPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN  186 (287)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhc
Confidence            57889999999999999999999999999999999999999999999999976543211   123345688999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++||||||+++|+|++ |..||...........+.....+.  .+..+++.+.++|.+||..||.+|||
T Consensus       187 ~-----~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rps  259 (287)
T 1u59_A          187 F-----RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRME--CPPECPPELYALMSDCWIYKWEDRPD  259 (287)
T ss_dssp             H-----CEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHTTCSSGGGSCC
T ss_pred             c-----CCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCC--CCCCcCHHHHHHHHHHcCCChhhCcC
Confidence            5     567889999999999999998 999999887766666665544333  35678999999999999999999999


Q ss_pred             HHHHhcCc
Q psy9090         157 MSELLEHP  164 (488)
Q Consensus       157 ~~ell~hp  164 (488)
                      +.+++++.
T Consensus       260 ~~~l~~~l  267 (287)
T 1u59_A          260 FLTVEQRM  267 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.95  E-value=4e-28  Score=241.35  Aligned_cols=155  Identities=23%  Similarity=0.411  Sum_probs=129.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......   ......+|+.|+|||++.
T Consensus       148 ~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  227 (325)
T 3kul_A          148 FTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIA  227 (325)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhc
Confidence            57889999999999999999999999999999999999999999999999986543211   122334677899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++ |..||.+.........+.......  .+..+++.+.+||.+||..||.+|||
T Consensus       228 ~-----~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps  300 (325)
T 3kul_A          228 F-----RTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLP--APMGCPHALHQLMLDCWHKDRAQRPR  300 (325)
T ss_dssp             H-----CEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             C-----CCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCC--CCCCcCHHHHHHHHHHccCChhhCcC
Confidence            6     568899999999999999999 999999988777776666553332  35678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       301 ~~eil~  306 (325)
T 3kul_A          301 FSQIVS  306 (325)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999886

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.95  E-value=5.1e-28  Score=235.06  Aligned_cols=156  Identities=22%  Similarity=0.379  Sum_probs=128.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........ ......+|+.|+|||++.+ 
T Consensus       110 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  188 (281)
T 3cc6_A          110 LKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINF-  188 (281)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhcc-
Confidence            57888999999999999999999999999999999999999999999999876543211 2234457889999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |+.||...........+.......  .+..+++.+.++|.+||..||.+|||+.
T Consensus       189 ----~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rps~~  262 (281)
T 3cc6_A          189 ----RRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLP--KPDLCPPVLYTLMTRCWDYDPSDRPRFT  262 (281)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHccCCchhCcCHH
Confidence                568899999999999999998 999998776666555555443322  3456799999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       263 ell~~  267 (281)
T 3cc6_A          263 ELVCS  267 (281)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99874

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=1.1e-28  Score=241.10  Aligned_cols=157  Identities=19%  Similarity=0.365  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccC-------ccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFD-------KKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y   70 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||+   +.++.+||+|||++........       ......||+.|
T Consensus       102 ~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y  181 (296)
T 3uzp_A          102 FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARY  181 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccccccccccccccccc
Confidence            5788999999999999999999999999999999999   4889999999999976543321       12456799999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhC--CCCCCCCCCCcCHHHHHHHHH
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRN--PPPGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~--~~~~~~~~~~~s~~~~~li~~  145 (488)
                      +|||++.+     ..++.++|||||||++|+|++|+.||.+...   ......+...  ..+.......+++.+.++|.+
T Consensus       182 ~aPE~~~~-----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  256 (296)
T 3uzp_A          182 ASINTHLG-----IEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNF  256 (296)
T ss_dssp             CCHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHH
T ss_pred             CChhhhcC-----CCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHH
Confidence            99999976     5688999999999999999999999976432   1122222111  001111235679999999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q psy9090         146 CLEKNPEHRPYMSELLE  162 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~  162 (488)
                      ||..||.+|||+.++++
T Consensus       257 ~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          257 CRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHTSCTTCCCCHHHHHH
T ss_pred             HHhcCcCcCCCHHHHHH
Confidence            99999999999999875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.95  E-value=4.4e-28  Score=239.21  Aligned_cols=156  Identities=24%  Similarity=0.419  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.......  .......+++.|+|||++.+
T Consensus       144 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  223 (313)
T 3brb_A          144 IPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLAD  223 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcC
Confidence            5788999999999999999999999999999999999999999999999987654321  12233457889999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++|+|++ |.+||.+.........+.....+.  .+..+++.+.++|.+||..||.+|||+
T Consensus       224 -----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~  296 (313)
T 3brb_A          224 -----RVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLK--QPEDCLDELYEIMYSCWRTDPLDRPTF  296 (313)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCC--CBTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             -----CCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCCC--CCccccHHHHHHHHHHcCCChhhCcCH
Confidence                 678899999999999999999 999998887766666666554333  346789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       297 ~~l~~~  302 (313)
T 3brb_A          297 SVLRLQ  302 (313)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.95  E-value=3.3e-28  Score=241.82  Aligned_cols=155  Identities=27%  Similarity=0.447  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......+++.|+|||++.+  
T Consensus       139 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  215 (327)
T 1fvr_A          139 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNY--  215 (327)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEE-CCC----CCTTTCCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEcccCcCcccccc-ccccCCCCCccccChhhhcc--
Confidence            478899999999999999999999999999999999999999999999998754332 22334467889999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||||||++|+|++ |..||.+.........+......  ..+..+++.+.+||.+||..||.+|||+.+
T Consensus       216 ---~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  290 (327)
T 1fvr_A          216 ---SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL--EKPLNCDDEVYDLMRQCWREKPYERPSFAQ  290 (327)
T ss_dssp             ---CEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCC--CCCTTBCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---ccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCC--CCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence               567899999999999999998 99999988876666555544322  235578999999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      ++++
T Consensus       291 ll~~  294 (327)
T 1fvr_A          291 ILVS  294 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.95  E-value=4.1e-28  Score=239.10  Aligned_cols=157  Identities=27%  Similarity=0.473  Sum_probs=130.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........  ......+|+.|+|||++.+
T Consensus       142 ~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  221 (313)
T 1t46_A          142 LDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFN  221 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcC
Confidence            47889999999999999999999999999999999999999999999999876544321  1234457889999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++|+|++ |..||.+................. ..+..+++.+.++|.+||..||.+|||+
T Consensus       222 -----~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~  295 (313)
T 1t46_A          222 -----CVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRM-LSPEHAPAEMYDIMKTCWDADPLKRPTF  295 (313)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCC-CCcccCCHHHHHHHHHHcCCCchhCcCH
Confidence                 568899999999999999998 999998776555555544432222 2345679999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       296 ~ell~~  301 (313)
T 1t46_A          296 KQIVQL  301 (313)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.95  E-value=1.7e-28  Score=247.82  Aligned_cols=157  Identities=19%  Similarity=0.274  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc--cCCcEEEEecCCccccccccC-------ccccccCCCccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTFD-------KKKTFLGSPSWM   71 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~--~~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y~   71 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++  .++.+||+|||+++.......       ......||+.|+
T Consensus       149 l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  228 (364)
T 3op5_A          149 FSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFT  228 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCcc
Confidence            57899999999999999999999999999999999999  889999999999976543211       123456999999


Q ss_pred             cchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh----CCCC----CCCCCCCcCHHHHHHH
Q psy9090          72 APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR----NPPP----GLYRASNWSQHYVDFI  143 (488)
Q Consensus        72 aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~----~~~~----~~~~~~~~s~~~~~li  143 (488)
                      |||++.+     ..++.++|||||||++|+|++|+.||.+............    ...+    .......+++++.++|
T Consensus       229 aPE~~~~-----~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  303 (364)
T 3op5_A          229 SIDAHNG-----VAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYM  303 (364)
T ss_dssp             CHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHH
T ss_pred             CHHHhCC-----CCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHH
Confidence            9999976     5689999999999999999999999975332222111110    0000    0112256789999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      ..||..+|.+||++.++++
T Consensus       304 ~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          304 ETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             HHHHTCCTTCCCCHHHHHH
T ss_pred             HHHhcCCCCCCCCHHHHHH
Confidence            9999999999999998864

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.95  E-value=3.2e-28  Score=244.07  Aligned_cols=158  Identities=18%  Similarity=0.255  Sum_probs=124.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC--cEEEEecCCcccccccc-------CccccccCCCccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG--EVKIVDFGLSRETANTF-------DKKKTFLGSPSWM   71 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~--~vkL~Dfg~a~~~~~~~-------~~~~~~~gt~~y~   71 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++  .+||+|||+++......       .......||+.|+
T Consensus       148 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  227 (345)
T 2v62_A          148 FKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFT  227 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCcccc
Confidence            57899999999999999999999999999999999999887  99999999997653321       1124557999999


Q ss_pred             cchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-HHHHHHHH---hCCCCC----CCCCCCcCHHHHHHH
Q psy9090          72 APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP-TRALFQIV---RNPPPG----LYRASNWSQHYVDFI  143 (488)
Q Consensus        72 aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-~~~~~~~~---~~~~~~----~~~~~~~s~~~~~li  143 (488)
                      |||++.+     ..++.++|||||||++|+|++|..||.+... ........   ....+.    ......+++.+.++|
T Consensus       228 aPE~~~~-----~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  302 (345)
T 2v62_A          228 SLDAHKG-----VALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFL  302 (345)
T ss_dssp             CHHHHHT-----CCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHH
T ss_pred             CHHHhcC-----CCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHH
Confidence            9999986     5689999999999999999999999954221 11111111   111111    001226789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy9090         144 AECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~h  163 (488)
                      .+||..||++|||++++++.
T Consensus       303 ~~~l~~dp~~Rps~~~l~~~  322 (345)
T 2v62_A          303 VCAHSLAYDEKPNYQALKKI  322 (345)
T ss_dssp             HHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHhhcCcccCCCHHHHHHH
Confidence            99999999999999998863

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.95  E-value=4.6e-28  Score=241.24  Aligned_cols=156  Identities=20%  Similarity=0.326  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc-----EEEEecCCccccccccC-------ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE-----VKIVDFGLSRETANTFD-------KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~-----vkL~Dfg~a~~~~~~~~-------~~~~~~gt~   68 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.     +||+|||+++.......       ......||+
T Consensus       102 ~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~  181 (330)
T 2izr_A          102 FSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTA  181 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCc
Confidence            578999999999999999999999999999999999998887     99999999986543211       124668999


Q ss_pred             ccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhCC--CCCCCCCCCcCHHHHHHH
Q psy9090          69 SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRNP--PPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~~--~~~~~~~~~~s~~~~~li  143 (488)
                      .|+|||++.+     ..++.++|||||||++|+|++|..||.+...   ......+....  .+.......++ ++.++|
T Consensus       182 ~y~aPE~~~~-----~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li  255 (330)
T 2izr_A          182 RYMSINTHLG-----KEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYL  255 (330)
T ss_dssp             TTCCHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHH
T ss_pred             cccChHHHcC-----CCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHH
Confidence            9999999986     6688999999999999999999999987432   22222322111  11100112234 999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      ..||..+|.+||+++++++
T Consensus       256 ~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          256 RYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             HHHHHCCTTCCCCHHHHHH
T ss_pred             HHHHhCCCCCCCCHHHHHH
Confidence            9999999999999988765

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.7e-27  Score=232.87  Aligned_cols=155  Identities=23%  Similarity=0.451  Sum_probs=127.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc----cCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT----FDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~----~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.....    ........+|+.|+|||.+
T Consensus       121 ~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (298)
T 3pls_A          121 PTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL  200 (298)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhh
Confidence            467889999999999999999999999999999999999999999999999755332    1223345678899999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..++.++||||||+++|+|++ |.+||...........+......  ..+..+++.+.++|.+||..||.+||
T Consensus       201 ~~-----~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rp  273 (298)
T 3pls_A          201 QT-----YRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRL--PQPEYCPDSLYQVMQQCWEADPAVRP  273 (298)
T ss_dssp             TT-----CCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             cc-----CCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCC--CCCccchHHHHHHHHHHccCChhhCc
Confidence            76     568899999999999999999 55556666655555444444322  23566899999999999999999999


Q ss_pred             CHHHHhc
Q psy9090         156 YMSELLE  162 (488)
Q Consensus       156 s~~ell~  162 (488)
                      |+.++++
T Consensus       274 s~~~ll~  280 (298)
T 3pls_A          274 TFRVLVG  280 (298)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999876

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=243.48  Aligned_cols=152  Identities=29%  Similarity=0.549  Sum_probs=122.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc--------------cccccC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK--------------KKTFLG   66 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~--------------~~~~~g   66 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++........              .....|
T Consensus       105 ~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  184 (310)
T 3s95_A          105 YPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVG  184 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCC
Confidence            578899999999999999999999999999999999999999999999999765332111              125679


Q ss_pred             CCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH-----HHHHHHhCCCCCCCCCCCcCHHHHH
Q psy9090          67 SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR-----ALFQIVRNPPPGLYRASNWSQHYVD  141 (488)
Q Consensus        67 t~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~  141 (488)
                      |+.|+|||++.+     ..++.++||||||+++|+|++|..||.......     ........     ..+..+++.+.+
T Consensus       185 t~~y~aPE~~~~-----~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~  254 (310)
T 3s95_A          185 NPYWMAPEMING-----RSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR-----YCPPNCPPSFFP  254 (310)
T ss_dssp             CGGGCCHHHHTT-----CCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH-----TCCTTCCTTHHH
T ss_pred             CcceeCHHHhcC-----CCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc-----cCCCCCCHHHHH
Confidence            999999999976     678999999999999999999999986532211     01111111     124567889999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q psy9090         142 FIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       142 li~~~L~~dP~~Rps~~ell~  162 (488)
                      +|.+||..||++|||+.++++
T Consensus       255 li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          255 ITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999986

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.95  E-value=1.1e-27  Score=230.45  Aligned_cols=156  Identities=27%  Similarity=0.501  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++....... .......+++.|+|||++.+ 
T Consensus       101 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  179 (267)
T 3t9t_A          101 FAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF-  179 (267)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcC-
Confidence            4788999999999999999999999999999999999999999999999987653321 12234457789999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|+||||+++|+|++ |.+||...........+.....+  ..+..+++.+.+++.+||..||.+|||+.
T Consensus       180 ----~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~  253 (267)
T 3t9t_A          180 ----SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRL--YKPRLASTHVYQIMNHCWRERPEDRPAFS  253 (267)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCC--CCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcC--CCCccCcHHHHHHHHHHccCChhhCcCHH
Confidence                568899999999999999999 99999988877666666554332  23456799999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      +++++
T Consensus       254 ~ll~~  258 (267)
T 3t9t_A          254 RLLRQ  258 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.95  E-value=1.4e-27  Score=233.21  Aligned_cols=155  Identities=25%  Similarity=0.446  Sum_probs=129.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........   ......+++.|+|||++.
T Consensus       114 ~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  193 (291)
T 1xbb_A          114 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN  193 (291)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhc
Confidence            57889999999999999999999999999999999999999999999999976543211   122334678899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++||||||+++|+|++ |..||.+.........+.....+.  .+..+++.+.++|.+||..||.+|||
T Consensus       194 ~-----~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps  266 (291)
T 1xbb_A          194 Y-----YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG--CPAGCPREMYDLMNLCWTYDVENRPG  266 (291)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             c-----CCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHcCCChhhCcC
Confidence            6     557889999999999999999 999999888766665555544332  35678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       267 ~~~l~~  272 (291)
T 1xbb_A          267 FAAVEL  272 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.95  E-value=9.2e-28  Score=234.04  Aligned_cols=156  Identities=27%  Similarity=0.470  Sum_probs=129.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++........   ......+|+.|+|||++.
T Consensus       118 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (291)
T 1u46_A          118 FLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK  197 (291)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhc
Confidence            47889999999999999999999999999999999999999999999999876543211   123446778899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++||||||+++|+|++ |..||.+.........+..... ....+..+++.+.++|.+||..||.+|||
T Consensus       198 ~-----~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps  271 (291)
T 1u46_A          198 T-----RTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGE-RLPRPEDCPQDIYNVMVQCWAHKPEDRPT  271 (291)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             C-----CCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCC-CCCCCcCcCHHHHHHHHHHccCCcccCcC
Confidence            6     557889999999999999999 9999998887776666654432 23345678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       272 ~~~l~~  277 (291)
T 1u46_A          272 FVALRD  277 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=1.5e-27  Score=231.45  Aligned_cols=152  Identities=24%  Similarity=0.454  Sum_probs=123.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++......   .....+++.|+|||++.+  
T Consensus       114 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~--  188 (278)
T 1byg_A          114 LGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALRE--  188 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecccccccccc---ccCCCccccccCHHHhCC--
Confidence            467889999999999999999999999999999999999999999999998755432   233467889999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++||||||+++|+|++ |..||...........+.....+  ..+..+++.+.++|.+||..||.+|||+.+
T Consensus       189 ---~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  263 (278)
T 1byg_A          189 ---KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM--DAPDGCPPAVYEVMKNCWHLDAAMRPSFLQ  263 (278)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC--CCcccCCHHHHHHHHHHhcCChhhCCCHHH
Confidence               568899999999999999998 99999887766655555444322  235678999999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       264 l~~  266 (278)
T 1byg_A          264 LRE  266 (278)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=1.9e-27  Score=230.63  Aligned_cols=155  Identities=27%  Similarity=0.496  Sum_probs=131.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.++..++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......+++.|+|||++.+ 
T Consensus       106 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  184 (279)
T 1qpc_A          106 LTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY-  184 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhcc-
Confidence            5788999999999999999999999999999999999999999999999997654321 12233456789999999975 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |..||.+.........+......  ..+..+++.+.++|.+||..||++|||+.
T Consensus       185 ----~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~  258 (279)
T 1qpc_A          185 ----GTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRM--VRPDNCPEELYQLMRLCWKERPEDRPTFD  258 (279)
T ss_dssp             ----CEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCC--CCcccccHHHHHHHHHHhccChhhCCCHH
Confidence                567889999999999999999 99999988876666666554332  23567899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       259 ~l~~  262 (279)
T 1qpc_A          259 YLRS  262 (279)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.95  E-value=4.8e-28  Score=238.88  Aligned_cols=155  Identities=29%  Similarity=0.495  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+ 
T Consensus       146 ~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-  224 (316)
T 2xir_A          146 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD-  224 (316)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhcc-
Confidence            5788999999999999999999999999999999999999999999999976543211  2234567889999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHH-hCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIV-RNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                          ..++.++|||||||++|+|++ |..||.+..........+ .....  ..+..+++.+.++|.+||..||.+|||+
T Consensus       225 ----~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~  298 (316)
T 2xir_A          225 ----RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM--RAPDYTTPEMYQTMLDCWHGEPSQRPTF  298 (316)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             ----ccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccC--CCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence                668899999999999999998 999998766444433333 33222  2345679999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .++++|
T Consensus       299 ~ell~~  304 (316)
T 2xir_A          299 SELVEH  304 (316)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999975

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.95  E-value=1.9e-27  Score=231.58  Aligned_cols=155  Identities=23%  Similarity=0.468  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCc-----EEEEecCCccccccccCccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGE-----VKIVDFGLSRETANTFDKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~-----vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||++|  |+||||||+|||++.++.     +||+|||+++....   ......||+.|+||
T Consensus       119 ~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~g~~~y~aP  195 (287)
T 4f0f_A          119 IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH---SVSGLLGNFQWMAP  195 (287)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSS---CEECCCCCCTTSCG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccc---cccccCCCccccCc
Confidence            578899999999999999999999  999999999999988776     99999999875433   33456799999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH--HHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA--LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      |++...   ...++.++|||||||++|+|++|..||........  ...+..... ....+..+++.+.++|.+||..||
T Consensus       196 E~~~~~---~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp  271 (287)
T 4f0f_A          196 ETIGAE---EESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL-RPTIPEDCPPRLRNVIELCWSGDP  271 (287)
T ss_dssp             GGSSCS---SCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC-CCCCCTTSCHHHHHHHHHHTCSSG
T ss_pred             hhhccC---CCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC-CCCCCcccCHHHHHHHHHHhcCCh
Confidence            998531   14578899999999999999999999976543332  333333222 222456789999999999999999


Q ss_pred             CCCCCHHHHhc
Q psy9090         152 EHRPYMSELLE  162 (488)
Q Consensus       152 ~~Rps~~ell~  162 (488)
                      .+|||+.++++
T Consensus       272 ~~Rps~~~ll~  282 (287)
T 4f0f_A          272 KKRPHFSYIVK  282 (287)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hhCcCHHHHHH
Confidence            99999999986

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.95  E-value=1.7e-27  Score=233.18  Aligned_cols=155  Identities=25%  Similarity=0.451  Sum_probs=128.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----CccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++......    .......+|+.|+|||++
T Consensus       125 ~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  204 (298)
T 3f66_A          125 PTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESL  204 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHh
Confidence            4678899999999999999999999999999999999999999999999997654321    122344678899999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..++.++|+||||+++|+|++ |.+||...........+......  ..+..+++.+.++|.+||..||.+||
T Consensus       205 ~~-----~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rp  277 (298)
T 3f66_A          205 QT-----QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRL--LQPEYCPDPLYEVMLKCWHPKAEMRP  277 (298)
T ss_dssp             HH-----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             cC-----CCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCC--CCCccCCHHHHHHHHHHcCCChhhCc
Confidence            76     568899999999999999999 77788777666655555554432  23556799999999999999999999


Q ss_pred             CHHHHhc
Q psy9090         156 YMSELLE  162 (488)
Q Consensus       156 s~~ell~  162 (488)
                      |+.++++
T Consensus       278 s~~ell~  284 (298)
T 3f66_A          278 SFSELVS  284 (298)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999986

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.95  E-value=1.7e-27  Score=247.75  Aligned_cols=155  Identities=26%  Similarity=0.480  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......+|+.|+|||++.. 
T Consensus       281 ~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  359 (454)
T 1qcf_A          281 QPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF-  359 (454)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhcc-
Confidence            4677899999999999999999999999999999999999999999999998654321 11223456788999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|||||||++|+|++ |..||.+.........+......+  .+..+++.+.+||.+||..||++|||++
T Consensus       360 ----~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~cl~~dp~~RPt~~  433 (454)
T 1qcf_A          360 ----GSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP--RPENCPEELYNIMMRCWKNRPEERPTFE  433 (454)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence                568999999999999999999 999999988777777766654332  3567899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       434 ~i~~  437 (454)
T 1qcf_A          434 YIQS  437 (454)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.95  E-value=5e-28  Score=253.04  Aligned_cols=172  Identities=18%  Similarity=0.312  Sum_probs=134.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE---ccCCcEEEEecCCccccccccC-------ccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL---TKDGEVKIVDFGLSRETANTFD-------KKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl---~~~~~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y   70 (488)
                      |++.+++.|+.||+.||.|||++||+||||||+|||+   +.++.+||+|||+++.......       ......||+.|
T Consensus       100 l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y  179 (483)
T 3sv0_A          100 LSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARY  179 (483)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccc
Confidence            5789999999999999999999999999999999999   6889999999999986543321       12356799999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhCCC--CCCCCCCCcCHHHHHHHHH
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRNPP--PGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~--~~~~~~~~~s~~~~~li~~  145 (488)
                      +|||++.+     ..++.++|||||||++|+|++|+.||.+...   ......+.....  ........+++++.+||..
T Consensus       180 ~aPE~~~~-----~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~  254 (483)
T 3sv0_A          180 ASVNTHLG-----IEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHY  254 (483)
T ss_dssp             CCHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHH
T ss_pred             cCHHHhcC-----CCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHH
Confidence            99999986     5688999999999999999999999976543   222222221110  0001124678999999999


Q ss_pred             hcccCCCCCCCHHHHhc----------CcCCCCCCCCccccc
Q psy9090         146 CLEKNPEHRPYMSELLE----------HPFITSLPENDLHLS  177 (488)
Q Consensus       146 ~L~~dP~~Rps~~ell~----------hp~f~~~~~~~~~~~  177 (488)
                      ||..+|.+||++.+|++          ++|+..++|+.+...
T Consensus       255 cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~dW~~~~~~  296 (483)
T 3sv0_A          255 CRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTILKYQ  296 (483)
T ss_dssp             HHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCCHHHHHTC-
T ss_pred             HhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCcCchhhccc
Confidence            99999999999988753          677777777654433

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.94  E-value=1.7e-27  Score=237.44  Aligned_cols=156  Identities=27%  Similarity=0.465  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........  ......+|+.|+|||++.+
T Consensus       154 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  233 (334)
T 2pvf_A          154 MTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFD  233 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcC
Confidence            46788999999999999999999999999999999999999999999999976543211  2233457789999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||||+++|+|++ |..||.+.........+.....+.  .+..+++.+.++|.+||..+|.+|||+
T Consensus       234 -----~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~  306 (334)
T 2pvf_A          234 -----RVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMD--KPANCTNELYMMMRDCWHAVPSQRPTF  306 (334)
T ss_dssp             -----CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCCC--CCccCCHHHHHHHHHHccCChhhCcCH
Confidence                 567899999999999999999 999999887766665555544332  346789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      .+++++
T Consensus       307 ~ell~~  312 (334)
T 2pvf_A          307 KQLVED  312 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.94  E-value=1.1e-27  Score=243.19  Aligned_cols=155  Identities=25%  Similarity=0.432  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......  ......+++.|+|||++..
T Consensus       210 ~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  289 (377)
T 3cbl_A          210 LRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNY  289 (377)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhcc
Confidence            57889999999999999999999999999999999999999999999999875433211  1112235678999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+.........+......  +.+..+++.+.+||.+||..||++|||+
T Consensus       290 -----~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~Rps~  362 (377)
T 3cbl_A          290 -----GRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRL--PCPELCPDAVFRLMEQCWAYEPGQRPSF  362 (377)
T ss_dssp             -----CEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCchhCcCH
Confidence                 568889999999999999998 99999988876665555544332  2356689999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       363 ~~i~~  367 (377)
T 3cbl_A          363 STIYQ  367 (377)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.94  E-value=7.3e-28  Score=239.78  Aligned_cols=156  Identities=28%  Similarity=0.474  Sum_probs=129.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........  ......+|+.|+|||++.+
T Consensus       161 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  240 (333)
T 2i1m_A          161 ASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFD  240 (333)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhcc
Confidence            47788999999999999999999999999999999999999999999999976543211  1234457889999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|++ |..||.+................ ...+...++.+.++|.+||..||.+|||+
T Consensus       241 -----~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~  314 (333)
T 2i1m_A          241 -----CVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQ-MAQPAFAPKNIYSIMQACWALEPTHRPTF  314 (333)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHhccChhhCcCH
Confidence                 568899999999999999998 99999877655555555443222 12345678999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       315 ~~l~~  319 (333)
T 2i1m_A          315 QQICS  319 (333)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.94  E-value=1.5e-27  Score=232.40  Aligned_cols=155  Identities=25%  Similarity=0.468  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......+|+.|+|||++.+ 
T Consensus       108 ~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  186 (288)
T 3kfa_A          108 VSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY-  186 (288)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHH-
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhcc-
Confidence            4788999999999999999999999999999999999999999999999997654332 12233457789999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||||+++|+|++ |.+||...........+......  ..+..+++.+.+||.+||..||.+|||+.
T Consensus       187 ----~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~  260 (288)
T 3kfa_A          187 ----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM--ERPEGCPEKVYELMRACWQWNPSDRPSFA  260 (288)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCC--CCCCCCCHHHHHHHHHHhCCChhhCcCHH
Confidence                568899999999999999999 99999887766555555444332  23567899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       261 ~~~~  264 (288)
T 3kfa_A          261 EIHQ  264 (288)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.94  E-value=2e-27  Score=234.51  Aligned_cols=157  Identities=24%  Similarity=0.323  Sum_probs=119.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....... .......||+.|+|||++.+ 
T Consensus       131 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  209 (309)
T 2h34_A          131 LAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSE-  209 (309)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcC-
Confidence            5788999999999999999999999999999999999999999999999987654321 22335578999999999876 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-CHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-YMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-s~~  158 (488)
                          ..++.++||||||+++|+|++|..||...........+..........+..+++.+.++|.+||..||.+|| |++
T Consensus       210 ----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~  285 (309)
T 2h34_A          210 ----SHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCG  285 (309)
T ss_dssp             --------CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHH
T ss_pred             ----CCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHH
Confidence                567889999999999999999999998876543333333333333334567899999999999999999999 888


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       286 ~l~~  289 (309)
T 2h34_A          286 DLSA  289 (309)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.94  E-value=1.6e-27  Score=233.19  Aligned_cols=155  Identities=25%  Similarity=0.364  Sum_probs=121.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......   .......+++.|+|||++.
T Consensus       111 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  190 (295)
T 3ugc_A          111 IDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLT  190 (295)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhc
Confidence            5788999999999999999999999999999999999999999999999998654321   1123345777899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH----------------HHHHHHHhCCCCCCCCCCCcCHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT----------------RALFQIVRNPPPGLYRASNWSQHYVD  141 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~----------------~~~~~~~~~~~~~~~~~~~~s~~~~~  141 (488)
                      +     ..++.++||||||+++|+|++|..||......                .....+....  ....+..+++.+.+
T Consensus       191 ~-----~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~  263 (295)
T 3ugc_A          191 E-----SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG--RLPRPDGCPDEIYM  263 (295)
T ss_dssp             H-----CCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC--CCCCCTTCCHHHHH
T ss_pred             C-----CCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccC--cCCCCcCcCHHHHH
Confidence            6     56899999999999999999999998653211                1111112222  22345678999999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q psy9090         142 FIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       142 li~~~L~~dP~~Rps~~ell~  162 (488)
                      +|.+||..||++|||+.++++
T Consensus       264 li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          264 IMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             HHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHcCCChhhCCCHHHHHH
Confidence            999999999999999999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.94  E-value=6.2e-28  Score=239.59  Aligned_cols=162  Identities=23%  Similarity=0.345  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC----------CCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN----------HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~----------givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~   68 (488)
                      +++..++.++.||+.||+|||+.          ||+||||||+|||++.++.+||+|||+++.......  ......||+
T Consensus       118 ~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~  197 (322)
T 3soc_A          118 VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTR  197 (322)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCc
Confidence            47889999999999999999999          999999999999999999999999999976543222  233467999


Q ss_pred             ccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---------------HHHHHHHH-hCCCCC-CC-
Q psy9090          69 SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---------------TRALFQIV-RNPPPG-LY-  130 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---------------~~~~~~~~-~~~~~~-~~-  130 (488)
                      .|+|||++.+.......++.++|||||||++|+|++|+.||.+...               ........ .....+ .. 
T Consensus       198 ~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (322)
T 3soc_A          198 RYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRD  277 (322)
T ss_dssp             GGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCG
T ss_pred             cccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccc
Confidence            9999999976322223456788999999999999999999965321               11222222 111111 10 


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  162 (488)
                        .....++.+.+||.+||..||++|||+.++++
T Consensus       278 ~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          278 YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence              11122456999999999999999999999986

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.2e-27  Score=242.62  Aligned_cols=156  Identities=25%  Similarity=0.454  Sum_probs=121.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc----CccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF----DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~----~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......    .......+|+.|+|||++
T Consensus       189 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  268 (373)
T 3c1x_A          189 PTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL  268 (373)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHh
Confidence            3678899999999999999999999999999999999999999999999997553221    112334577899999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..++.++|||||||++|+|++ |.+||...........+......  ..+..+++.+.++|.+||..||.+||
T Consensus       269 ~~-----~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~--~~p~~~~~~l~~li~~cl~~dp~~RP  341 (373)
T 3c1x_A          269 QT-----QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRL--LQPEYCPDPLYEVMLKCWHPKAEMRP  341 (373)
T ss_dssp             HH-----CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             cC-----CCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            76     678999999999999999999 78888776655555555544332  23566899999999999999999999


Q ss_pred             CHHHHhcC
Q psy9090         156 YMSELLEH  163 (488)
Q Consensus       156 s~~ell~h  163 (488)
                      |+.+++++
T Consensus       342 s~~ell~~  349 (373)
T 3c1x_A          342 SFSELVSR  349 (373)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999864

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.94  E-value=1.6e-27  Score=231.39  Aligned_cols=154  Identities=25%  Similarity=0.422  Sum_probs=128.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++...... .......||+.|+|||++.+  
T Consensus       119 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--  195 (284)
T 2a19_B          119 LDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND-GKRTRSKGTLRYMSPEQISS--  195 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEESSCC-SCCCCCCSCCTTSCHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhheecccc-ccccccCCcccccChhhhcc--
Confidence            578899999999999999999999999999999999999999999999998766543 23345579999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..++.++||||||+++|+|++|..|+...  ......+....     .+..+++.+.++|.+||..||.+|||+.++
T Consensus       196 ---~~~~~~~Di~slG~il~~l~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~li~~~l~~dp~~Rps~~e~  265 (284)
T 2a19_B          196 ---QDYGKEVDLYALGLILAELLHVCDTAFET--SKFFTDLRDGI-----ISDIFDKKEKTLLQKLLSKKPEDRPNTSEI  265 (284)
T ss_dssp             ---SCCCTHHHHHHHHHHHHHHHSCCSSHHHH--HHHHHHHHTTC-----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CCCcchhhhHHHHHHHHHHHhcCCcchhH--HHHHHHhhccc-----ccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence               56889999999999999999999987532  12222222221     235678999999999999999999999999


Q ss_pred             hcCcCCC
Q psy9090         161 LEHPFIT  167 (488)
Q Consensus       161 l~hp~f~  167 (488)
                      ++++|..
T Consensus       266 l~~l~~~  272 (284)
T 2a19_B          266 LRTLTVW  272 (284)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=3.3e-27  Score=235.51  Aligned_cols=156  Identities=22%  Similarity=0.411  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......   ......+|+.|+|||++.
T Consensus       144 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  223 (333)
T 1mqb_A          144 FSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAIS  223 (333)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcc
Confidence            57889999999999999999999999999999999999999999999999976543211   112234678899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++ |..||...........+......+  .+..+++.+.++|.+||..+|.+||+
T Consensus       224 ~-----~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rps  296 (333)
T 1mqb_A          224 Y-----RKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLP--TPMDCPSAIYQLMMQCWQQERARRPK  296 (333)
T ss_dssp             S-----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCC--CCTTCBHHHHHHHHHHTCSSTTTSCC
T ss_pred             c-----CCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCC--CcccCCHHHHHHHHHHcCCChhhCcC
Confidence            6     568899999999999999998 999999888766666665543322  34578999999999999999999999


Q ss_pred             HHHHhcC
Q psy9090         157 MSELLEH  163 (488)
Q Consensus       157 ~~ell~h  163 (488)
                      +.+++++
T Consensus       297 ~~~l~~~  303 (333)
T 1mqb_A          297 FADIVSI  303 (333)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.94  E-value=1.1e-27  Score=238.21  Aligned_cols=160  Identities=25%  Similarity=0.427  Sum_probs=132.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC---CcEEEEecCCcccccccc--CccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD---GEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~---~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~   75 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.+   ..+||+|||++.......  .......||+.|+|||+
T Consensus       137 ~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  216 (327)
T 2yfx_A          137 LAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEA  216 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhH
Confidence            4678899999999999999999999999999999999854   459999999987543221  22334568899999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +.+     ..++.++||||||+++|+|++ |..||...........+.....+.  .+..+++.+.++|.+||..||.+|
T Consensus       217 ~~~-----~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~R  289 (327)
T 2yfx_A          217 FME-----GIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD--PPKNCPGPVYRIMTQCWQHQPEDR  289 (327)
T ss_dssp             HHH-----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             hcC-----CCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHhcCChhhC
Confidence            976     568899999999999999998 999999887766666665543332  345789999999999999999999


Q ss_pred             CCHHHHhcCcCCC
Q psy9090         155 PYMSELLEHPFIT  167 (488)
Q Consensus       155 ps~~ell~hp~f~  167 (488)
                      ||+.++++++|+.
T Consensus       290 ps~~~ll~~l~~~  302 (327)
T 2yfx_A          290 PNFAIILERIEYC  302 (327)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999998764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.5e-27  Score=238.09  Aligned_cols=157  Identities=16%  Similarity=0.291  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC--cEEEEecCCccccccccC-------ccccccCCCccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG--EVKIVDFGLSRETANTFD-------KKKTFLGSPSWM   71 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~--~vkL~Dfg~a~~~~~~~~-------~~~~~~gt~~y~   71 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++  .+||+|||+++.......       ......||+.|+
T Consensus       156 l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  235 (352)
T 2jii_A          156 LSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFI  235 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCcccc
Confidence            57899999999999999999999999999999999999998  899999999976543211       123457999999


Q ss_pred             cchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC-hHHHHHHHH---hCCCCCCCC----CCCcCHHHHHHH
Q psy9090          72 APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMH-PTRALFQIV---RNPPPGLYR----ASNWSQHYVDFI  143 (488)
Q Consensus        72 aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~-~~~~~~~~~---~~~~~~~~~----~~~~s~~~~~li  143 (488)
                      |||++.+     ..++.++|||||||++|+|++|..||.... ....+....   ....+....    ...+++.+.+||
T Consensus       236 aPE~~~~-----~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  310 (352)
T 2jii_A          236 SMDLHKG-----CGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYL  310 (352)
T ss_dssp             CHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHH
T ss_pred             CHHHHcc-----CCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHH
Confidence            9999976     568899999999999999999999997653 222222222   111111111    124689999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      .+||..||.+|||++++++
T Consensus       311 ~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          311 KVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             HHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHhCChhhCCCHHHHHH
Confidence            9999999999999999875

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.94  E-value=2.9e-27  Score=233.07  Aligned_cols=156  Identities=24%  Similarity=0.501  Sum_probs=116.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||.|||++|++||||||+||+++.++.+||+|||++..............|++.|+|||++.+  
T Consensus       133 ~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  210 (310)
T 2wqm_A          133 IPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE--  210 (310)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCC--
Confidence            478899999999999999999999999999999999999999999999998765543333445678999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCC--hHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMH--PTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                         ..++.++||||||+++|+|++|..||.+..  .......+.....+. .....+++.+.+||.+||..||.+|||+.
T Consensus       211 ---~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~  286 (310)
T 2wqm_A          211 ---NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPP-LPSDHYSEELRQLVNMCINPDPEKRPDVT  286 (310)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCC-CCTTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ---CCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCC-CcccccCHHHHHHHHHHcCCChhhCCCHH
Confidence               568899999999999999999999997543  222333333322222 22356899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       287 ~il~  290 (310)
T 2wqm_A          287 YVYD  290 (310)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.94  E-value=2.8e-27  Score=245.83  Aligned_cols=152  Identities=25%  Similarity=0.461  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....   .....+++.|+|||++.+  
T Consensus       286 ~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~---~~~~~~~~~y~aPE~~~~--  360 (450)
T 1k9a_A          286 LGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALRE--  360 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCCTTTSCHHHHHS--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc---ccCCCCCcceeCHHHhcC--
Confidence            477889999999999999999999999999999999999999999999999754332   223367889999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||||||++|+|++ |..||...........+..+...  ..+..+++.+.+||.+||..||.+|||+.+
T Consensus       361 ---~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~--~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~  435 (450)
T 1k9a_A          361 ---KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM--DAPDGCPPAVYDVMKNCWHLDAATRPTFLQ  435 (450)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCcCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               678999999999999999998 99999887766666666554433  245678999999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       436 l~~  438 (450)
T 1k9a_A          436 LRE  438 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.94  E-value=1e-27  Score=234.81  Aligned_cols=162  Identities=25%  Similarity=0.448  Sum_probs=122.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH--------HCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLH--------ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH--------~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~   68 (488)
                      +++..+..++.||+.||+|||        ++||+||||||+|||++.++.+||+|||+++.......    ......||+
T Consensus       102 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~  181 (301)
T 3q4u_A          102 LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTK  181 (301)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeeccccccccccccccccccc
Confidence            478899999999999999999        99999999999999999999999999999875543211    123457999


Q ss_pred             ccccchhhcccccCC-CCCCCccchhhhHHHHHHHhcC----------CCCCCCCCh----HHHHHHHHhCC--CCCCC-
Q psy9090          69 SWMAPEIMRCGHKEV-DGYDNRIDVWALGITAIELGDG----------KPPFEDMHP----TRALFQIVRNP--PPGLY-  130 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~-~~~~~~~DiwslGvil~elltg----------~~Pf~~~~~----~~~~~~~~~~~--~~~~~-  130 (488)
                      .|+|||++.+..... ..++.++|||||||++|+|++|          ..||.....    ...........  .+..+ 
T Consensus       182 ~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (301)
T 3q4u_A          182 RYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPN  261 (301)
T ss_dssp             GGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCG
T ss_pred             ceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCCh
Confidence            999999997631100 0345789999999999999999          889854321    22333333221  11111 


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhc
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  162 (488)
                        .....++.+.+||.+||..||++|||+.++++
T Consensus       262 ~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          262 RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence              11224578999999999999999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.94  E-value=3.9e-27  Score=226.84  Aligned_cols=154  Identities=18%  Similarity=0.351  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.+++.++.||+.||+|||++|  ++||||||+||+++.++.++|+|||++....     .....||+.|+|||++.+
T Consensus       108 ~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~  182 (271)
T 3kmu_A          108 VDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ-----SPGRMYAPAWVAPEALQK  182 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS-----CTTCBSCGGGSCHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeec-----ccCccCCccccChhhhcc
Confidence            578999999999999999999999  9999999999999999999999888765432     234578999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      ...  ..++.++|||||||++|+|++|..||.+.........+....... ..+..+++.+.++|.+||..||++|||++
T Consensus       183 ~~~--~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~  259 (271)
T 3kmu_A          183 KPE--DTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRP-TIPPGISPHVSKLMKICMNEDPAKRPKFD  259 (271)
T ss_dssp             CGG--GSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCC--CCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            211  234458999999999999999999999888777666666543322 23567899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       260 ~il~  263 (271)
T 3kmu_A          260 MIVP  263 (271)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.3e-27  Score=232.72  Aligned_cols=152  Identities=28%  Similarity=0.558  Sum_probs=119.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH---CCCeecccCCCCEEEccCCc-EEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE---NHVIHRDLRGSNVLLTKDGE-VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~---~givHrDlkp~NILl~~~~~-vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++..+..++.||+.||.|||+   +||+||||||+|||++.++. +||+|||++......   .....||+.|+|||++
T Consensus        99 ~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~  175 (307)
T 2eva_A           99 YTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH---MTNNKGSAAWMAPEVF  175 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------------CCTTSSCHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---cccCCCCCceEChhhh
Confidence            3578889999999999999999   89999999999999998887 799999998755432   2344689999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh--HHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP--TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      .+     ..++.++||||||+++|+|++|+.||.....  ............+.  .+..+++.+.++|.+||..||.+|
T Consensus       176 ~~-----~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~R  248 (307)
T 2eva_A          176 EG-----SNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP--LIKNLPKPIESLMTRCWSKDPSQR  248 (307)
T ss_dssp             TC-----CCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCC--CBTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             CC-----CCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCC--cccccCHHHHHHHHHHhcCChhhC
Confidence            76     5788999999999999999999999975432  22223333333222  345679999999999999999999


Q ss_pred             CCHHHHhc
Q psy9090         155 PYMSELLE  162 (488)
Q Consensus       155 ps~~ell~  162 (488)
                      ||+.++++
T Consensus       249 ps~~ell~  256 (307)
T 2eva_A          249 PSMEEIVK  256 (307)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999987

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.94  E-value=2.7e-27  Score=239.96  Aligned_cols=155  Identities=21%  Similarity=0.417  Sum_probs=119.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc---cccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK---KKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~---~~~~~gt~~y~aPE~l~   77 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++........   .....+++.|+|||++.
T Consensus       144 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  223 (373)
T 2qol_A          144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIA  223 (373)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhc
Confidence            467889999999999999999999999999999999999999999999999765432111   11223567899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++ |..||...........+......  ..+..++..+.++|.+||..||.+||+
T Consensus       224 ~-----~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~cl~~dp~~RPs  296 (373)
T 2qol_A          224 Y-----RKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRL--PPPMDCPAALYQLMLDCWQKDRNNRPK  296 (373)
T ss_dssp             H-----CCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEEC--CCCTTCBHHHHHHHHHHTCSSGGGSCC
T ss_pred             c-----CCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCccccHHHHHHHHHHhCcChhhCcC
Confidence            6     578999999999999999997 99999988876666555544222  234567899999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       297 ~~~i~~  302 (373)
T 2qol_A          297 FEQIVS  302 (373)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.94  E-value=3.7e-27  Score=245.08  Aligned_cols=161  Identities=27%  Similarity=0.471  Sum_probs=130.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......+++.|+|||++.. 
T Consensus       277 ~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  355 (452)
T 1fmk_A          277 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY-  355 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhc-
Confidence            4678999999999999999999999999999999999999999999999997654321 11223456789999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|||||||++|+|++ |..||.+.........+......+  .+..+++.+.+||.+||..||++|||++
T Consensus       356 ----~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rpt~~  429 (452)
T 1fmk_A          356 ----GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP--CPPECPESLHDLMCQCWRKEPEERPTFE  429 (452)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence                568999999999999999999 999999988777776666554332  3567899999999999999999999999


Q ss_pred             HHhc--CcCCCC
Q psy9090         159 ELLE--HPFITS  168 (488)
Q Consensus       159 ell~--hp~f~~  168 (488)
                      ++++  ..++..
T Consensus       430 ~l~~~L~~~~~~  441 (452)
T 1fmk_A          430 YLQAFLEDYFTS  441 (452)
T ss_dssp             HHHHHHHTTTSC
T ss_pred             HHHHHHHHHhcc
Confidence            9886  245543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.94  E-value=2.4e-27  Score=230.99  Aligned_cols=151  Identities=23%  Similarity=0.463  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc--------EEEEecCCccccccccCccccccCCCcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE--------VKIVDFGLSRETANTFDKKKTFLGSPSWMA   72 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~--------vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~a   72 (488)
                      +++..++.++.||+.||.|||++||+||||||+|||++.++.        +||+|||++.....    .....||+.|+|
T Consensus       110 ~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~a  185 (289)
T 4fvq_A          110 INILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP----KDILQERIPWVP  185 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC----HHHHHHTTTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccC----ccccCCcCcccC
Confidence            578889999999999999999999999999999999998887        99999999865432    234468899999


Q ss_pred             chhhcccccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          73 PEIMRCGHKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        73 PE~l~~~~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      ||++.+.    ..++.++|||||||++|+|++| .+||....... .........   ..+...++.+.+||.+||..||
T Consensus       186 PE~~~~~----~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~l~~li~~~l~~dp  257 (289)
T 4fvq_A          186 PECIENP----KNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR-KLQFYEDRH---QLPAPKAAELANLINNCMDYEP  257 (289)
T ss_dssp             HHHHHCG----GGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-HHHHHHTTC---CCCCCSSCTTHHHHHHHSCSSG
T ss_pred             HHHhCCC----CCCCchhHHHHHHHHHHHHHcCCCCCccccchHH-HHHHhhccC---CCCCCCCHHHHHHHHHHcCCCh
Confidence            9999752    4578999999999999999995 55555544433 333333221   1234568889999999999999


Q ss_pred             CCCCCHHHHhcC
Q psy9090         152 EHRPYMSELLEH  163 (488)
Q Consensus       152 ~~Rps~~ell~h  163 (488)
                      .+|||+.+++++
T Consensus       258 ~~Rps~~~ll~~  269 (289)
T 4fvq_A          258 DHRPSFRAIIRD  269 (289)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999985

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.94  E-value=1.3e-27  Score=237.00  Aligned_cols=159  Identities=23%  Similarity=0.341  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||.|||++||+||||||+||+++.++.+||+|||+++......  .......||+.|+|||++.+
T Consensus       136 ~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  215 (321)
T 2qkw_B          136 MSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIK  215 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcC
Confidence            4688999999999999999999999999999999999999999999999987543221  12234568999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH------HHHHHhC-CCCCC-------CCCCCcCHHHHHHHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA------LFQIVRN-PPPGL-------YRASNWSQHYVDFIA  144 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~------~~~~~~~-~~~~~-------~~~~~~s~~~~~li~  144 (488)
                           ..++.++|||||||++|+|++|+.||....+...      ....... .....       ..+...+..+.+++.
T Consensus       216 -----~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  290 (321)
T 2qkw_B          216 -----GRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAV  290 (321)
T ss_dssp             -----CBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHH
T ss_pred             -----CCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHH
Confidence                 5688999999999999999999999975433211      0111111 10000       112234567899999


Q ss_pred             HhcccCCCCCCCHHHHhcCc
Q psy9090         145 ECLEKNPEHRPYMSELLEHP  164 (488)
Q Consensus       145 ~~L~~dP~~Rps~~ell~hp  164 (488)
                      +||..||++|||+.+++++.
T Consensus       291 ~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          291 KCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             HHTCSSGGGSCCHHHHHHHH
T ss_pred             HHcCCCcccCcCHHHHHHHH
Confidence            99999999999999998763

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.94  E-value=9.5e-27  Score=230.03  Aligned_cols=160  Identities=28%  Similarity=0.438  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-----cCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-----FDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-----~~~~~~~~gt~~y~aPE~   75 (488)
                      +++.+++.++.||+.||+|||++|++||||||+||+++ ++.+||+|||++......     ........||+.|+|||+
T Consensus       127 ~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~  205 (319)
T 2y4i_B          127 LDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEI  205 (319)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHH
Confidence            46789999999999999999999999999999999998 689999999997654211     122334568999999999


Q ss_pred             hccccc----CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCC
Q psy9090          76 MRCGHK----EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNP  151 (488)
Q Consensus        76 l~~~~~----~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  151 (488)
                      +.....    ....++.++|||||||++|+|++|..||...........+.....+.. ....+++.+.++|.+||..||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p  284 (319)
T 2y4i_B          206 IRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNL-SQIGMGKEISDILLFCWAFEQ  284 (319)
T ss_dssp             HSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCC-CCSSCCTTHHHHHHHHHCSST
T ss_pred             hhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCC-CcCCCCHHHHHHHHHHhcCCh
Confidence            875211    124578899999999999999999999998887766666655544332 334678999999999999999


Q ss_pred             CCCCCHHHHhc
Q psy9090         152 EHRPYMSELLE  162 (488)
Q Consensus       152 ~~Rps~~ell~  162 (488)
                      .+|||+.++++
T Consensus       285 ~~Rpt~~~l~~  295 (319)
T 2y4i_B          285 EERPTFTKLMD  295 (319)
T ss_dssp             TTSCCHHHHHH
T ss_pred             hhCcCHHHHHH
Confidence            99999999987

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.1e-27  Score=236.22  Aligned_cols=157  Identities=25%  Similarity=0.371  Sum_probs=108.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEccCCcEEEEecCCccccccccC------------ccccccC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD------------KKKTFLG   66 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~------------~~~~~~g   66 (488)
                      +++.+++.++.||+.||.|||++|  |+||||||+|||++.++.+||+|||+++.......            ......|
T Consensus       133 ~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 3ll6_A          133 LSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNT  212 (337)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC--------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccC
Confidence            578899999999999999999999  99999999999999999999999999976543211            1124568


Q ss_pred             CCccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHh
Q psy9090          67 SPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAEC  146 (488)
Q Consensus        67 t~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~  146 (488)
                      |+.|+|||++....  ...++.++|||||||++|+|++|..||.............     ........+..+.+||.+|
T Consensus       213 t~~y~aPE~~~~~~--~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~  285 (337)
T 3ll6_A          213 TPMYRTPEIIDLYS--NFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKY-----SIPPHDTQYTVFHSLIRAM  285 (337)
T ss_dssp             -----------CCT--TSCSSHHHHHHHHHHHHHHHHHSSCCC------------C-----CCCTTCCSSGGGHHHHHHH
T ss_pred             CCCcCChhhhhccc--cCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCcc-----cCCcccccchHHHHHHHHH
Confidence            99999999984211  1567889999999999999999999997654433222211     1223455678899999999


Q ss_pred             cccCCCCCCCHHHHhcCc
Q psy9090         147 LEKNPEHRPYMSELLEHP  164 (488)
Q Consensus       147 L~~dP~~Rps~~ell~hp  164 (488)
                      |..||.+|||+.+++++.
T Consensus       286 l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          286 LQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             SCSSGGGSCCHHHHHHHH
T ss_pred             ccCChhhCcCHHHHHHHH
Confidence            999999999999999864

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.94  E-value=5.9e-27  Score=253.10  Aligned_cols=155  Identities=25%  Similarity=0.442  Sum_probs=129.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++......   .......+|+.|+|||++.
T Consensus       466 l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~  545 (635)
T 4fl3_A          466 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN  545 (635)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhc
Confidence            5788999999999999999999999999999999999999999999999997654321   1122335678899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++ |..||.+.........+.......  .+..+++++.+||.+||..||++|||
T Consensus       546 ~-----~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~dP~~RPs  618 (635)
T 4fl3_A          546 Y-----YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG--CPAGCPREMYDLMNLCWTYDVENRPG  618 (635)
T ss_dssp             H-----CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             C-----CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHcCCCHhHCcC
Confidence            6     678999999999999999998 999999988777666666554333  35678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       619 ~~~l~~  624 (635)
T 4fl3_A          619 FAAVEL  624 (635)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.94  E-value=9.3e-27  Score=250.78  Aligned_cols=155  Identities=25%  Similarity=0.432  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......   ......+|+.|+|||++.
T Consensus       433 l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~  512 (613)
T 2ozo_A          433 IPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN  512 (613)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhc
Confidence            57889999999999999999999999999999999999999999999999986543211   112234568999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|+|++ |..||.+.........+..+....  .+..+++.+.+||.+||..+|++||+
T Consensus       513 ~-----~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~dP~~RPs  585 (613)
T 2ozo_A          513 F-----RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRME--CPPECPPELYALMSDCWIYKWEDRPD  585 (613)
T ss_dssp             H-----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHTTCSSTTTSCC
T ss_pred             C-----CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCC--CCCcCCHHHHHHHHHHcCCChhHCcC
Confidence            6     678999999999999999998 999999888777776666554332  35678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       586 ~~~l~~  591 (613)
T 2ozo_A          586 FLTVEQ  591 (613)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999854

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.94  E-value=6e-27  Score=229.63  Aligned_cols=156  Identities=25%  Similarity=0.362  Sum_probs=125.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......   .......||+.|+|||++.
T Consensus       123 ~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  202 (302)
T 4e5w_A          123 INLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLM  202 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeec
Confidence            5788999999999999999999999999999999999999999999999997654432   1233456888899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC--------------ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM--------------HPTRALFQIVRNPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~--------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li  143 (488)
                      +     ..++.++||||||+++|+|++|..|+...              .............. ....+..+++.+.+||
T Consensus       203 ~-----~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li  276 (302)
T 4e5w_A          203 Q-----SKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGK-RLPCPPNCPDEVYQLM  276 (302)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTC-CCCCCTTCCHHHHHHH
T ss_pred             C-----CCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccC-CCCCCCCCCHHHHHHH
Confidence            6     56788999999999999999999986432              11112222222211 2224567899999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      .+||..||.+|||+.++++
T Consensus       277 ~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          277 RKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             HHTTCSSGGGSCCHHHHHH
T ss_pred             HHHcCCCCCCCCCHHHHHH
Confidence            9999999999999999986

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.94  E-value=3.2e-27  Score=234.70  Aligned_cols=157  Identities=23%  Similarity=0.390  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++........   ......||+.|+|||++.
T Consensus       124 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  203 (327)
T 3lxl_A          124 LDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLS  203 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhc
Confidence            57889999999999999999999999999999999999999999999999976543211   223446888899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH--------------HHHHHHHhCCCCCCCCCCCcCHHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--------------RALFQIVRNPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~~~~li  143 (488)
                      +     ..++.++||||||+++|+|++|..||......              ......+.... ....+..+++.+.+||
T Consensus       204 ~-----~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li  277 (327)
T 3lxl_A          204 D-----NIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQ-RLPAPPACPAEVHELM  277 (327)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTC-CCCCCTTCCHHHHHHH
T ss_pred             c-----CCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhccc-CCCCCCcccHHHHHHH
Confidence            6     56788999999999999999999998653321              11222222211 2223567899999999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q psy9090         144 AECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~h  163 (488)
                      .+||..||.+|||+.+++++
T Consensus       278 ~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          278 KLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             HHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCChhhCcCHHHHHHH
Confidence            99999999999999999654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.94  E-value=4.8e-27  Score=233.17  Aligned_cols=162  Identities=23%  Similarity=0.355  Sum_probs=124.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC---CCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN---HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l   76 (488)
                      +++..++.++.||+.||+|||++   ||+||||||+|||++.++.+||+|||++....... .......||+.|+|||++
T Consensus       128 ~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (326)
T 3uim_A          128 LDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYL  207 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHh
Confidence            46789999999999999999999   99999999999999999999999999997654322 223445699999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC----ChHHHHHHHHhCCCCC-----C-------CCCCCcCHHHH
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM----HPTRALFQIVRNPPPG-----L-------YRASNWSQHYV  140 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~----~~~~~~~~~~~~~~~~-----~-------~~~~~~s~~~~  140 (488)
                      .+     ..++.++|||||||++|+|++|..||...    .........+......     .       ..+...++.+.
T Consensus       208 ~~-----~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  282 (326)
T 3uim_A          208 ST-----GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLI  282 (326)
T ss_dssp             HH-----SEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHH
T ss_pred             cc-----CCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHH
Confidence            76     56789999999999999999999999521    1111111122111100     0       01112246789


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCcCCC
Q psy9090         141 DFIAECLEKNPEHRPYMSELLEHPFIT  167 (488)
Q Consensus       141 ~li~~~L~~dP~~Rps~~ell~hp~f~  167 (488)
                      +++.+||..||.+|||+.++++|..-.
T Consensus       283 ~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          283 QVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            999999999999999999999876543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.94  E-value=6.1e-27  Score=246.18  Aligned_cols=155  Identities=24%  Similarity=0.463  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......+++.|+|||++.. 
T Consensus       315 ~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  393 (495)
T 1opk_A          315 VSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY-  393 (495)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhc-
Confidence            4678899999999999999999999999999999999999999999999998654321 12233456788999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|||||||++|+|++ |..||.+.........+......  ..+..+++.+.+||.+||..||.+|||+.
T Consensus       394 ----~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~  467 (495)
T 1opk_A          394 ----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRM--ERPEGCPEKVYELMRACWQWNPSDRPSFA  467 (495)
T ss_dssp             ----CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCcChhHCcCHH
Confidence                568899999999999999999 99999988766655555444322  24567899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       468 el~~  471 (495)
T 1opk_A          468 EIHQ  471 (495)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=7.9e-27  Score=232.29  Aligned_cols=158  Identities=22%  Similarity=0.432  Sum_probs=119.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHC--------CCeecccCCCCEEEccCCcEEEEecCCccccccccCc----cccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHEN--------HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK----KKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~--------givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~----~~~~~gt~   68 (488)
                      +++..++.++.||+.||.|||++        ||+||||||+|||++.++.+||+|||++.........    .....||+
T Consensus       131 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~  210 (337)
T 3mdy_A          131 LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK  210 (337)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCc
Confidence            47889999999999999999999        9999999999999999999999999999765432111    23557999


Q ss_pred             ccccchhhcccccCCCCCCC------ccchhhhHHHHHHHhcC----------CCCCCCCCh----HHHHHHHHhCC--C
Q psy9090          69 SWMAPEIMRCGHKEVDGYDN------RIDVWALGITAIELGDG----------KPPFEDMHP----TRALFQIVRNP--P  126 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~------~~DiwslGvil~elltg----------~~Pf~~~~~----~~~~~~~~~~~--~  126 (488)
                      .|+|||++.+     ..++.      ++|||||||++|+|++|          ..||.....    ...........  .
T Consensus       211 ~y~aPE~~~~-----~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  285 (337)
T 3mdy_A          211 RYMPPEVLDE-----SLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLR  285 (337)
T ss_dssp             GGCCHHHHTT-----CCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC
T ss_pred             ceeChhhccc-----ccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccC
Confidence            9999999976     22333      48999999999999999          777754321    22223322211  1


Q ss_pred             CCCC---CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy9090         127 PGLY---RASNWSQHYVDFIAECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       127 ~~~~---~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  163 (488)
                      +..+   ....+++.+.+||.+||..||.+|||+.+++++
T Consensus       286 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          286 PSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             CCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            1111   122456779999999999999999999999875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.94  E-value=1.5e-27  Score=235.73  Aligned_cols=160  Identities=23%  Similarity=0.406  Sum_probs=123.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---------ccccccCCCccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---------KKKTFLGSPSWM   71 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---------~~~~~~gt~~y~   71 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........         ......||+.|+
T Consensus       131 ~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  210 (317)
T 2buj_A          131 LTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYR  210 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccC
Confidence            57889999999999999999999999999999999999999999999998875432111         112345799999


Q ss_pred             cchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH-HHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccC
Q psy9090          72 APEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT-RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKN  150 (488)
Q Consensus        72 aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  150 (488)
                      |||++.+..  ...++.++||||||+++|+|++|..||...... .......... ...+.+..+++.+.++|.+||..|
T Consensus       211 aPE~~~~~~--~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~d  287 (317)
T 2buj_A          211 APELFSVQS--HCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ-LSIPQSPRHSSALWQLLNSMMTVD  287 (317)
T ss_dssp             CGGGSSCCS--EEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSS
T ss_pred             CHhHhccCC--CcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc-CCCCccccCCHHHHHHHHHHhhcC
Confidence            999986521  123688999999999999999999999531100 0111122221 122234567999999999999999


Q ss_pred             CCCCCCHHHHhcC
Q psy9090         151 PEHRPYMSELLEH  163 (488)
Q Consensus       151 P~~Rps~~ell~h  163 (488)
                      |.+|||+.+++++
T Consensus       288 p~~Rps~~~ll~~  300 (317)
T 2buj_A          288 PHQRPHIPLLLSQ  300 (317)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCCCHHHHHHH
Confidence            9999999999986

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.93  E-value=5.9e-27  Score=230.37  Aligned_cols=157  Identities=25%  Similarity=0.463  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........  ......||+.|+|||++.+
T Consensus       130 ~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~  209 (307)
T 2nru_A          130 LSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG  209 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC
Confidence            46788999999999999999999999999999999999999999999999876543211  2234578999999999864


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHH---HHHHHhCCCC--------CC-CCCCCcCHHHHHHHHHh
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA---LFQIVRNPPP--------GL-YRASNWSQHYVDFIAEC  146 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~---~~~~~~~~~~--------~~-~~~~~~s~~~~~li~~~  146 (488)
                            .++.++||||||+++|+|++|.+||........   +.........        .. ..+...++.+.+++.+|
T Consensus       210 ------~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c  283 (307)
T 2nru_A          210 ------EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQC  283 (307)
T ss_dssp             ------EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHH
T ss_pred             ------CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence                  478899999999999999999999976543221   1111111100        00 11223457789999999


Q ss_pred             cccCCCCCCCHHHHhcC
Q psy9090         147 LEKNPEHRPYMSELLEH  163 (488)
Q Consensus       147 L~~dP~~Rps~~ell~h  163 (488)
                      |..+|.+|||+.+++++
T Consensus       284 l~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          284 LHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             TCSSTTTSCCHHHHHHH
T ss_pred             cCCCcccCcCHHHHHHH
Confidence            99999999999999864

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.93  E-value=7.8e-27  Score=232.51  Aligned_cols=167  Identities=20%  Similarity=0.279  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHC---------CCeecccCCCCEEEccCCcEEEEecCCccccccc--------cCccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHEN---------HVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--------FDKKKTF   64 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~---------givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--------~~~~~~~   64 (488)
                      ++..++.++.||+.||.|||++         ||+||||||+|||++.++.+||+|||+++.....        .......
T Consensus       109 ~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~  188 (336)
T 3g2f_A          109 DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISE  188 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCT
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccC
Confidence            5678899999999999999999         9999999999999999999999999999765422        1122345


Q ss_pred             cCCCccccchhhcccccC--CCCCCCccchhhhHHHHHHHhcCCCCCCCCCh-----------------HHHHHHHHhCC
Q psy9090          65 LGSPSWMAPEIMRCGHKE--VDGYDNRIDVWALGITAIELGDGKPPFEDMHP-----------------TRALFQIVRNP  125 (488)
Q Consensus        65 ~gt~~y~aPE~l~~~~~~--~~~~~~~~DiwslGvil~elltg~~Pf~~~~~-----------------~~~~~~~~~~~  125 (488)
                      .||+.|+|||++.+....  ...++.++|||||||++|+|++|..||.....                 ...........
T Consensus       189 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (336)
T 3g2f_A          189 VGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSRE  268 (336)
T ss_dssp             TSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTS
T ss_pred             CCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhccc
Confidence            799999999999752110  02456789999999999999999777632111                 11122222211


Q ss_pred             CCCCCCCCC------cCHHHHHHHHHhcccCCCCCCCHHHHhc------CcCCCC
Q psy9090         126 PPGLYRASN------WSQHYVDFIAECLEKNPEHRPYMSELLE------HPFITS  168 (488)
Q Consensus       126 ~~~~~~~~~------~s~~~~~li~~~L~~dP~~Rps~~ell~------hp~f~~  168 (488)
                      ......+..      .++.+.+||.+||..||++|||+.++++      ++|-++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~  323 (336)
T 3g2f_A          269 KQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERN  323 (336)
T ss_dssp             CCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred             ccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence            111111222      3457999999999999999999999954      555543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.93  E-value=1.9e-26  Score=244.61  Aligned_cols=161  Identities=27%  Similarity=0.467  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......+++.|+|||++.. 
T Consensus       360 l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  438 (535)
T 2h8h_A          360 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY-  438 (535)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhcc-
Confidence            4678999999999999999999999999999999999999999999999997654321 11223456788999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|||||||++|+|++ |..||.+....+....+......  ..+..+++.+.+||.+||..||++|||++
T Consensus       439 ----~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~RPt~~  512 (535)
T 2h8h_A          439 ----GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM--PCPPECPESLHDLMCQCWRKEPEERPTFE  512 (535)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence                568999999999999999999 99999998877777666655332  23567899999999999999999999999


Q ss_pred             HHhcC--cCCCC
Q psy9090         159 ELLEH--PFITS  168 (488)
Q Consensus       159 ell~h--p~f~~  168 (488)
                      ++++.  .++..
T Consensus       513 ~l~~~L~~~~~~  524 (535)
T 2h8h_A          513 YLQAFLEDYFTS  524 (535)
T ss_dssp             HHHHHHHTSSCC
T ss_pred             HHHHHHHHHhhc
Confidence            98863  44443

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.93  E-value=8.7e-27  Score=230.82  Aligned_cols=156  Identities=27%  Similarity=0.449  Sum_probs=124.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........   ......+|+.|+|||++.
T Consensus       131 ~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  210 (318)
T 3lxp_A          131 IGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLK  210 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhc
Confidence            57889999999999999999999999999999999999999999999999986643321   223456788899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH--------------HHHHHHHhCCCCCCCCCCCcCHHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT--------------RALFQIVRNPPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~~~~li  143 (488)
                      +     ..++.++||||||+++|+|++|..||......              ......+... .....+..+++.+.+||
T Consensus       211 ~-----~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li  284 (318)
T 3lxp_A          211 E-----YKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERG-ERLPRPDKCPAEVYHLM  284 (318)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CCCCCCTTCCHHHHHHH
T ss_pred             C-----CCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcc-cCCCCCccccHHHHHHH
Confidence            6     56788999999999999999999999653211              0111222221 12234567899999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      .+||..||.+|||+.++++
T Consensus       285 ~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          285 KNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcCCCcccCcCHHHHHH
Confidence            9999999999999999985

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.93  E-value=7.4e-27  Score=229.20  Aligned_cols=142  Identities=29%  Similarity=0.486  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.   ++.+||+|||++.....                     
T Consensus       114 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~---------------------  172 (299)
T 3m2w_A          114 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG---------------------  172 (299)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT---------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc---------------------
Confidence            578899999999999999999999999999999999998   78899999998754321                     


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCC----CCcCHHHHHHHHHhcccCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRA----SNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~----~~~s~~~~~li~~~L~~dP~  152 (488)
                            ..++.++|||||||++|+|++|..||................... ...+    ..+++.+.+||.+||..||.
T Consensus       173 ------~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~  246 (299)
T 3m2w_A          173 ------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPT  246 (299)
T ss_dssp             ------CGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTT
T ss_pred             ------ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChh
Confidence                  346678999999999999999999997755432211111111111 1111    45799999999999999999


Q ss_pred             CCCCHHHHhcCcCCCCC
Q psy9090         153 HRPYMSELLEHPFITSL  169 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~~  169 (488)
                      +|||+.++++||||++.
T Consensus       247 ~Rps~~e~l~hp~~~~~  263 (299)
T 3m2w_A          247 QRMTITEFMNHPWIMQS  263 (299)
T ss_dssp             TSCCHHHHHTSHHHHTG
T ss_pred             hCCCHHHHhcChhhccc
Confidence            99999999999999764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.93  E-value=9e-27  Score=249.77  Aligned_cols=163  Identities=25%  Similarity=0.393  Sum_probs=126.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCc---EEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE---VKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~---vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++..++.++.||+.||+|||++||+||||||+||+++.++.   +||+|||++...... .......||+.|+|||++.
T Consensus       118 lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~-~~~~~~~gt~~Y~APE~l~  196 (676)
T 3qa8_A          118 LKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQG-ELCTEFVGTLQYLAPELLE  196 (676)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSC-CCCCCCCSCCTTCSSCSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccccccc-cccccccCCcccCChHHhc
Confidence            467789999999999999999999999999999999997765   999999999876543 3345568999999999987


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh----------CC-----------CCCCCCCCCcC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR----------NP-----------PPGLYRASNWS  136 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~----------~~-----------~~~~~~~~~~s  136 (488)
                      +     ..++.++|||||||++|+|++|..||........+.....          ..           +.+......++
T Consensus       197 ~-----~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls  271 (676)
T 3qa8_A          197 Q-----KKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILA  271 (676)
T ss_dssp             C-----SCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGH
T ss_pred             c-----CCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhh
Confidence            6     6788999999999999999999999976533221110000          00           00000122356


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      +.+.+||.+||..||.+|||+.++++||||+.+
T Consensus       272 ~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l  304 (676)
T 3qa8_A          272 GKLERWLQCMLMWHQRQRGTDPQNPNVGCFQAL  304 (676)
T ss_dssp             HHHHHHHHHHSCSSCC---CCTTCCCCTTHHHH
T ss_pred             HHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHH
Confidence            889999999999999999999999999999764

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.93  E-value=3.2e-26  Score=248.28  Aligned_cols=155  Identities=25%  Similarity=0.438  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....... ......+|+.|+|||++.+ 
T Consensus       488 l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~-  566 (656)
T 2j0j_A          488 LDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF-  566 (656)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcC-
Confidence            46788999999999999999999999999999999999999999999999986543211 1223456789999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++|||||||++|+|++ |.+||.+.........+.....+.  .+..+++.+.++|.+||..||.+|||+.
T Consensus       567 ----~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~~l~~dP~~RPs~~  640 (656)
T 2j0j_A          567 ----RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP--MPPNCPPTLYSLMTKCWAYDPSRRPRFT  640 (656)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCC--CCccccHHHHHHHHHHcCCChhHCcCHH
Confidence                578999999999999999997 999999988877777776654433  3567899999999999999999999999


Q ss_pred             HHhc
Q psy9090         159 ELLE  162 (488)
Q Consensus       159 ell~  162 (488)
                      ++++
T Consensus       641 el~~  644 (656)
T 2j0j_A          641 ELKA  644 (656)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.93  E-value=8.1e-27  Score=235.55  Aligned_cols=149  Identities=16%  Similarity=0.207  Sum_probs=117.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-----------CCcEEEEecCCcccccc--ccCccccccCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-----------DGEVKIVDFGLSRETAN--TFDKKKTFLGS   67 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-----------~~~vkL~Dfg~a~~~~~--~~~~~~~~~gt   67 (488)
                      |++.+++.|+.||+.||+|||++||+||||||+|||++.           ++.+||+|||+++....  ........+||
T Consensus       169 l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt  248 (365)
T 3e7e_A          169 MPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCET  248 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCC
Confidence            578899999999999999999999999999999999998           89999999999975432  12234556899


Q ss_pred             CccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhc
Q psy9090          68 PSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECL  147 (488)
Q Consensus        68 ~~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L  147 (488)
                      +.|+|||++.+     ..|+.++|||||||++|+|++|+.||.......      ... .........++.+.+++..||
T Consensus       249 ~~y~aPE~~~~-----~~~~~~~DiwslG~il~elltg~~pf~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~l  316 (365)
T 3e7e_A          249 SGFQCVEMLSN-----KPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE------CKP-EGLFRRLPHLDMWNEFFHVML  316 (365)
T ss_dssp             TSCCCHHHHTT-----CCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE------EEE-CSCCTTCSSHHHHHHHHHHHH
T ss_pred             CCCCChHHhcC-----CCCCccccHHHHHHHHHHHHhCCCccccCCCCc------eee-chhccccCcHHHHHHHHHHHc
Confidence            99999999976     568999999999999999999999995432210      000 011112234677899999999


Q ss_pred             ccCCCCCCCHHHHh
Q psy9090         148 EKNPEHRPYMSELL  161 (488)
Q Consensus       148 ~~dP~~Rps~~ell  161 (488)
                      ..+|.+|++..+.+
T Consensus       317 ~~~p~~r~~~~~~l  330 (365)
T 3e7e_A          317 NIPDCHHLPSLDLL  330 (365)
T ss_dssp             CCCCTTCCCCHHHH
T ss_pred             CCCCCCcchHHHHH
Confidence            99999996544433

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.1e-26  Score=237.27  Aligned_cols=162  Identities=20%  Similarity=0.474  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEE----ccCCcEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL----TKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl----~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+++..... .......||+.|+|||++
T Consensus       109 l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~  187 (396)
T 4eut_A          109 LPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD-EQFVSLYGTEEYLHPDMY  187 (396)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCG-GGSSCSSSCCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCC-CccccccCCccccCHHHh
Confidence            5789999999999999999999999999999999999    77788999999999876543 334456799999999998


Q ss_pred             cccccC---CCCCCCccchhhhHHHHHHHhcCCCCCCCC----ChHHHHHHHHhCCCCCC------------------CC
Q psy9090          77 RCGHKE---VDGYDNRIDVWALGITAIELGDGKPPFEDM----HPTRALFQIVRNPPPGL------------------YR  131 (488)
Q Consensus        77 ~~~~~~---~~~~~~~~DiwslGvil~elltg~~Pf~~~----~~~~~~~~~~~~~~~~~------------------~~  131 (488)
                      ......   ...++.++|||||||++|+|++|+.||...    .....+.++....++..                  +.
T Consensus       188 ~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (396)
T 4eut_A          188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (396)
T ss_dssp             HHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             hccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCc
Confidence            641100   034678999999999999999999999632    23455566665443211                  11


Q ss_pred             C----CCcCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy9090         132 A----SNWSQHYVDFIAECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       132 ~----~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  163 (488)
                      .    ..++..+.++|.+||..||++|||+.+++++
T Consensus       268 ~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             ccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            1    1234677899999999999999999998663

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.93  E-value=3.4e-26  Score=227.27  Aligned_cols=156  Identities=25%  Similarity=0.390  Sum_probs=123.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........   ......+++.|+|||++.
T Consensus       142 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  221 (326)
T 2w1i_A          142 IDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLT  221 (326)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhc
Confidence            47888999999999999999999999999999999999999999999999976543321   122345777899999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH---------------HHHHHHHhCCCCCCCCCCCcCHHHHHH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT---------------RALFQIVRNPPPGLYRASNWSQHYVDF  142 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~---------------~~~~~~~~~~~~~~~~~~~~s~~~~~l  142 (488)
                      +     ..++.++||||||+++|+|++|..||......               ..+...+.... ....+..+++.+.++
T Consensus       222 ~-----~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l  295 (326)
T 2w1i_A          222 E-----SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG-RLPRPDGCPDEIYMI  295 (326)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC-CCCCCTTCCHHHHHH
T ss_pred             C-----CCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCC-CCCCCCcccHHHHHH
Confidence            6     45788999999999999999999998643110               01112222211 122356789999999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q psy9090         143 IAECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       143 i~~~L~~dP~~Rps~~ell~  162 (488)
                      |.+||..||.+|||+.++++
T Consensus       296 i~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          296 MTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             HHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999985

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.93  E-value=3.3e-26  Score=228.39  Aligned_cols=163  Identities=21%  Similarity=0.374  Sum_probs=122.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH--------HCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLH--------ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH--------~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~   68 (488)
                      +++.+++.++.||+.||.|||        ++||+||||||+|||++.++.+||+|||++........    ......||+
T Consensus       136 ~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~  215 (342)
T 1b6c_B          136 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK  215 (342)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCc
Confidence            468899999999999999999        89999999999999999999999999999976543321    234557999


Q ss_pred             ccccchhhcccccCC-CCCCCccchhhhHHHHHHHhcC----------CCCCCCCCh----HHHHHHHHh-CCC-CCCC-
Q psy9090          69 SWMAPEIMRCGHKEV-DGYDNRIDVWALGITAIELGDG----------KPPFEDMHP----TRALFQIVR-NPP-PGLY-  130 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~-~~~~~~~DiwslGvil~elltg----------~~Pf~~~~~----~~~~~~~~~-~~~-~~~~-  130 (488)
                      .|+|||++.+..... ..++.++|||||||++|+|++|          ..||.....    ...+...+. ... +..+ 
T Consensus       216 ~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (342)
T 1b6c_B          216 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPN  295 (342)
T ss_dssp             GGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCG
T ss_pred             ccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcc
Confidence            999999997521100 0233689999999999999999          788865421    223333332 211 1111 


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  163 (488)
                        .....++.+.+||.+||..||++|||+.++++|
T Consensus       296 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          296 RWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             GGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence              112334678999999999999999999999875

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.92  E-value=3.2e-26  Score=228.43  Aligned_cols=151  Identities=20%  Similarity=0.244  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH-HCCCeecccCCCCEEEccCC--------------------cEEEEecCCccccccccC
Q psy9090           1 MSEQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDG--------------------EVKIVDFGLSRETANTFD   59 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH-~~givHrDlkp~NILl~~~~--------------------~vkL~Dfg~a~~~~~~~~   59 (488)
                      +++.+++.++.||+.||+||| ++||+||||||+|||++.++                    .+||+|||+++.....  
T Consensus       158 ~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~--  235 (336)
T 2vuw_A          158 SSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG--  235 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC--
Confidence            578999999999999999999 99999999999999999987                    8999999999865432  


Q ss_pred             ccccccCCCccccchhhcccccCCCCCCCccchhhhHHH-HHHHhcCCCCCCCCCh-HHHHHHHHhCCCCCCC----CCC
Q psy9090          60 KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGIT-AIELGDGKPPFEDMHP-TRALFQIVRNPPPGLY----RAS  133 (488)
Q Consensus        60 ~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~~DiwslGvi-l~elltg~~Pf~~~~~-~~~~~~~~~~~~~~~~----~~~  133 (488)
                         ..+||+.|+|||++.+     .. +.++||||++++ .+++++|..||..... ......+.........    .+.
T Consensus       236 ---~~~gt~~y~aPE~~~g-----~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (336)
T 2vuw_A          236 ---IVVFCDVSMDEDLFTG-----DG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMK  306 (336)
T ss_dssp             ---EEECCCCTTCSGGGCC-----CS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHH
T ss_pred             ---cEEEeecccChhhhcC-----CC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhh
Confidence               4589999999999975     22 779999998776 7889999999854211 1122233322111111    122


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHh-cCcCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELL-EHPFIT  167 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell-~hp~f~  167 (488)
                      .+++++++||.+||..|     |++++| +||||+
T Consensus       307 ~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          307 QIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             HHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             hcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence            46889999999999976     999999 999995

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.90  E-value=1.2e-24  Score=237.36  Aligned_cols=147  Identities=21%  Similarity=0.346  Sum_probs=121.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||.|||++||+||||||+|||++.+ .+||+|||+++.....    ....||+.|+|||++.+  
T Consensus       179 l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~----~~~~gt~~y~aPE~~~~--  251 (681)
T 2pzi_A          179 LPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF----GYLYGTPGFQAPEIVRT--  251 (681)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC----SCCCCCTTTSCTTHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC----CccCCCccccCHHHHcC--
Confidence            5789999999999999999999999999999999999875 8999999999765432    45679999999999875  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                          .++.++|||||||++|+|++|.+||.+....         ..+........++.+.++|.+||..||.+||+..+.
T Consensus       252 ----~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~---------~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~  318 (681)
T 2pzi_A          252 ----GPTVATDIYTVGRTLAALTLDLPTRNGRYVD---------GLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEE  318 (681)
T ss_dssp             ----CSCHHHHHHHHHHHHHHHHSCCCEETTEECS---------SCCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             ----CCCCceehhhhHHHHHHHHhCCCCCcccccc---------cccccccccccCHHHHHHHhhhccCChhhCCCHHHH
Confidence                3478999999999999999999998653210         011111111246789999999999999999999888


Q ss_pred             hcCcCCC
Q psy9090         161 LEHPFIT  167 (488)
Q Consensus       161 l~hp~f~  167 (488)
                      +.|+|+.
T Consensus       319 l~~~l~~  325 (681)
T 2pzi_A          319 MSAQLTG  325 (681)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888874

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.85  E-value=2.1e-22  Score=196.39  Aligned_cols=128  Identities=15%  Similarity=0.063  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccccc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHK   81 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~   81 (488)
                      .+.++..++.||+.||+|||++||+||||||+|||++.+|.+||++++                    |++         
T Consensus       127 ~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~--------------------~~~---------  177 (286)
T 3uqc_A          127 SPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA--------------------TMP---------  177 (286)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC--------------------CCT---------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc--------------------ccC---------
Confidence            355788899999999999999999999999999999999999997443                    222         


Q ss_pred             CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHH---HHHhCC-CCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          82 EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF---QIVRNP-PPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        82 ~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~---~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                         +++.++|||||||++|+|++|+.||.+......+.   +..... .+.......+++.+.++|.+||..||.+| |+
T Consensus       178 ---~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~  253 (286)
T 3uqc_A          178 ---DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SA  253 (286)
T ss_dssp             ---TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CH
T ss_pred             ---CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CH
Confidence               25689999999999999999999998765422110   011111 11111235679999999999999999999 99


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       254 ~el~~  258 (286)
T 3uqc_A          254 STLLN  258 (286)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.79  E-value=1e-21  Score=209.22  Aligned_cols=96  Identities=16%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccccCCCCC
Q psy9090           7 AFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGY   86 (488)
Q Consensus         7 ~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~   86 (488)
                      ..|+.||+.||+|||++|||||||||+|||++.+|.+||+|||+++..........+.+||+.|+|||++.+      .+
T Consensus       342 ~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g------~~  415 (569)
T 4azs_A          342 EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE------NK  415 (569)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC------CC
Confidence            458999999999999999999999999999999999999999999877655455667789999999999974      35


Q ss_pred             CCccchhhhHHHHHHHhcCCCC
Q psy9090          87 DNRIDVWALGITAIELGDGKPP  108 (488)
Q Consensus        87 ~~~~DiwslGvil~elltg~~P  108 (488)
                      ..++|+||+|++++.+.++..|
T Consensus       416 ~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          416 SWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             -------------CCCCTTHHH
T ss_pred             CCcccccccccchhhhccccch
Confidence            6789999999998888766544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.46  E-value=6.9e-15  Score=155.66  Aligned_cols=99  Identities=29%  Similarity=0.373  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCc-------cccccCCCccccchhhcc
Q psy9090           6 IAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK-------KKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         6 ~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~-------~~~~~gt~~y~aPE~l~~   78 (488)
                      +..++.||+.||+|||++||+||||||+|||++.  .+||+|||+++........       .....||+.|+|||++..
T Consensus       433 ~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~  510 (540)
T 3en9_A          433 NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWER  510 (540)
T ss_dssp             CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHH
Confidence            3578999999999999999999999999999998  9999999999876543111       246689999999999975


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPF  109 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf  109 (488)
                      .   ...|+..+|+|+..+-..+.+.++.+|
T Consensus       511 ~---~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          511 F---LEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             H---HHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             H---HHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            2   134777899999988888777776665

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.12  E-value=2.8e-11  Score=117.24  Aligned_cols=59  Identities=25%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +...++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++.             +..+.|||.+.
T Consensus       194 ~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~-------------~~~~~a~e~l~  252 (282)
T 1zar_A          194 NPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE-------------VGEEGWREILE  252 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEE-------------TTSTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeE-------------CCCCCHHHHHH
Confidence            4567999999999999999999999999999999 99999999999853             34568899875

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.89  E-value=6.1e-10  Score=106.25  Aligned_cols=50  Identities=22%  Similarity=0.400  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HCCCeecccCCCCEEEccCCcEEEEecCCcccc
Q psy9090           3 EQHIAFILKEIITGMVFLH-ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET   54 (488)
Q Consensus         3 e~~~~~i~~qil~aL~~LH-~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~   54 (488)
                      +..+..++.||+.+|.||| ++||+||||||+|||++.  .++|+|||++...
T Consensus       169 ~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          169 ELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            3467899999999999999 999999999999999998  9999999998654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.43  E-value=8.5e-08  Score=96.15  Aligned_cols=49  Identities=20%  Similarity=0.311  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC----------cEEEEecCCccc
Q psy9090           5 HIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----------EVKIVDFGLSRE   53 (488)
Q Consensus         5 ~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~----------~vkL~Dfg~a~~   53 (488)
                      .+..++.||+.+|.+||++|||||||||.|||++.+|          .+.|+||+-+..
T Consensus       206 ~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          206 DPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCccc
Confidence            4567899999999999999999999999999998877          388999986654

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.21  E-value=2.3e-08  Score=89.55  Aligned_cols=97  Identities=11%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             ccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChh----hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHH
Q psy9090         221 YSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPH----IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLK  295 (488)
Q Consensus       221 yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph----~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k  295 (488)
                      ...+..++..+++++.+.+.+.+|+..+........++.    +|+++|.+++|.|+..+++.++.  ..|-. ..+.++
T Consensus        46 ~~~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~--~~g~~~~~~ei~  123 (176)
T 2lhi_A           46 EAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLT--SIGEKLTDAEVD  123 (176)
T ss_dssp             HHHHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHH--TTTCCCCHHHHH
T ss_pred             HHHHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HcCcccchHHHH
Confidence            344556677788999999999999987765544332222    99999999999999999998883  33322 367899


Q ss_pred             HHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         296 HLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       296 ~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .||+.++ ++||.|+|+||+.+|.+
T Consensus       124 ~l~~~~d-d~dG~I~~~EF~~~m~k  147 (176)
T 2lhi_A          124 DMLREVS-DGSGEINIQQFAALLSK  147 (176)
T ss_dssp             HHHHHHH-TTSSCBCTTHHHHHHTC
T ss_pred             HHHHhhc-CCCCeEeHHHHHHHHHh
Confidence            9999999 99999999999999865

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=97.88  E-value=1.3e-07  Score=81.76  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=75.5

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKH  296 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~  296 (488)
                      ..+..++..+++++.+.+.+.+|+..+........+.    .+|+.+|.+++|.|+..+.+.++.+ |+  .-..+.++.
T Consensus        46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~--~~~~~e~~~  123 (148)
T 2lmt_A           46 AELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGE--KVTDEEIDE  123 (148)
T ss_dssp             HHHHHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             HHHHHHHHhcccCCCCcccHHHHHHHHHHHhcccCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCc--cccHHHHHH
Confidence            3445556678888889999999997765443333322    2999999999999999999988743 43  123678999


Q ss_pred             HHHHHHHhcCCCchhhhHhhhcch
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      |++.+|.++||.|+|+||+.+|.+
T Consensus       124 l~~~~D~d~dG~I~~~EF~~~m~~  147 (148)
T 2lmt_A          124 MIREADFDGDGMINYEEFVWMISQ  147 (148)
T ss_dssp             HHHHHCCSCCSSEEHHHHHHHHTT
T ss_pred             HHHHhCCCCCCeEeHHHHHHHHhc
Confidence            999999999999999999998754

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=97.83  E-value=3.7e-07  Score=77.73  Aligned_cols=94  Identities=13%  Similarity=0.041  Sum_probs=55.5

Q ss_pred             CCceeeeCCCCCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccC-C-chhhHHHHH
Q psy9090         225 GDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLA-G-KTTSLKHLL  298 (488)
Q Consensus       225 ~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesga-g-kte~~k~i~  298 (488)
                      ..++..+|+++++.|.+.||+..+.........    ..+|..+|++.+|.|+..+.+.++  ...|. . ..+.++.++
T Consensus         6 ~~l~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l--~~~g~~~~~~~e~~~~~   83 (135)
T 3h4s_E            6 KSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNS--GILGIEGMSKEDAQGMV   83 (135)
T ss_dssp             -------------CCCC-----------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHHHG--GGGTCCCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcEeHHHHHHHHHHHccccchHHHHHHHHHHHCCCCCCcCCHHHHHHHH--HHhCCCCCCHHHHHHHH
Confidence            456788899999999999999877553221111    239999999999999999998877  33331 2 267799999


Q ss_pred             HHHHHhcCCCchhhhHhhhcch
Q psy9090         299 KHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       299 ~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +.+|.+++|.|+++||+..+..
T Consensus        84 ~~~D~d~dG~I~~~EF~~~~~~  105 (135)
T 3h4s_E           84 REGDLDGDGALNQTEFCVLMVR  105 (135)
T ss_dssp             HHHCSSCSSSBCHHHHHHHHHH
T ss_pred             HHhCCCCCCCCcHHHHHHHHHH
Confidence            9999999999999999988765

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=97.74  E-value=2.3e-07  Score=84.41  Aligned_cols=115  Identities=17%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQ  278 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q  278 (488)
                      ++..++...+... ........+..++..+|.++++.|.+.||+..+..........   .+|..+|.+.+|.|+..+.+
T Consensus        74 Is~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~  152 (197)
T 3pm8_A           74 LSSQEILDGLKKI-GYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELK  152 (197)
T ss_dssp             ECHHHHHHHHHHH-C----CHHHHHHHHC-------CEEHHHHHHTTCCHHHHCSHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            4444444444322 2223345566777888999999999999998876543322222   39999999999999999999


Q ss_pred             EEEEcccc--cCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         279 HIVLAGET--LAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       279 ~i~~sges--gagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .++  ...  |-+- .+.++.|++.+|.++||.|+++||+.+|.
T Consensus       153 ~~l--~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~  194 (197)
T 3pm8_A          153 RIF--GRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS  194 (197)
T ss_dssp             HHH--C----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred             HHH--HhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence            887  333  2222 56799999999999999999999998875

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=97.72  E-value=5.1e-07  Score=90.15  Aligned_cols=115  Identities=11%  Similarity=0.171  Sum_probs=84.2

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC-Ch---hhHHHHHHHHHHHHhcCCC
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN-EP---HIYAVADSAYQDMMHHEEA  277 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~-~p---h~f~~~d~~~~~~~~~~~~  277 (488)
                      ++..++...|+. +........+..++..+|.++++.|++.||+..+........ ..   .+|+.+|.+.+|.|+..++
T Consensus       319 IS~eELk~aLrs-LG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~d~eeeLreAFk~fDkDgdG~IS~eEL  397 (440)
T 3u0k_A          319 ITTKELGTVMRS-LGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL  397 (440)
T ss_dssp             ECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHTC------CHHHHHHHHHHCTTCSSEECHHHH
T ss_pred             ECHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCcCcCCHHHH
Confidence            555555554443 233334456677888899999999999999987755432222 22   2899999999999999999


Q ss_pred             cEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         278 QHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       278 q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +.++-+ |+.  -..+.++.||+.+|.++||.|+|+||+.+|.
T Consensus       398 r~vL~~lGe~--LSdeEIdeLfke~D~DgDGkIsyeEFvkmMt  438 (440)
T 3u0k_A          398 RHVMTNLGEK--LTDEEVDEMIREADIDGDGQVNYEEFVQMMT  438 (440)
T ss_dssp             HHHHHHHTCC--CCHHHHHHHHHHHCTTCSSSEEHHHHHHHHC
T ss_pred             HHHHHHhCCC--CCHHHHHHHHHHhCCCCCCcEeHHHHHHHhC
Confidence            988743 431  1267899999999999999999999999875

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=97.64  E-value=1.7e-07  Score=80.40  Aligned_cols=95  Identities=8%  Similarity=0.031  Sum_probs=72.2

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC----ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN----EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHL  297 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~----~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i  297 (488)
                      .+..++..+|+++.+.|.+.||+..+........    --.+|+.+|.+.+|.|+..+.+.++-  ..|..- .+.++.|
T Consensus        43 ~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~  120 (143)
T 2obh_A           43 EIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAK--ELGENLTDEELQEM  120 (143)
T ss_dssp             HHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHH--HTTCCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HhCCCCCHHHHHHH
Confidence            3445566778899999999999977643211111    11399999999999999999988773  333222 6789999


Q ss_pred             HHHHHHhcCCCchhhhHhhhcc
Q psy9090         298 LKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       298 ~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++.++.++||.|+++||+.+|.
T Consensus       121 ~~~~D~d~dG~I~~~eF~~~~~  142 (143)
T 2obh_A          121 IDEADRDGDGEVSEQEFLRIMK  142 (143)
T ss_dssp             HHHHCTTSSSSBCHHHHHHHHC
T ss_pred             HHHhCCCCCCcEeHHHHHHHHc
Confidence            9999999999999999998764

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=97.62  E-value=6e-07  Score=78.75  Aligned_cols=88  Identities=11%  Similarity=0.060  Sum_probs=66.3

Q ss_pred             eeCCCCCCCCCCchhhhhccCCCC--CCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHH
Q psy9090         230 FINPNTHLNLYGTKYHFKYKFKSR--SDNEP----HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       230 ~Inp~~~~~i~~~ef~~~~~~~~~--~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~  302 (488)
                      .++.++.+.|.+.+|+..+.....  ....+    .+|+++|++++|.|+..+++.++.+ |+.  -..+.++.||+.++
T Consensus        54 ~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~--ls~~e~~~l~~~~D  131 (159)
T 3i5g_C           54 GTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGER--ITEDQCNDIFTFCD  131 (159)
T ss_dssp             CCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSC--CCHHHHHHHHHHTT
T ss_pred             cccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCC--CCHHHHHHHHHHhC
Confidence            346667788999999987743211  11122    2899999999999999999998843 431  12677999999998


Q ss_pred             H--hcCCCchhhhHhhhcc
Q psy9090         303 F--LGQGAAKVGEKIEKCV  319 (488)
Q Consensus       303 ~--~~~g~~~~~e~i~~~~  319 (488)
                      .  +++|.|+|+||+.+|.
T Consensus       132 ~~~d~dG~I~~~EF~~~m~  150 (159)
T 3i5g_C          132 IREDIDGNIKYEDLMKKVM  150 (159)
T ss_dssp             CCCCSSCCEEHHHHHHHHH
T ss_pred             cCCCCCCeEeHHHHHHHHH
Confidence            5  7899999999998764

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=97.60  E-value=1.4e-06  Score=78.77  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=82.4

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCC--CChhhHHHHHHHHHHHHhcCCCcE
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD--NEPHIYAVADSAYQDMMHHEEAQH  279 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~--~~ph~f~~~d~~~~~~~~~~~~q~  279 (488)
                      ++..++...+... ..... ..+..++..+|.++++.|.+.||+..+.......  .-..+|..+|.+++|.|+..+.+.
T Consensus        69 i~~~El~~~l~~~-g~~~~-~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~  146 (191)
T 3k21_A           69 ITKEQLKKGLEKD-GLKLP-YNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAH  146 (191)
T ss_dssp             ECHHHHHHHHHHT-TCCCC-TTHHHHHHHHCTTCSSSEEHHHHHHHHSCGGGCCHHHHHHHHHHHSTTCSSCBCHHHHHH
T ss_pred             CcHHHHHHHHHHc-CCCcH-HHHHHHHHHhCCCCCCeEeHHHHHHHHHhhhhccHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            4444444444432 11122 5566678888999999999999998875543211  111389999999999999999998


Q ss_pred             EEEcccccCCch----hhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         280 IVLAGETLAGKT----TSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       280 i~~sgesgagkt----e~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++-.+..|..-+    +.++.+++.+|.++||.|+++||+.+|.
T Consensus       147 ~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  190 (191)
T 3k21_A          147 ILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK  190 (191)
T ss_dssp             HHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred             HHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence            884433332223    3589999999999999999999998764

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=97.58  E-value=2.5e-06  Score=68.64  Aligned_cols=67  Identities=6%  Similarity=-0.047  Sum_probs=53.5

Q ss_pred             hhHHHHH-HHHH-HHHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhh
Q psy9090         259 HIYAVAD-SAYQ-DMMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI  325 (488)
Q Consensus       259 h~f~~~d-~~~~-~~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leaf  325 (488)
                      .+|..+| +++. |.|+..|++.++-+  |+ -|... .+.++.||+.+|.++||.|+|+||+.+|..+.-|.
T Consensus        14 ~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~~~~~   86 (101)
T 3nso_A           14 CTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYC   86 (101)
T ss_dssp             HHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence            3899998 8886 99999999988832  11 12223 67799999999999999999999999988766553

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=97.57  E-value=8.3e-07  Score=77.33  Aligned_cols=82  Identities=10%  Similarity=0.082  Sum_probs=64.5

Q ss_pred             CCCCCCchhhhhccCCCCCCCChh----hHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCch
Q psy9090         236 HLNLYGTKYHFKYKFKSRSDNEPH----IYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAK  310 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~~~ph----~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~  310 (488)
                      .+.|++++|+..+........++.    +|+++|++++|.|+..+++.++.+ |+.  -..+.++.||+.++.+ ||.|+
T Consensus        62 ~~~i~f~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~--ls~~ei~~~~~~~D~~-dG~I~  138 (153)
T 3i5g_B           62 PGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDN--FSKEEIKNVWKDAPLK-NKQFN  138 (153)
T ss_dssp             SSCCCSHHHHHTTTTTTTTCCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSC--CCHHHHHHHHTTCCEE-TTEEC
T ss_pred             cCCccHHHHHHHHHhhhcccccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCc--CCHHHHHHHHHHhCCC-cCEEc
Confidence            345889999988866544443332    999999999999999999998843 431  1267799999999976 99999


Q ss_pred             hhhHhhhcch
Q psy9090         311 VGEKIEKCVN  320 (488)
Q Consensus       311 ~~e~i~~~~~  320 (488)
                      |+||+.+|.+
T Consensus       139 y~EF~~~m~~  148 (153)
T 3i5g_B          139 YNKMVDIKGK  148 (153)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998853

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.40  E-value=6.4e-05  Score=72.82  Aligned_cols=86  Identities=15%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CCeecccCCCCEEEcc--CCcEEEEecCCccccccccCccccccCCCccccchhhc----ccccCC-----CCCCCccch
Q psy9090          24 HVIHRDLRGSNVLLTK--DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR----CGHKEV-----DGYDNRIDV   92 (488)
Q Consensus        24 givHrDlkp~NILl~~--~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~----~~~~~~-----~~~~~~~Di   92 (488)
                      .++|+|++|.||+++.  .+.+.++||+.+.......+........ .-..|+...    ......     .......+.
T Consensus       192 ~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~-~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~  270 (304)
T 3sg8_A          192 CLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDD-EEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKY  270 (304)
T ss_dssp             EEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTT-TSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             eeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhc-cccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence            3799999999999998  4567899999876533211111100000 002222211    100000     001122589


Q ss_pred             hhhHHHHHHHhcCCCCCC
Q psy9090          93 WALGITAIELGDGKPPFE  110 (488)
Q Consensus        93 wslGvil~elltg~~Pf~  110 (488)
                      |+++.++|.+.+|..+|.
T Consensus       271 ~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          271 WSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHH
Confidence            999999999999988763

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=97.39  E-value=2.3e-06  Score=68.81  Aligned_cols=59  Identities=14%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|++.+|.|+..+.+.++-+  .|-. ..+.++.|++.+|.+++|.|+|+||+.+|.|
T Consensus        41 ~F~~~D~d~~G~I~~~El~~~l~~--lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m~P  100 (100)
T 2lv7_A           41 AFKVFDRDGNGFISKQELGTAMRS--LGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGP  100 (100)
T ss_dssp             HHHHTCSSCSSCBCHHHHHHHHHH--HTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHTCC
T ss_pred             HHHHHcCCCCCcCCHHHHHHHHHH--hCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHhCc
Confidence            899999999999999999988733  2322 2677999999999999999999999999876

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=97.31  E-value=3e-06  Score=75.51  Aligned_cols=97  Identities=6%  Similarity=-0.000  Sum_probs=74.8

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccc----cCCc-hhhHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGET----LAGK-TTSLKHL  297 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sges----gagk-te~~k~i  297 (488)
                      .+..++..+|.++++.|.+.||+..+....   .-..+|..+| +.+|.|+..+.+.++  ...    |-.- .+.++.|
T Consensus        47 ~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~---~l~~aF~~fD-d~~G~I~~~El~~~l--~~l~~~~G~~~~~~~~~~l  120 (174)
T 2i7a_A           47 ECRSLVALMELKVNGRLDQEEFARLWKRLV---HYQHVFQKVQ-TSPGVLLSSDLWKAI--ENTDFLRGIFISRELLHLV  120 (174)
T ss_dssp             HHHHHHHHHCSSCSSEECHHHHHHHHHHHH---HHHHHHHHHC-SBTTBEEGGGHHHHH--HTCGGGTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCHHHHHHHHHHHH---HHHHHHHHhc-CCCCcCCHHHHHHHH--HHhHhccCCCCCHHHHHHH
Confidence            455677788999999999999998764321   1124999999 999999999999887  332    3222 5778999


Q ss_pred             HHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         298 LKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       298 ~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      ++.++ +++|.|+++||+.++..   +.+||-
T Consensus       121 ~~~~d-d~dG~I~~~EF~~~~~~~~~~~~~F~  151 (174)
T 2i7a_A          121 TLRYS-DSVGRVSFPSLVCFLMRLEAMAKTFR  151 (174)
T ss_dssp             HHHHS-CTTSEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHc-CCCCeEcHHHHHHHHHHHHHHHHHHH
Confidence            99999 99999999999988764   445553

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=97.22  E-value=2.5e-06  Score=79.44  Aligned_cols=105  Identities=10%  Similarity=0.154  Sum_probs=75.7

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-cc-c--------cC
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-GE-T--------LA  288 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-ge-s--------ga  288 (488)
                      .++..++..+|.++++.|.+.||.............   ..+|..+|.+++|.|+..+...++.+ |+ .        |.
T Consensus       102 ~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~  181 (229)
T 3dd4_A          102 TYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKE  181 (229)
T ss_dssp             HHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcch
Confidence            344556777889999999999999876433221111   23999999999999999888876643 10 1        11


Q ss_pred             -CchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         289 -GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       289 -gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                       -..+.++.+++.+|.++||.++++||+..+..   ++++|.
T Consensus       182 ~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~~~~~~~  223 (229)
T 3dd4_A          182 DAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQ  223 (229)
T ss_dssp             --CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHhCHHHHHHHH
Confidence             12577999999999999999999999987764   555553

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=97.20  E-value=4.1e-06  Score=67.96  Aligned_cols=85  Identities=13%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             CCCCCCCchhhhhccCCCCCC-CChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCC-chhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSRSD-NEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAG-KTTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~-~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgag-kte~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+....... .-..+|..+|.+.+|.|+..+.+.++-+ |..|.. ..+.++.+++.+|.+++|.+++
T Consensus        21 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~  100 (109)
T 3fs7_A           21 AADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGV  100 (109)
T ss_dssp             STTCCCHHHHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred             CCCcCcHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcH
Confidence            567899999998875422110 0113999999999999999998887732 211322 2678999999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+..+.
T Consensus       101 ~EF~~~~~  108 (109)
T 3fs7_A          101 EEFQSLVK  108 (109)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998764

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}

Probab=97.20  E-value=8.4e-06  Score=67.69  Aligned_cols=64  Identities=11%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEc---ccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLA---GETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~s---gesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|..+|.+ .|.|+..|++.++-+   .--|... .+.++.||+.+|.|+||.|+|+||+.+|..+.-|
T Consensus        20 ~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~~~   87 (121)
T 4drw_A           20 TFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIA   87 (121)
T ss_dssp             TTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHH
Confidence            77777777 799999999887732   0012223 6789999999999999999999999999887743

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=97.16  E-value=3.9e-06  Score=77.87  Aligned_cols=107  Identities=11%  Similarity=0.154  Sum_probs=78.9

Q ss_pred             ccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-----cccc-----
Q psy9090         221 YSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-----GETL-----  287 (488)
Q Consensus       221 yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-----gesg-----  287 (488)
                      ...+..++..+|.++++.|.+.||...+.........   ..+|+.+|.+.+|.|+..+.+.++..     |+..     
T Consensus        88 ~~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~  167 (224)
T 1s1e_A           88 STYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK  167 (224)
T ss_dssp             HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred             HHHHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCC
Confidence            3455567788899999999999999876533211111   13899999999999999988877643     3210     


Q ss_pred             -CCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         288 -AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       288 -agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                       ....+.++.+++.+|.++||.|+++||+..+..   ++++|+.
T Consensus       168 ~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~l~~~l~~  211 (224)
T 1s1e_A          168 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL  211 (224)
T ss_dssp             SSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhcC
Confidence             001377999999999999999999999988764   7788774

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=97.16  E-value=1.6e-06  Score=74.47  Aligned_cols=94  Identities=11%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCC----ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN----EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLL  298 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~----~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~  298 (488)
                      +..++..+|.++++.|.+.||+..+........    --.+|..+|.+++|.|+..+.+.++-  ..|-. ..+.++.|+
T Consensus        48 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~~  125 (148)
T 1exr_A           48 LQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMT--NLGEKLTDDEVDEMI  125 (148)
T ss_dssp             HHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHH--HTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCcHHHHHHHHHhcccCCCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHH--HhCCCCCHHHHHHHH
Confidence            445566778888899999999987643211110    11399999999999999999988772  22222 267899999


Q ss_pred             HHHHHhcCCCchhhhHhhhcc
Q psy9090         299 KHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       299 ~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +.++.+++|.|+++||+.+|.
T Consensus       126 ~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1exr_A          126 READIDGDGHINYEEFVRMMV  146 (148)
T ss_dssp             HHHCSSSSSSBCHHHHHHHHH
T ss_pred             HHhCCCCCCcEeHHHHHHHHc
Confidence            999999999999999998874

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=97.14  E-value=3.1e-06  Score=68.70  Aligned_cols=85  Identities=12%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CCCCCCchhhhhccCCCCC-CCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchhh
Q psy9090         236 HLNLYGTKYHFKYKFKSRS-DNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKVG  312 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~-~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~~  312 (488)
                      ++.|.+.||+..+...... ..-..+|..+|.+.+|.|+..+.+.++-+ +..|... .+.++.+++.+|.+++|.++++
T Consensus        21 ~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~  100 (109)
T 5pal_A           21 PGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD  100 (109)
T ss_dssp             TTCCCHHHHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHH
T ss_pred             CCcCcHHHHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence            5778999999887543111 00123999999999999999998877733 2113222 6779999999999999999999


Q ss_pred             hHhhhcch
Q psy9090         313 EKIEKCVN  320 (488)
Q Consensus       313 e~i~~~~~  320 (488)
                      ||+..+..
T Consensus       101 eF~~~~~~  108 (109)
T 5pal_A          101 EFAKMVAQ  108 (109)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988754

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=97.12  E-value=1.9e-05  Score=63.82  Aligned_cols=65  Identities=6%  Similarity=-0.013  Sum_probs=51.5

Q ss_pred             hHHHHH-HHHH-HHHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVAD-SAYQ-DMMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d-~~~~-~~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|..+| +++. |.|+..+++.++-+  |+ .|... .+.++.||+.+|.++||.|+|+||+.+|..++-|
T Consensus        18 aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~~~~   88 (104)
T 3zwh_A           18 TFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSIAMM   88 (104)
T ss_dssp             HHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence            899998 6774 79999999988832  22 12222 6789999999999999999999999998876644

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=97.11  E-value=6.3e-06  Score=71.45  Aligned_cols=117  Identities=9%  Similarity=0.064  Sum_probs=80.1

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCC---CCCC----hhhHHHHHHHHHHHHh
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSR---SDNE----PHIYAVADSAYQDMMH  273 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~---~~~~----ph~f~~~d~~~~~~~~  273 (488)
                      .++..++...+... ........+..++..+|.++++.|.+.||+..+.....   ....    ..+|..+|.+.+|.|+
T Consensus        35 ~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~  113 (161)
T 1dtl_A           35 SISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYID  113 (161)
T ss_dssp             SBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEE
T ss_pred             cCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCcCc
Confidence            34444444444321 22223334556677888999999999999987754321   1111    2299999999999999


Q ss_pred             cCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         274 HEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       274 ~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ..+.+.++  ...|.. ..+.++.+++.++.+++|.++++||+..+..
T Consensus       114 ~~El~~~l--~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  159 (161)
T 1dtl_A          114 LEELKIML--QATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG  159 (161)
T ss_dssp             HHHHGGGG--TTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred             HHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence            99888776  222322 2677999999999999999999999988754

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.10  E-value=0.0035  Score=57.03  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |+|+++|.++.|.+.+|.-+-. ..-..+=+.|..|++..+|.|-+.+ ..+.            .....+.|||...  
T Consensus        46 lsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------~~~~~~~~pe~~~--  110 (229)
T 2yle_A           46 INEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP-AADD------------AGEPPPVAGKLGY--  110 (229)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC-C------------------------CCSS--
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc-cccc------------ccccCCCChhhcc--
Confidence            6899999999999999877622 2222444567899999999987654 1110            1122456888763  


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhccc
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEK  149 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~  149 (488)
                          ...+.+.-|||||+++|.-+--..|=                    ..+..+|+.+.+||..|...
T Consensus       111 ----~~~te~~~IysLG~tLY~ALDygL~e--------------------~eE~eLS~~LE~LL~~Mt~~  156 (229)
T 2yle_A          111 ----SQCMETEVIESLGIIIYKALDYGLKE--------------------NEERELSPPLEQLIDHMANT  156 (229)
T ss_dssp             ----SSSCHHHHHHHHHHHHHHHHTTTCCT--------------------TEEECCCHHHHHHHHHHTTC
T ss_pred             ----ccchHHHHHHHHHHHHHHHhhcCCCc--------------------ccchhhCHHHHHHHHHHHhc
Confidence                23457888999999999987533221                    12456799999999999765

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=97.10  E-value=7.6e-06  Score=73.62  Aligned_cols=95  Identities=9%  Similarity=0.041  Sum_probs=73.5

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCC---CChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD---NEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLK  299 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~---~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~  299 (488)
                      .+..++..+|.++++.|.+.||+..+.......   .-..+|..+|.+.+|.|+..+.+.++  ...|. ..+.++.+++
T Consensus        47 ~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l--~~~g~-~~~~~~~~~~  123 (188)
T 1s6i_A           47 EIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQAC--KDFGL-DDIHIDDMIK  123 (188)
T ss_dssp             HHHHHHHHTCTTCSSEECHHHHHHHHTTSSSSCCCCSTHHHHHHTTTTCSSEEEHHHHHHTT--TTTTC-CTTHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCeEeHHHHHHHHHHHhccCHHHHHHHHHHHHCCCCCCcCcHHHHHHHH--HHcCC-CHHHHHHHHH
Confidence            344566777888899999999998775433222   22349999999999999999888776  33331 3567999999


Q ss_pred             HHHHhcCCCchhhhHhhhcch
Q psy9090         300 HLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|.+++|.++++||+..+..
T Consensus       124 ~~D~d~dG~Is~~EF~~~~~~  144 (188)
T 1s6i_A          124 EIDQDNDGQIDYGEFAAMMRK  144 (188)
T ss_dssp             HHCSSSSSEEETTHHHHTTSC
T ss_pred             HHCCCCCCcEeHHHHHHHHHH
Confidence            999999999999999998753

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=97.10  E-value=5.3e-06  Score=71.74  Aligned_cols=96  Identities=8%  Similarity=0.059  Sum_probs=73.3

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCC--------CCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhh
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSR--------SDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTS  293 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~--------~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~  293 (488)
                      .+..++..+|.++.+.|.+.||+..+.....        ...-..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.
T Consensus        51 ~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~  128 (158)
T 2jnf_A           51 TIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILA--ELDETLSSED  128 (158)
T ss_dssp             HHHHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHH--HHCTTCCHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH--HhCCcCCHHH
Confidence            4455667778888999999999987753221        11122399999999999999999888773  33322 2678


Q ss_pred             HHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         294 LKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       294 ~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ++.+++.++.+++|.++++||+..+..
T Consensus       129 ~~~~~~~~D~d~dg~i~~~eF~~~~~~  155 (158)
T 2jnf_A          129 LDAMIDEIDADGSGTVDFEEFMGVMTG  155 (158)
T ss_dssp             HHHHHHHHCSSCCSEECSHHHHHHTSS
T ss_pred             HHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence            999999999999999999999988753

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=97.08  E-value=1.3e-05  Score=68.96  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc--ccccCCchhhHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA--GETLAGKTTSLKH  296 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s--gesgagkte~~k~  296 (488)
                      .+..++..+|.++++.|.+.||+..+..........    .+|..+|.+.+|.|+..+.+.++-.  |+  .-..+.++.
T Consensus        39 ~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~--~~~~~~~~~  116 (155)
T 3ll8_B           39 LVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGN--NLKDTQLQQ  116 (155)
T ss_dssp             THHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGG--GSCHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcc--CCCHHHHHH
Confidence            455567778899999999999998876543222222    2999999999999999998887733  33  112567788


Q ss_pred             HHHH----HHHhcCCCchhhhHhhhcchh
Q psy9090         297 LLKH----LIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       297 i~~~----~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +++.    ++.+++|.++++||+..+..+
T Consensus       117 ~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  145 (155)
T 3ll8_B          117 IVDKTIINADKDGDGRISFEEFCAVVGGL  145 (155)
T ss_dssp             HHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence            8888    999999999999999887653

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.07  E-value=3.3e-06  Score=71.66  Aligned_cols=95  Identities=6%  Similarity=0.015  Sum_probs=72.1

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKH  296 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~  296 (488)
                      ..+..++..+|.++.+.|.+.||+..+.........    ..+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.
T Consensus        42 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l--~~~g~~~~~~~~~~  119 (142)
T 2bl0_C           42 AAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDAL--LNLGDRLKPHEFAE  119 (142)
T ss_dssp             HHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHTTCCCHHHHHHHHHHTCCSSCSCEEHHHHHHHH--HHSSSCCCHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCeeeHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHH
Confidence            345556777888899999999999877642111111    239999999999999999988777  233322 3677999


Q ss_pred             HHHHHHHhcCCCchhhhHhhhcc
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +++.++ +++|.++++||+..+.
T Consensus       120 ~~~~~d-~~dg~i~~~eF~~~~~  141 (142)
T 2bl0_C          120 FLGITE-TEKGQIRYDNFINTMF  141 (142)
T ss_dssp             HHHHHC-CSSSEECSHHHHTTTC
T ss_pred             HHHHhC-CCCCcEeHHHHHHHHc
Confidence            999999 9999999999998875

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=97.05  E-value=3.9e-06  Score=74.72  Aligned_cols=126  Identities=10%  Similarity=0.121  Sum_probs=85.1

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQ  278 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q  278 (488)
                      ++..++...+............+..++..+|.++++.|.+.||...+.........   ..+|..+|.+.+|.|+..+.+
T Consensus        36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~  115 (183)
T 1s6c_A           36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMM  115 (183)
T ss_dssp             ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            44444444444332222334455667788899999999999999876532211111   239999999999999988888


Q ss_pred             EEEEc-----cccc------CCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         279 HIVLA-----GETL------AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       279 ~i~~s-----gesg------agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                      .++..     |+..      ....+.++.+++.+|.+++|.++++||+..+..   ++++|+.
T Consensus       116 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~  178 (183)
T 1s6c_A          116 DIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQL  178 (183)
T ss_dssp             HHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHH
Confidence            77633     3210      011377999999999999999999999988764   7777764

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=97.02  E-value=2.1e-05  Score=62.13  Aligned_cols=66  Identities=6%  Similarity=-0.025  Sum_probs=51.0

Q ss_pred             hhHHHHH-HHH-HHHHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         259 HIYAVAD-SAY-QDMMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       259 h~f~~~d-~~~-~~~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      .+|..+| +++ .|.|+..+++.++-+  |+ .|..+ .+.++.||+.+|.++||.|+|+||+.+|..+.-|
T Consensus        14 ~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~~~~   85 (93)
T 4eto_A           14 STFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMM   85 (93)
T ss_dssp             HHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHH
Confidence            3899998 577 479999999988742  22 12122 6679999999999999999999999998876544

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=97.02  E-value=2.3e-06  Score=79.58  Aligned_cols=88  Identities=9%  Similarity=-0.073  Sum_probs=65.9

Q ss_pred             CCCCCCCCCCchhhhhccCCCCCC---CChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCC
Q psy9090         232 NPNTHLNLYGTKYHFKYKFKSRSD---NEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQG  307 (488)
Q Consensus       232 np~~~~~i~~~ef~~~~~~~~~~~---~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g  307 (488)
                      |.++++.|.+.||+..+.......   .-..+|..+|.+.+|.|+..+.+.++-. ++.|.-. +.++.+++.+|.++||
T Consensus       107 D~d~~G~I~~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~-~e~~~~~~~~D~d~dG  185 (226)
T 2lvv_A          107 KVKGVGEEDLVEFLEFRLMLCYIYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDI-TDATTVFNEIDTNGSG  185 (226)
T ss_dssp             HHSCCCCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCC-CSCHHHHHHHCCSCSS
T ss_pred             CCCCCCcCCHHHHHHHHHHHHhccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCH-HHHHHHHHHhCCCCCC
Confidence            788889999999998432211111   1123899999999999999999988743 3323322 3489999999999999


Q ss_pred             CchhhhHhhhcch
Q psy9090         308 AAKVGEKIEKCVN  320 (488)
Q Consensus       308 ~~~~~e~i~~~~~  320 (488)
                      .|+++||+.+|..
T Consensus       186 ~Is~~EF~~~~~~  198 (226)
T 2lvv_A          186 VVTFDEFSCWAVT  198 (226)
T ss_dssp             CEEHHHHHHHHHH
T ss_pred             cEeHHHHHHHHHh
Confidence            9999999988754

>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A

Probab=97.02  E-value=1.6e-05  Score=66.35  Aligned_cols=80  Identities=4%  Similarity=-0.072  Sum_probs=47.9

Q ss_pred             CCCCCCchhhh-----hccCCCCCC----CChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC
Q psy9090         236 HLNLYGTKYHF-----KYKFKSRSD----NEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ  306 (488)
Q Consensus       236 ~~~i~~~ef~~-----~~~~~~~~~----~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~  306 (488)
                      ++.|+++||+.     .+.......    .--.+|+++|    |.|+..+.+.++  ...|. ..+.++.|++.+|.+++
T Consensus        22 ~g~i~f~EF~~~~~~~~~~~~~~~~~~~~~l~~aF~~fD----G~I~~~El~~~l--~~lG~-t~~ei~~~~~~~D~d~d   94 (123)
T 2kld_A           22 KAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQGG----GKLNFDELRQDL--KGKGH-TDAEIEAIFTKYDQDGD   94 (123)
T ss_dssp             -----------------------------CCSCSSTTTT----TCEEHHHHHHHT--TTCCS-SHHHHHHHHHHHSSSSC
T ss_pred             CCCccHHHHHhHhHHHHHHHhhcChhHHHHHHHHHHHhC----CCCCHHHHHHHH--HHhCC-CHHHHHHHHHHHcCCCC
Confidence            46788999998     433221111    1123899998    899999988877  33333 56779999999999999


Q ss_pred             CCchhhhHhhhcchhh
Q psy9090         307 GAAKVGEKIEKCVNVI  322 (488)
Q Consensus       307 g~~~~~e~i~~~~~~l  322 (488)
                      |.++++||+.+|..+.
T Consensus        95 G~I~~~EF~~~~~~~~  110 (123)
T 2kld_A           95 QELTEHEHQQMRDDLE  110 (123)
T ss_dssp             CEECSHHHHHCSCTTT
T ss_pred             CcCcHHHHHHHHHHHH
Confidence            9999999999986655

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=96.99  E-value=5.5e-06  Score=67.05  Aligned_cols=85  Identities=13%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             CCCCCCCchhhhhccCCCCC-CCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCC-chhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSRS-DNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAG-KTTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~-~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgag-kte~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+...... ..-..+|..+|.+.+|.|+..+.+.++-. |..|.. ..+.++.+++.++.+++|.+++
T Consensus        20 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~   99 (108)
T 1rro_A           20 DPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGA   99 (108)
T ss_dssp             STTCCCHHHHHHHHSGGGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEH
T ss_pred             CCCCcCHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcH
Confidence            55778999999877422110 00123999999999999999998877732 221322 2678999999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+..+.
T Consensus       100 ~eF~~~~~  107 (108)
T 1rro_A          100 DEFQEMVH  107 (108)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99998764

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=96.97  E-value=3.9e-06  Score=75.14  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=73.8

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLK  299 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~  299 (488)
                      +..++..+|.++++.|.+.||+..+.........   ..+|..+|.+.+|.|+..+.+.++-    |.+ ..+.++.+++
T Consensus        89 ~~~~~~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~----~~~~~~~~~~~~~~  164 (191)
T 3khe_A           89 VDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFG----VTEVDDETWHQVLQ  164 (191)
T ss_dssp             HHHHHHHTCTTCSSSEEHHHHHHHHSCHHHHCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT----SSCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCCHHHHHHHHHHhcccchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc----cCCCCHHHHHHHHH
Confidence            3445566788888999999999876543222211   2399999999999999999888772    333 3677999999


Q ss_pred             HHHHhcCCCchhhhHhhhcchhh
Q psy9090         300 HLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|.+++|.|+++||+..+..++
T Consensus       165 ~~D~~~dg~i~~~eF~~~~~~~~  187 (191)
T 3khe_A          165 ECDKNNDGEVDFEEFVEMMQKIC  187 (191)
T ss_dssp             HHCTTCSSSEEHHHHHHHHHHHH
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999987764

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=96.95  E-value=3.8e-06  Score=72.79  Aligned_cols=96  Identities=10%  Similarity=0.103  Sum_probs=73.5

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC----ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN----EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKH  296 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~----~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~  296 (488)
                      ..+..++..+|+++.+.|.+.||+..+........    -..+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.
T Consensus        59 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l--~~~~~~~~~~~~~~  136 (161)
T 3fwb_A           59 REILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVA--KELGETLTDEELRA  136 (161)
T ss_dssp             HHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHH--HHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHH--HHhCCCCCHHHHHH
Confidence            34555677778899999999999987754321111    1239999999999999999988877  233322 3678999


Q ss_pred             HHHHHHHhcCCCchhhhHhhhcc
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +++.++.+++|.|+++||+..+.
T Consensus       137 ~~~~~d~~~~g~i~~~eF~~~~~  159 (161)
T 3fwb_A          137 MIEEFDLDGDGEINENEFIAICT  159 (161)
T ss_dssp             HHHTTCSSSSSSEEHHHHHHHHH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHh
Confidence            99999999999999999998775

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=96.94  E-value=8.1e-06  Score=66.04  Aligned_cols=85  Identities=15%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             CCCCCCCchhhhhccCCCCC-CCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSRS-DNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~-~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+...... ..-..+|..+|.+.+|.|+..+.+.++-. |..|... .+.++.+++.++.+++|.+++
T Consensus        20 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~   99 (108)
T 2pvb_A           20 AADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGV   99 (108)
T ss_dssp             STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred             CCCcCcHHHHHHHHhCChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeH
Confidence            45678999999877432110 00123999999999999999998877732 2113222 677999999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+..+.
T Consensus       100 ~eF~~~~~  107 (108)
T 2pvb_A          100 DEFAAMIK  107 (108)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=96.94  E-value=3.1e-06  Score=74.16  Aligned_cols=117  Identities=8%  Similarity=0.027  Sum_probs=81.0

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCC----CCChhhHHHHHHHHHHHHhcCC
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS----DNEPHIYAVADSAYQDMMHHEE  276 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~----~~~ph~f~~~d~~~~~~~~~~~  276 (488)
                      .++..++...+.. .........+..++..+|.++++.|.+.||+..+......    ..-..+|..+|.+.+|.|+..+
T Consensus        44 ~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e  122 (169)
T 3qrx_A           44 TIDAKELKVAMRA-LGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKD  122 (169)
T ss_dssp             EECHHHHHHHHHH-TSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHH
T ss_pred             cCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCCCcCCHHH
Confidence            3444444444432 2222233445566777888999999999999876532111    1112389999999999999999


Q ss_pred             CcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         277 AQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       277 ~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+.++  ...|..- .+.++.+++.+|.+++|.++++||+..+.+
T Consensus       123 l~~~l--~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  165 (169)
T 3qrx_A          123 LRRVA--KELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK  165 (169)
T ss_dssp             HHHHH--HHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred             HHHHH--HHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence            88877  3333222 678999999999999999999999988754

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=96.91  E-value=1.6e-05  Score=71.07  Aligned_cols=127  Identities=14%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCC
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEA  277 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~  277 (488)
                      .++..++...+............+..++..+|.++++.|...||...+..........   .+|..+|.+.+|.|+..+.
T Consensus        42 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef  121 (190)
T 1fpw_A           42 QLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEM  121 (190)
T ss_dssp             CEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEHHHH
T ss_pred             cCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHHccCCcHHHHHHHHHHhcCCCCCcCcHHHH
Confidence            3444444444443322222334456678888999999999999998765332222222   3899999999998888887


Q ss_pred             cEEEEc-----ccc-----c-CCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         278 QHIVLA-----GET-----L-AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       278 q~i~~s-----ges-----g-agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                      ..++..     |..     + .-..+.++.+++.+|.+++|.|+++||+..+..   +++.|+.
T Consensus       122 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~  185 (190)
T 1fpw_A          122 LTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALNL  185 (190)
T ss_dssp             HHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHSSTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCcccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhChHHHHHHhh
Confidence            766632     211     0 012567899999999999999999999987654   6676664

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=96.91  E-value=0.00083  Score=66.50  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH----------------------------------------------------------
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE----------------------------------------------------------   22 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~----------------------------------------------------------   22 (488)
                      +++.+...++.+++..|..||+                                                          
T Consensus       136 l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  215 (359)
T 3dxp_A          136 MSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADL  215 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCC
Confidence            3567788899999999999997                                                          


Q ss_pred             CCCeecccCCCCEEEccCCc--EEEEecCCccc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGE--VKIVDFGLSRE   53 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~--vkL~Dfg~a~~   53 (488)
                      ..++|+|++|.|||++.++.  +.|+||+.+..
T Consensus       216 ~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             ceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            35899999999999997753  68999998864

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=96.91  E-value=1.8e-05  Score=71.18  Aligned_cols=122  Identities=11%  Similarity=0.062  Sum_probs=85.9

Q ss_pred             hccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcE
Q psy9090         200 ETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQH  279 (488)
Q Consensus       200 ~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~  279 (488)
                      ..++.+++...+. ..........+..++..+|.++++.|.+.||...+...   ..-..+|..+|.+.+|.|+..+.+.
T Consensus        42 G~I~~~El~~~l~-~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~---~~~~~~F~~~D~d~~G~i~~~e~~~  117 (191)
T 1y1x_A           42 GAISVPELNAALS-SAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI---LSMREGFRKRDSSGDGRLDSNEVRA  117 (191)
T ss_dssp             SSBCHHHHHHHHC-BTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHHHHCTTSSSCBCHHHHHH
T ss_pred             CcCcHHHHHHHHH-HcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH---HHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            3455555555552 12122233445566778899999999999999876532   1123499999999999999999888


Q ss_pred             EEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         280 IVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       280 i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                      ++  ...|.. ..+.++.+++.++.+++|.++++||+..+..   +.++|-.
T Consensus       118 ~l--~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~~~~F~~  167 (191)
T 1y1x_A          118 AL--LSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAF  167 (191)
T ss_dssp             HH--HTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHHHHHHHHHHH
Confidence            77  222322 3678999999999999999999999988763   4455543

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=96.90  E-value=1.1e-05  Score=65.50  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=62.4

Q ss_pred             CCCCCCCchhhhhccCCCCC-CCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSRS-DNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~-~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+...... ..-..+|..+|.+.+|.|+..+.+.++-. |..|... .+.++.+++.++.+++|.+++
T Consensus        21 ~~g~i~~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~  100 (110)
T 1pva_A           21 AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGI  100 (110)
T ss_dssp             STTCCCHHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred             CCCcCcHHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcH
Confidence            45678899999877421100 00113999999999999999998887732 2113222 678999999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+..+.
T Consensus       101 ~eF~~~~~  108 (110)
T 1pva_A          101 DEFETLVH  108 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=96.89  E-value=2.4e-05  Score=69.96  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCcEEEEc-----ccc-----cC-
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQHIVLA-----GET-----LA-  288 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q~i~~s-----ges-----ga-  288 (488)
                      .+..++..+|.++++.|.+.||...+..........   .+|..+|.+.+|.|+..+...++..     |+.     +. 
T Consensus        64 ~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~  143 (190)
T 2l2e_A           64 FAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDED  143 (190)
T ss_dssp             HHHHHHHHHCSSSTTCEEHHHHHHHHTTSSCSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred             HHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccc
Confidence            445567778899999999999998776543322111   2899999999999988888776633     221     11 


Q ss_pred             CchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhccc
Q psy9090         289 GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGNAG  329 (488)
Q Consensus       289 gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgna~  329 (488)
                      -..+.++.+++.+|.+++|.|+++||+..+..   ++++|+.--
T Consensus       144 ~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~l~~~d  187 (190)
T 2l2e_A          144 TPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSLYD  187 (190)
T ss_dssp             CTHHHHHHHHHHHTCCSSCCBCHHHHHHHHHTCTHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhCcHHHHHHHHHh
Confidence            12567999999999999999999999987653   777776543

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=96.86  E-value=3.8e-06  Score=71.82  Aligned_cols=95  Identities=12%  Similarity=0.073  Sum_probs=69.2

Q ss_pred             ccCCceeee-CCCCCCCCCCchhhhhccCC------CCCCCCh---hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-ch
Q psy9090         223 FVGDVLLFI-NPNTHLNLYGTKYHFKYKFK------SRSDNEP---HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KT  291 (488)
Q Consensus       223 ~v~~il~~I-np~~~~~i~~~ef~~~~~~~------~~~~~~p---h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kt  291 (488)
                      .+..++..+ |+++++.|.+.||+..+...      .......   .+|..+|.+.+|.|+..+.+.++-  ..|.. ..
T Consensus        41 ~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~  118 (148)
T 1m45_A           41 LVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLT--GLGEKLTD  118 (148)
T ss_dssp             HHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHH--HSTTCCCH
T ss_pred             HHHHHHHHhhCCCCCCeEcHHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcCCHHHHHHHHH--HcCCCCCH
Confidence            344556667 88888999999999877654      2112222   289999999999999998887773  22222 26


Q ss_pred             hhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         292 TSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       292 e~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +.++.|++.++.+++|.++++||+..+.
T Consensus       119 ~~~~~~~~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1m45_A          119 AEVDELLKGVEVDSNGEIDYKKFIEDVL  146 (148)
T ss_dssp             HHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            7799999999999999999999998764

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=96.85  E-value=1.2e-05  Score=68.81  Aligned_cols=117  Identities=9%  Similarity=-0.018  Sum_probs=79.7

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC--------ChhhHHHHHHHHHHHH
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN--------EPHIYAVADSAYQDMM  272 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~--------~ph~f~~~d~~~~~~~  272 (488)
                      .++..++...+.. .........+..++..+|+++.+.|.+.||+..+........        -..+|..+|.+.+|.|
T Consensus        27 ~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i  105 (153)
T 3ox6_A           27 YINCRDLGNCMRT-MGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEI  105 (153)
T ss_dssp             SCCHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSSSB
T ss_pred             cCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcC
Confidence            3444444444332 112222333445666778888899999999987743322211        1238999999999999


Q ss_pred             hcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         273 HHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       273 ~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +..+.+.++-.- .|.. ..+.++.+++.++.+++|.|+++||+..+.
T Consensus       106 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  152 (153)
T 3ox6_A          106 STSELREAMRAL-LGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS  152 (153)
T ss_dssp             CHHHHHHHHHHH-HSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred             cHHHHHHHHHHH-hcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            999998877320 2222 267899999999999999999999998775

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=96.85  E-value=3e-05  Score=68.97  Aligned_cols=95  Identities=7%  Similarity=-0.001  Sum_probs=72.6

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCC--CChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD--NEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLL  298 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~--~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~  298 (488)
                      ..+..++..+|.++++.|.+.||+..+.......  .-..+|..+|.+.+|.|+..+.+.++-    |.+- .+.++.++
T Consensus        73 ~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~----~~~~~~~~~~~~~  148 (180)
T 3mse_B           73 WDINRILQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH----DKVLDNNDIDNFF  148 (180)
T ss_dssp             HHHHHHHHHHCTTCCSEECHHHHHHHHSCCTTC--CHHHHHHHHHCTTCSSCBCHHHHHHHTT----TSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHHhcccCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHc----CCCCCHHHHHHHH
Confidence            4455667788899999999999998776543222  112499999999999999999988872    2223 67799999


Q ss_pred             HHHHHhcC--------CCchhhhHhhhcch
Q psy9090         299 KHLIFLGQ--------GAAKVGEKIEKCVN  320 (488)
Q Consensus       299 ~~~~~~~~--------g~~~~~e~i~~~~~  320 (488)
                      +.++.+++        |.|+++||+..+.+
T Consensus       149 ~~~d~~~d~~~~~~~~G~i~~~eF~~~l~~  178 (180)
T 3mse_B          149 LSVHSIKKGIPREHIINKISFQEFKDYMLS  178 (180)
T ss_dssp             HHHHTC---------CCCBCHHHHHHHHHT
T ss_pred             HHhhhccCcccccccCCeeeHHHHHHHHHh
Confidence            99999988        99999999988754

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=96.84  E-value=7.4e-06  Score=66.34  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=63.2

Q ss_pred             CCCCCCCchhhhhccCCCC-CCCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSR-SDNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~-~~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+..... ...-..+|..+|.+.+|.|+..+.+.++-. |..|... .+.++.+++.++.+++|.+++
T Consensus        20 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~   99 (109)
T 1rwy_A           20 AADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGV   99 (109)
T ss_dssp             STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEH
T ss_pred             CCCcEeHHHHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCH
Confidence            5677899999987743210 001123999999999999999998877732 2113222 677999999999999999999


Q ss_pred             hhHhhhcch
Q psy9090         312 GEKIEKCVN  320 (488)
Q Consensus       312 ~e~i~~~~~  320 (488)
                      +||+..+..
T Consensus       100 ~eF~~~~~~  108 (109)
T 1rwy_A          100 EEFSTLVAE  108 (109)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999987643

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=96.82  E-value=2.4e-05  Score=66.33  Aligned_cols=84  Identities=8%  Similarity=0.053  Sum_probs=65.2

Q ss_pred             CCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~  309 (488)
                      +.+.|.+.+|+..+........++    .+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.++.+++|.+
T Consensus        52 ~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~--~~g~~~~~~~~~~~~~~~D~d~dg~i  129 (143)
T 3j04_B           52 APGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLT--TMGDRFTDEEVDEMYREAPIDKKGNF  129 (143)
T ss_dssp             SSSCCCHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHH--TSSSCCCHHHHHHHHHHTTCCSSSCC
T ss_pred             CCCCcCHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHH--HcCCCCCHHHHHHHHHHcCCCCCCcC
Confidence            557789999998876543322222    289999999999999999998883  32322 26789999999999999999


Q ss_pred             hhhhHhhhcch
Q psy9090         310 KVGEKIEKCVN  320 (488)
Q Consensus       310 ~~~e~i~~~~~  320 (488)
                      +++||+..+..
T Consensus       130 ~~~eF~~~~~~  140 (143)
T 3j04_B          130 NYVEFTRILKH  140 (143)
T ss_dssp             CSTHHHHHHHS
T ss_pred             cHHHHHHHHhc
Confidence            99999988753

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=96.81  E-value=3.1e-05  Score=63.44  Aligned_cols=63  Identities=6%  Similarity=0.009  Sum_probs=50.9

Q ss_pred             hHHHHH-HHHHH-HHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVAD-SAYQD-MMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d-~~~~~-~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|.++| ++++| .|+..+++.++-+  |+ .|... .+.++.||+.+|.++||.|+|+||+.+|....
T Consensus        27 aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~~   95 (113)
T 2lnk_A           27 TFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA   95 (113)
T ss_dssp             HHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHH
Confidence            999999 88887 9999999988732  22 22222 56899999999999999999999999887654

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=96.80  E-value=8.1e-06  Score=66.16  Aligned_cols=85  Identities=16%  Similarity=0.128  Sum_probs=62.5

Q ss_pred             CCCCCCCchhhhhccCCCCC-CCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSRS-DNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~-~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+...... ..-..+|..+|.+.+|.|+..+.+.++-. |..|... .+.++.+++.++.+++|.+++
T Consensus        21 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~  100 (109)
T 1bu3_A           21 AADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGV  100 (109)
T ss_dssp             STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECH
T ss_pred             CCCcCcHHHHHHHHHcChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeH
Confidence            45778999999877432110 00123999999999999999998877732 2113222 678999999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+..+.
T Consensus       101 ~eF~~~~~  108 (109)
T 1bu3_A          101 DEWAALVK  108 (109)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998764

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.79  E-value=0.00067  Score=63.39  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=24.5

Q ss_pred             CeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          25 VIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        25 ivHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ++|+|++|.||+++.++.+.|+||+.+.
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhcc
Confidence            9999999999999876666799999764

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=96.79  E-value=2.3e-05  Score=70.97  Aligned_cols=94  Identities=9%  Similarity=0.007  Sum_probs=69.3

Q ss_pred             CCceeeeCCCCCCCCCCchhhhhccCCCC----------------CCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcc
Q psy9090         225 GDVLLFINPNTHLNLYGTKYHFKYKFKSR----------------SDNE----PHIYAVADSAYQDMMHHEEAQHIVLAG  284 (488)
Q Consensus       225 ~~il~~Inp~~~~~i~~~ef~~~~~~~~~----------------~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sg  284 (488)
                      ..++..+|.++++.|.+.||+..+.....                ....    ..+|..+|.+.+|.|+..+.+.++-  
T Consensus        64 ~~l~~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~--  141 (202)
T 2bec_A           64 DRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLR--  141 (202)
T ss_dssp             HHHHHTTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHH--
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH--
Confidence            34455678888899999999987754432                1111    1299999999999999999887772  


Q ss_pred             cc-cCC-chhhHHHHHHH----HHHhcCCCchhhhHhhhcch
Q psy9090         285 ET-LAG-KTTSLKHLLKH----LIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       285 es-gag-kte~~k~i~~~----~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .. |.. ..+.++.+++.    +|.+++|.|+++||+..+..
T Consensus       142 ~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  183 (202)
T 2bec_A          142 LMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK  183 (202)
T ss_dssp             HSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTT
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence            22 321 25667777777    99999999999999988764

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=96.78  E-value=0.0007  Score=63.69  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=24.9

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ..++|+|++|.||+++..+.+.|+||+.+.
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence            458999999999999875556799998764

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=96.77  E-value=4.2e-05  Score=65.03  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=64.6

Q ss_pred             CCCCCCCCCCchhhhhccCCC--CCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHh
Q psy9090         232 NPNTHLNLYGTKYHFKYKFKS--RSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFL  304 (488)
Q Consensus       232 np~~~~~i~~~ef~~~~~~~~--~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~  304 (488)
                      |.++ +.|.+.+|+..+....  .....    ..+|..+|.+.+|.|+..+.+.++-  ..|-. ..+.++.+++. +.+
T Consensus        57 d~~~-g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~~~~~-d~~  132 (149)
T 2mys_C           57 EMNA-AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLA--TLGEKMTEEEVEELMKG-QED  132 (149)
T ss_pred             cccC-CcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceEcHHHHHHHHH--HhCCCCCHHHHHHHHhh-CCC
Confidence            7777 8899999998775541  11111    1299999999999999999988773  22222 36779999999 999


Q ss_pred             cCCCchhhhHhhhcc
Q psy9090         305 GQGAAKVGEKIEKCV  319 (488)
Q Consensus       305 ~~g~~~~~e~i~~~~  319 (488)
                      ++|.++++||+..+.
T Consensus       133 ~dg~i~~~eF~~~~~  147 (149)
T 2mys_C          133 SNGCINYEAFVKHIM  147 (149)
T ss_pred             CCCcEeHHHHHHHHh
Confidence            999999999998875

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=96.76  E-value=2e-05  Score=70.15  Aligned_cols=94  Identities=10%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             ceeeeCCCCCCC-CCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc-cccc-CCc--hhhHH--
Q psy9090         227 VLLFINPNTHLN-LYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA-GETL-AGK--TTSLK--  295 (488)
Q Consensus       227 il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s-gesg-agk--te~~k--  295 (488)
                      ++..+|.++++. |.+.||+..+.........    ..+|..+|.+.+|.|+..+.+.++.. |... ..+  .+.++  
T Consensus        65 l~~~~D~d~~G~~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~  144 (183)
T 1dgu_A           65 ICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL  144 (183)
T ss_dssp             HHHHHSCSSSSCCCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCEecHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcccccCCCCHHHHHHH
Confidence            455568888999 9999999877543322211    12999999999999999998887732 2210 012  34444  


Q ss_pred             --HHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         296 --HLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       296 --~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                        .+++.++.+++|.++++||+..+..
T Consensus       145 ~~~~~~~~D~d~dG~I~~~EF~~~~~~  171 (183)
T 1dgu_A          145 IDNILEESDIDRDGTINLSEFQHVISR  171 (183)
T ss_dssp             HHHHHHHHCTTSSSEEEHHHHHHHHCS
T ss_pred             HHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence              3999999999999999999988764

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=96.74  E-value=8.4e-06  Score=77.16  Aligned_cols=127  Identities=10%  Similarity=0.148  Sum_probs=87.6

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQ  278 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q  278 (488)
                      ++..++...+...........++..++..+|.++++.|.+.||...+..........   .+|..+|.+.+|.|+..+..
T Consensus       109 I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~  188 (256)
T 2jul_A          109 VDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEML  188 (256)
T ss_dssp             EEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHH
T ss_pred             CCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            444444444444332333334566678889999999999999998765332211111   28999999999999988888


Q ss_pred             EEEEc-----ccc------cCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc---hhhhhhhcc
Q psy9090         279 HIVLA-----GET------LAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV---NVIHAIGNA  328 (488)
Q Consensus       279 ~i~~s-----ges------gagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~---~~leafgna  328 (488)
                      .++..     |..      ..-..+.++.+++.+|.++||.|+++||+..+.   .++++|+..
T Consensus       189 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~  252 (256)
T 2jul_A          189 AIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLF  252 (256)
T ss_dssp             HHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhh
Confidence            76632     210      001357789999999999999999999998876   378887754

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=96.72  E-value=6.6e-06  Score=69.97  Aligned_cols=95  Identities=11%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCC----CCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS----DNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKH  296 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~----~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~  296 (488)
                      ..+..++..+|.++.+.|.+.||+..+......    ..-..+|..+|.+.+|.|+..+.+.++  ...|..- .+.++.
T Consensus        47 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l--~~~~~~~~~~~~~~  124 (147)
T 4ds7_A           47 AEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVL--TSIGEKLTDAEVDE  124 (147)
T ss_dssp             HHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSSEECHHHHHHHH--HHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCCeECHHHHHHHH--HHcCCCCCHHHHHH
Confidence            334556667788888999999999877533111    111238999999999999998888877  3333222 677899


Q ss_pred             HHHHHHHhcCCCchhhhHhhhcc
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +++.++ +++|.++++||+..+.
T Consensus       125 ~~~~~d-~~dg~i~~~eF~~~l~  146 (147)
T 4ds7_A          125 MLREVS-DGSGEINIKQFAALLS  146 (147)
T ss_dssp             HHHHHS-SSCSSEEHHHHHHHTT
T ss_pred             HHHHhc-CCCCcCcHHHHHHHHh
Confidence            999999 9999999999998764

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=96.70  E-value=9.9e-06  Score=74.88  Aligned_cols=92  Identities=10%  Similarity=0.063  Sum_probs=70.4

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHL  301 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~  301 (488)
                      .+..++..+|.++++.|.+.||+..+...   ..-..+|..+|++++|.|+..+.+.++-  +.|.. ..+.++.+++.+
T Consensus        88 ~~~~l~~~~D~d~dg~I~~~EF~~~~~~~---~~l~~~F~~~D~d~~G~I~~~El~~~l~--~~g~~~~~~~~~~l~~~~  162 (220)
T 3sjs_A           88 TALRMMRIFDTDFNGHISFYEFMAMYKFM---ELAYNLFVMNARARSGTLEPHEILPALQ--QLGFYINQRTSLLLHRLF  162 (220)
T ss_dssp             HHHHHHHHHCTTCSSCBCHHHHHHHHHHH---HHHHHHHHHHCCSSTTEECHHHHHHHHH--HHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCcHHHHHHHHH--HhCCCCCHHHHHHHHHHh
Confidence            34455667788899999999999877542   1123499999999999999999988773  33322 367899999999


Q ss_pred             HHhcCCCchhhhHhhhcch
Q psy9090         302 IFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       302 ~~~~~g~~~~~e~i~~~~~  320 (488)
                      + ++||.++++||+..|..
T Consensus       163 d-d~dg~I~~~eF~~~~~~  180 (220)
T 3sjs_A          163 A-RGMAFCDLNCWIAICAF  180 (220)
T ss_dssp             C---CCSEEHHHHHHHHHH
T ss_pred             c-CCCCcCcHHHHHHHHHH
Confidence            9 99999999999988765

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=96.70  E-value=3.9e-05  Score=70.99  Aligned_cols=103  Identities=11%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc--ccccCCc-hhhHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA--GETLAGK-TTSLKH  296 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s--gesgagk-te~~k~  296 (488)
                      +..++..+|.++++.|.+.||+..+..........    .+|..+|.+.+|.|+..+.+.++..  .+.|..- .+.++.
T Consensus        87 ~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~  166 (226)
T 2zfd_A           87 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIED  166 (226)
T ss_dssp             HHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCcHHHHHHHHHHHccCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            34467788999999999999998775443222111    2999999999999999998877731  1222222 344544


Q ss_pred             HH----HHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         297 LL----KHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       297 i~----~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      ++    +.+|.++||.|+++||+..+..   ++++|+
T Consensus       167 ~~~~~f~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~  203 (226)
T 2zfd_A          167 IIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMT  203 (226)
T ss_dssp             HHHHHHHHHCSSCSSEECHHHHHHHHHHSGGGGGGGC
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHhChHHHHHhc
Confidence            44    5899999999999999987653   555554

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=96.69  E-value=1.4e-05  Score=69.01  Aligned_cols=95  Identities=14%  Similarity=0.032  Sum_probs=71.1

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCC-CCCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS-DNEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKH  296 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~-~~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~  296 (488)
                      .+..+ ..+|.++.+.|.+.||+..+...... ..+.    .+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.
T Consensus        48 ~~~~l-~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~  124 (156)
T 1wdc_C           48 DVFAV-GGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLT--ALGERLSDEDVDE  124 (156)
T ss_dssp             HHHHT-TCCSSTTSCEECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHH--HSSSCCCHHHHHH
T ss_pred             HHHHH-HhhCCCCCCeeeHHHHHHHHHHHhhccCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HcCCCCCHHHHHH
Confidence            34444 56788888999999999877544321 1111    289999999999999999888773  22322 3677999


Q ss_pred             HHHH--HHHhcCCCchhhhHhhhcch
Q psy9090         297 LLKH--LIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       297 i~~~--~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +++.  ++.+++|.++++||+..+..
T Consensus       125 ~~~~~~~D~d~dg~i~~~eF~~~~~~  150 (156)
T 1wdc_C          125 IIKLTDLQEDLEGNVKYEDFVKKVMA  150 (156)
T ss_dssp             HHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCCcEeHHHHHHHHhc
Confidence            9999  99999999999999987753

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A

Probab=96.69  E-value=3.8e-05  Score=62.22  Aligned_cols=62  Identities=16%  Similarity=0.064  Sum_probs=49.8

Q ss_pred             hHHHHH-HHHH-HHHhcCCCcEEEEcccccC-Cc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVAD-SAYQ-DMMHHEEAQHIVLAGETLA-GK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d-~~~~-~~~~~~~~q~i~~sgesga-gk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+| +++. |.|+..+++.++-+ +.|. .. .+.++.||+.+|.++||.|+|+||+.+|....
T Consensus        27 aF~~fD~~dg~~G~Is~~EL~~~l~~-~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~~   92 (106)
T 2h2k_A           27 TFFTFARQEGRKDSLSVNEFKELVTQ-QLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELA   92 (106)
T ss_dssp             HHHHHHTSSSSTTEECHHHHHHHHHH-HCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHcccCCCCCEECHHHHHHHHHH-HcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence            999999 7886 79999999988732 1221 12 26799999999999999999999999887654

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=96.69  E-value=6.8e-05  Score=65.30  Aligned_cols=83  Identities=7%  Similarity=-0.026  Sum_probs=63.2

Q ss_pred             CCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCch
Q psy9090         236 HLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAK  310 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~  310 (488)
                      ++.|.+.||+..+........+    ..+|..+|.+.+|.|+..+.+.++-  ..|-. ..+.++.+++.+|.+++|.|+
T Consensus        72 dg~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~~~~~D~d~dg~I~  149 (166)
T 2mys_B           72 SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLT--TGGGRFTPEEIKNMWAAFPPDVAGNVD  149 (166)
T ss_pred             CCCcCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCcceeHHHHHHHHH--HcCCCCCHHHHHHHHHhcCCCCCCeEe
Confidence            4668899998877543221111    2399999999999999999998873  22322 267799999999999999999


Q ss_pred             hhhHhhhcch
Q psy9090         311 VGEKIEKCVN  320 (488)
Q Consensus       311 ~~e~i~~~~~  320 (488)
                      ++||+.++..
T Consensus       150 ~~eF~~~~~~  159 (166)
T 2mys_B          150 YKNICYVITH  159 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=96.69  E-value=7.9e-06  Score=66.09  Aligned_cols=85  Identities=13%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCCCCCCchhhhhccCCCC-CCCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSR-SDNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~-~~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~  311 (488)
                      +++.|.+.||+..+..... ...-..+|..+|.+.+|.|+..+.+.++-. |..|... .+.++.+++.++.+++|.+++
T Consensus        20 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~   99 (108)
T 2kyc_A           20 APDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGA   99 (108)
T ss_dssp             STTTCCHHHHHHHHTCTTCCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTTTTHHHHTTTCCSSSSCCCS
T ss_pred             CCCcCCHHHHHHHHhhCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCCH
Confidence            5677999999988743211 111234999999999999999999988732 2213222 677899999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+..+.
T Consensus       100 ~eF~~~~~  107 (108)
T 2kyc_A          100 EEFQEMVQ  107 (108)
T ss_dssp             SHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998763

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=96.67  E-value=1.9e-05  Score=71.81  Aligned_cols=125  Identities=13%  Similarity=0.137  Sum_probs=84.4

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQ  278 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q  278 (488)
                      ++..++...+............+..++..+|.++++.|.+.||...+.........   ..+|..+|.+.+|.|+..+..
T Consensus        51 i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~  130 (207)
T 2d8n_A           51 ITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVL  130 (207)
T ss_dssp             EEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHSCSSSSTTHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeEcHHHHH
Confidence            44444444444332222233445667788899999999999999776533221111   239999999999999998888


Q ss_pred             EEEEc-----c----ccc----CCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         279 HIVLA-----G----ETL----AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       279 ~i~~s-----g----esg----agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      .++..     |    +.=    ....+.++.+++.+|.+++|.|+++||+..+..   +++.|.
T Consensus       131 ~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~  194 (207)
T 2d8n_A          131 EIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQ  194 (207)
T ss_dssp             HHHHHHHHHSCHHHHHTSCTTTSSHHHHHHHHHHHTTCCTTCCEEHHHHHHHHHHCHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCcccccccHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHhChHHHHHHh
Confidence            77643     3    100    012366999999999999999999999988763   566664

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=96.67  E-value=2.8e-05  Score=70.25  Aligned_cols=100  Identities=11%  Similarity=0.030  Sum_probs=74.2

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-c----cccCCc-hhh
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-G----ETLAGK-TTS  293 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-g----esgagk-te~  293 (488)
                      .+..++..+|.++++.|.+.||+..+.........   ..+|..+|.+.+|.|+..+.+.++-. |    ..|... .+.
T Consensus        74 ~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~  153 (204)
T 3e3r_A           74 EAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEV  153 (204)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHTSCCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHH
T ss_pred             HHHHHHHHhccCCCCcCcHHHHHHHHHhhcCchHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHH
Confidence            34455667788899999999999887654322111   13999999999999999998887732 1    122222 466


Q ss_pred             HHHHHHHHHH-hcCCCchhhhHhhhcchhh
Q psy9090         294 LKHLLKHLIF-LGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       294 ~k~i~~~~~~-~~~g~~~~~e~i~~~~~~l  322 (488)
                      ++.+++.+|. ++||.++++||+..+..+-
T Consensus       154 ~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~  183 (204)
T 3e3r_A          154 LRRFLDNFDSSEKDGQVTLAEFQDYYSGVS  183 (204)
T ss_dssp             HHHHHHHHSCSSCCSCEEHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCcCcHHHHHHHHHHcC
Confidence            9999999998 9999999999998876643

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=96.65  E-value=4.7e-05  Score=69.20  Aligned_cols=91  Identities=9%  Similarity=-0.000  Sum_probs=70.3

Q ss_pred             eeeCCCCCCCCCCchhhhhcc---------CCCCCCC-----ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhH
Q psy9090         229 LFINPNTHLNLYGTKYHFKYK---------FKSRSDN-----EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSL  294 (488)
Q Consensus       229 ~~Inp~~~~~i~~~ef~~~~~---------~~~~~~~-----~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~  294 (488)
                      ..+|.++++.|.+.||+..+.         .......     -..+|..+|.+.+|.|+..+.+.++  ...| -..+.+
T Consensus        88 ~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l--~~~g-~~~~~~  164 (208)
T 2hpk_A           88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMM--KAFD-VPQEAA  164 (208)
T ss_dssp             HHTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSSBCHHHHHHHH--HHTT-SCTTHH
T ss_pred             HHhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHH--HHhC-cCHHHH
Confidence            567888889999999998764         1111111     1238999999999999999998877  3334 346779


Q ss_pred             HHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         295 KHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       295 k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +.+++.+|.++||.|+++||+..+...+
T Consensus       165 ~~~~~~~D~d~dG~I~~~EF~~~~~~~~  192 (208)
T 2hpk_A          165 YTFFEKADTDKSGKLERTELVHLFRKFW  192 (208)
T ss_dssp             HHHHHHHCTTCCSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence            9999999999999999999999887653

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=96.64  E-value=2.8e-05  Score=71.50  Aligned_cols=94  Identities=10%  Similarity=0.076  Sum_probs=67.4

Q ss_pred             ceeeeCCCCCCC-CCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc-ccc-cCCc--hhhHH--
Q psy9090         227 VLLFINPNTHLN-LYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA-GET-LAGK--TTSLK--  295 (488)
Q Consensus       227 il~~Inp~~~~~-i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s-ges-gagk--te~~k--  295 (488)
                      ++..+|.++++. |.+.||+..+..........    .+|.++|.+.+|.|+..+.+.++.. |+. +..+  .+.++  
T Consensus        96 lf~~~D~d~dG~~I~f~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~s~~e~~~~  175 (214)
T 2l4h_A           96 ICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL  175 (214)
T ss_dssp             HHHHHCCSSSCCSEEHHHHHHHHHHTSSCSCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHSSSCTTCSCTHHHHH
T ss_pred             HHHHhCcCCCCCEecHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            344557788898 99999998775443222212    2999999999999999999887743 321 0011  23344  


Q ss_pred             --HHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         296 --HLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       296 --~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                        .+++.+|.++||.|+++||+..+..
T Consensus       176 ~~~~~~~~D~d~dG~Is~~EF~~~~~~  202 (214)
T 2l4h_A          176 IDNILEESDIDRDGTINLSEFQHVISR  202 (214)
T ss_dssp             HHHHHHHHCCSCCSSBCSHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence              5999999999999999999987753

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=96.63  E-value=4.2e-05  Score=67.33  Aligned_cols=124  Identities=10%  Similarity=0.049  Sum_probs=85.3

Q ss_pred             hhhccchhhHHHHHHhhhc-------cCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHH
Q psy9090         198 ALETISEDNIVQELEERHN-------SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQD  270 (488)
Q Consensus       198 ~l~~l~e~~l~~~L~~r~~-------~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~  270 (488)
                      .-..++..++...+...+.       .......+..++..+|.++++.|.+.||...+...   ..-..+|..+|.+.+|
T Consensus        16 ~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~---~~~~~~F~~~D~d~~G   92 (173)
T 1alv_A           16 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI---KKWQAIYKQFDVDRSG   92 (173)
T ss_dssp             GGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHHHHCTTCCS
T ss_pred             CCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH---HHHHHHHHHHCCCCCC
Confidence            3344555555555544321       12223345566778899999999999999777532   1112399999999999


Q ss_pred             HHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         271 MMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       271 ~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                      .|+..+.+.++-  ..|-. ..+.++.+++.++ +++|.++++||+..+..   +.++|-.
T Consensus        93 ~i~~~el~~~l~--~~g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~~~~~~~~F~~  150 (173)
T 1alv_A           93 TIGSSELPGAFE--AAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVRLDAMFRAFKS  150 (173)
T ss_dssp             SBCTTTHHHHHH--HHTCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH--HcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999988773  22322 2577899999998 99999999999988754   4455543

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A

Probab=96.62  E-value=3.7e-05  Score=61.59  Aligned_cols=66  Identities=11%  Similarity=0.076  Sum_probs=52.0

Q ss_pred             hHHHHHHHH---HHHHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhh
Q psy9090         260 IYAVADSAY---QDMMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI  325 (488)
Q Consensus       260 ~f~~~d~~~---~~~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leaf  325 (488)
                      +|..+|++.   +|.|+..+++.++-+  |+ .+... .+.++.||+.+|.++||.|+|+||+.+|..+.-+.
T Consensus        16 ~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~~~~   88 (100)
T 3nxa_A           16 NFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGITGPI   88 (100)
T ss_dssp             HHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHHGGG
T ss_pred             HHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence            899998863   699999999988732  21 11112 46799999999999999999999999998876654

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=96.62  E-value=9.9e-05  Score=58.00  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHH---HHhcCCCcEEEEc--cc-ccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         259 HIYAVADSAYQD---MMHHEEAQHIVLA--GE-TLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       259 h~f~~~d~~~~~---~~~~~~~q~i~~s--ge-sgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      .+|..+| +..|   .|+..+++.++-+  +. -|... .+.++.|++.+|.++||.|+|+||+.++..+.-+
T Consensus        13 ~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l~~~   84 (92)
T 3rm1_A           13 DVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMITTA   84 (92)
T ss_dssp             HHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Confidence            3888888 5555   8999998887733  10 23222 6789999999999999999999999998877654

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=96.62  E-value=1.1e-05  Score=71.38  Aligned_cols=97  Identities=9%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCC----CCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS----DNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHL  297 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~----~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i  297 (488)
                      .+..++..+|.++++.|.+.||+..+......    ..-..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+
T Consensus        48 ~~~~l~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~--~~g~~~~~~~~~~~  125 (179)
T 2f2o_A           48 ELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT--NLGEKLTDEEVDEM  125 (179)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH--HC--CCCHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCcHHHHHHHHHHHccCcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HhCCCCCHHHHHHH
Confidence            34456677888999999999999776432110    1112389999999999999988887762  22222 26779999


Q ss_pred             HHHHHHhcCCCchhhhHhhhcchh
Q psy9090         298 LKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       298 ~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      ++.+|.+++|.++++||+..+...
T Consensus       126 ~~~~D~~~dg~i~~~eF~~~~~~~  149 (179)
T 2f2o_A          126 IREADIDGDGQVNYEEFVQMMTAK  149 (179)
T ss_dssp             HHHHCTTCSSSEEHHHHHHHSCC-
T ss_pred             HHHcCCCCCCcCcHHHHHHHHHHc
Confidence            999999999999999999988654

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=96.61  E-value=4.2e-05  Score=77.87  Aligned_cols=115  Identities=9%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCC
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEA  277 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~  277 (488)
                      ++..++...+.. .........+..++..+|.++++.|.+.||+..+..........    .+|+.+|.+.+|.|+..+.
T Consensus       329 Is~~EL~~~L~~-lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~Is~eEL  407 (450)
T 3sg6_A          329 ITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL  407 (450)
T ss_dssp             ECHHHHHHHHHH-TTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHHC------CHHHHHHHHHHHCTTCSSEECHHHH
T ss_pred             CcHHHHHHHHHH-hCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCeEeHHHH
Confidence            444444444433 22223334456677788999999999999998876543222222    3999999999999999999


Q ss_pred             cEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         278 QHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       278 q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +.++-  ..|.. ..+.++.+++.+|.++||.|+++||+..+.
T Consensus       408 r~~L~--~lG~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~  448 (450)
T 3sg6_A          408 RHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  448 (450)
T ss_dssp             HHHHH--HHTCCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred             HHHHH--HhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            88773  32322 367899999999999999999999998875

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=96.59  E-value=5.5e-05  Score=60.47  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|++++|.|+..+.+.++  ..+|. ..+.++.|++.+|.+++|.++++||+.+|..+
T Consensus        15 ~~F~~~D~d~dG~Is~~el~~~l--~~~~l-~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~   74 (99)
T 1qjt_A           15 KYYRQVEAGNTGRVLALDAAAFL--KKSGL-PDLILGKIWDLADTDGKGVLSKQEFFVALRLV   74 (99)
T ss_dssp             HHHHHHCCTTSSCCCSHHHHHHH--HTSSS-CHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCCHHHHHHHH--HHcCC-CHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence            49999999999999999998887  33442 36789999999999999999999999988654

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=96.59  E-value=1.6e-05  Score=69.30  Aligned_cols=95  Identities=9%  Similarity=0.047  Sum_probs=67.1

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLK  299 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~  299 (488)
                      .+..++..+|.++.+.|.+.||+..+.........   ..+|..+|.+.+|.|+..+.+.++-  ..|. ..+.++.+++
T Consensus        64 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~--~~~~-~~~~~~~~~~  140 (166)
T 2aao_A           64 EILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACE--EFGV-EDVRIEELMR  140 (166)
T ss_dssp             HHHHHHHHHCTTCCSSBCHHHHHHHHTTCHHHHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTC--C---------CCHHH
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HcCC-CHHHHHHHHH
Confidence            34455667788888999999999877543221112   2399999999999999888887762  2221 2566889999


Q ss_pred             HHHHhcCCCchhhhHhhhcch
Q psy9090         300 HLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .++.+++|.++++||+..+..
T Consensus       141 ~~d~~~dg~i~~~eF~~~~~~  161 (166)
T 2aao_A          141 DVDQDNDGRIDYNEFVAMMQK  161 (166)
T ss_dssp             HHCTTCSSSBCHHHHHHHHC-
T ss_pred             HhCCCCCCcEeHHHHHHHHHh
Confidence            999999999999999988754

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=96.58  E-value=0.00012  Score=56.27  Aligned_cols=82  Identities=11%  Similarity=0.132  Sum_probs=58.1

Q ss_pred             CCCCCCCchhhhhcc-CCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhh
Q psy9090         235 THLNLYGTKYHFKYK-FKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVG  312 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~-~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~  312 (488)
                      +++.|++.|++.... .......-..+|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++
T Consensus         2 ~~G~i~~~e~~~~~~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l--~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~   79 (87)
T 1s6j_A            2 SSGHIDDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGL--KRVGSELMESEIKDLMDAADIDKSGTIDYG   79 (87)
T ss_dssp             CSSSSSSHHHHSSSSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHH--HTTTSSCCHHHHHHHHHHHCTTCSSEECHH
T ss_pred             CCCccCccHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence            456677777432211 11111222359999999999999998888777  3333322 6779999999999999999999


Q ss_pred             hHhhhc
Q psy9090         313 EKIEKC  318 (488)
Q Consensus       313 e~i~~~  318 (488)
                      ||+..+
T Consensus        80 eF~~~~   85 (87)
T 1s6j_A           80 EFIAAT   85 (87)
T ss_dssp             HHTTCC
T ss_pred             HHHHHH
Confidence            998765

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=96.56  E-value=4.1e-05  Score=69.50  Aligned_cols=104  Identities=10%  Similarity=0.021  Sum_probs=73.4

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc--ccccCCc-hhhHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA--GETLAGK-TTSLKH  296 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s--gesgagk-te~~k~  296 (488)
                      +..++..+|.++++.|.+.||+..+.........    ..+|..+|.+.+|.|+..+.+.++.+  .+.|..- .+.++.
T Consensus        76 ~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~  155 (207)
T 2ehb_A           76 ADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEV  155 (207)
T ss_dssp             HHHHHHHHCTTCSSEECHHHHHHHHGGGSTTSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEeHHHHHHHHHHHccCCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHH
Confidence            3446778899999999999999877654322111    12899999999999999998877631  1223222 344444


Q ss_pred             ----HHHHHHHhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         297 ----LLKHLIFLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       297 ----i~~~~~~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                          +++.+|.+++|.|+++||+..+..   ++++|+-
T Consensus       156 ~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~  193 (207)
T 2ehb_A          156 MVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIKNMTL  193 (207)
T ss_dssp             HHHHHHHHHCTTCSSEECHHHHHHHHHHCGGGGGGGCC
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHhChHHHHHhcc
Confidence                446999999999999999987663   5666643

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=96.50  E-value=1.3e-05  Score=71.61  Aligned_cols=126  Identities=13%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCC
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEA  277 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~  277 (488)
                      .++..++...+............+..++..+|.++++.|.+.||...+.........   ..+|+.+|.+.+|.|+..+.
T Consensus        42 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~  121 (190)
T 1g8i_A           42 QLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEM  121 (190)
T ss_dssp             EEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHH
T ss_pred             cCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeEeHHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCeECHHHH
Confidence            344444444444332222233446667788899999999999999776433211111   12899999999999888888


Q ss_pred             cEEEEc-----ccc-----cC-CchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         278 QHIVLA-----GET-----LA-GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       278 q~i~~s-----ges-----ga-gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      ..++..     |+.     |. ...+.++.+++.+|.+++|.|+++||+..+..   +++.|+
T Consensus       122 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~ef~~~~~~~~~~~~~~~  184 (190)
T 1g8i_A          122 LDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALS  184 (190)
T ss_dssp             HHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHCHHHHHHHC
T ss_pred             HHHHHHHHHHhCCccCCccccccHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHhChHHHHHHh
Confidence            776633     321     11 12567999999999999999999999987653   555554

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=96.50  E-value=5.6e-05  Score=68.82  Aligned_cols=91  Identities=9%  Similarity=0.040  Sum_probs=66.4

Q ss_pred             eeeeCCCCCCCCCCchhhhhccCCCCCCC---------------C----hhhHHHHHHHHHHHHhcCCCcEEEEc--ccc
Q psy9090         228 LLFINPNTHLNLYGTKYHFKYKFKSRSDN---------------E----PHIYAVADSAYQDMMHHEEAQHIVLA--GET  286 (488)
Q Consensus       228 l~~Inp~~~~~i~~~ef~~~~~~~~~~~~---------------~----ph~f~~~d~~~~~~~~~~~~q~i~~s--ges  286 (488)
                      +..+|.++++.|.+.||+..+........               .    ..+|..+|.+.+|.|+..+.+.++-.  |+.
T Consensus        67 ~~~~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~  146 (208)
T 2ct9_A           67 INAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN  146 (208)
T ss_dssp             HHTTSCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTT
T ss_pred             HHHHcCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCC
Confidence            33457777888999999987754322111               1    12899999999999999999887732  431


Q ss_pred             cCCchhhHHHH----HHHHHHhcCCCchhhhHhhhcch
Q psy9090         287 LAGKTTSLKHL----LKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       287 gagkte~~k~i----~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                        -..+.++.+    ++.+|.++||.|+++||+..+..
T Consensus       147 --~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~  182 (208)
T 2ct9_A          147 --ISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK  182 (208)
T ss_dssp             --CCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTT
T ss_pred             --CCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence              124556666    99999999999999999988754

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=96.47  E-value=6.7e-05  Score=59.41  Aligned_cols=60  Identities=15%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|++.+|.|+..+.+.++  ...|. ..+.++.|++.+|.+++|.++++||+.+|..+
T Consensus        14 ~~F~~~D~d~dG~I~~~el~~~l--~~~g~-~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~   73 (95)
T 1c07_A           14 EIFLKTDKDMDGFVSGLEVREIF--LKTGL-PSTLLAHIWSLCDTKDCGKLSKDQFALAFHLI   73 (95)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHH--HTTTC-CHHHHHHHHHHHCTTCSSSEETTTHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEeHHHHHHHH--HHcCC-CHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence            39999999999999999988877  33332 35678999999999999999999999987543

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=96.46  E-value=3e-05  Score=66.51  Aligned_cols=95  Identities=7%  Similarity=-0.034  Sum_probs=42.1

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCC---CCCCh-----hhHHHHHHHHHHHHhcCCCcEEEEc-cc-----ccC-
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSR---SDNEP-----HIYAVADSAYQDMMHHEEAQHIVLA-GE-----TLA-  288 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~---~~~~p-----h~f~~~d~~~~~~~~~~~~q~i~~s-ge-----sga-  288 (488)
                      ...++..+|.++++.|.+.||...+.....   ....+     .+|+.+|.+.+|.|+..+.+.++.+ +.     .|. 
T Consensus        29 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~  108 (143)
T 3a4u_B           29 SFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPL  108 (143)
T ss_dssp             ----------------------------------CCCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------
T ss_pred             CHHHHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCC
Confidence            345677889999999999999877654321   11122     2799999999999998887766632 11     011 


Q ss_pred             CchhhHHHHH----HHHHHhcCCCchhhhHhhhc
Q psy9090         289 GKTTSLKHLL----KHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       289 gkte~~k~i~----~~~~~~~~g~~~~~e~i~~~  318 (488)
                      -..+.+..++    +.+|.++||.|+++||+.++
T Consensus       109 ~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~  142 (143)
T 3a4u_B          109 MSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL  142 (143)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence            1144555555    88999999999999999765

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=96.44  E-value=5.2e-05  Score=61.90  Aligned_cols=60  Identities=8%  Similarity=0.010  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|++.+|.|+..+.+.++  ...|. ..+.++.|++.+|.+++|.++++||+.+|..+-
T Consensus        27 ~F~~~D~d~dG~Is~~el~~~l--~~~gl-~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~~   86 (110)
T 1iq3_A           27 QFRSLQPDPSSFISGSVAKNFF--TKSKL-SIPELSYIWELSDADCDGALTLPEFCAAFHLIV   86 (110)
T ss_dssp             HHHHHCCSSSSEEEHHHHHHHC--CSSSC-SSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCeEcHHHHHHHH--HHcCC-CHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence            9999999999999999999888  33332 256799999999999999999999999886543

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}

Probab=96.43  E-value=0.00011  Score=58.66  Aligned_cols=64  Identities=8%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             hhHHHHH-HHHHH-HHhcCCCcEEEEc--cc-ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVAD-SAYQD-MMHHEEAQHIVLA--GE-TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d-~~~~~-~~~~~~~q~i~~s--ge-sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+| ++++| .|+..+++.++-+  |+ -|.. ..+.++.||+.+|.++||.|+|+||+.++..+.
T Consensus        14 ~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~   83 (99)
T 2y5i_A           14 TVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAALT   83 (99)
T ss_dssp             HHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence            3899998 88887 9999999988732  22 1211 256799999999999999999999998887654

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=96.38  E-value=4.9e-05  Score=67.90  Aligned_cols=91  Identities=7%  Similarity=0.001  Sum_probs=70.1

Q ss_pred             eeeCCCCCCCCCCchhhhhccCCCC-----CCCC-------hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHH
Q psy9090         229 LFINPNTHLNLYGTKYHFKYKFKSR-----SDNE-------PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKH  296 (488)
Q Consensus       229 ~~Inp~~~~~i~~~ef~~~~~~~~~-----~~~~-------ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~  296 (488)
                      ..+|.++++.|.+.||+..+.....     ...+       ..+|..+|.+.+|.|+..+.+.++  ...| -..+.++.
T Consensus        71 ~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l--~~~g-~~~~~~~~  147 (191)
T 2ccm_A           71 KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVY--MSYG-IPKSDCDA  147 (191)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHH--HTTT-CCHHHHHH
T ss_pred             HhcCCCCCCeECHHHHHHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH--HHhC-CCHHHHHH
Confidence            6788899999999999877643210     0111       128999999999999999988776  2223 24677999


Q ss_pred             HHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +++.+|.++||.|+++||+..+....
T Consensus       148 ~~~~~D~d~dG~i~~~Ef~~~~~~~~  173 (191)
T 2ccm_A          148 AFDTLSDGGKTMVTREIFARLWTEYF  173 (191)
T ss_dssp             HHHHHTTTTTSCCBHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCcCHHHHHHHHHHHh
Confidence            99999999999999999999886554

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=96.35  E-value=5e-05  Score=67.98  Aligned_cols=92  Identities=8%  Similarity=-0.005  Sum_probs=65.1

Q ss_pred             ceeeeCCCCCCCCCCchhhhhccCCCC--------CC--CCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-ch
Q psy9090         227 VLLFINPNTHLNLYGTKYHFKYKFKSR--------SD--NEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KT  291 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~~~~~~~--------~~--~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kt  291 (488)
                      ++..+|.++++.|.+.||+..+.....        ..  .-.    .+|..+|.+++|.|+..+.+.++-  ..|.. ..
T Consensus        71 l~~~~D~d~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~--~~g~~~~~  148 (195)
T 1qv0_A           71 FFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK--ISGISPSQ  148 (195)
T ss_dssp             HHHHTTCCTTCCBCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHH--HHSSCCCH
T ss_pred             HHHHcCCCCCceEcHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH--HhCCCCCH
Confidence            344567788889999999976532210        01  011    689999999999999999988773  22322 26


Q ss_pred             hhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         292 TSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       292 e~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +.++.+++.+|.+++|.++++||+..+..
T Consensus       149 ~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  177 (195)
T 1qv0_A          149 EDCEATFRHCDLDNAGDLDVDEMTRQHLG  177 (195)
T ss_dssp             HHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            77999999999999999999999988754

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A

Probab=96.34  E-value=7.8e-05  Score=59.03  Aligned_cols=64  Identities=16%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             hhHHHHH-HHH-HHHHhcCCCcEEEEc--cc-ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVAD-SAY-QDMMHHEEAQHIVLA--GE-TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d-~~~-~~~~~~~~~q~i~~s--ge-sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+| +++ .|.|+..+++.++-+  |+ .|.. ..+.++.||+.+|.++||.|+|+||+.++..+.
T Consensus        13 ~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~   82 (95)
T 1j55_A           13 DVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAIT   82 (95)
T ss_dssp             HHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHH
Confidence            3899999 688 579999999888732  11 1211 246799999999999999999999998887654

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=96.33  E-value=1.9e-05  Score=68.52  Aligned_cols=92  Identities=9%  Similarity=-0.018  Sum_probs=70.1

Q ss_pred             eeeeCCCCCCCCCCchhhhhccCCCCCCC----------ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHH
Q psy9090         228 LLFINPNTHLNLYGTKYHFKYKFKSRSDN----------EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHL  297 (488)
Q Consensus       228 l~~Inp~~~~~i~~~ef~~~~~~~~~~~~----------~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i  297 (488)
                      +..+|+++++.|.+.||+..+........          -..+|+.+|.+.+|.|+..+.+.++  ...| -..+.++.+
T Consensus        61 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l--~~~~-~~~~~~~~~  137 (166)
T 3akb_A           61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARAL--TAFG-VPEDLARQA  137 (166)
T ss_dssp             HHHHCTTSSSCEEHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHH--HHTT-CCHHHHHHH
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHH--HHhC-CCHHHHHHH
Confidence            45678888899999999876643321110          1238999999999999999888777  3334 346789999


Q ss_pred             HHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         298 LKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       298 ~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      ++.+|.+++|.++++||+..+...+
T Consensus       138 ~~~~D~d~dg~i~~~ef~~~~~~~~  162 (166)
T 3akb_A          138 AAALDTDGDGKVGETEIVPAFARYF  162 (166)
T ss_dssp             HHHHCTTCSSBCCHHHHHHHHHHHT
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHh
Confidence            9999999999999999998876543

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=96.31  E-value=1.1e-05  Score=69.14  Aligned_cols=94  Identities=10%  Similarity=-0.001  Sum_probs=69.4

Q ss_pred             ccCCceeeeCCC--CCCCCCCchhhhhccCCCC------CCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhh
Q psy9090         223 FVGDVLLFINPN--THLNLYGTKYHFKYKFKSR------SDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTS  293 (488)
Q Consensus       223 ~v~~il~~Inp~--~~~~i~~~ef~~~~~~~~~------~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~  293 (488)
                      .+..++..+|.+  +++.|.+.||+..+.....      ...-..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.
T Consensus        47 ~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~  124 (151)
T 1w7j_B           47 EVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLT--TLGEKMTEEE  124 (151)
T ss_dssp             HHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHHHHHH--HSSSCCCHHH
T ss_pred             HHHHHHHHhCcCcCCCCcCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HcCCCCCHHH
Confidence            344455566777  7888999999987754321      11223399999999999999999888772  22322 2677


Q ss_pred             HHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         294 LKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       294 ~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++.+++.++ +++|.++++||+..+.
T Consensus       125 ~~~~~~~~d-~~dg~i~~~eF~~~~~  149 (151)
T 1w7j_B          125 VETVLAGHE-DSNGCINYEAFLKHIL  149 (151)
T ss_dssp             HHHHHTTCC-CTTSEEEHHHHHHHTC
T ss_pred             HHHHHHhcc-CCCCeEeHHHHHHHHh
Confidence            999999999 9999999999998775

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=96.31  E-value=1.8e-05  Score=72.43  Aligned_cols=103  Identities=9%  Similarity=0.078  Sum_probs=74.8

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-cccc--CC--chhhHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-GETL--AG--KTTSLK  295 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-gesg--ag--kte~~k  295 (488)
                      +..++..+|.++++.|.+.||...+.........   ..+|+.+|.+.+|.|+..+.+.++.. |..+  ..  ..+.++
T Consensus        59 ~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~  138 (211)
T 2ggz_A           59 IDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFIN  138 (211)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHH
T ss_pred             HHHHHHHHcCCCCCeEeHHHHHHHHHHhccCchHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHH
Confidence            4455667788899999999999877533221111   12899999999999999998877732 2111  11  135589


Q ss_pred             HHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         296 HLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       296 ~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      .+++.+|.+++|.|+++||+..+..   +.+.|.
T Consensus       139 ~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~  172 (211)
T 2ggz_A          139 LVFHKIDINNDGELTLEEFINGMAKDQDLLEIVY  172 (211)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHHTTTTTHHHHH
T ss_pred             HHHHHhCCCCCCCCcHHHHHHHHHhCHHHHHHHh
Confidence            9999999999999999999988764   556665

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=96.26  E-value=7.7e-05  Score=56.23  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|.-..+.++.+++.++.+++|.++++||+..+..
T Consensus         7 ~~F~~~D~~~~G~i~~~el~~~l~--~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~   66 (78)
T 1k9u_A            7 RIFKRFDTNGDGKISLSELTDALR--TLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNA   66 (78)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHHH--HHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHHH--HhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            489999999999888888887763  223113677999999999999999999999987654

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=96.25  E-value=3.7e-05  Score=69.66  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCcEEEEc-----ccc-------
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQHIVLA-----GET-------  286 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q~i~~s-----ges-------  286 (488)
                      ..+..++..+|.++++.|.+.||...+..........   .+|..+|.+.+|.|+..+...++..     |..       
T Consensus        59 ~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~  138 (204)
T 1jba_A           59 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAE  138 (204)
T ss_dssp             HHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSS
T ss_pred             HHHHHHHHHHcCCCCCeEeHHHHHHHHHHHccCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCcccccc
Confidence            3455667788999999999999998775433222222   2899999999999988888776632     211       


Q ss_pred             --cC--CchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         287 --LA--GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       287 --ga--gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                        |.  ...+.++.+++.+|.+++|.|+++||+..+..
T Consensus       139 ~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~  176 (204)
T 1jba_A          139 QQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR  176 (204)
T ss_dssp             TTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTT
T ss_pred             ccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHc
Confidence              00  12467999999999999999999999988763

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=96.23  E-value=9.3e-05  Score=64.78  Aligned_cols=90  Identities=11%  Similarity=0.044  Sum_probs=67.7

Q ss_pred             eeeeCCCCCCCCCCchhhhhccCCCCCC--------CChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHH
Q psy9090         228 LLFINPNTHLNLYGTKYHFKYKFKSRSD--------NEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLK  299 (488)
Q Consensus       228 l~~Inp~~~~~i~~~ef~~~~~~~~~~~--------~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~  299 (488)
                      +..+|  +++.|.+.||+..+.......        .-..+|+.+|.+.+|.|+..+.+.++  ...| -..+.++.+++
T Consensus        61 ~~~~D--~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l--~~~g-~~~~~~~~~~~  135 (174)
T 1q80_A           61 LTAVA--GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF--GMLG-LDKTMAPASFD  135 (174)
T ss_dssp             GGGTT--TTSCEEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHH--HHHT-CCGGGHHHHHH
T ss_pred             HHhcC--CCCeEcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HHcC-CCHHHHHHHHH
Confidence            33445  667889999987765432211        11229999999999999999988877  2223 13677999999


Q ss_pred             HHHHhcCCCchhhhHhhhcchhh
Q psy9090         300 HLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|.+++|.|+++||+..+...+
T Consensus       136 ~~D~d~dg~i~~~ef~~~~~~~~  158 (174)
T 1q80_A          136 AIDTNNDGLLSLEEFVIAGSDFF  158 (174)
T ss_dssp             HHCTTCSSSBCHHHHHHHHHHHH
T ss_pred             HhCCCCCceEeHHHHHHHHHHHh
Confidence            99999999999999999987665

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=96.23  E-value=0.00011  Score=56.59  Aligned_cols=59  Identities=10%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|.-..+.++.+++.+|.+++|.++++||+..+..
T Consensus        16 ~F~~~D~d~~G~i~~~el~~~l--~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~   74 (86)
T 2opo_A           16 IFKRFDTNGDGKISSSELGDAL--KTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARA   74 (86)
T ss_dssp             HHHHHCTTCSSEEEHHHHHHHH--HTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCcCHHHHHHHH--HHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            8999999999999988888777  3333113677999999999999999999999987653

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=96.21  E-value=1.8e-05  Score=70.65  Aligned_cols=85  Identities=11%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             CCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC--------chhhHHHHHHHHHH
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG--------KTTSLKHLLKHLIF  303 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag--------kte~~k~i~~~~~~  303 (488)
                      ..+.|.+.+|...+.........   ..+|.++|.+++|.|+..+.+.++-. .-|..        ..+.++.|++.+|.
T Consensus        75 ~~~~i~~~ef~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~D~  153 (179)
T 3a8r_A           75 VKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIAL-SASANKLSKIKERADEYTALIMEELDP  153 (179)
T ss_dssp             CSSEECHHHHHHHHHHHHCCCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CCCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH-HhccccccccccchHHHHHHHHHHhCC
Confidence            34557777777654321111111   13999999999999999999988730 11222        34678999999999


Q ss_pred             hcCCCchhhhHhhhcch
Q psy9090         304 LGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       304 ~~~g~~~~~e~i~~~~~  320 (488)
                      ++||.|+++||+.++..
T Consensus       154 d~dG~I~~~EF~~~~~~  170 (179)
T 3a8r_A          154 TNLGYIEMEDLEALLLQ  170 (179)
T ss_dssp             TCCSEECHHHHHHHHC-
T ss_pred             CCCCcCcHHHHHHHHHh
Confidence            99999999999988764

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=96.16  E-value=0.0001  Score=64.23  Aligned_cols=98  Identities=8%  Similarity=0.077  Sum_probs=74.0

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKH  300 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~  300 (488)
                      ..+..++..+|+++++.|.+.||+..+...   ..-..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.
T Consensus        40 ~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~---~~~~~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~~~~~  114 (165)
T 1k94_A           40 ETCRIMIAMLDRDHTGKMGFNAFKELWAAL---NAWKENFMTVDQDGSGTVEHHELRQAIG--LMGYRLSPQTLTTIVKR  114 (165)
T ss_dssp             HHHHHHHHHHCTTCSSCBCHHHHHHHHHHH---HHHHHHHHHHCTTCCSBCCHHHHHHHHH--HTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHHHH---HHHHHHHHHhCCCCCceECHHHHHHHHH--HhCCCCCHHHHHHHHHH
Confidence            345566777899999999999999876542   1123499999999999999999887773  22322 35778899998


Q ss_pred             HHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         301 LIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       301 ~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      +  +++|.++++||+..+..   +.++|-
T Consensus       115 ~--d~dg~i~~~eF~~~~~~~~~~~~~F~  141 (165)
T 1k94_A          115 Y--SKNGRIFFDDYVACCVKLRALTDFFR  141 (165)
T ss_dssp             H--CBTTBCBHHHHHHHHHHHHHHHHHHH
T ss_pred             h--CCCCeEcHHHHHHHHHHHHHHHHHHH
Confidence            8  89999999999988764   455564

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=96.14  E-value=8.9e-05  Score=53.81  Aligned_cols=61  Identities=8%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.+++.++.+++|.++++||+..+...
T Consensus         5 ~~F~~~D~d~~G~i~~~el~~~l--~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~   66 (67)
T 1tiz_A            5 RVFEKFDKNKDGKLSLDEFREVA--LAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM   66 (67)
T ss_dssp             HHHHHHCTTSSSCEEHHHHHHHH--HHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            47888898888888888887766  222322 26778999999999999999999999887654

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A

Probab=96.10  E-value=6.3e-05  Score=59.59  Aligned_cols=66  Identities=9%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             hhHHHHH-HHHHH-HHhcCCCcEEEEc--cc-ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         259 HIYAVAD-SAYQD-MMHHEEAQHIVLA--GE-TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       259 h~f~~~d-~~~~~-~~~~~~~q~i~~s--ge-sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      .+|..+| ++++| .|+..+++.++-+  |+ -|.. ..+.++.||+.+|.+++|.|+|+||+.++..+..+
T Consensus        16 ~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~   87 (95)
T 2wcb_A           16 NIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKA   87 (95)
T ss_dssp             HHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHH
Confidence            3899999 78887 9999999988732  11 1211 25679999999999999999999999988765443

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=96.09  E-value=2.2e-05  Score=67.99  Aligned_cols=95  Identities=9%  Similarity=0.094  Sum_probs=70.4

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCC-------CCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRS-------DNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLK  295 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~-------~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k  295 (488)
                      +..++..+|.++.+.|.+.||+..+......       ..-..+|..+|.+.+|.|+..+.+.++  ...|..- .+.++
T Consensus        58 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l--~~~g~~~~~~~~~  135 (162)
T 1top_A           58 LDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEIL--RATGEHVTEEDIE  135 (162)
T ss_dssp             HHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHH--HTTTCCCCHHHHH
T ss_pred             HHHHHHHHcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHH
Confidence            3445666778888889999999776432110       111238999999999999999888777  2223222 57799


Q ss_pred             HHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         296 HLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       296 ~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+++.++.+++|.++++||+..+..
T Consensus       136 ~~~~~~d~~~dg~i~~~eF~~~~~~  160 (162)
T 1top_A          136 DLMKDSDKNNDGRIDFDEFLKMMEG  160 (162)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHHS
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHhh
Confidence            9999999999999999999987754

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=96.07  E-value=0.00026  Score=57.91  Aligned_cols=63  Identities=10%  Similarity=0.083  Sum_probs=50.8

Q ss_pred             hHHHHH-HHHHH-HHhcCCCcEEEEcccccC---C---chhhHHHHHHHHHHhcCCCchhhhHhhhcchhhh
Q psy9090         260 IYAVAD-SAYQD-MMHHEEAQHIVLAGETLA---G---KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIH  323 (488)
Q Consensus       260 ~f~~~d-~~~~~-~~~~~~~q~i~~sgesga---g---kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~le  323 (488)
                      +|..+| ++.+| .|+..+++.++-. +.|.   .   ..+.++.||+.+|.++||.|+|+||+.++..+..
T Consensus        17 ~F~~fD~~dgdG~~Is~~El~~~l~~-~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~~   87 (113)
T 1xk4_C           17 TFHQYSVKLGHPDTLNQGEFKELVRK-DLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLTW   87 (113)
T ss_dssp             HHHHHHTTSSSTTSBCHHHHHHHHHH-HTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCEECHHHHHHHHHH-HhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHHH
Confidence            899999 49999 9999999887731 2221   1   2567899999999999999999999998877653

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=96.07  E-value=4.3e-05  Score=67.05  Aligned_cols=94  Identities=9%  Similarity=-0.009  Sum_probs=71.5

Q ss_pred             CceeeeCCCCCCCCCCchhhhhccCCCCCCCC-----------hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhH
Q psy9090         226 DVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE-----------PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSL  294 (488)
Q Consensus       226 ~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~-----------ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~  294 (488)
                      .++..+|.++++.|.+.||+..+.........           ..+|..+|.+.+|.|+..+.+.++  ...| -..+.+
T Consensus        62 ~lf~~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l--~~~g-~~~~~~  138 (176)
T 1nya_A           62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL--TALG-MSKAEA  138 (176)
T ss_dssp             HHHHHHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHH--HHTT-CCHHHH
T ss_pred             HHHHHhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH--HHhC-CCHHHH
Confidence            45567788899999999999877543222211           138999999999999888888766  2233 246779


Q ss_pred             HHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         295 KHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       295 k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +.+++.+|.+++|.|+++||+..+....
T Consensus       139 ~~~~~~~D~d~dg~i~~~ef~~~~~~~~  166 (176)
T 1nya_A          139 AEAFNQVDTNGNGELSLDELLTAVRDFH  166 (176)
T ss_dssp             HHHHHHHCTTCSSEEEHHHHHHHHSCCS
T ss_pred             HHHHHHhCCCCCCCCcHHHHHHHHHHHh
Confidence            9999999999999999999999886543

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=96.06  E-value=0.00017  Score=56.55  Aligned_cols=63  Identities=11%  Similarity=-0.016  Sum_probs=50.2

Q ss_pred             hHHHHH-HHHHH-HHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVAD-SAYQD-MMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d-~~~~~-~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+| ++++| .|+..+.+.++-+ +..|.-..+.++.|++.+|.+++|.|+++||+..+..+.
T Consensus        15 ~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~~   80 (92)
T 2kax_A           15 TFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLC   80 (92)
T ss_dssp             HHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence            899999 99999 9999998887732 111111356799999999999999999999999887654

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=96.05  E-value=6.3e-05  Score=59.14  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|+.+|++.+|.|+..+.+.++  ...|. ..+.++.|++.+|.+++|.++++||+.+|..+
T Consensus        13 ~~F~~~D~d~dG~I~~~el~~~l--~~~g~-~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~   72 (92)
T 1fi6_A           13 NQFKTIQPDLNGFIPGSAAKEFF--TKSKL-PILELSHIWELSDFDKDGALTLDEFCAAFHLV   72 (92)
T ss_dssp             HHHTTTCCSTTCEEEHHHHHHHH--HHHSS-CHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHH--HHcCC-CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence            38889999999999988888777  23332 35678999999999999999999999988654

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=96.03  E-value=2.8e-05  Score=68.34  Aligned_cols=93  Identities=11%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHL  301 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~  301 (488)
                      .+..++..+|.++++.|.+.||...+...   ..-..+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.+++.+
T Consensus        45 ~~~~l~~~~D~~~~g~i~~~ef~~~~~~~---~~~~~~F~~~D~d~~G~i~~~el~~~l--~~~g~~~~~~~~~~~~~~~  119 (172)
T 2znd_A           45 TVRSIISMFDRENKAGVNFSEFTGVWKYI---TDWQNVFRTYDRDNSGMIDKNELKQAL--SGFGYRLSDQFHDILIRKF  119 (172)
T ss_dssp             HHHHHHHHHCSSSSSEECHHHHHHHHHHH---HHHHHHHHHHCTTCSSEECHHHHHHHH--HHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCHHHHHHHHHHH---HHHHHHHHHHCCCCCCccCHHHHHHHH--HHcCCCCCHHHHHHHHHHh
Confidence            34455667788888999999999776432   112348999999999999999888776  222322 367799999999


Q ss_pred             HHhcCCCchhhhHhhhcch
Q psy9090         302 IFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       302 ~~~~~g~~~~~e~i~~~~~  320 (488)
                      +.+++|.++++||+..+..
T Consensus       120 d~~~dg~i~~~eF~~~~~~  138 (172)
T 2znd_A          120 DRQGRGQIAFDDFIQGCIV  138 (172)
T ss_dssp             CTTCSSSEEHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHH
Confidence            9999999999999988754

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=96.02  E-value=4.4e-05  Score=68.01  Aligned_cols=95  Identities=7%  Similarity=-0.006  Sum_probs=70.6

Q ss_pred             CceeeeCCCCCCCCCCchhhhhccCCCC--------CCCC------hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-c
Q psy9090         226 DVLLFINPNTHLNLYGTKYHFKYKFKSR--------SDNE------PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-K  290 (488)
Q Consensus       226 ~il~~Inp~~~~~i~~~ef~~~~~~~~~--------~~~~------ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-k  290 (488)
                      .++..+|.++++.|.+.||+..+.....        ....      ..+|..+|.+.+|.|+..+.+.++-  ..|.. .
T Consensus        66 ~l~~~~D~d~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~--~~g~~~~  143 (191)
T 1uhk_A           66 AFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK--AAGIIQS  143 (191)
T ss_dssp             HHHHHTTCCTTCEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH--HHTSCCS
T ss_pred             HHHHHhCcCCCCcCcHHHHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH--HhCCCCC
Confidence            3455567888888999999876543211        1111      1699999999999999999988773  22322 2


Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+.++.+++.+|.+++|.++++||+..+....
T Consensus       144 ~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~~~  175 (191)
T 1uhk_A          144 SEDCEETFRVCDIDESGQLDVDEMTRQHLGFW  175 (191)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence            67799999999999999999999999887543

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=96.02  E-value=7.3e-05  Score=67.46  Aligned_cols=82  Identities=10%  Similarity=0.073  Sum_probs=64.3

Q ss_pred             CCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCch
Q psy9090         236 HLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAK  310 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~  310 (488)
                      ++.|.+.+|+..+..........    .+|..+|.+.+|.|+..+.+.++ . |+  .-..+.+..|++.++.+++|.|+
T Consensus       103 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~--~~~~~~~~~l~~~~D~d~dG~I~  179 (196)
T 3dtp_E          103 PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGE--KFSQDEVDQALSEAPIDGNGLID  179 (196)
T ss_dssp             SSCCBHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSS--CCCHHHHHHHHHSSCEETTEECH
T ss_pred             cCCCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCC--CCCHHHHHHHHHHcCCCCCCEEe
Confidence            56788999998875443222222    39999999999999999999888 4 43  11367899999999999999999


Q ss_pred             hhhHhhhcch
Q psy9090         311 VGEKIEKCVN  320 (488)
Q Consensus       311 ~~e~i~~~~~  320 (488)
                      |+||+..|..
T Consensus       180 ~~EF~~~l~~  189 (196)
T 3dtp_E          180 IKKFAQILTK  189 (196)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHHc
Confidence            9999988754

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=96.00  E-value=0.0003  Score=54.87  Aligned_cols=68  Identities=10%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             hhHHHHH-HHHHH-HHhcCCCcEEEEc--cc-ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhh
Q psy9090         259 HIYAVAD-SAYQD-MMHHEEAQHIVLA--GE-TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIG  326 (488)
Q Consensus       259 h~f~~~d-~~~~~-~~~~~~~q~i~~s--ge-sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafg  326 (488)
                      .+|..+| ++.+| .|+..+.+.++-.  ++ .|.. ..+.++.+++.++.+++|.++++||+..+..+..+..
T Consensus        13 ~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~~~~~   86 (93)
T 1k2h_A           13 NVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACN   86 (93)
T ss_dssp             HHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence            3899999 79888 8888888877621  00 3322 2677999999999999999999999999888766543

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=95.99  E-value=3.1e-05  Score=69.82  Aligned_cols=103  Identities=11%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-cccc---CCc--hhhH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-GETL---AGK--TTSL  294 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-gesg---agk--te~~  294 (488)
                      +..++..+|.++++.|.+.||...+.........   ..+|+.+|.+.+|.|+..+...++.. |..+   ...  .+.+
T Consensus        54 ~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~  133 (198)
T 2r2i_A           54 VEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFT  133 (198)
T ss_dssp             HHHHHHHHCTTCSSCEEHHHHHHHHHHHSSCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHTTGGGGSSSCCCHHHHH
T ss_pred             HHHHHHHHCCCCCCeEcHHHHHHHHHHHccCchHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence            5556778899999999999999877533221111   23899999999999999888877632 2111   111  3458


Q ss_pred             HHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         295 KHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       295 k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      +.+++.+|.+++|.|+++||+..+..   +.+.+.
T Consensus       134 ~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~  168 (198)
T 2r2i_A          134 NMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILT  168 (198)
T ss_dssp             HHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHh
Confidence            99999999999999999999988764   555554

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=95.97  E-value=8.6e-05  Score=64.90  Aligned_cols=97  Identities=9%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKH  300 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~  300 (488)
                      ..+..++..+|.++++.|.+.||+..+...   ..-..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.
T Consensus        42 ~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~---~~~~~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~~~~~  116 (167)
T 1gjy_A           42 ETCRLMVSMLDRDMSGTMGFNEFKELWAVL---NGWRQHFISFDSDRSGTVDPQELQKALT--TMGFRLNPQTVNSIAKR  116 (167)
T ss_dssp             HHHHHHHHHHCTTCCSCBCHHHHHHHHHHH---HHHHHHHHHHCTTCCSEECHHHHHHHHH--TTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCCHHHHHHHHHHH---HHHHHHHHHhCCCCCCcCCHHHHHHHHH--HcCCCCCHHHHHHHHHH
Confidence            345566777889999999999999877542   1123489999999999999998887773  22322 36778899988


Q ss_pred             HHHhcCCCchhhhHhhhcch---hhhhh
Q psy9090         301 LIFLGQGAAKVGEKIEKCVN---VIHAI  325 (488)
Q Consensus       301 ~~~~~~g~~~~~e~i~~~~~---~leaf  325 (488)
                      +  +++|.++++||+..+..   +.++|
T Consensus       117 ~--d~dg~i~~~eF~~~~~~~~~~~~~F  142 (167)
T 1gjy_A          117 Y--STSGKITFDDYIACCVKLRALTDSF  142 (167)
T ss_dssp             T--CBTTBEEHHHHHHHHHHHHHHHHHH
T ss_pred             h--CcCCcCcHHHHHHHHHHHHHHHHHH
Confidence            8  89999999999987764   44555

>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A

Probab=95.96  E-value=6e-05  Score=60.33  Aligned_cols=64  Identities=6%  Similarity=-0.001  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEc------ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLA------GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~s------gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|..+|.+ .|.|+..+++.++-+      |+-|.-..+.++.||+.+|.++||.|+|+||+.+|.....+
T Consensus        15 ~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~~~   84 (100)
T 1psr_A           15 MFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATD   84 (100)
T ss_dssp             HHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence            88888865 678888888887732      21001124578999999999999999999999988765433

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=95.95  E-value=5.7e-05  Score=66.76  Aligned_cols=92  Identities=10%  Similarity=0.005  Sum_probs=68.8

Q ss_pred             eeeeCCCCCCCCCCchhhhhccCCCCC-------CCC-----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHH
Q psy9090         228 LLFINPNTHLNLYGTKYHFKYKFKSRS-------DNE-----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLK  295 (488)
Q Consensus       228 l~~Inp~~~~~i~~~ef~~~~~~~~~~-------~~~-----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k  295 (488)
                      +..+|.++++.|.+.||...+......       ...     ..+|+.+|.+.+|.|+..+.+.++  ...| -..+.++
T Consensus        66 f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l--~~~g-~~~~~~~  142 (185)
T 2sas_A           66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYC--KNFQ-LQCADVP  142 (185)
T ss_dssp             HHHHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHT--TSSC-CCCSSHH
T ss_pred             HHhcCCCCCCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHH--HHhC-CCHHHHH
Confidence            556778888889999998765432110       011     129999999999999988887766  2233 2367899


Q ss_pred             HHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         296 HLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       296 ~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+++.+|.+++|.++++||+..+...+
T Consensus       143 ~~~~~~D~d~dG~i~~~ef~~~~~~~~  169 (185)
T 2sas_A          143 AVYNVITDGGKVTFDLNRYKELYYRLL  169 (185)
T ss_dssp             HHHHHHHTTTTSCCSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcCcHHHHHHHHHHHh
Confidence            999999999999999999999887654

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=95.95  E-value=0.00012  Score=61.71  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             CCCCCCCCchhhhhccCCCCCCCC---h---hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcC
Q psy9090         234 NTHLNLYGTKYHFKYKFKSRSDNE---P---HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQ  306 (488)
Q Consensus       234 ~~~~~i~~~ef~~~~~~~~~~~~~---p---h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~  306 (488)
                      ++++.|.+.||+..+........+   .   .+|..+|.+.+|.|+..+.+.++-+ |+.  -..+.++.+++.++. ++
T Consensus        49 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--~~~~~~~~~~~~~d~-~d  125 (140)
T 1ggw_A           49 TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEK--LSNEEMDELLKGVPV-KD  125 (140)
T ss_dssp             TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSC--SCHHHHHHHHHHTTC-SS
T ss_pred             CCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC--CCHHHHHHHHHhccC-CC
Confidence            456778899999887655432222   1   2899999999999999998887732 331  136779999999999 99


Q ss_pred             CCchhhhHhhhcc
Q psy9090         307 GAAKVGEKIEKCV  319 (488)
Q Consensus       307 g~~~~~e~i~~~~  319 (488)
                      |.++++||+..+.
T Consensus       126 g~i~~~eF~~~~~  138 (140)
T 1ggw_A          126 GMVNYHDFVQMIL  138 (140)
T ss_dssp             CCSTTTHHHHHHH
T ss_pred             CcEeHHHHHHHHh
Confidence            9999999998764

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=95.87  E-value=0.0002  Score=54.23  Aligned_cols=60  Identities=13%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEccccc-CC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETL-AG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesg-ag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +|..+|.+.+|.|+..+.+.++-  ..| .. ..+.++.+++.++.+++|.++++||+..+...
T Consensus        13 ~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   74 (81)
T 1c7v_A           13 AFKVFDANGDGVIDFDEFKFIMQ--KVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKS   74 (81)
T ss_dssp             HHHHHSCSGGGEECHHHHHHHSS--TTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHCC
T ss_pred             HHHHHCCCCCCcCCHHHHHHHHH--HhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhh
Confidence            89999999999999998887772  223 22 26779999999999999999999999887654

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=95.81  E-value=0.00024  Score=55.19  Aligned_cols=61  Identities=11%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        25 ~F~~~D~d~~G~i~~~el~~~l--~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~~~   86 (90)
T 1avs_A           25 AFDMFDADGGGDISTKELGTVM--RMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM   86 (90)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHH--HHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHHh
Confidence            8999999999988888888776  3333222 67799999999999999999999999887654

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=95.79  E-value=0.00011  Score=69.09  Aligned_cols=94  Identities=10%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             ceeeeCCCCCCCCCCchhhhhccCCC-------CCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc-cccc--CCchh
Q psy9090         227 VLLFINPNTHLNLYGTKYHFKYKFKS-------RSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA-GETL--AGKTT  292 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~~~~~~-------~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s-gesg--agkte  292 (488)
                      ++..+|+++.+.|.+.||+..+....       .....    ..+|..+|.+.+|.|+..+.+.++-. |++.  .-..+
T Consensus       152 ~~~~~d~~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~~~~~~~~~~~~~~  231 (263)
T 2f33_A          152 MLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDIN  231 (263)
T ss_dssp             HHHHTCSSSSSCBCHHHHHHHSCTTTCSHHHHHHTCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHHHHHHHCTTTCCTT
T ss_pred             HHHhcCCCCCCeEcHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHH
Confidence            66778899999999999998775421       01111    23999999999999999998877743 3321  11256


Q ss_pred             hHHHHHHH-HHHhcCCCchhhhHhhhcch
Q psy9090         293 SLKHLLKH-LIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       293 ~~k~i~~~-~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .++.+++. +|.++||.++++||+..+.+
T Consensus       232 e~~~~~~~~~D~d~dG~i~~~EF~~~~~~  260 (263)
T 2f33_A          232 NISTYKKNIMALSDGGKLYRTDLALILSA  260 (263)
T ss_dssp             THHHHHHHHHTTSBTTEECGGGTHHHHCC
T ss_pred             HHHHHHHHhhccCCCCeEcHHHHHHHHhc
Confidence            78888887 79999999999999988754

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=95.78  E-value=0.00016  Score=54.18  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        11 ~~F~~~D~d~~G~i~~~el~~~l--~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~   73 (77)
T 2joj_A           11 EAFDLFDTNKTGSIDYHELKVAM--RALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKI   73 (77)
T ss_dssp             HHHHHHCCSSSSEEEHHHHHHHH--HHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTHHH
T ss_pred             HHHHHhCCCCCCCCcHHHHHHHH--HHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHh
Confidence            38889999988988888888766  2333322 66789999999999999999999999887655

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=95.77  E-value=0.00013  Score=60.55  Aligned_cols=91  Identities=12%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCC--CCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKS--RSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKH  296 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~--~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~  296 (488)
                      .+..++..+|.++++.|.+.||...+....  ....+    ..+|+.+|.+.+|.|+..+.+.++  ..  .|... ++.
T Consensus        37 ~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l--~~--~~~~~-~~~  111 (134)
T 1jfj_A           37 LLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFF--KK--HGIEK-VAE  111 (134)
T ss_dssp             HHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHH--TT--TTCHH-HHH
T ss_pred             HHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHHHHH--HH--hCHHH-HHH
Confidence            344556677888888999999998774211  11111    238999999999988888888777  22  22322 899


Q ss_pred             HHHHHHHhcCCCchhhhHhhhc
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +++.++.+++|.++++||+..+
T Consensus       112 ~~~~~D~~~dg~i~~~ef~~~l  133 (134)
T 1jfj_A          112 QVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             HHHHHHCSSSSEEEHHHHHHHH
T ss_pred             HHHHhCCCCCCcEeHHHHHHHh
Confidence            9999999999999999998764

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=95.77  E-value=0.00014  Score=58.88  Aligned_cols=61  Identities=10%  Similarity=0.039  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|+.+|+ .+|.|+..+.+.++  ..+|- ..+.+..|++.+|.++||.++++||+.+|..+--+
T Consensus        20 ~F~~~D~-~dG~Is~~el~~~l--~~~gl-~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~   80 (106)
T 1eh2_A           20 IFDSLSP-VNGFLSGDKVKPVL--LNSKL-PVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCA   80 (106)
T ss_dssp             HHTTSCC-SSSCCBHHHHHHHH--HTTTC-CHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCC-CCCeEcHHHHHHHH--HHcCC-CHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHH
Confidence            8888898 88999988888877  33442 36679999999999999999999999998654433

>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A

Probab=95.76  E-value=0.00051  Score=54.37  Aligned_cols=63  Identities=6%  Similarity=0.049  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEc--cc-ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLA--GE-TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~s--ge-sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|. ..|.|+..+++.++-+  |+ -|.. ..+.++.||+.+|.++||.|+|+||+.++..+.
T Consensus        13 ~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~~   79 (96)
T 1a4p_A           13 FTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT   79 (96)
T ss_dssp             HHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence            38999993 2358888888887732  21 1111 256799999999999999999999998887644

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=95.75  E-value=0.00014  Score=61.83  Aligned_cols=88  Identities=9%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLL  298 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~  298 (488)
                      +..++..+|.+    |.+.+|+..+........+    ..+|..+|.+++|.|+..+.+.++-  ..|.. ..+.++.++
T Consensus        53 ~~~l~~~~d~~----i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~~  126 (146)
T 2qac_A           53 EKKIKELYGDN----LTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILT--TWGDALTDQEAIDAL  126 (146)
T ss_dssp             HHHHHHHHCSE----ECHHHHHHHHHHTCCTTCCHHHHHHHHHTTCTTCSSEEEHHHHHHHHH--HSSSCCCHHHHHHHH
T ss_pred             HHHHHHHhCCC----CCHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCCCCCCHHHHHHHHH--HhCCCCCHHHHHHHH
Confidence            33344444544    7889999877543222212    1399999999999999999988773  22322 267789999


Q ss_pred             HHHHHhcCCCchhhhHhhhcc
Q psy9090         299 KHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       299 ~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +.+  +++|.++++||+..+.
T Consensus       127 ~~~--d~dg~i~~~eF~~~l~  145 (146)
T 2qac_A          127 NAF--SSEDNIDYKLFCEDIL  145 (146)
T ss_dssp             HHH--CSSSEEEHHHHHHHHT
T ss_pred             HHc--CCCCcCcHHHHHHHHh
Confidence            988  9999999999998764

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=95.75  E-value=4.9e-05  Score=74.60  Aligned_cols=113  Identities=13%  Similarity=0.060  Sum_probs=81.4

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCC-ceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcE
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGD-VLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQH  279 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~-il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~  279 (488)
                      .++...+...+   .........+.. ++..+|+++++.|.+.+|+..+....   .-..+|..+|.+.+|.|+..+.+.
T Consensus       204 ~Is~~El~~~l---~g~~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~~~~---~l~~~F~~~D~d~dG~Is~~El~~  277 (323)
T 1ij5_A          204 TLSRKEFREHF---VRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLL---VLRILYAFADFDKSGQLSKEEVQK  277 (323)
T ss_dssp             EECHHHHHHHH---HHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH---HHHHHHHHTCSSSCSSEEHHHHHH
T ss_pred             cCcHHHHHHHH---cCCCCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHHHHH---HHHHHHHHhCCCCCCCccHHHHHH
Confidence            34555554444   222222344556 77788999999999999997765432   223499999999999999988877


Q ss_pred             EE-Ec-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         280 IV-LA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       280 i~-~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      ++ -. |+.  -..+.++.|++.+|.++||.|+++||+..+...
T Consensus       278 ~l~~~~g~~--ls~~e~~~l~~~~D~d~dG~Is~~EF~~~~~~~  319 (323)
T 1ij5_A          278 VLEDAHIPE--SARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLM  319 (323)
T ss_dssp             HHHHTTCCG--GGCSTHHHHHHHHTTTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHcCCC--CCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHh
Confidence            66 32 431  135679999999999999999999999987654

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=95.75  E-value=0.00013  Score=59.48  Aligned_cols=61  Identities=13%  Similarity=0.099  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|..+|++.+|.|+..+.+.++.    |.+. .+.++.|++.+|.+++|.++++||+.+|..+--+
T Consensus        19 ~F~~~D~d~dG~I~~~El~~~l~----~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~~~   80 (111)
T 2kgr_A           19 LFNSHDKTMSGHLTGPQARTILM----QSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVA   80 (111)
T ss_dssp             HHHTTSCSSCCEEEHHHHHHHHH----TTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCcHHHHHHHHH----hCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHH
Confidence            89999999999999888887772    3333 5678999999999999999999999988665433

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=95.71  E-value=7.6e-05  Score=56.94  Aligned_cols=64  Identities=13%  Similarity=0.081  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEccccc--CCc-hhhHHH----HHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETL--AGK-TTSLKH----LLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesg--agk-te~~k~----i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|  .+. .+.++.    +++.+|.+++|.|+++||+..+..++.+
T Consensus        11 ~~F~~~D~d~~G~i~~~el~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~~~~   81 (83)
T 1yx7_A           11 AAFKKLDANGDGYVTALELQTFMV--TLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLCQ   81 (83)
T ss_dssp             HHHHHHSSSCSSSCSHHHHHHHHH--HHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHHH--HHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHHHHH
Confidence            489999999989888888887763  223  222 456777    9999999999999999999887777654

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=95.68  E-value=7e-05  Score=66.94  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-----cccc------C
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-----GETL------A  288 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-----gesg------a  288 (488)
                      .+..++..+|.++++.|.+.||...+.........   ..+|..+|.+.+|.|+..+...++..     |+..      .
T Consensus        64 ~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~  143 (193)
T 1bjf_A           64 FAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDES  143 (193)
T ss_dssp             HHHHHHHHHCSSCSSEEEHHHHHHHHHHHTSSCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGS
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccc
Confidence            45566778889999999999999876533221111   12899999999999988888776632     3100      0


Q ss_pred             CchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         289 GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       289 gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ...+.++.+++.+|.+++|.|+++||+..+.
T Consensus       144 ~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  174 (193)
T 1bjf_A          144 TPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK  174 (193)
T ss_dssp             SHHHHHHHHHHHSCTTCSSEECHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            1134588999999999999999999998775

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=95.67  E-value=1.6e-05  Score=73.25  Aligned_cols=87  Identities=14%  Similarity=-0.011  Sum_probs=63.4

Q ss_pred             CCCCCCCCchhhhhccCCCCCC---CChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCc
Q psy9090         234 NTHLNLYGTKYHFKYKFKSRSD---NEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       234 ~~~~~i~~~ef~~~~~~~~~~~---~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~  309 (488)
                      ++++.|.+.||+..+.......   .-..+|..+|.+.+|.|+..+.+.++.. |+.+ -..+.++.+++.+|.+++|.|
T Consensus       106 d~~g~I~~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~-~~~~e~~~l~~~~D~d~dG~I  184 (219)
T 3cs1_A          106 ENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWG-AKVEDPAALFKELDKNGTGSV  184 (219)
T ss_dssp             HTSCCCSSBCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHHHT-CCCSCHHHHHHHHCTTSSSEE
T ss_pred             CCCCcCCHHHHHHHHHHHhccchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcccC-CCHHHHHHHHHHhCCCCCCcE
Confidence            4567788999987643221111   1123899999999999999999887732 3311 124668999999999999999


Q ss_pred             hhhhHhhhcchh
Q psy9090         310 KVGEKIEKCVNV  321 (488)
Q Consensus       310 ~~~e~i~~~~~~  321 (488)
                      +++||+..+...
T Consensus       185 ~~~EF~~~~~~~  196 (219)
T 3cs1_A          185 TFDEFAAWASAV  196 (219)
T ss_dssp             EHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHh
Confidence            999999988753

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=95.62  E-value=0.00029  Score=55.47  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.+|.+++|.++++||+..+.
T Consensus        33 ~~F~~~D~d~~G~I~~~El~~~l~--~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~   92 (94)
T 2kz2_A           33 EAFRVEDKDGNGYISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT   92 (94)
T ss_dssp             HHHHHHCTTCCSCBCHHHHHHHHH--HHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHCCCCcCcCCHHHHHHHHH--HhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            389999999999999888887772  23322 267799999999999999999999998764

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=95.59  E-value=0.00026  Score=55.47  Aligned_cols=64  Identities=11%  Similarity=0.063  Sum_probs=50.5

Q ss_pred             hhHHHHHH-HHHH-HHhcCCCcEEE-Ec-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         259 HIYAVADS-AYQD-MMHHEEAQHIV-LA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       259 h~f~~~d~-~~~~-~~~~~~~q~i~-~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      .+|..+|. +++| .|+..+.+.++ -+ |..  -..+.++.+++.+|.+++|.|+++||+..+..+..+
T Consensus        14 ~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~--~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~   81 (93)
T 1xk4_A           14 DVYHKYSLIKGNFHAVYRDDLKKLLETESPQY--IRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVA   81 (93)
T ss_dssp             HHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHH--HHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCcCeECHHHHHHHHHHHCccc--CCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence            38999999 9999 99999988776 21 321  013668999999999999999999999988765543

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=95.56  E-value=0.00022  Score=60.48  Aligned_cols=58  Identities=12%  Similarity=0.016  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +|..+| +.+|.|+..+.+.++.+  +|- ..+.++.|++.+|.++||.++++||+.+|..+
T Consensus        56 ~F~~fD-d~dG~Is~~El~~~l~~--~gl-~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li  113 (139)
T 2jq6_A           56 IFYTLS-PVNGKITGANAKKEMVK--SKL-PNTVLGKIWKLADVDKDGLLDDEEFALANHLI  113 (139)
T ss_dssp             HHHHSC-CSSSEEEHHHHHHHHHH--TTC-CHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHH
T ss_pred             HHHHhC-CCCCeECHHHHHHHHHH--hCc-CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            999999 99999999999888833  442 36779999999999999999999999988644

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=95.55  E-value=0.00015  Score=62.40  Aligned_cols=82  Identities=10%  Similarity=0.002  Sum_probs=61.7

Q ss_pred             CCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCch
Q psy9090         236 HLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAK  310 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~  310 (488)
                      ++.|.+.+|+..+........+.    .+|..+|.+.+|.|+..+.+.++-  ..|-. ..+.++.|++.++.+ +|.++
T Consensus        64 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~~~~~d~~-dg~i~  140 (156)
T 1wdc_B           64 PGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLE--NMGDNFNKDEMRMTFKEAPVE-GGKFD  140 (156)
T ss_dssp             SSCCCHHHHHHHHHHHTCSCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHH--HSSSCCCHHHHHHHHHHCCEE-TTEEC
T ss_pred             CCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCcCCCCccCHHHHHHHHH--HhCCCCCHHHHHHHHHhcCCC-CCEEe
Confidence            57788999998775432212122    289999999999999999888773  22322 267799999999999 99999


Q ss_pred             hhhHhhhcch
Q psy9090         311 VGEKIEKCVN  320 (488)
Q Consensus       311 ~~e~i~~~~~  320 (488)
                      |+||+..+..
T Consensus       141 ~~eF~~~~~~  150 (156)
T 1wdc_B          141 YVKFTAMIKG  150 (156)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999988753

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=95.54  E-value=0.00025  Score=55.35  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|. ..+.++.+++.+|.+++|.++++||+..+..+
T Consensus        32 ~F~~~D~d~~G~I~~~El~~~l--~~~g~-~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~~   90 (91)
T 2pmy_A           32 VFAACDANRSGRLEREEFRALC--TELRV-RPADAEAVFQRLDADRDGAITFQEFARGFLGS   90 (91)
T ss_dssp             HHHHHCTTCSSSEEHHHHHHHH--HHTTC-CHHHHHHHHHHHCTTCSSEECHHHHTHHHHHT
T ss_pred             HHHHHCCCCCCCCcHHHHHHHH--HHcCc-CHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHH
Confidence            8888888888888888887766  22232 35678999999999999999999999877543

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=95.50  E-value=0.00015  Score=52.55  Aligned_cols=60  Identities=18%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++-.  .|... .+.++.+++.+|.+++|.++++||+..+..
T Consensus         4 ~~F~~~D~d~~G~i~~~e~~~~l~~--~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~   64 (66)
T 3li6_A            4 ALFKEIDVNGDGAVSYEEVKAFVSK--KRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS   64 (66)
T ss_dssp             HHHHHHCTTCSSSCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred             HHHHHHCCCCCCcccHHHHHHHHHH--ccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence            4677777777777777776665522  12112 567899999999999999999999987754

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=95.48  E-value=0.00011  Score=62.10  Aligned_cols=85  Identities=12%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             CCCCCCCCchhhhhccCCC-CCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCC
Q psy9090         234 NTHLNLYGTKYHFKYKFKS-RSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQG  307 (488)
Q Consensus       234 ~~~~~i~~~ef~~~~~~~~-~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g  307 (488)
                      ++.+.|.+.||+..+.... .....    ..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.++.+++|
T Consensus        50 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~--~~g~~~~~~~~~~~~~~~d~~~dg  127 (145)
T 2bl0_B           50 LNAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLL--NLGDALTSSEVEELMKEVSVSGDG  127 (145)
T ss_dssp             HTSSEECHHHHHHHHTSCCCCGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHH--HSSSCCCHHHHHHHHTTCCCCTTS
T ss_pred             cCCCeEcHHHHHHHHHHHhhcCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHH--HcCCCCCHHHHHHHHHHcCCCCCC
Confidence            4456788999998776542 11111    2299999999999999998887772  22322 267789999999999999


Q ss_pred             CchhhhHhhhcch
Q psy9090         308 AAKVGEKIEKCVN  320 (488)
Q Consensus       308 ~~~~~e~i~~~~~  320 (488)
                      .++++||+..+..
T Consensus       128 ~i~~~eF~~~~~~  140 (145)
T 2bl0_B          128 AINYESFVDMLVT  140 (145)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             cEeHHHHHHHHHh
Confidence            9999999988753

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=95.34  E-value=0.00039  Score=54.10  Aligned_cols=61  Identities=15%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.+++.++.+++|.|+++||+..+....
T Consensus        14 ~F~~~D~d~~G~i~~~el~~~l--~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~   75 (92)
T 2kn2_A           14 AFKVFDKDQNGYISASELRHVM--INLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR   75 (92)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHH--HHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCeEcHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcc
Confidence            8999999999999988888777  233322 267799999999999999999999998776543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=95.24  E-value=0.00044  Score=73.72  Aligned_cols=97  Identities=9%  Similarity=0.028  Sum_probs=55.2

Q ss_pred             ccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEc--ccccCCchhhHHHHH
Q psy9090         221 YSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLA--GETLAGKTTSLKHLL  298 (488)
Q Consensus       221 yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~s--gesgagkte~~k~i~  298 (488)
                      ...+..++..+|.++++.|+++||+..+......+.-..+|+.+|++ +|.|+..+++.++..  ||.+. ..+.++.||
T Consensus        46 ~~el~~lf~~~D~d~~G~I~f~EF~~~~~~l~~~~el~~aF~~fD~~-~G~Is~~EL~~fL~~~qge~~l-s~ee~~~ii  123 (624)
T 1djx_A           46 DGYARKIFRECDHSQTDSLEDEEIETFYKMLTQRAEIDRAFEEAAGS-AETLSVERLVTFLQHQQREEEA-GPALALSLI  123 (624)
T ss_dssp             ----------------------CTTHHHHHHTCCHHHHHHHHHHHTT-SSSEEHHHHHHHHHHTSCCSSC-SHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhccHHHHHHHHHHhcCC-CCeecHHHHHHHHHHHhCCCCC-CHHHHHHHH
Confidence            35677788899999999999999998876432211112499999986 889999998887742  55322 367799999


Q ss_pred             HHHHHh----cCCCchhhhHhhhcc
Q psy9090         299 KHLIFL----GQGAAKVGEKIEKCV  319 (488)
Q Consensus       299 ~~~~~~----~~g~~~~~e~i~~~~  319 (488)
                      +.++.+    ++|.++++||+..|.
T Consensus       124 ~~~d~d~~~~~dG~Is~deF~~~L~  148 (624)
T 1djx_A          124 ERYEPSETAKAQRQMTKDGFLMYLL  148 (624)
T ss_dssp             HHHCCCHHHHHTTEECHHHHHHHHH
T ss_pred             HHhCCChhhccCCCCCHHHHHHHhc
Confidence            999876    789999999998764

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=95.24  E-value=0.0003  Score=56.37  Aligned_cols=62  Identities=8%  Similarity=0.083  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHHHHHhcCCCcEEEEc--c-cccCCch------------hhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         258 PHIYAVADSAYQDMMHHEEAQHIVLA--G-ETLAGKT------------TSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       258 ph~f~~~d~~~~~~~~~~~~q~i~~s--g-esgagkt------------e~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ..+|+.+|.+++|.|+..+...++-.  + -.|.+.+            ..++.+++.+|.++||.|+++||+..+.
T Consensus        23 ~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~   99 (103)
T 1snl_A           23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQ   99 (103)
T ss_dssp             HHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHh
Confidence            35999999999999998888877632  0 0122222            2388899999999999999999998764

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=95.21  E-value=0.00075  Score=52.05  Aligned_cols=62  Identities=10%  Similarity=0.090  Sum_probs=48.4

Q ss_pred             hhHHHHH-HHHHH-HHhcCCCcEEEEccc--ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVAD-SAYQD-MMHHEEAQHIVLAGE--TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d-~~~~~-~~~~~~~q~i~~sge--sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+| ++.+| .|+..+.+.++-. +  .|.. ..+.++.+++.+|.+++|.++++||+..+..+
T Consensus        14 ~~F~~~D~~d~~G~~i~~~el~~~l~~-~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   80 (90)
T 1k8u_A           14 AIFHKYSGREGDKHTLSKKELKELIQK-ELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL   80 (90)
T ss_dssp             HHHHHHHTSSSCTTEEEHHHHHHHHHH-HSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCcCCHHHHHHHHHH-hcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            4899999 59999 8888888776621 0  2211 25679999999999999999999999887654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.20  E-value=0.021  Score=55.40  Aligned_cols=30  Identities=20%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ..++|+|++|.|||++.++.+.++||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            579999999999999888889999998753

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=95.13  E-value=0.0002  Score=64.57  Aligned_cols=118  Identities=9%  Similarity=0.081  Sum_probs=81.5

Q ss_pred             hhhhhccchhhHHHHHHhhhc----cCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         196 LAALETISEDNIVQELEERHN----SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       196 l~~l~~l~e~~l~~~L~~r~~----~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      ...-..++.+++...++....    .......+..++..+|.++++.|.+.||+..+...   ..-..+|..+|.+.+|.
T Consensus        43 ~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~---~~~~~~F~~~D~d~~G~  119 (198)
T 1juo_A           43 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL---NGWRQHFISFDTDRSGT  119 (198)
T ss_dssp             HTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH---HHHHHHHHTTCTTCCSE
T ss_pred             CCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH---HHHHHHHHHhCCCCCCc
Confidence            333444565555555544221    01223345567778899999999999999877532   11224899999999999


Q ss_pred             HhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         272 MHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      |+..+.+.++-  ..|.. ..+.++.+++.+  +++|.++++||+..+..
T Consensus       120 I~~~el~~~l~--~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~  165 (198)
T 1juo_A          120 VDPQELQKALT--TMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVK  165 (198)
T ss_dssp             ECHHHHHHHHH--HTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHH--HhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHH
Confidence            99999887773  22322 367789999988  89999999999987764

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=94.95  E-value=0.00032  Score=52.22  Aligned_cols=63  Identities=14%  Similarity=0.230  Sum_probs=48.4

Q ss_pred             hhHHHH-HHHHH-HHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVA-DSAYQ-DMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~-d~~~~-~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+ |.+.+ |.|+..+.+.++-. |..-....+.++.+++.++.+++|.++++||+..+..+
T Consensus         9 ~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~   74 (76)
T 1qx2_A            9 GAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI   74 (76)
T ss_dssp             HHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             HHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            388888 99988 88888888877632 32100034679999999999999999999999887654

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=94.92  E-value=0.00069  Score=58.24  Aligned_cols=66  Identities=8%  Similarity=0.036  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch----hhhhhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN----VIHAIG  326 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~----~leafg  326 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|... .+.++.+++.++.+++|.++++||+..+..    +.+||-
T Consensus        54 ~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~~~~~~i~~aF~  124 (150)
T 2jjz_A           54 EKYMEFDLNNEGEIDLMSLKRMME--KLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVM  124 (150)
T ss_dssp             HHHTTSCCCTTSSBCHHHHHHHHH--HTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHHHhCCCCcCcCCHHHHHHHHH--HcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHhHHHHHHHHH
Confidence            388888888888888888887762  223222 567999999999999999999999988765    555553

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=94.88  E-value=0.00017  Score=52.97  Aligned_cols=59  Identities=8%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.+++.++.+++|.++++||+..+.+
T Consensus        11 ~F~~~D~d~~G~i~~~el~~~l--~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~   70 (71)
T 2b1u_A           11 AFRAFDQDGDGHITVDELRRAM--AGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLAQ   70 (71)
T ss_dssp             HHTTSCCSSSSEEEHHHHHHHG--GGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHHTC
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhh
Confidence            6777777777777777777666  222322 2567899999999999999999999987653

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=94.72  E-value=0.00053  Score=74.50  Aligned_cols=93  Identities=9%  Similarity=-0.016  Sum_probs=73.2

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccC-CchhhHHHHHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLA-GKTTSLKHLLKH  300 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesga-gkte~~k~i~~~  300 (488)
                      ..+..++..+|.++++.|.+.||...+...   ..-..+|+.+|.+.+|.|+..+.+.++-  ..|. -..+.++.|++.
T Consensus       575 ~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~---~~l~~~F~~~D~d~dG~Is~~El~~~L~--~~G~~ls~~~~~~l~~~  649 (714)
T 3bow_A          575 ETCKIMVDMLDEDGSGKLGLKEFYILWTKI---QKYQKIYREIDVDRSGTMNSYEMRKALE--EAGFKLPCQLHQVIVAR  649 (714)
T ss_dssp             HHHHHHHHHHCCSSCSSBCHHHHHHHHHHH---HHHHHHHHHHCTTCCSSEEHHHHHHHHH--HTTEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH---HHHHHHHHHhCCCCCCeECHHHHHHHHH--HcCCCCCHHHHHHHHHH
Confidence            345567778899999999999999877543   1123499999999999999999988773  2221 126779999999


Q ss_pred             HHHhcCCCchhhhHhhhcch
Q psy9090         301 LIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       301 ~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ++ ++||.|+++||+..+..
T Consensus       650 ~D-d~dG~Isf~EF~~~l~~  668 (714)
T 3bow_A          650 FA-DDELIIDFDNFVRCLVR  668 (714)
T ss_dssp             HS-CTTCEECHHHHHHHHHH
T ss_pred             hC-CCCCeEcHHHHHHHHHH
Confidence            99 99999999999988864

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=94.51  E-value=0.0014  Score=51.67  Aligned_cols=63  Identities=13%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             hhHHHHH-HHHHH-HHhcCCCcEEEEccccc----C-CchhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVAD-SAYQD-MMHHEEAQHIVLAGETL----A-GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d-~~~~~-~~~~~~~q~i~~sgesg----a-gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+| .+++| .|+..+.+.++-. +.|    . -..+.++.+++.+|.+++|.|+++||+..+..+.
T Consensus        17 ~~F~~~Dd~d~~G~~I~~~el~~~l~~-~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~~   86 (99)
T 1qls_A           17 AIFQKHAGRDGNNTKISKTEFLIFMNT-ELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLA   86 (99)
T ss_dssp             HHHHHHHTTSSCTTCBCHHHHHHHHTT-TSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcCeeCHHHHHHHHHH-HcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence            3888888 88888 8888888877631 111    1 1256799999999999999999999998876654

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=94.38  E-value=0.00076  Score=51.67  Aligned_cols=61  Identities=7%  Similarity=0.052  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhh---HHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTS---LKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~---~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|... .+.   ++.+++.++.+++|.+++ ||+..+...+
T Consensus        18 ~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~~~   82 (86)
T 1j7q_A           18 KIFDIFDRNAENIAPVSDTMDMLT--KLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSKWV   82 (86)
T ss_dssp             HHHHHHSTTTTSCBCHHHHHHHHH--HTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHHHH
Confidence            389999999999999988887772  223222 456   888999999999999999 9998887654

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=94.22  E-value=0.00035  Score=68.44  Aligned_cols=95  Identities=6%  Similarity=-0.059  Sum_probs=70.1

Q ss_pred             ccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHH-HHH
Q psy9090         221 YSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKH-LLK  299 (488)
Q Consensus       221 yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~-i~~  299 (488)
                      ...+..++..+|+++++.|.+.+|...+..   ...--.+|..+|.+++|.|+..+.+.++ .|..  -..+.++. +++
T Consensus       157 ~~~i~~l~~~~D~d~~G~I~f~ef~~l~~~---~~~l~~~F~~~D~d~dG~Is~~El~~~l-~g~~--~~~~ei~~~l~~  230 (323)
T 1ij5_A          157 EGPLKKLFVMVENDTKGRMSYITLVAVAND---LAALVADFRKIDTNSNGTLSRKEFREHF-VRLG--FDKKSVQDALFR  230 (323)
T ss_dssp             SSHHHHHHHHHHHCCSSTHHHHHHTTSHHH---HHTSCCCHHHHCTTCCSEECHHHHHHHH-HHTT--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCcHHHHHhhhhH---HHHHHHHHHHHCCCCCCcCcHHHHHHHH-cCCC--CCHHHHHHHHHH
Confidence            344556677778888888887777754311   1112238999999999999998888877 4431  12567889 999


Q ss_pred             HHHHhcCCCchhhhHhhhcchh
Q psy9090         300 HLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .++.+++|.++++||+..+...
T Consensus       231 ~~D~d~dG~Is~~EF~~~l~~~  252 (323)
T 1ij5_A          231 YADEDESDDVGFSEYVHLGLCL  252 (323)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHH
T ss_pred             HhcCCCCCEEeHHHHHHHHHHH
Confidence            9999999999999999988764

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=93.97  E-value=0.001  Score=62.58  Aligned_cols=94  Identities=15%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             CceeeeCCCCCCCCCCchhhhhccCCCCCC---------------CChhhHHHHHHHHHHHHhcCCCcEEEEc-ccc-cC
Q psy9090         226 DVLLFINPNTHLNLYGTKYHFKYKFKSRSD---------------NEPHIYAVADSAYQDMMHHEEAQHIVLA-GET-LA  288 (488)
Q Consensus       226 ~il~~Inp~~~~~i~~~ef~~~~~~~~~~~---------------~~ph~f~~~d~~~~~~~~~~~~q~i~~s-ges-ga  288 (488)
                      .++..+|+++++.|.+.||...+.......               .-..+|..+|.+.+|.|+..+.+.++-. |.+ |.
T Consensus       152 ~~~~~~D~~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~~~  231 (272)
T 2be4_A          152 AMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRP  231 (272)
T ss_dssp             HHHHHHCSSCSSEEEHHHHGGGSCCSSCSSTTSCCCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhccCCCCcCcHHHHHHHHhhhHHHHhhhhhhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHHcCC
Confidence            467778899999999999998775421100               0122899999999999999998877632 321 11


Q ss_pred             Cc-hhhHHH----HHHHHHHhcCCCchhhhHhhhcc
Q psy9090         289 GK-TTSLKH----LLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       289 gk-te~~k~----i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .. .+.++.    +++.+|.++||.++++||+..+.
T Consensus       232 ~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~~~~  267 (272)
T 2be4_A          232 SISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG  267 (272)
T ss_dssp             SCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence            12 344444    99999999999999999998764

>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A

Probab=93.89  E-value=0.0015  Score=53.80  Aligned_cols=58  Identities=7%  Similarity=-0.009  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +|..+|. .+|.|+..+.+.++  ..||- ..+.+..|++.+|.++||.++++||+.+|.-+
T Consensus        38 iF~~lD~-~dG~Isg~elr~~~--~~sgL-p~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li   95 (121)
T 3fia_A           38 QFHSLKP-ISGFITGDQARNFF--FQSGL-PQPVLAQIWALADMNNDGRMDQVEFSIAMKLI   95 (121)
T ss_dssp             HHHHTCC-BTTBEEHHHHHHHH--GGGCC-CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             HHHHhCC-CCCeECHHHHHHHH--HHcCC-CHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            7888887 67888888877777  23432 26779999999999999999999999988654

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=93.78  E-value=0.00082  Score=53.66  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.++.+++|.++++||+..+..
T Consensus        28 ~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~~   88 (105)
T 1wlz_A           28 QEFENFDTMKTNTISREEFRAICN--RRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSS   88 (105)
T ss_dssp             HHHHHHCTTCSSCBCHHHHHHHHH--HHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC-
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHHH--HhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHhc
Confidence            488888888888888888877662  22222 2567899999999999999999999988764

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=93.77  E-value=0.0011  Score=56.73  Aligned_cols=60  Identities=8%  Similarity=0.019  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.+++.++.+++|.++++||+..+..
T Consensus        52 ~~F~~~D~d~dG~I~~~El~~~l--~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~~  112 (147)
T 1wy9_A           52 VKYMEFDLNGNGDIDIMSLKRML--EKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG  112 (147)
T ss_dssp             HHHTTSCCCTTSSEEHHHHHHHH--HHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHCS
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            37777788888887777777666  222322 2567899999999999999999999988764

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=93.64  E-value=0.00083  Score=54.02  Aligned_cols=59  Identities=10%  Similarity=-0.000  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+..
T Consensus        37 ~F~~~D~d~~G~I~~~el~~~l--~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~~~   96 (107)
T 2d58_A           37 KYMEFDLNGNGDIDIMSLKRML--EKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLG   96 (107)
T ss_dssp             HHTTSCCCTTSCEEHHHHHHHH--HHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHSS
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            7777888888887777777666  2223222 567899999999999999999999987754

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=93.56  E-value=0.0011  Score=62.04  Aligned_cols=98  Identities=10%  Similarity=-0.012  Sum_probs=68.4

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCC--------CCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc-cc-ccC
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKS--------RSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA-GE-TLA  288 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~--------~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s-ge-sga  288 (488)
                      .+..++..+|.++++.|.+.||...+....        ....+.    .+|..+|.+.+|.|+..+.+.++-+ +. .|.
T Consensus        59 ~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~  138 (263)
T 2f33_A           59 EMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANK  138 (263)
T ss_dssp             HHHHHHHHHTTGGGCCBCHHHHHHHTTSCTTHHHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHhhhhhHHHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCC
Confidence            344556677888889999999998765431        111111    2899999999999999888877632 10 032


Q ss_pred             Cc-hhhHHH----HHHHHHHhcCCCchhhhHhhhcch
Q psy9090         289 GK-TTSLKH----LLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       289 gk-te~~k~----i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .. .+.++.    +++.++.+++|.++++||+..+..
T Consensus       139 ~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~~~~  175 (263)
T 2f33_A          139 TVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPV  175 (263)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHHHHSCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHHH
Confidence            22 333444    899999999999999999988764

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=93.51  E-value=0.00081  Score=50.23  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             hhHHHHHH-HHHH-HHhcCCCcEEEE--cccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADS-AYQD-MMHHEEAQHIVL--AGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~-~~~~-~~~~~~~q~i~~--sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|. +.+| .|+..+.+.++-  .|.. .+..+.++.+++.++.+++|.++++||+..+..+
T Consensus        11 ~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~-~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   76 (78)
T 1cb1_A           11 SIFEKYAAKEGDPNQLSKEELKQLIQAEFPSL-LKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI   76 (78)
T ss_dssp             HHHHHHHTTSSSTTEECHHHHHHHHHHHCSSC-CSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcCEeCHHHHHHHHHHHhhhh-cccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Confidence            48999999 9999 999888887762  1321 1145668899999999999999999999877543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=93.45  E-value=0.094  Score=50.38  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=25.5

Q ss_pred             CCeecccCCCCEEEcc---CCc-EEEEecCCcccc
Q psy9090          24 HVIHRDLRGSNVLLTK---DGE-VKIVDFGLSRET   54 (488)
Q Consensus        24 givHrDlkp~NILl~~---~~~-vkL~Dfg~a~~~   54 (488)
                      .++|+|++|.||+++.   ++. +.|+||+.+...
T Consensus       191 ~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          191 RLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             EEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             eeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence            4699999999999987   455 489999987643

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=93.17  E-value=0.0014  Score=71.73  Aligned_cols=89  Identities=7%  Similarity=0.010  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEc--ccccC-------CchhhHHHHHHHHH
Q psy9090         232 NPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLA--GETLA-------GKTTSLKHLLKHLI  302 (488)
Q Consensus       232 np~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~s--gesga-------gkte~~k~i~~~~~  302 (488)
                      |.++.+.|+++||+..|......+.--.+|..+|++..|.|+..+++.+|..  ||...       -..+.++.||+.++
T Consensus       196 D~d~~g~idf~EF~~~~~~l~~r~el~~aF~~fD~d~~g~Is~~eL~~fL~~~Qge~~~~~~~~~~~t~ee~~~iI~~~d  275 (799)
T 2zkm_X          196 DAINPEDFPEPVYKSFLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYE  275 (799)
T ss_dssp             CEECGGGCCHHHHHHHHHHHSCCHHHHTTCC--------CCCHHHHHHHHHHTCC---------------CHHHHHHHHC
T ss_pred             ccCCCCcCCHHHHHHHHHHccCHHHHHHHHHHhccCCCCeEcHHHHHHHHHHhcCCcccccccccCCCHHHHHHHHHHhh
Confidence            3456678999999998865432111123999999999999999998888853  55321       23577999999999


Q ss_pred             Hh----cCCCchhhhHhhhcch
Q psy9090         303 FL----GQGAAKVGEKIEKCVN  320 (488)
Q Consensus       303 ~~----~~g~~~~~e~i~~~~~  320 (488)
                      .+    ++|.++++||+.+|..
T Consensus       276 ~d~~~~~dg~is~eeF~~~L~S  297 (799)
T 2zkm_X          276 PSGINAQRGQLSPEGMVWFLCG  297 (799)
T ss_dssp             CC--------CCHHHHHHHHHS
T ss_pred             cccccccCCccchhhhhhcccC
Confidence            87    8899999999998853

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=93.04  E-value=0.0016  Score=72.46  Aligned_cols=90  Identities=6%  Similarity=0.005  Sum_probs=69.4

Q ss_pred             ccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCC-Ch---hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHH
Q psy9090         221 YSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDN-EP---HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKH  296 (488)
Q Consensus       221 yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~-~p---h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~  296 (488)
                      ...+..++..+|+++++.|++.||+..+........ ..   .+|+.+ .+++|+|+..+.+.++        +.+.+..
T Consensus       760 ~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~l~~aF~~~-~d~~G~Is~~El~~~l--------~~~~~~~  830 (863)
T 1sjj_A          760 EAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKIL-AGDKNYITVDELRREL--------PPDQAEY  830 (863)
T ss_dssp             THHHHHHHHHHCTTSCSEEETTHHHHTHHHHSTTCSSSHHHHHHHHGG-GTSSSEEEHHHHHHHS--------CHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hCCCCcCcHHHHHHHC--------CHHHHHH
Confidence            345566778889999999999999987754322111 22   288888 7888888888888777        2577999


Q ss_pred             HHHHHHHh-----cCCCchhhhHhhhcc
Q psy9090         297 LLKHLIFL-----GQGAAKVGEKIEKCV  319 (488)
Q Consensus       297 i~~~~~~~-----~~g~~~~~e~i~~~~  319 (488)
                      |++.++.+     +||.++|+||+.+|.
T Consensus       831 l~~~~d~~~~~~~~dg~I~~~eF~~~~~  858 (863)
T 1sjj_A          831 CIARMAPYNGRDAVPGALDYMSFSTALY  858 (863)
T ss_dssp             HHHHSEECCSSCCCTTEEESHHHHHHHS
T ss_pred             HHHHcchhcCCCCCCCceeHHHHHHHHh
Confidence            99999987     689999999998874

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=93.02  E-value=0.0029  Score=53.42  Aligned_cols=61  Identities=11%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.|++.++.+++|.++++||+..+...
T Consensus        10 ~~F~~~D~d~~G~I~~~el~~~l--~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~   71 (143)
T 2obh_A           10 EAFDLFDADGTGTIDVKELKVAM--RALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQK   71 (143)
T ss_dssp             HHHHTTCTTCCSEEEGGGHHHHH--HHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHH
Confidence            48889999999999999888776  222322 25678999999999999999999999887554

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=92.91  E-value=0.019  Score=61.08  Aligned_cols=60  Identities=8%  Similarity=-0.020  Sum_probs=6.0

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|++.+|.|+.++.+.++-+  -|.. ..+.++.|++.+|.+++|.++++||+..+..
T Consensus        15 ~~F~~fD~d~dG~Is~~El~~~l~~--lg~~~s~~el~~lf~~~D~d~~G~I~f~EF~~~~~~   75 (624)
T 1djx_A           15 SCLRKADKNKDNKMNFKELKDFLKE--LNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKM   75 (624)
T ss_dssp             -------------------------------------------------------CTTHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHHH--cCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            3888889999999999988888743  2211 2466888899999999999999998877654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=92.91  E-value=0.057  Score=54.42  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=28.3

Q ss_pred             HHCCCeecccCCCCEEEccCCcEEEEecCCcccc
Q psy9090          21 HENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET   54 (488)
Q Consensus        21 H~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~   54 (488)
                      +...++|+|++|.|||++.++ +.++||+.+...
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            456799999999999998776 999999987653

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=92.79  E-value=0.0037  Score=55.81  Aligned_cols=57  Identities=16%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|...++.++.+++.+|.+++|.++++||+..+
T Consensus        57 ~F~~~D~d~~G~i~~~El~~~l--~~~g~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~  113 (191)
T 3k21_A           57 TFLVLDEDGKGYITKEQLKKGL--EKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAA  113 (191)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHH--HHTTCCCCTTHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred             HHHHHCCCCCCCCcHHHHHHHH--HHcCCCcHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            5555555555555555554444  22222224567777777777777777777777665

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=92.40  E-value=0.002  Score=60.57  Aligned_cols=93  Identities=9%  Similarity=-0.028  Sum_probs=64.9

Q ss_pred             eeeeCCCCCCCCCCchhhhhccC-----------CCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-c-cccCCc-
Q psy9090         228 LLFINPNTHLNLYGTKYHFKYKF-----------KSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA-G-ETLAGK-  290 (488)
Q Consensus       228 l~~Inp~~~~~i~~~ef~~~~~~-----------~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-g-esgagk-  290 (488)
                      +..+|.++++.|.+.||...+..           .......   ..+|..+|.+.+|.|+..+.+.++-. + ..|... 
T Consensus        63 f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~  142 (272)
T 2be4_A           63 MSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIP  142 (272)
T ss_dssp             SCHHHHTCCSEEEHHHHHHHHSCHHHHHHHHHHHHSCCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCC
T ss_pred             HHHhcCCCCCcEeHHHHHHHHhhhhHHHHHHHhhccCcccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCC
Confidence            45667788888999999987432           1111111   12999999999999999998877732 0 013222 


Q ss_pred             hhh----HHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         291 TTS----LKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       291 te~----~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+.    ++.+++.++.+++|.++++||+..+..
T Consensus       143 ~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~  176 (272)
T 2be4_A          143 PNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL  176 (272)
T ss_dssp             HHHHHHHHHHHHHHHCSSCSSEEEHHHHGGGSCC
T ss_pred             HHHHHHHHHHHHHHhccCCCCcCcHHHHHHHHhh
Confidence            223    355999999999999999999988753

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=92.11  E-value=0.014  Score=49.07  Aligned_cols=62  Identities=8%  Similarity=0.013  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+.+.+
T Consensus        15 ~~F~~~D~d~~G~i~~~el~~~l--~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~   77 (153)
T 3ox6_A           15 EAFREFDKDKDGYINCRDLGNCM--RTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKL   77 (153)
T ss_dssp             HHHHHHHHHCSSSCCHHHHHHHH--HHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHh
Confidence            38999999999999998888766  3333323 56788999999999999999999999886654

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=91.95  E-value=0.051  Score=45.93  Aligned_cols=66  Identities=9%  Similarity=-0.084  Sum_probs=27.0

Q ss_pred             CChhhHHHHHHHHHHHHhcCCCcEEEEcc--c--ccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         256 NEPHIYAVADSAYQDMMHHEEAQHIVLAG--E--TLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       256 ~~ph~f~~~d~~~~~~~~~~~~q~i~~sg--e--sgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+++.|..+|.+.+|.|+..+...++..-  +  +.....+.++.+++.+|.+++|.|+.+|+...+..+
T Consensus        28 ~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~   97 (143)
T 3a4u_B           28 ASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHV   97 (143)
T ss_dssp             -----------------------------------CCCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC--
T ss_pred             CCHHHHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHH
Confidence            35679999999999999999998776421  1  111235678899999999999999999999877654

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=91.92  E-value=0.011  Score=54.21  Aligned_cols=59  Identities=7%  Similarity=-0.109  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+.+|.|+..+.+.++-+  .|... .+.++.+++.+|.+++|.++++||+..+..
T Consensus        56 ~F~~~D~d~~G~I~~~El~~~l~~--~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~  115 (220)
T 3sjs_A           56 WFMGVDRDRSGTLEINELMMGQFP--GGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKF  115 (220)
T ss_dssp             HHHHHCTTCCSSBCHHHHHHCCBG--GGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHHH--cCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            788888888888888887777632  23222 567888999999999999999999887765

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=91.14  E-value=0.013  Score=49.64  Aligned_cols=59  Identities=10%  Similarity=0.034  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+++|.|+..+.+.++-  ..|.. ..+.+..++..++.+++|.+++.||+..+..
T Consensus        15 ~F~~~D~d~~G~I~~~El~~~l~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~   74 (148)
T 2lmt_A           15 AFVQFDKEGTGKIATRELGTLMR--TLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAK   74 (148)
T ss_dssp             HHHHHHCSSCCEEEGGGHHHHHH--HHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHHH
T ss_pred             HHHHHcCCCCCeECHHHHHHHHH--hcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHH
Confidence            78888888888888888876652  22222 2566788888888888888888888876644

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=90.70  E-value=0.013  Score=49.91  Aligned_cols=61  Identities=10%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             hHHHHHHHH-HHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAY-QDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~-~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.++ +|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        23 ~F~~~D~~~~~G~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~~   85 (161)
T 1dtl_A           23 AFDIFVLGAEDGSISTKELGKVM--RMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSM   85 (161)
T ss_dssp             HHHHHTTTCGGGSBCHHHHHHHH--HHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHh
Confidence            888889888 8888888887766  2233322 56789999999999999999999999887664

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=90.57  E-value=0.0054  Score=53.86  Aligned_cols=91  Identities=8%  Similarity=0.047  Sum_probs=63.6

Q ss_pred             CCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~  309 (488)
                      +++.|...||...+........+    ..+|+.+|.+++|.|+..+...++.. +.  ....+.++.+++.+|.+++|.+
T Consensus        32 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~--~~~~~~~~~~f~~~D~d~~G~i  109 (183)
T 1s6c_A           32 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR--GTVHEKLRWTFNLYDINKDGYI  109 (183)
T ss_dssp             TTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH--CCHHHHHHHHHHHHCTTCSSCE
T ss_pred             CCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcC--CCHHHHHHHHHHHhCCCCCCeE
Confidence            45667788888766533221112    23889999988888877776655521 11  1135778999999999999999


Q ss_pred             hhhhHhhhcchhhhhhhc
Q psy9090         310 KVGEKIEKCVNVIHAIGN  327 (488)
Q Consensus       310 ~~~e~i~~~~~~leafgn  327 (488)
                      +++||...+..+.+..|.
T Consensus       110 ~~~e~~~~~~~~~~~~g~  127 (183)
T 1s6c_A          110 NKEEMMDIVKAIYDMMGK  127 (183)
T ss_dssp             EHHHHHHHHHHHHHHTC-
T ss_pred             cHHHHHHHHHHHHHHhcc
Confidence            999999998887766553

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=90.48  E-value=0.0085  Score=50.66  Aligned_cols=61  Identities=11%  Similarity=0.143  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.++.+++|.++++||+..+...
T Consensus        14 ~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~   75 (148)
T 1exr_A           14 EAFALFDKDGDGTITTKELGTVMR--SLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK   75 (148)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHHH--HHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHHH--HcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhc
Confidence            388888988888888888776662  22322 25678899999999999999999999877543

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=90.48  E-value=0.021  Score=49.15  Aligned_cols=62  Identities=15%  Similarity=0.023  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEc-cccc--CC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLA-GETL--AG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~s-gesg--ag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++-+ |..+  .. ..+.++.+++.++.+++|.++++||+..+..
T Consensus         3 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~   68 (165)
T 1k94_A            3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA   68 (165)
T ss_dssp             HHHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            4799999999999999999887733 3211  01 2577899999999999999999999987765

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=90.39  E-value=0.0062  Score=55.87  Aligned_cols=98  Identities=10%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             eeeeCCC--CCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHH
Q psy9090         228 LLFINPN--THLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       228 l~~Inp~--~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      +..+|.+  +++.|...|+..+.... ......   .+|+.+|.+.+|.|+..+-..++..-.......+.++.+++.+|
T Consensus        54 F~~~D~d~~~~G~I~~~El~~~l~~~-~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D  132 (226)
T 2zfd_A           54 FKKISSAVIDDGLINKEEFQLALFKT-NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYD  132 (226)
T ss_dssp             HHHHHTSSSCSSSBCHHHHHHHHHSC-SSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHHC
T ss_pred             HHHhCcccCCCCeEcHHHHHHHHhcc-CcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHccCCCHHHHHHHHHHHhC
Confidence            4456666  88889999998776542 112222   28899998888877776665444211111223667999999999


Q ss_pred             HhcCCCchhhhHhhhcchhhhhhh
Q psy9090         303 FLGQGAAKVGEKIEKCVNVIHAIG  326 (488)
Q Consensus       303 ~~~~g~~~~~e~i~~~~~~leafg  326 (488)
                      .+++|.|+.+|+...+..++...|
T Consensus       133 ~d~~G~Is~~E~~~~l~~~~~~~g  156 (226)
T 2zfd_A          133 LKQQGFIERQEVKQMVVATLAESG  156 (226)
T ss_dssp             TTSSSSEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCCcccHHHHHHHHHHHHHHcC
Confidence            999999999999998887766655

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=90.25  E-value=0.0022  Score=56.78  Aligned_cols=95  Identities=13%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             eCCC-CCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHh
Q psy9090         231 INPN-THLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFL  304 (488)
Q Consensus       231 Inp~-~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~  304 (488)
                      .|.+ +++.|...||...+........+.    .+|+.+|.+.+|.|+..+...++.  ..|.+ ..+.++.+++.+|.+
T Consensus        34 ~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~--~~~~~~~~~~~~~~f~~~D~d  111 (190)
T 2l2e_A           34 FFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALS--VTSRGELNDKLIWAFQLYDLD  111 (190)
T ss_dssp             HHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTCEEHHHHHHHHT--TSSCSCSHHHHHHHHHHHCTT
T ss_pred             HHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCeEeHHHHHHHHH--HHcCCCHHHHHHHHHhHccCC
Confidence            3444 466778888887665332111111    289999999888888777765552  22222 257789999999999


Q ss_pred             cCCCchhhhHhhhcchhhhhhhc
Q psy9090         305 GQGAAKVGEKIEKCVNVIHAIGN  327 (488)
Q Consensus       305 ~~g~~~~~e~i~~~~~~leafgn  327 (488)
                      ++|.|+++||...+..+....|.
T Consensus       112 ~~G~i~~~e~~~~~~~~~~~~g~  134 (190)
T 2l2e_A          112 NNGLISYDEMLRIVDAIYKMVGS  134 (190)
T ss_dssp             SCSCBCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHHHHhcc
Confidence            99999999999988877665564

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=90.10  E-value=0.0092  Score=53.63  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             eeeeCCC--CCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHH
Q psy9090         228 LLFINPN--THLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       228 l~~Inp~--~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      +..+|.+  +++.|...||....... .....   .++|+.+|.+.+|.|+..+-..++..-.......+.++.+++.+|
T Consensus        43 F~~~D~d~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D  121 (207)
T 2ehb_A           43 FKKLSSSIIDDGLIHKEEFQLALFRN-RNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYD  121 (207)
T ss_dssp             HHHHTTSSSCSSCEEHHHHHHHHHSC-TTCCCHHHHHHHHHHCTTCSSEECHHHHHHHHGGGSTTSCHHHHHHHHHHHHC
T ss_pred             HHHhccccCCCCccCHHHHHHHHhcc-ccccHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHccCCCHHHHHHHHHHHhC
Confidence            4456666  78888888988776542 11222   238889998888877766655444211111123567999999999


Q ss_pred             HhcCCCchhhhHhhhcchhhhhhh
Q psy9090         303 FLGQGAAKVGEKIEKCVNVIHAIG  326 (488)
Q Consensus       303 ~~~~g~~~~~e~i~~~~~~leafg  326 (488)
                      .+++|.|+.+|+...+..++...|
T Consensus       122 ~d~~G~I~~~E~~~~l~~~~~~~g  145 (207)
T 2ehb_A          122 LRQTGFIEREELKEMVVALLHESE  145 (207)
T ss_dssp             TTCCSSEEHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcCcHHHHHHHHHHHHHHcc
Confidence            999999999999988877665544

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=89.85  E-value=0.011  Score=59.10  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +|..+|.+.+|.|+..+++.++-  .-|..- .+.++.|++.+|.+++|.|+|+||+..+.
T Consensus       307 aF~~fDkDgdG~IS~eELk~aLr--sLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lms  365 (440)
T 3u0k_A          307 AFSLFDKDGDGTITTKELGTVMR--SLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMA  365 (440)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHHH--HTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHH
T ss_pred             HHHHHcCCCCCEECHHHHHHHHH--HcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            99999999999999999988773  223222 56799999999999999999999998764

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=89.80  E-value=0.024  Score=49.20  Aligned_cols=61  Identities=11%  Similarity=0.003  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEc--ccc----cCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLA--GET----LAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~s--ges----gagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+| +.+|.|+..+.+.++-+  |..    +.+- .+.++.+++.++.+++|.++++||+..+..
T Consensus         8 ~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~   75 (173)
T 1alv_A            8 RLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN   75 (173)
T ss_dssp             HHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHH
Confidence            4888999 99999998888877733  310    0222 567899999999999999999999987764

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=89.80  E-value=0.0098  Score=52.26  Aligned_cols=59  Identities=14%  Similarity=0.109  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         262 AVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       262 ~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +++|.+.+|.|+..+.+.++.. |+  .-..+.++.+++.+|.+++|.|+++||+..+....
T Consensus       109 ~~fD~d~~G~I~~~E~~~~l~~~g~--~~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~  168 (186)
T 2hps_A          109 DCIDTDKDGYVSLPEFKAFLQAVGP--DLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFL  168 (186)
T ss_dssp             HHHCTTCSSEEEHHHHHHHHHHHCT--TCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHH
T ss_pred             HHccCCCCCcCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHh
Confidence            8889999998888888877632 32  11367799999999999999999999999887654

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=89.73  E-value=0.013  Score=53.72  Aligned_cols=92  Identities=8%  Similarity=0.039  Sum_probs=65.4

Q ss_pred             CCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~  309 (488)
                      +++.|...||...+........+    ..+|+.+|.+.+|.|+..+...++.. +.  ....+.++.+++.+|.+++|.|
T Consensus        65 ~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~--~~~~~~l~~~F~~~D~d~dG~I  142 (224)
T 1s1e_A           65 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR--GTVHEKLRWTFNLYDINKDGYI  142 (224)
T ss_dssp             TTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHH--CCHHHHHHHHHHHHCTTCCSEE
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCcEeHHHHHHHHHHHcc--CCHHHHHHHHHHHHcCCCCCeE
Confidence            45678888888777644322122    22889999988888777776655421 11  1135678999999999999999


Q ss_pred             hhhhHhhhcchhhhhhhcc
Q psy9090         310 KVGEKIEKCVNVIHAIGNA  328 (488)
Q Consensus       310 ~~~e~i~~~~~~leafgna  328 (488)
                      +++||...+..+.+..|..
T Consensus       143 s~~E~~~~l~~~~~~~g~~  161 (224)
T 1s1e_A          143 NKEEMMDIVKAIYDMMGKY  161 (224)
T ss_dssp             CHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhccc
Confidence            9999999888877666643

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=89.71  E-value=0.011  Score=50.02  Aligned_cols=93  Identities=10%  Similarity=0.004  Sum_probs=61.2

Q ss_pred             ceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC
Q psy9090         227 VLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ  306 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~  306 (488)
                      ++..+|.++++.|...|+ ..+........-..+|+.+|.+..|.|+..+-..++..-.......+.++.+.+.+|.+++
T Consensus        11 ~F~~~D~d~~G~i~~~el-~~l~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~   89 (155)
T 3ll8_B           11 RFKKLDLDNSGSLSVEEF-MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKD   89 (155)
T ss_dssp             HHHHHCTTCSSSBCHHHH-TTSGGGTTCTTHHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHHHHHHHCTTCS
T ss_pred             HHHHhCcCCCCeEcHHHH-HHhhccccchHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHHHHHHhCCCCC
Confidence            345567888888888888 4443322212223488888888777666665544442111111235788999999999999


Q ss_pred             CCchhhhHhhhcch
Q psy9090         307 GAAKVGEKIEKCVN  320 (488)
Q Consensus       307 g~~~~~e~i~~~~~  320 (488)
                      |.++.+|+...+..
T Consensus        90 G~i~~~e~~~~l~~  103 (155)
T 3ll8_B           90 GYISNGELFQVLKM  103 (155)
T ss_dssp             SCBCHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHH
Confidence            99999999877655

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=89.68  E-value=0.0092  Score=49.78  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+...++-  ..|... .+.++.+++.++.+++|.++++||+..+...
T Consensus        10 ~~F~~~D~d~~G~i~~~el~~~l~--~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~   71 (142)
T 2bl0_C           10 EAFELFDSERTGFITKEGLQTVLK--QFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRR   71 (142)
T ss_dssp             HHHHHHCTTCSSEEEHHHHHHHHH--HHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHH--HhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHHH
Confidence            378888888888888877776652  233333 5668999999999999999999999988764

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=89.65  E-value=0.0092  Score=55.94  Aligned_cols=91  Identities=7%  Similarity=0.039  Sum_probs=67.1

Q ss_pred             CceeeeCCCCCCCCCCchhhhhccCCCCCCCChh---hHHHHHHHHHHHHhcCCCcEEEE--------cccccC-C---c
Q psy9090         226 DVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPH---IYAVADSAYQDMMHHEEAQHIVL--------AGETLA-G---K  290 (488)
Q Consensus       226 ~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph---~f~~~d~~~~~~~~~~~~q~i~~--------sgesga-g---k  290 (488)
                      -++..-|+++++.|.+.||+.+..--.+....+.   +|++.| |.+|+|+.++.-.|+-        -||+-+ |   -
T Consensus       136 ~lf~~FD~~~~G~I~f~ef~~aLs~l~rG~leeKL~w~F~lyD-D~~G~I~~~El~~il~~i~~i~~~vge~~~~~~~~~  214 (261)
T 1eg3_A          136 WLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNI  214 (261)
T ss_dssp             HHHHHHCTTCCSEEEHHHHHHHHHHTSSSCHHHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCC
T ss_pred             HHHHHccCCCCceEeHHHHHHHHHHHcCCCHHHHHHHHHheee-CCCCCCcHHHHHHHHHHHHHHHHhcCCcccCCCCCH
Confidence            3566778999999999999987755444443343   999999 9999999988777662        255422 2   2


Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+.++.+.+.++  +||.++.+||+..+.
T Consensus       215 e~~v~~~F~~~d--~dg~It~~EFl~~~~  241 (261)
T 1eg3_A          215 EPSVRSCFQFAN--NKPEIEAALFLDWMR  241 (261)
T ss_dssp             HHHHHHHHHHTT--TCSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CCCcCCHHHHHHHHH
Confidence            556777887774  899999999997654

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=89.55  E-value=0.013  Score=59.60  Aligned_cols=61  Identities=10%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.+|.+++|.++++||+..+..++
T Consensus       317 ~F~~fD~D~dG~Is~~EL~~~L--~~lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~~~~  378 (450)
T 3sg6_A          317 AFSLFDKDGDGTITTKELGTVM--RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM  378 (450)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHH--HHTTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHHC--
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH--HHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhhc
Confidence            8999999999999999998877  3333333 67799999999999999999999998876543

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=89.47  E-value=0.013  Score=49.94  Aligned_cols=61  Identities=10%  Similarity=0.008  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        28 ~F~~~D~~~~G~i~~~e~~~~l--~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~   89 (161)
T 3fwb_A           28 AFSLFDMNNDGFLDYHELKVAM--KALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKI   89 (161)
T ss_dssp             HHHHHCTTSSSEECHHHHHHHH--HHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHH
Confidence            8888888888888888877766  3334333 57799999999999999999999998887543

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=89.42  E-value=0.012  Score=50.80  Aligned_cols=61  Identities=10%  Similarity=0.109  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        33 ~F~~~D~d~~G~i~~~el~~~l--~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~   94 (169)
T 3qrx_A           33 AFDLFDTDGSGTIDAKELKVAM--RALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKM   94 (169)
T ss_dssp             HHHHHCTTCCSEECHHHHHHHH--HHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHh
Confidence            8888888888888888877666  2333333 57789999999999999999999999887655

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=89.25  E-value=0.019  Score=50.92  Aligned_cols=60  Identities=10%  Similarity=-0.016  Sum_probs=47.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++.  ..|.. ..+.++.+++.+|.+++|.++++||+..+..
T Consensus        31 ~~F~~~D~d~~G~I~~~El~~~l~--~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~   91 (191)
T 1y1x_A           31 EWFRAVDTDGSGAISVPELNAALS--SAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF   91 (191)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHC--BTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcCcHHHHHHHHH--HcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            489999999999998888887772  12221 2677889999999999999999999987754

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=89.14  E-value=0.015  Score=51.83  Aligned_cols=59  Identities=8%  Similarity=0.040  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|.. ..+.++.+++.+|.+++|.++++||+..+.
T Consensus        41 ~~F~~~D~d~~G~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~  100 (204)
T 3e3r_A           41 RFFRQLDRDGSRSLDADEFRQGL--AKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALR  100 (204)
T ss_dssp             HHHHHHCTTCCSSBCHHHHHHHH--HTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHTS
T ss_pred             HHHHHHccCCCCCcCHHHHHHHH--HHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence            36666666666666665555544  112211 245677788888888888888888887664

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=89.11  E-value=0.15  Score=48.93  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=25.5

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      .+++|+|++|.|||++.++.+.++||+.+.
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            369999999999999876656899998764

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=88.84  E-value=0.01  Score=53.36  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=63.3

Q ss_pred             CCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~  309 (488)
                      +.+.|...||...+........++    .+|+.+|.+..|.|+..+...++..  -|.+ ..+.++.+++.+|.+++|.|
T Consensus        47 ~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~--~~~~~~~~~~~~~f~~~D~d~~G~I  124 (207)
T 2d8n_A           47 PTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHM--TTAGKTNQKLEWAFSLYDVDGNGTI  124 (207)
T ss_dssp             TTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHH--HSCSSSSTTHHHHHHHHCTTCSSEE
T ss_pred             CCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCCeEeHHHHHHHHHH--HcCCCHHHHHHHHHHHhcCCCCCeE
Confidence            456677888887765432211122    2889999988888877776655522  1111 25679999999999999999


Q ss_pred             hhhhHhhhcchhhhhhh
Q psy9090         310 KVGEKIEKCVNVIHAIG  326 (488)
Q Consensus       310 ~~~e~i~~~~~~leafg  326 (488)
                      +++||+..+..+....|
T Consensus       125 ~~~E~~~~l~~~~~~~g  141 (207)
T 2d8n_A          125 SKNEVLEIVMAIFKMIT  141 (207)
T ss_dssp             CHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHhc
Confidence            99999998877655444

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=88.62  E-value=0.013  Score=48.90  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIH  323 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~le  323 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+.
T Consensus        16 ~F~~~D~~~~G~i~~~e~~~~l--~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~   78 (147)
T 4ds7_A           16 AFALFDKDNSGSISASELATVM--RSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLK   78 (147)
T ss_dssp             HHHHHCTTCSSEEEHHHHHHHH--HHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCcCHHHHHHHH--HHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhcc
Confidence            8888888888888888877666  2233333 567899999999999999999999998876543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=88.59  E-value=0.18  Score=46.99  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=24.7

Q ss_pred             CeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          25 VIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        25 ivHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ++|+|+.|.||+++..+.+-|+||+.+.
T Consensus       195 l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          195 VTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEcCCCCCCeEEEECCeEEEEEECcccc
Confidence            8999999999999987767799998764

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=88.48  E-value=0.0089  Score=66.75  Aligned_cols=98  Identities=9%  Similarity=0.075  Sum_probs=55.3

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLI  302 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~  302 (488)
                      +..++..+|.++++.|.+.||...+....   .-..+|..+|++.+|.|+..|...++-  ..|.. ..+.++.|++.++
T Consensus       776 ~~~l~~~~D~d~dG~Is~~EF~~l~~~~~---~l~~~F~~~D~d~dG~Is~~El~~~l~--~~g~~ls~~~~~~l~~~~d  850 (900)
T 1qxp_A          776 CRSMVAVMDSDTTGKLGFEEFKYLWNNIK---KWQGIYKRFETDRSGTIGSNELPGAFE--AAGFHLNQHIYSMIIRRYS  850 (900)
T ss_dssp             HHHHHHHHCCSSSSSBCSHHHHHHHHHHH---HHSSCC----CCSCC-------CCTTG--GGTCCCCSCCCC-------
T ss_pred             HHHHHHHHCCCCCCeECHHHHHHHHHHHH---HHHHHHHHhCCCCCCccCHHHHHHHHH--hcCCCCCHHHHHHHHHHhc
Confidence            34456678889999999999987764321   112489999999999999999998883  22311 2567788999999


Q ss_pred             HhcCCCchhhhHhhhcch---hhhhhhc
Q psy9090         303 FLGQGAAKVGEKIEKCVN---VIHAIGN  327 (488)
Q Consensus       303 ~~~~g~~~~~e~i~~~~~---~leafgn  327 (488)
                       +++|.++++||+..+..   +.++|-.
T Consensus       851 -d~dg~Is~~EF~~~~~~l~~~~~~F~~  877 (900)
T 1qxp_A          851 -DETGNMDFDNFISCLVRLDAMFRAFRS  877 (900)
T ss_dssp             --CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCeECHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999988765   3455543

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=88.41  E-value=0.016  Score=51.17  Aligned_cols=90  Identities=16%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             CCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~  309 (488)
                      +++.|...||...+........+    ..+|..+|.+.+|.|+..+...++.  ..+.+. .+.++.+++.+|.+++|.|
T Consensus        39 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~--~~~~~~~~~~~~~~f~~~D~d~~G~I  116 (193)
T 1bjf_A           39 PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS--VTSRGKLEQKLKWAFSMYDLDGNGYI  116 (193)
T ss_dssp             TTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHHHHHH--HHTSSCHHHHHHHHHHHHCTTCSSCE
T ss_pred             CCCCcCHHHHHHHHHHhcCcCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HHcCCCHHHHHHHHHhhcCCCCCCeE
Confidence            44667777887766543221212    2388888888888777777655441  112223 5678899999999999999


Q ss_pred             hhhhHhhhcchhhhhhh
Q psy9090         310 KVGEKIEKCVNVIHAIG  326 (488)
Q Consensus       310 ~~~e~i~~~~~~leafg  326 (488)
                      +++||...+..+....|
T Consensus       117 ~~~E~~~~~~~~~~~~g  133 (193)
T 1bjf_A          117 SKAEMLEIVQAIYKMVS  133 (193)
T ss_dssp             EHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999998877665555

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=88.28  E-value=0.0051  Score=68.71  Aligned_cols=98  Identities=7%  Similarity=-0.000  Sum_probs=71.6

Q ss_pred             CCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHH
Q psy9090         225 GDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIF  303 (488)
Q Consensus       225 ~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~  303 (488)
                      ..++..+|.++++.|.+.||+..+...   ..-..+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.++ 
T Consensus       580 ~~l~~~~D~d~~G~I~~~EF~~~~~~~---~~l~~~F~~~D~d~~G~Is~~El~~~l~--~~g~~l~~~~~~~l~~~~d-  653 (900)
T 1qxp_A          580 RSMVNLMDRDGNGKLGLVEFNILWNRI---RNYLTIFRKFDLDKSGSMSAYEMRMAIE--AAGFKLPCQLHQVIVARFA-  653 (900)
T ss_dssp             HHHHHHHCC--CCCCCSSSHHHHHHHH---HHHHHHHGGGCTTCCSCCBHHHHHHHHH--HTTEECCHHHHHHHHHHTS-
T ss_pred             HHHHHHhCCCCCCcCCHHHHHHHHHHH---HHHHHHHHhhCCCCCCeECHHHHHHHHH--HhCCCCCHHHHHHHHHHhC-
Confidence            344556788888899999999776543   1123499999999999999999887772  22211 2677899999999 


Q ss_pred             hcCCCchhhhHhhhcch---hhhhhhcc
Q psy9090         304 LGQGAAKVGEKIEKCVN---VIHAIGNA  328 (488)
Q Consensus       304 ~~~g~~~~~e~i~~~~~---~leafgna  328 (488)
                      +++|.++++||+..+..   +.++|-..
T Consensus       654 d~dg~I~~~eF~~~~~~~~~l~~~F~~~  681 (900)
T 1qxp_A          654 DDELIIDFDNFVRCLVRLEILFKIFKQL  681 (900)
T ss_dssp             CSSSBCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCeEcHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999988764   56677554

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=88.21  E-value=0.56  Score=44.57  Aligned_cols=29  Identities=28%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             CCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090          24 HVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus        24 givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      .++|+|+.|.||+ ..++.+.++||..+..
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            3899999999999 5667889999987753

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=88.18  E-value=0.02  Score=49.84  Aligned_cols=61  Identities=10%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        16 ~F~~~D~d~~G~i~~~e~~~~l--~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~~~   77 (179)
T 2f2o_A           16 AFSLFDKDGDGTITTKELGTVM--RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM   77 (179)
T ss_dssp             HHHHHCTTCSSCBCHHHHHHHH--HHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH--HHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHc
Confidence            7778888888877777776655  2223222 56688899999999999999999998876543

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=88.15  E-value=0.19  Score=48.70  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=26.8

Q ss_pred             CCCeecccCCCCEEEccC----CcEEEEecCCccc
Q psy9090          23 NHVIHRDLRGSNVLLTKD----GEVKIVDFGLSRE   53 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~----~~vkL~Dfg~a~~   53 (488)
                      ..++|||+.|.||+++.+    +.+.++||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            469999999999999874    6799999998764

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=87.73  E-value=0.33  Score=46.65  Aligned_cols=28  Identities=29%  Similarity=0.360  Sum_probs=24.2

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ..++|+|++|.||+++ + .+.++||+.+.
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            4589999999999998 4 89999998764

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=87.43  E-value=0.015  Score=51.97  Aligned_cols=30  Identities=7%  Similarity=0.210  Sum_probs=15.8

Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+.++.+++.+|.+++|.++++||+..+..
T Consensus        92 ~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~  121 (197)
T 3pm8_A           92 PPDIHQVLRDIDSNASGQIHYTDFLAATID  121 (197)
T ss_dssp             CHHHHHHHHC-------CEEHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            455677777777777777777777766544

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=87.06  E-value=0.014  Score=49.01  Aligned_cols=61  Identities=5%  Similarity=0.000  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHH-HHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHL-IFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~-~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|... .+.++.+++.+ +.+++|.++++||+..+...
T Consensus         8 ~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~   70 (148)
T 1m45_A            8 DIFTLFDKKGQGAIAKDSLGDYLR--AIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVN   70 (148)
T ss_dssp             TCHHHHCTTCCSEEEGGGHHHHHH--HTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHH--HhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHH
Confidence            588889988888888888876662  223222 56788999999 99999999999999887765

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=86.94  E-value=0.019  Score=50.39  Aligned_cols=57  Identities=16%  Similarity=0.246  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +|..+|.+.+|.|+..+.+.++-  ..|. ..+.++.+++.++.+++|.++++||+..+.
T Consensus        44 ~F~~~D~d~~G~i~~~El~~~l~--~~g~-~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~  100 (180)
T 3mse_B           44 LFYKLDTNHNGSLSHREIYTVLA--SVGI-KKWDINRILQALDINDRGNITYTEFMAGCY  100 (180)
T ss_dssp             HHHHHCTTCSSSEEHHHHHHHHH--HTTC-CHHHHHHHHHHHCTTCCSEECHHHHHHHHS
T ss_pred             HHHHhCCCCCCcCCHHHHHHHHH--HcCC-CHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            55555555555555555554441  1121 246688899999999999999999986554

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=86.88  E-value=0.029  Score=48.33  Aligned_cols=62  Identities=13%  Similarity=0.006  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEc-cccc--CC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLA-GETL--AG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~s-gesg--ag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++-+ |..+  .. ..+.++.+++.++.+++|.++++||+..+..
T Consensus         5 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~   70 (167)
T 1gjy_A            5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV   70 (167)
T ss_dssp             HHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence            5789999999999998888877633 3211  11 2567899999999999999999999988755

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=86.75  E-value=0.017  Score=50.77  Aligned_cols=62  Identities=10%  Similarity=0.046  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCc-----EEEEcccccCCchh------hHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQ-----HIVLAGETLAGKTT------SLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q-----~i~~sgesgagkte------~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|.+.+|.|+..+.+     .++  -..|...++      .++.+++.++.+++|.++++||+..+...+
T Consensus        20 ~~F~~~D~d~~G~i~~~El~~~~~~~~l--~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~   92 (191)
T 1uhk_A           20 HMFNFLDVNHNGKISLDEMVYKASDIVI--NNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLA   92 (191)
T ss_dssp             HHHHHHCTTCCSEEEHHHHHHHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCCcCcHHHHHHHHHHHHH--HHcCCCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHHHHHHHh
Confidence            38888999888888888887     444  222322333      488899999999999999999998876643

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=86.69  E-value=0.21  Score=48.79  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=25.6

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      ..++|+|++|.||+++..+.+.|+||+.+..
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            4699999999999999644578999987653

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=86.64  E-value=0.022  Score=50.31  Aligned_cols=61  Identities=7%  Similarity=0.027  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHhcCCCc-----EEEEcccccCCchh------hHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQ-----HIVLAGETLAGKTT------SLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q-----~i~~sgesgagkte------~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+.+|.|+..+.+     .++  -..|...++      .++.+++.++.+++|.++++||+..+...+
T Consensus        25 ~F~~~D~d~~G~i~~~El~~~~~~~~l--~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~   96 (195)
T 1qv0_A           25 MFDFLDINGNGKITLDEIVSKASDDIC--AKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLA   96 (195)
T ss_dssp             HHHHHCTTCSSCBCHHHHHHHHHHTHH--HHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHH
T ss_pred             HHhHcCCCCCCcCcHHHHHHHHHHHHH--HHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHHHHHH
Confidence            8888888888888888877     343  122322233      488899999999999999999999876654

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=86.46  E-value=0.021  Score=48.68  Aligned_cols=61  Identities=11%  Similarity=0.104  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+|.+..|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+...+
T Consensus        25 ~F~~~D~d~~G~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~   86 (162)
T 1top_A           25 AFDMFDADGGGDISTKELGTVM--RMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM   86 (162)
T ss_dssp             HHHTTTCSCSSEEEGGGHHHHH--HHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCCHHHHHHHH--HHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHh
Confidence            6666666666666666665555  2223222 56788999999999999999999998887654

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=86.41  E-value=0.012  Score=55.14  Aligned_cols=91  Identities=12%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             CCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~  309 (488)
                      +++.|...||...+.........    ..+|..+|.+.+|.|+..+...++..  -+.+ ..+.++.+++.+|.+++|.|
T Consensus       105 ~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~--~~~~~~~~~l~~~F~~~D~d~dG~I  182 (256)
T 2jul_A          105 PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSI--LLRGTVHEKLKWAFNLYDINKDGCI  182 (256)
T ss_dssp             TTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHH--HHSCCHHHHHHHHHHHTCCSSSSCB
T ss_pred             CCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHH--HhccChHHHHHHHHHHhCCCCCCcC
Confidence            34667778887766532211112    23888888888888777776655521  1122 36778999999999999999


Q ss_pred             hhhhHhhhcchhhhhhhc
Q psy9090         310 KVGEKIEKCVNVIHAIGN  327 (488)
Q Consensus       310 ~~~e~i~~~~~~leafgn  327 (488)
                      +++||...+..+.+..|.
T Consensus       183 ~~~Ef~~~l~~~~~~~g~  200 (256)
T 2jul_A          183 TKEEMLAIMKSIYDMMGR  200 (256)
T ss_dssp             CHHHHHHHHHHHHHHCCC
T ss_pred             cHHHHHHHHHHHHHHhCC
Confidence            999999998888776663

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=86.37  E-value=0.016  Score=50.20  Aligned_cols=94  Identities=7%  Similarity=-0.070  Sum_probs=59.8

Q ss_pred             ceeeeCCCCCCCCCCchhhhh----ccCCCCCCCCh--------------hhHHHHHHHHHHHHhcCCCcEEEEcccccC
Q psy9090         227 VLLFINPNTHLNLYGTKYHFK----YKFKSRSDNEP--------------HIYAVADSAYQDMMHHEEAQHIVLAGETLA  288 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~----~~~~~~~~~~p--------------h~f~~~d~~~~~~~~~~~~q~i~~sgesga  288 (488)
                      ++..+|.++++.|...|+...    ..........+              .+|+.+|.+..|.|+..+-..++..-..+.
T Consensus        12 ~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~~~~~~~~~~   91 (176)
T 1nya_A           12 RFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQ   91 (176)
T ss_dssp             HHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHHHHHHSSS
T ss_pred             HHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcCC
Confidence            345668888899999999873    32222222222              467777777777666666544432111111


Q ss_pred             Cc-------hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         289 GK-------TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       289 gk-------te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ..       .+.++.+++.+|.+++|.++.+|+...+..
T Consensus        92 ~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~  130 (176)
T 1nya_A           92 GEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTA  130 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            11       245888899999999999999999876543

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=86.34  E-value=0.34  Score=47.18  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCccc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE   53 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~~   53 (488)
                      ..++|+|+.|.||+++.++.+.++||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            3699999999999999888899999987654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=86.12  E-value=1.3  Score=39.96  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=27.3

Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHh
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFL  304 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~  304 (488)
                      .....+.+++.|++|+|||.-++.+.+.+...
T Consensus        48 ~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~   79 (242)
T 3bos_A           48 SGDGVQAIYLWGPVKSGRTHLIHAACARANEL   79 (242)
T ss_dssp             HTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             hCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            33467899999999999999999999888765

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=86.05  E-value=0.03  Score=48.50  Aligned_cols=60  Identities=7%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEccccc-CC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETL-AG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesg-ag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++-+  .| .. ..+.++.+++.++.+++|.++++||+..+..
T Consensus        11 ~~F~~~D~d~~G~i~~~e~~~~l~~--~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~   72 (172)
T 2znd_A           11 NVFQRVDKDRSGVISDTELQQALSN--GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY   72 (172)
T ss_dssp             HHHHHHCTTCSSCEEHHHHHHHCCC--SSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHHh--cCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            3888999999998888888877732  22 11 2567889999999999999999999987654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=85.81  E-value=0.37  Score=42.64  Aligned_cols=24  Identities=38%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             EEEEcccccCCchhhHHHHHHHHH
Q psy9090         279 HIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       279 ~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      -|+|||.||+|||.-++.+++...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            488999999999988888887653

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=85.81  E-value=0.0098  Score=53.36  Aligned_cols=94  Identities=12%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             eCCC-CCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhc
Q psy9090         231 INPN-THLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLG  305 (488)
Q Consensus       231 Inp~-~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~  305 (488)
                      .|.+ +++.|...||.............+   .+|..+|.+.+|.|+..+...++..  .+.+ ..+.++.+++.+|.++
T Consensus        31 ~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~--~~~~~~~~~~~~~F~~~D~d~  108 (204)
T 1jba_A           31 FLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNL--VLRGTLEHKLKWTFKIYDKDR  108 (204)
T ss_dssp             HHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHH--HSSCCCTHHHHHHHHHHCSSC
T ss_pred             HHhhCCCCCcCHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHH--HccCCHHHHHHHHHHHhCCCC
Confidence            3445 567788888887765443311111   2888888888887777766655421  1111 3567899999999999


Q ss_pred             CCCchhhhHhhhcchhhhhhh
Q psy9090         306 QGAAKVGEKIEKCVNVIHAIG  326 (488)
Q Consensus       306 ~g~~~~~e~i~~~~~~leafg  326 (488)
                      +|.|+.+|+...+..+....|
T Consensus       109 ~G~I~~~E~~~~l~~~~~~~g  129 (204)
T 1jba_A          109 NGCIDRQELLDIVESIYKLKK  129 (204)
T ss_dssp             SSCBCHHHHHHHHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHHHHhC
Confidence            999999999998877765444

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=85.72  E-value=0.011  Score=52.04  Aligned_cols=58  Identities=10%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +|..+|.+++|.|+..+.+.++  ...|-. ..+.+..+++.++.+++|.++++||+..+.
T Consensus        16 ~F~~~D~d~dG~I~~~El~~~l--~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~~   74 (176)
T 2lhi_A           16 AFALFDKDNNGSISSSELATVM--RSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMS   74 (176)
T ss_dssp             HHHTTCSSCSSCBCHHHHHHHH--HHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHHT
T ss_pred             HHHHHCCCCCCCCCHHHHHHHH--HHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHHH
Confidence            7777888888888777777665  222222 255677888888888888888888887654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=85.71  E-value=0.62  Score=45.72  Aligned_cols=28  Identities=29%  Similarity=0.532  Sum_probs=23.7

Q ss_pred             CCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          24 HVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        24 givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      .++|+|++|.|||++.++ +.++||..+.
T Consensus       213 ~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             EEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            599999999999998654 8999998765

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=85.47  E-value=0.038  Score=47.30  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+..|.|+..+.+.++  ...|... .+.+..+++.++.+++|.++++||+..+..
T Consensus        32 ~F~~~D~~~~G~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~   91 (166)
T 2aao_A           32 MFNMIDADKSGQITFEELKAGL--KRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLH   91 (166)
T ss_dssp             HHHHHCTTCCSSBCHHHHHHHG--GGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHTT
T ss_pred             HHHHhCCCCCCeEeHHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            4555555555555544444433  1112222 345677777788888888888888776644

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=85.39  E-value=0.024  Score=46.27  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=41.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+.+.++  ...|... .+.++.+++.++.+++|.++++||+..+..
T Consensus         4 ~~F~~~D~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~   64 (134)
T 1jfj_A            4 ALFKEIDVNGDGAVSYEEVKAFV--SKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS   64 (134)
T ss_dssp             HHHHHHCTTCSSEEEHHHHHHHH--HTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTC
T ss_pred             HHHHHHCCCCCCcCCHHHHHHHH--HHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHH
Confidence            46777777777777766666554  2222222 556788888888888899999998887754

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=85.14  E-value=0.011  Score=52.05  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             CCCCCCCchhhhhccCCCCC-CCC---hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRS-DNE---PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~-~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~  309 (488)
                      +++.|...||...+...... ...   ..+|..+|.+.+|.|+..+...++.. |.  ....+.++.+++.+|.+++|.|
T Consensus        39 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~D~d~~G~i  116 (190)
T 1fpw_A           39 PSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSR--GTLEEKLSWAFELYDLNHDGYI  116 (190)
T ss_dssp             TTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSC--CCSTHHHHHHHHHHCSSCSSEE
T ss_pred             CCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHHcc--CCcHHHHHHHHHHhcCCCCCcC
Confidence            45667778887766432111 112   23888888888887777766655421 21  1135678999999999999999


Q ss_pred             hhhhHhhhcchhhhhhhc
Q psy9090         310 KVGEKIEKCVNVIHAIGN  327 (488)
Q Consensus       310 ~~~e~i~~~~~~leafgn  327 (488)
                      +++||+..+..+....|.
T Consensus       117 ~~~ef~~~~~~~~~~~g~  134 (190)
T 1fpw_A          117 TFDEMLTIVASVYKMMGS  134 (190)
T ss_dssp             EHHHHHHHHHHHHTTSCS
T ss_pred             cHHHHHHHHHHHHHHhcc
Confidence            999999988777655554

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=85.10  E-value=0.018  Score=48.87  Aligned_cols=61  Identities=7%  Similarity=0.058  Sum_probs=46.0

Q ss_pred             hHHHHH-HHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVAD-SAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~d-~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+| .+.+|.|+..+.+.++-  ..|.. ..+.++.+++.++.+++|.++++||+..+...+
T Consensus        18 ~F~~~D~~~~~G~i~~~e~~~~l~--~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~   80 (158)
T 2jnf_A           18 AFRDFETPEGSGRVSTDQIGIILE--VLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFL   80 (158)
T ss_dssp             HHHHSBCSSSCSSEEHHHHHHHHH--HTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHC
T ss_pred             HHHHhCCCCCCCcCcHHHHHHHHH--HhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence            777777 77777777777766552  22222 356789999999999999999999999876553

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=84.48  E-value=0.063  Score=47.74  Aligned_cols=60  Identities=15%  Similarity=0.055  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEc-ccccC--C-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         261 YAVADSAYQDMMHHEEAQHIVLA-GETLA--G-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       261 f~~~d~~~~~~~~~~~~q~i~~s-gesga--g-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      |..+|.+.+|.|+..+.+.++-+ |..+.  . ..+.++.+++.+|.+++|.++++||+..+..
T Consensus        38 F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~  101 (198)
T 1juo_A           38 YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV  101 (198)
T ss_dssp             HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHH
T ss_pred             HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence            99999999999999998887743 32111  1 2567899999999999999999999987764

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=84.20  E-value=0.025  Score=49.60  Aligned_cols=87  Identities=7%  Similarity=-0.075  Sum_probs=58.0

Q ss_pred             CC-C--CCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH-HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCc
Q psy9090         234 NT-H--LNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM-MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       234 ~~-~--~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~-~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~  309 (488)
                      ++ +  +.|...|+.. ............+|+.+|.+..|. |+..+-..++..-..+....+.++.+.+.+|.+++|.|
T Consensus        37 ~~~~~~G~i~~~el~~-l~~~g~~~~~~~l~~~~D~d~~G~~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I  115 (183)
T 1dgu_A           37 VESSLRAQVPFEQILS-LPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTL  115 (183)
T ss_dssp             SCCCTTTCSCHHHHHT-STTSSSCTTHHHHHHHHSCSSSSCCCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTCSSEE
T ss_pred             ccccccCcCcHHHHHH-HHhhhcCcHHHHHHHHhCCCCCCCEecHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCcC
Confidence            45 6  7788888877 433222223345888888888777 76666544332111122234689999999999999999


Q ss_pred             hhhhHhhhcchh
Q psy9090         310 KVGEKIEKCVNV  321 (488)
Q Consensus       310 ~~~e~i~~~~~~  321 (488)
                      +.+|+...+..+
T Consensus       116 ~~~El~~~l~~~  127 (183)
T 1dgu_A          116 NREDLSRLVNCL  127 (183)
T ss_dssp             EHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999998766543

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=83.95  E-value=0.019  Score=48.37  Aligned_cols=61  Identities=5%  Similarity=-0.039  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHh--cCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFL--GQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~--~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|... .+.++.+++.++.+  ++|.++++||+..+...
T Consensus        14 ~~F~~~D~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~   77 (151)
T 1w7j_B           14 EAFELFDRVGDGKILYSQCGDVMR--ALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV   77 (151)
T ss_dssp             HHHHHHCCSSSSEEESTTHHHHHH--HTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHHH--HcCCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHHH
Confidence            489999999999999988887662  233222 56788899999988  99999999999887654

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=83.94  E-value=0.091  Score=46.57  Aligned_cols=60  Identities=10%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             hhHHHHHHH-HHHHHhcCCCcEEEEcccccCCc--hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSA-YQDMMHHEEAQHIVLAGETLAGK--TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~-~~~~~~~~~~q~i~~sgesgagk--te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+ .+|.|+..+.+.++  ...|...  .+.++.+++.+|.+++|.|+++||+..+..
T Consensus        18 ~~f~~fd~~~~~G~i~~~e~~~~l--~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~   80 (198)
T 2r2i_A           18 QWYKKFMTECPSGQLTLYEFKQFF--GLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSL   80 (198)
T ss_dssp             HHHHHHHHHCTTSEECHHHHHHHH--TCCSCCHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcCCHHHHHHHH--HHhCCCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH
Confidence            488999988 78888888887766  3333222  245888999999999999999999987654

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=83.64  E-value=0.035  Score=46.16  Aligned_cols=93  Identities=5%  Similarity=0.029  Sum_probs=59.6

Q ss_pred             ceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEccc-ccCCchhhHHHHHHHHHHhc
Q psy9090         227 VLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGE-TLAGKTTSLKHLLKHLIFLG  305 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sge-sgagkte~~k~i~~~~~~~~  305 (488)
                      ++..+|.++++.|...|+.............+.+..+++.+..|.|+..+-..++..-- ......+.++.+.+.+|.++
T Consensus        10 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~   89 (145)
T 2bl0_B           10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEG   89 (145)
T ss_dssp             HHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTSSEECHHHHHHHHTSCCCCGGGGHHHHHHHHHHHCSSS
T ss_pred             HHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCeEcHHHHHHHHHHHhhcCcccHHHHHHHHHHhCCCC
Confidence            45567788888888889887665443333344566666665555544444332221100 11123577889999999999


Q ss_pred             CCCchhhhHhhhcc
Q psy9090         306 QGAAKVGEKIEKCV  319 (488)
Q Consensus       306 ~g~~~~~e~i~~~~  319 (488)
                      +|.++.+|+...+.
T Consensus        90 ~G~i~~~e~~~~l~  103 (145)
T 2bl0_B           90 NGTIQEAELRQLLL  103 (145)
T ss_dssp             SSEEEHHHHHHHHH
T ss_pred             CCeEcHHHHHHHHH
Confidence            99999999987664

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=83.54  E-value=0.039  Score=48.60  Aligned_cols=63  Identities=5%  Similarity=-0.065  Sum_probs=43.4

Q ss_pred             hHHHH-HHHHHHHHhcCCCcEEEEcc--cccCCc-hhhHHHHH-----------HHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYAVA-DSAYQDMMHHEEAQHIVLAG--ETLAGK-TTSLKHLL-----------KHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~~~-d~~~~~~~~~~~~q~i~~sg--esgagk-te~~k~i~-----------~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|..+ |.+.+|.|+..+.+.++-.-  ..|... .+.++.++           +.+|.+++|.++++||+..+....
T Consensus        17 ~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~~   94 (191)
T 2ccm_A           17 VFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWAECV   94 (191)
T ss_dssp             HHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH
T ss_pred             hccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHHHHHHHHHh
Confidence            77777 77777777777766555210  002222 44566666           899999999999999998876643

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=83.30  E-value=0.081  Score=44.04  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHH---HHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHL---IFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~---~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..+.+.++-  ..|.. ..+.+..+++.+   +.++ |.++++||+..+...
T Consensus        12 ~~F~~~D~~~~G~i~~~el~~~l~--~~~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~   75 (149)
T 2mys_C           12 EAFLLFDRTGDAKITASQVGDIAR--ALGQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAA   75 (149)
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHH--HhCCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHH
Confidence            488888998888888888877652  22322 256788899999   8899 999999999877654

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=83.22  E-value=0.26  Score=40.87  Aligned_cols=61  Identities=7%  Similarity=-0.095  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|+.+|.+.+|.|+..+-..++..--......+.++.+.+.+|.+++|.|+.+|+...+.
T Consensus         7 ~l~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~   67 (135)
T 3h4s_E            7 SMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSG   67 (135)
T ss_dssp             ------------CCCC-----------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHHHGG
T ss_pred             HHHHHHcCCCCCcEeHHHHHHHHHHHccccchHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence            4889999999999999998877732111112356789999999999999999999887654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=82.87  E-value=0.76  Score=45.55  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=25.0

Q ss_pred             HCCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          22 ENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        22 ~~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ...++|+|+.|.||+++.+ .++++||..+.
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~  255 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAF  255 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCcccc
Confidence            3579999999999999865 48899997654

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=82.78  E-value=0.022  Score=50.08  Aligned_cols=30  Identities=20%  Similarity=0.432  Sum_probs=23.2

Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+.++.+++.+|.+++|.++++||+..+..
T Consensus        86 ~~~~~~~~~~~D~d~~g~i~~~ef~~~~~~  115 (191)
T 3khe_A           86 EAEVDHILQSVDFDRNGYIEYSEFVTVCMD  115 (191)
T ss_dssp             HHHHHHHHHHTCTTCSSSEEHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            456777888888888888888888877643

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=82.68  E-value=0.03  Score=50.26  Aligned_cols=61  Identities=8%  Similarity=-0.039  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHH-------HHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLL-------KHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~-------~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|..+|.+.+|.|+..+.+.++-+ |..+.-..+.++.++       +.+|.+++|.++++||+..+.
T Consensus        40 ~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~~~lf~~~D~d~dg~i~~~EF~~~~~  108 (208)
T 2hpk_A           40 KRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANR  108 (208)
T ss_dssp             HHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCBTTTBEEGGGHHHHHH
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence            4888899999998888888776632 221111256688888       999999999999999998764

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=82.65  E-value=0.081  Score=46.36  Aligned_cols=62  Identities=11%  Similarity=-0.084  Sum_probs=45.1

Q ss_pred             hhHHHHHHH-HHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSA-YQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~-~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+ .+|.|+..+.+.++-+ +..| ..++.++.+++.+|.+++|.++++||+..+..+
T Consensus        29 ~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~-~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~   92 (190)
T 1g8i_A           29 QWYKGFIKDCPSGQLDAAGFQKIYKQFFPFG-DPTKFATFVFNVFDENKDGRIEFSEFIQALSVT   92 (190)
T ss_dssp             HHHHHHHHHCTTSEEEHHHHHHHHHHHCTTS-CTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcCCHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhcCCCCeEeHHHHHHHHHHh
Confidence            388888888 7788887777766532 2222 135678889999999999999999998776543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=82.55  E-value=0.82  Score=42.75  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             cCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhh
Q psy9090         274 HEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG  312 (488)
Q Consensus       274 ~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~  312 (488)
                      ....+.++|.|++|+|||...+.++..+.....|.+.+.
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~   60 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI   60 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence            456677888999999999999999999887646766443

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=82.39  E-value=0.027  Score=49.89  Aligned_cols=57  Identities=14%  Similarity=0.197  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +|..+|.+..|.|+..+.+.++  ...|... .+.++.+++.+|.+++|.++++||+..+
T Consensus        15 ~F~~~D~d~dG~I~~~E~~~~l--~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~   72 (188)
T 1s6i_A           15 LFKMIDTDNSGTITFDELKDGL--KRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT   72 (188)
T ss_dssp             HHHTTSSSSSSCEEHHHHHHHH--TTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHH
T ss_pred             HHHHHCCCCCCcCCHHHHHHHH--HHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHH
Confidence            5555555555555555554444  1112111 3455666666666666666666666554

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=82.25  E-value=0.034  Score=47.08  Aligned_cols=61  Identities=5%  Similarity=0.008  Sum_probs=47.4

Q ss_pred             hhHHHHHH--HHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADS--AYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~--~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|.  +.+|.|+..+.+.++-  ..|... .+.++.+ +.++.+++|.++++||+..+...+
T Consensus        13 ~~F~~~D~~~d~~G~i~~~el~~~l~--~~g~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~~   76 (156)
T 1wdc_C           13 DVFELFDFWDGRDGAVDAFKLGDVCR--CLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGLM   76 (156)
T ss_dssp             HHHHHHHHHTCSSSCEEGGGHHHHHH--HTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHHT
T ss_pred             HHHHHHccCCCCCCCCcHHHHHHHHH--HcCCCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHHh
Confidence            38999999  9999999999887763  223222 4557777 888889999999999998877653

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=82.10  E-value=0.012  Score=51.37  Aligned_cols=93  Identities=17%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             eeee-CCCCCCCCCCchhhhhccCCC----CCCCChh--------------hHHHHHHHHHHHHhcCCCcEEEEc--cc-
Q psy9090         228 LLFI-NPNTHLNLYGTKYHFKYKFKS----RSDNEPH--------------IYAVADSAYQDMMHHEEAQHIVLA--GE-  285 (488)
Q Consensus       228 l~~I-np~~~~~i~~~ef~~~~~~~~----~~~~~ph--------------~f~~~d~~~~~~~~~~~~q~i~~s--ge-  285 (488)
                      +..+ |.++++.|...||..+.....    .....+.              +|+.+|.+..|.|+..+...++..  ++ 
T Consensus        14 F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~   93 (185)
T 2sas_A           14 FDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATC   93 (185)
T ss_dssp             HHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHTC
T ss_pred             HHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHHHHhccc
Confidence            4456 778888888888865543221    1112222              288888887777666665443321  11 


Q ss_pred             ---cc--CCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         286 ---TL--AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       286 ---sg--agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                         ..  ....+.++.+++.+|.+++|.|+.+||...+..
T Consensus        94 ~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~  133 (185)
T 2sas_A           94 KSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKN  133 (185)
T ss_dssp             CSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTS
T ss_pred             cchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHH
Confidence               00  112367889999999999999999999977643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=81.06  E-value=1.5  Score=37.55  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHH
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIF  303 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~  303 (488)
                      .......+++.|++|.|||.-++.+.+.+..
T Consensus        39 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           39 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             TSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             hcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3356788999999999999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	3e-65
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	7e-63
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	1e-61
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	3e-61
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	4e-59
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	4e-59
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-54
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-48
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	6e-48
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-47
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	6e-45
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-45
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	6e-44
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-42
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-42
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-41
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-39
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-39
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-39
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-38
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-37
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-36
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-36
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-36
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	8e-36
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-36
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-35
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-35
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-34
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-34
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-34
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-34
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-34
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-34
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-34
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-33
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-33
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-33
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-33
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-33
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-33
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	8e-33
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	9e-33
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-32
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-32
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-32
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-32
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-32
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	9e-32
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-31
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-31
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	9e-31
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-30
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-30
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-30
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	8e-30
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-29
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-28
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-28
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-27
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-27
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-27
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-27
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-25
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-24
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-24
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-17
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-09

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score =  221 bits (563), Expect = 3e-65
 Identities = 88/298 (29%), Positives = 146/298 (48%), Gaps = 16/298 (5%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           V D   L  I+E+  ++ L  RH S N Y+++GDV++  NP  +LN+Y       Y  + 
Sbjct: 2   VPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRY 61

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG 312
           + +  PH+YA+A+ AY+ M   +E Q ++++GE+ AGKT + K +++ L F+    +  G
Sbjct: 62  KYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNG 121

Query: 313 EKIEKCV----NVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRV 368
           E+I K +     ++ A GNA T  N NS+R   YM++ F + G   G     Y LEK RV
Sbjct: 122 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRV 181

Query: 369 TGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT 428
            G     + +FHIFY     +  +   +         Y YL+          G  +    
Sbjct: 182 VGRTQG-ERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKS--------GCFDVSTI 232

Query: 429 N-VAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVA 484
           +   +F+ I + +  +   +  Q  I+  +LAAIL IG + F  +AE        +V+
Sbjct: 233 DDSGEFKIIVKAMETLGLKESDQNSIWR-ILAAILHIGNITFAEAAEQRTGTTTVKVS 289

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  215 bits (548), Expect = 7e-63
 Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 14/299 (4%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED++ L  ++E  +   L  R+N    Y++ G  L+ +NP   + +Y  +    +K + 
Sbjct: 41  VEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRR 100

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ-----G 307
           R++  PHI+A++D AY+ M+   + Q +++ GE+ AGKT + K ++++L  +       G
Sbjct: 101 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 160

Query: 308 AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWR 367
           +  + ++I +   ++ A GNA T  N NS+R   ++++ F ++G +SGA    Y LEK R
Sbjct: 161 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSR 220

Query: 368 VTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPD 427
           V   +   + N+HIFY       A  E     L+    + YL      D           
Sbjct: 221 VVF-QSETERNYHIFYQLLAGATAE-EKKALHLAGPESFNYLNQSGCVD-------IKGV 271

Query: 428 TNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAAN 486
           ++  +F+   Q +  + F   +      ++A IL +G ++FE  A   A L +      
Sbjct: 272 SDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNA 330

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score =  211 bits (539), Expect = 1e-61
 Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 12/297 (4%)

Query: 193 VEDLAALETISEDNIVQELEER-HNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFK 251
             DL AL  + E  ++  L+ R  +SK  Y++ G VL+ INP   L +YG      Y  +
Sbjct: 9   ENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQ 68

Query: 252 SRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGA--A 309
           +  D +PHI+AVA+ AY+ M   E  Q I+++GE+ AGKT S K+ +++   +   A  A
Sbjct: 69  NMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEA 128

Query: 310 KVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVT 369
            V EK+     ++ +IGNA T  N NS+R   Y+++ F    ++ GA    Y LEK RV 
Sbjct: 129 NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVV 188

Query: 370 GNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDTN 429
             +   + N+HIFY    +  A  E     L     + Y +   +       P      +
Sbjct: 189 -FQAEEERNYHIFYQLCASA-ALPEFKTLRLGNANYFHYTKQGGS-------PVIDGIDD 239

Query: 430 VAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAAN 486
             +     Q    +   D        +LA IL +G VEF S   ++  +        
Sbjct: 240 AKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLT 296

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  211 bits (539), Expect = 3e-61
 Identities = 85/322 (26%), Positives = 153/322 (47%), Gaps = 32/322 (9%)

Query: 184 KDQELQTMH------VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHL 237
           K+Q    M+      +ED+A +  ++E +++  L  R+ S   Y++ G   + +NP   L
Sbjct: 22  KEQTAAFMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRL 81

Query: 238 NLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHL 297
            +Y      KY+ K +++  PH+++VAD+AYQ+M+   E Q  ++ GE+ AGKT + K +
Sbjct: 82  PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKV 141

Query: 298 LKHLIFLGQGAAK------------VGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQV 345
           + +L  +     K            + ++I +   V+ A GNA T  N NS+R   ++++
Sbjct: 142 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 201

Query: 346 TFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRK 405
            FG +GK++GA    Y LEK RVT  +   + N+HIFY            D   ++P   
Sbjct: 202 HFGPTGKIAGADIETYLLEKSRVT-YQQSAERNYHIFYQICSNAIPE-LNDVMLVTPDSG 259

Query: 406 YRYLRADVTDDKLPKGPRETPDTN-VAKFQEIYQNLIDIEF-DDIQMEIFSNVLAAILLI 463
                       + +G     + + V +F+   +    + F  + +  +F    A+IL +
Sbjct: 260 LYSF--------INQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCT-ASILHM 310

Query: 464 GEVEF-ESSAENTAELANPEVA 484
           GE++F +   E  AE      A
Sbjct: 311 GEMKFKQRPREEQAESDGTAEA 332

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  206 bits (524), Expect = 4e-59
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 28/310 (9%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           +ED+A +  + E  ++  L+ER+ +   Y++ G   + +NP   L +Y  K    Y+ K 
Sbjct: 39  IEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPKVVLAYRGKK 98

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAK-- 310
           R +  PHI++++D+AYQ M+   E Q I++ GE+ AGKT + K ++++   +     K  
Sbjct: 99  RQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKK 158

Query: 311 ----------VGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGAIFWL 360
                     + ++I     ++ A GNA T  N NS+R   ++++ FG++GKL+ A    
Sbjct: 159 EEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIET 218

Query: 361 YQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRK-YRYLRADVTDDKLP 419
           Y LEK RVT  + P + ++HIFY      +    +D   ++     Y Y+          
Sbjct: 219 YLLEKSRVT-FQLPAERSYHIFYQIMSNKKPE-LIDMLLITTNPYDYHYVS--------- 267

Query: 420 KGPRETPDTN-VAKFQEIYQNLIDIEFDDI-QMEIFSNVLAAILLIGEVEF-ESSAENTA 476
           +G    P  +   +       +  + F    +  I+     A++  G ++F +   E  A
Sbjct: 268 EGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKL-TGAVMHYGNLKFKQKQREEQA 326

Query: 477 ELANPEVAAN 486
           E    EVA  
Sbjct: 327 EPDGTEVADK 336

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  204 bits (521), Expect = 4e-59
 Identities = 82/311 (26%), Positives = 138/311 (44%), Gaps = 28/311 (9%)

Query: 193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKS 252
           VED+A L  ++E +++  L ER+ S   Y++ G   + INP   L +Y  K    YK K 
Sbjct: 7   VEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKK 66

Query: 253 RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG----- 307
           R +  PHIYA+AD+AY+ M+   E Q I+  GE+ AGKT + K ++++L  +        
Sbjct: 67  RHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKK 126

Query: 308 -----------AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFGSSGKLSGA 356
                        ++ +++ +   ++ A GNA T  N NS+R   ++++ F  +G + GA
Sbjct: 127 DTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 186

Query: 357 IFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDD 416
               Y LEK R    +   +  FHIFYY           +   L     Y +L       
Sbjct: 187 NIETYLLEKSRAI-RQAKDERTFHIFYYLIAGAS-EQMRNDLLLEGFNNYTFLS------ 238

Query: 417 KLPKGPRETPDTNVAK-FQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENT 475
               G    P     + FQE  + +  + F + +      V++++L +G + F+      
Sbjct: 239 ---NGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTD 295

Query: 476 AELANPEVAAN 486
                   AA 
Sbjct: 296 QASMPDNTAAQ 306

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (464), Expect = 1e-54
 Identities = 69/167 (41%), Positives = 113/167 (67%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++E  I  + K+ +  + +LH+N +IHRDL+  N+L T DG++K+ DFG+S +   T  +
Sbjct: 107 LTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR 166

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + +F+G+P WMAPE++ C   +   YD + DVW+LGIT IE+ + +PP  +++P R L +
Sbjct: 167 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLK 226

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I ++ PP L + S WS ++ DF+ +CLEKN + R   S+LL+HPF+T
Sbjct: 227 IAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVT 273

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (418), Expect = 6e-48
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 5/166 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           M E  IA + +E +  + FLH N VIHRD++  N+LL  DG VK+ DFG   +      K
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T +G+P WMAPE++         Y  ++D+W+LGI AIE+ +G+PP+ + +P RAL+ 
Sbjct: 173 RSTMVGTPYWMAPEVVTRKA-----YGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           I  N  P L      S  + DF+  CL+ + E R    ELL+H F+
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (415), Expect = 6e-48
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
             EQ  A  + E+   + + H   VIHRD++  N+LL   GE+KI DFG S    ++  +
Sbjct: 103 FDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--R 160

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
           + T  G+  ++ PE++         +D ++D+W+LG+   E   GKPPFE         +
Sbjct: 161 RTTLCGTLDYLPPEMIEGR-----MHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKR 215

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS 168
           I R            ++   D I+  L+ NP  RP + E+LEHP+IT+
Sbjct: 216 ISRVEFT---FPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA 260

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  163 bits (413), Expect = 5e-47
 Identities = 62/167 (37%), Positives = 103/167 (61%), Gaps = 7/167 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  IA +    + G+ +LH +++IHRD++  N+LL++ G VK+ DFG +         
Sbjct: 112 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSAS----IMAP 167

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             +F+G+P WMAPE++    +    YD ++DVW+LGIT IEL + KPP  +M+   AL+ 
Sbjct: 168 ANSFVGTPYWMAPEVILAMDEG--QYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH 225

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           I +N  P L ++ +WS+++ +F+  CL+K P+ RP    LL+H F+ 
Sbjct: 226 IAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVL 271

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 6e-45
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHE-----NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA 55
           + E+ +  ++ ++   +   H      + V+HRDL+ +NV L     VK+ DFGL+R   
Sbjct: 106 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 165

Query: 56  NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT 115
           +     K F+G+P +M+PE M         Y+ + D+W+LG    EL    PPF      
Sbjct: 166 HDTSFAKAFVGTPYYMSPEQMNRMS-----YNEKSDIWSLGCLLYELCALMPPFTAFSQK 220

Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
               +I       +     +S    + I   L     HRP + E+LE+P I
Sbjct: 221 ELAGKIREGKFRRI--PYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI 269

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (394), Expect = 9e-45
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 11/169 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANT 57
           M  + +    ++I+ G+ FLH     +IHRDL+  N+ +T   G VKI D GL+     +
Sbjct: 109 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS 168

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
           F K    +G+P +MAPE+        + YD  +DV+A G+  +E+   + P+ +      
Sbjct: 169 FAK--AVIGTPEFMAPEMYE------EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ 220

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
           +++ V +                + I  C+ +N + R  + +LL H F 
Sbjct: 221 IYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (389), Expect = 6e-44
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
                +  I ++   GM +LH   +IHRDL+ +N+ L +D  VKI DFGL+      +  
Sbjct: 101 FEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGS 160

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            + +   GS  WMAPE++R   K  + Y  + DV+A GI   EL  G+ P+ +++    +
Sbjct: 161 HQFEQLSGSILWMAPEVIRMQDK--NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI 218

Query: 119 FQIVRN---PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH--PFITSLPE 171
             +V      P      SN  +     +AECL+K  + RP   ++L        SLP+
Sbjct: 219 IFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPK 276

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 4e-42
 Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 6/169 (3%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           M E        +++ G+V+LH   + HRD++  N+LL +   +KI DFGL+      N  
Sbjct: 100 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 159

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
                  G+  ++APE+++        +   +DVW+ GI    +  G+ P++    +   
Sbjct: 160 RLLNKMCGTLPYVAPELLKRRE----FHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE 215

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT 167
           +   +     L          +  + + L +NP  R  + ++ +  +  
Sbjct: 216 YSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYN 264

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  149 bits (376), Expect = 4e-42
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 3/168 (1%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +SE+    I++ ++  +  LH+ +++HRDL+  N+LL  D  +K+ DFG S +  +  +K
Sbjct: 107 LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ-LDPGEK 165

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVD-GYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
            +   G+PS++APEI+ C   +   GY   +D+W+ G+    L  G PPF        L 
Sbjct: 166 LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR 225

Query: 120 QIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            I+  N   G     ++S    D ++  L   P+ R    E L HPF 
Sbjct: 226 MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFF 273

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  147 bits (373), Expect = 6e-41
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           MSE      ++++  G+  +HEN+ +H DL+  N++ T  +  E+K++DFGL+    +  
Sbjct: 121 MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH-LDPK 179

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
              K   G+  + APE+               D+W++G+ +  L  G  PF   +    L
Sbjct: 180 QSVKVTTGTAEFAAPEVAEGKP-----VGYYTDMWSVGVLSYILLSGLSPFGGENDDETL 234

Query: 119 FQIVRNPPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
             +          A S  S+   DFI + L  +P  R  + + LEHP++T          
Sbjct: 235 RNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQ 294

Query: 178 TVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYS 222
             + +Y           D           I      R +    YS
Sbjct: 295 IPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYS 339

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (358), Expect = 2e-39
 Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 16/183 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETA--NTF 58
             E    F   EI++ + +LH   +IHRDL+  N+LL +D  ++I DFG ++  +  +  
Sbjct: 105 FDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 164

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
            +  +F+G+  +++PE++              D+WALG    +L  G PPF   +     
Sbjct: 165 ARANSFVGTAQYVSPELLTEKS-----ACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF 219

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE------LLEHPFITSLPEN 172
            +I++           +     D + + L  +   R    E      L  HPF  S+   
Sbjct: 220 QKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWE 276

Query: 173 DLH 175
           +LH
Sbjct: 277 NLH 279

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  143 bits (361), Expect = 3e-39
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLL--TKDGEVKIVDFGLSRETANTF 58
           MSE  +   +++   G+  +HE+ ++H D++  N++    K   VKI+DFGL+ +     
Sbjct: 124 MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD- 182

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           +  K    +  + APEI+              D+WA+G+    L  G  PF        L
Sbjct: 183 EIVKVTTATAEFAAPEIVDRE-----PVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETL 237

Query: 119 FQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
             + R +        S+ S    DFI   L+K P  R  + + LEHP++     N
Sbjct: 238 QNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSN 292

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 8e-39
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 49/219 (22%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD 59
           + EQ +  +   +I G+ +L E H ++HRD++ SN+L+   GE+K+ DFG+S +  ++  
Sbjct: 101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 158

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--------- 110
              +F+G+ S+M+PE ++  H     Y  + D+W++G++ +E+  G+ P           
Sbjct: 159 MANSFVGTRSYMSPERLQGTH-----YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213

Query: 111 -----------------------------DMHPTRALFQI---VRNPPPGLYRASNWSQH 138
                                        D  P  A+F++   + N PP    +  +S  
Sbjct: 214 MFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLE 273

Query: 139 YVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHLS 177
           + DF+ +CL KNP  R  + +L+ H FI      ++  +
Sbjct: 274 FQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEVDFA 312

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 6e-38
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
                  F   EII G+ FLH   +++RDL+  N+LL KDG +KI DFG+ +E      K
Sbjct: 100 FDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK 159

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             TF G+P ++APEI+         Y++ +D W+ G+   E+  G+ PF           
Sbjct: 160 TNTFCGTPDYIAPEILLGQK-----YNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHS 214

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-YMSELLEHPFITSLPENDLHLSTV 179
           I  + P          +   D + +   + PE R     ++ +HP    +   +L    +
Sbjct: 215 IRMDNPF---YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKEI 271

Query: 180 NCQYK 184
           +  ++
Sbjct: 272 DPPFR 276

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (347), Expect = 2e-37
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTF 58
           ++E+ I   + ++   + FLH +++ H D+R  N++    +   +KI++FG +R+     
Sbjct: 99  LNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG- 157

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL 118
           D  +    +P + APE+ +             D+W+LG     L  G  PF      + +
Sbjct: 158 DNFRLLFTAPEYYAPEVHQHD-----VVSTATDMWSLGTLVYVLLSGINPFLAETNQQII 212

Query: 119 FQIVRNPPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN 172
             I+         A    S   +DF+   L K  + R   SE L+HP++    E 
Sbjct: 213 ENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIER 267

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (341), Expect = 1e-36
 Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANT 57
            +E+  + ++ +++  + +LH+  ++HRDL+  N+L     +D ++ I DFGLS+   + 
Sbjct: 104 YTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME-DP 162

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                T  G+P ++APE++         Y   +D W++G+ A  L  G PPF D +  + 
Sbjct: 163 GSVLSTACGTPGYVAPEVLAQKP-----YSKAVDCWSIGVIAYILLCGYPPFYDENDAKL 217

Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDLHL 176
             QI++           + S    DFI   +EK+PE R    + L+HP+I      D ++
Sbjct: 218 FEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNI 277

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (342), Expect = 1e-36
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 19/229 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANT 57
            +E+  + I+K I   + +LH  ++ HRD++  N+L T    +  +K+ DFG ++ET  +
Sbjct: 108 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET-TS 166

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
            +   T   +P ++APE++         YD   D+W+LG+    L  G PPF   H    
Sbjct: 167 HNSLTTPCYTPYYVAPEVLGPEK-----YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 221

Query: 118 LFQIVRNPPPGLYR-----ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFIT---SL 169
              +      G Y       S  S+     I   L+  P  R  ++E + HP+I     +
Sbjct: 222 SPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKV 281

Query: 170 PENDLHLSTV--NCQYKDQELQTMHVEDLAALETISEDNIVQELEERHN 216
           P+  LH S V    + + ++++      LA +    E   ++++E+  N
Sbjct: 282 PQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIKIKKIEDASN 330

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 2e-36
 Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 25/243 (10%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            +E+   F   EI++ + +LH   V++RD++  N++L KDG +KI DFGL +E  +    
Sbjct: 102 FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT 161

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
            KTF G+P ++APE++         Y   +D W LG+   E+  G+ PF +    R    
Sbjct: 162 MKTFCGTPEYLAPEVLEDN-----DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFEL 216

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM-----SELLEHPFITSLPENDLH 175
           I+             S      +A  L+K+P+ R         E++EH F  S+   D+ 
Sbjct: 217 ILMEEIR---FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVV 273

Query: 176 L------------STVNCQYKDQELQTMHVEDLAALETISEDNIVQELEERHNSKNHYSF 223
                        S V+ +Y D E     +         S   +  +  E       + +
Sbjct: 274 QKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRYDSLGLLELDQREEQEMFEDFDY 333

Query: 224 VGD 226
           + D
Sbjct: 334 IAD 336

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 8e-36
 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           + +++I  ++ ++  GM +L E++ +HRDL   NVLL      KI DFGLS+      N 
Sbjct: 104 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 163

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
           +  +        W APE +         + ++ DVW+ G+   E    G+ P+  M  + 
Sbjct: 164 YKAQTHGKWPVKWYAPECINYYK-----FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 218

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL---LEHPFITSLPE 171
               + +    G    +   +   D +  C   + E+RP  + +   L + +   + E
Sbjct: 219 VTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNE 274

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 9e-36
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 11/175 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFD 59
           +    +  +  +I +GM ++   + +HRDLR +N+L+ ++   K+ DFGL+R    N + 
Sbjct: 110 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT 169

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELG-DGKPPFEDMHPTRAL 118
            ++       W APE    G      +  + DVW+ GI   EL   G+ P+  M     L
Sbjct: 170 ARQGAKFPIKWTAPEAALYGR-----FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL 224

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE--HPFITSLPE 171
            Q+ R             +   D + +C  K PE RP    L      + TS   
Sbjct: 225 DQVERGYRMPC--PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP 277

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  131 bits (331), Expect = 2e-35
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 18/218 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
                  F   E+   + +LH   +I+RDL+  N+LL K+G +KI DFG ++      D 
Sbjct: 101 FPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP---DV 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T  G+P ++APE++         Y+  ID W+ GI   E+  G  PF D +  +   +
Sbjct: 158 TYTLCGTPDYIAPEVVSTKP-----YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEK 212

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-----MSELLEHPFITSLPENDLH 175
           I+            +++   D ++  + ++   R         ++  HP+   +    L 
Sbjct: 213 ILNAELR---FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLL 269

Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEE 213
              +   Y+    Q     D +  +   E++I   ++ 
Sbjct: 270 SRNIETPYEPPIQQ--GQGDTSQFDKYPEEDINYGVQG 305

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 3e-35
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
              Q +  + K++   M +L     +HRDL   N L+   G VK+ DFGLSR   +    
Sbjct: 97  FQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT 156

Query: 61  KKT-FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRAL 118
                     W  PE++         + ++ D+WA G+   E+   GK P+E    +   
Sbjct: 157 SSVGSKFPVRWSPPEVLMYSK-----FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA 211

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             I +      YR    S+     +  C  +  + RP    LL +
Sbjct: 212 EHIAQGLRL--YRPHLASEKVYTIMYSCWHEKADERPTFKILLSN 254

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 1e-34
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 11/164 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +    +     ++   M +L  N+ +HRDL   NVL+++D   K+ DFGL++E ++T D 
Sbjct: 100 LGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD- 158

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALF 119
             T      W APE +R        +  + DVW+ GI   E    G+ P+  +     + 
Sbjct: 159 --TGKLPVKWTAPEALREKK-----FSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP 211

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           ++ +                 + +  C   +   RP   +L E 
Sbjct: 212 RVEKGYKMDA--PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ 253

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 2e-34
 Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 29/195 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           ++  HI   +   + G+ +LH++ ++HRDL+ +N+LL ++G +K+ DFGL++   +    
Sbjct: 97  LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA 156

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               + +  + APE++         Y   +D+WA+G    EL    P          L +
Sbjct: 157 YTHQVVTRWYRAPELLFGAR----MYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTR 212

Query: 121 IVR-------------------------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRP 155
           I                              P  +  S      +D I      NP  R 
Sbjct: 213 IFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARI 272

Query: 156 YMSELLEHPFITSLP 170
             ++ L+  + ++ P
Sbjct: 273 TATQALKMKYFSNRP 287

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 2e-34
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE--TANTF 58
           ++ + +     ++  GM FL     +HRDL   NVL+T    VKI DFGL+R+  + + +
Sbjct: 161 LTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNY 220

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRA 117
             +        WMAPE +  G      Y  + DVW+ GI   E    G  P+  +     
Sbjct: 221 VVRGNARLPVKWMAPESLFEGI-----YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN 275

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            +++++N    + +    ++     +  C   +   RP    L   
Sbjct: 276 FYKLIQNGFK-MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-34
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 14/182 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           +   ++A +L ++  GM +L E + +HRDL   NVLL      KI DFGLS+      + 
Sbjct: 106 IPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY 165

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
           +  +        W APE +         + +R DVW+ G+T  E L  G+ P++ M    
Sbjct: 166 YTARSAGKWPLKWYAPECINFRK-----FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE 220

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL---LEHPFITSLPEND 173
            +  I +                   +++C     E RP    +   +   + +   + +
Sbjct: 221 VMAFIEQGKRMEC--PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVE 278

Query: 174 LH 175
            H
Sbjct: 279 GH 280

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 4e-34
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 11/172 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFD 59
           ++   +  +  +I  GM F+ E + IHRDLR +N+L++     KI DFGL+R    N + 
Sbjct: 106 LTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRAL 118
            ++       W APE +  G      +  + DVW+ GI   E +  G+ P+  M     +
Sbjct: 166 AREGAKFPIKWTAPEAINYGT-----FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVI 220

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE--HPFITS 168
             + R       R  N  +     +  C ++ PE RP    L      F T+
Sbjct: 221 QNLERGYRM--VRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 4e-34
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 37/203 (18%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE----TAN 56
            +   I  +++ ++ G+ ++H N ++HRD++ +NVL+T+DG +K+ DFGL+R       +
Sbjct: 114 FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 173

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
             ++    + +  +  PE++         Y   ID+W  G    E+    P  +      
Sbjct: 174 QPNRYTNRVVTLWYRPPELLLGER----DYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH 229

Query: 117 ALFQIVR-----------------------------NPPPGLYRASNWSQHYVDFIAECL 147
            L  I +                                    +A     + +D I + L
Sbjct: 230 QLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLL 289

Query: 148 EKNPEHRPYMSELLEHPFITSLP 170
             +P  R    + L H F  S P
Sbjct: 290 VLDPAQRIDSDDALNHDFFWSDP 312

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 7e-34
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 10/167 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
                ++    ++  GM +L     IHRDL   N+LL     VKI DFGL R   +  + 
Sbjct: 108 FLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 167

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTR 116
           +  ++      +W APE ++        + +  D W  G+T  E    G+ P+  ++ ++
Sbjct: 168 YVMQEHRKVPFAWCAPESLKTRT-----FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ 222

Query: 117 ALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            L +I +     L R  +  Q   + + +C    PE RP    L + 
Sbjct: 223 ILHKIDKEGER-LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF 268

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 1e-33
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 20/181 (11%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD-GEVKIVDFGLSRETANTFD 59
           + E+       +++  +   H   V+HRD++  N+L+  + GE+K++DFG      +T  
Sbjct: 107 LQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV- 165

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
               F G+  +  PE +R        +     VW+LGI   ++  G  PFE         
Sbjct: 166 -YTDFDGTRVYSPPEWIRYHR----YHGRSAAVWSLGILLYDMVCGDIPFEHDE------ 214

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS--LPEN--DLH 175
           +I+R     ++     S      I  CL   P  RP   E+  HP++    LP+   ++H
Sbjct: 215 EIIRGQ---VFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIH 271

Query: 176 L 176
           L
Sbjct: 272 L 272

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-33
 Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 35/227 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           +S  HI + L +I+ G+ ++H  +V+HRDL+ SN+LL    ++KI DFGL+R      + 
Sbjct: 106 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 165

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
                 ++ +  + APEIM        GY   ID+W++G    E+   +P F   H    
Sbjct: 166 TGFLTEYVATRWYRAPEIMLNSK----GYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ 221

Query: 118 LFQIVR----------------------------NPPPGLYRASNWSQHYVDFIAECLEK 149
           L  I+                             N  P      N     +D + + L  
Sbjct: 222 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTF 281

Query: 150 NPEHRPYMSELLEHPFITSLPENDLHLSTVNCQYKDQELQTMHVEDL 196
           NP  R  + + L HP++    +             D EL  +  E L
Sbjct: 282 NPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKL 328

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 2e-33
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR-----ETA 55
            +   +  +L+ I  GM +L + + +HRDL   N+L+  +   K+ DFGLSR      + 
Sbjct: 125 FTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD 184

Query: 56  NTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHP 114
            T+           W APE ++        + +  DVW+ GI   E +  G+ P+ DM  
Sbjct: 185 PTYTSALGGKIPIRWTAPEAIQYRK-----FTSASDVWSYGIVMWEVMSYGERPYWDMTN 239

Query: 115 TRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
              +  I ++    L    +        + +C +K+  HRP   +++  
Sbjct: 240 QDVINAIEQDYR--LPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT 286

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 3e-33
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 30/193 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + I  ++ +++ G+ FLH + V+HRDL+  N+L+T  G++K+ DFGL+R   +    
Sbjct: 113 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY-SFQMA 171

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             + + +  + APE++         Y   +D+W++G    E+   KP F        L +
Sbjct: 172 LTSVVVTLWYRAPEVLLQSS-----YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGK 226

Query: 121 IVR------------------------NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY 156
           I+                         +  P     ++  +   D + +CL  NP  R  
Sbjct: 227 ILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS 286

Query: 157 MSELLEHPFITSL 169
               L HP+   L
Sbjct: 287 AYSALSHPYFQDL 299

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 4e-33
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 9/165 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFD 59
            + + +  +  ++  GM +L E  VIHRDL   N L+ ++  +K+ DFG++R    + + 
Sbjct: 98  FAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 157

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRAL 118
                     W +PE+          Y ++ DVW+ G+   E   +GK P+E+   +  +
Sbjct: 158 SSTGTKFPVKWASPEVFSFSR-----YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV 212

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             I        Y+    S H    +  C ++ PE RP  S LL  
Sbjct: 213 EDISTGFRL--YKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 5e-33
 Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 19/218 (8%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE H  F   +I+    +LH   +I+RDL+  N+L+ + G +++ DFG ++       +
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR---VKGR 194

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
             T  G+P  +APEI+        GY+  +D WALG+   E+  G PPF    P +   +
Sbjct: 195 TWTLCGTPEALAPEIILSK-----GYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 249

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY-----MSELLEHPFITSLPENDLH 175
           IV          S++S    D +   L+ +   R       ++++  H +  +     ++
Sbjct: 250 IVSGKVR---FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIY 306

Query: 176 LSTVNCQYKDQELQTMHVEDLAALETISEDNIVQELEE 213
              V   +     +     D +  +   E+ I   + E
Sbjct: 307 QRKVEAPFIP---KFKGPGDTSNFDDYEEEEIRVSINE 341

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 8e-33
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGE----VKIVDFGLSRETAN 56
           ++E+     LK+I+ G+ +LH   + H DL+  N++L         +KI+DFGL+ +   
Sbjct: 110 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 169

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR 116
             ++ K   G+P ++APEI+              D+W++G+    L  G  PF       
Sbjct: 170 G-NEFKNIFGTPEFVAPEIVNYEP-----LGLEADMWSIGVITYILLSGASPFLGDTKQE 223

Query: 117 ALFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL 174
            L  +   N        SN S    DFI   L K+P+ R  + + L+HP+I        
Sbjct: 224 TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQA 282

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  124 bits (311), Expect = 9e-33
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 30/192 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +        L +++ G+ + H+  V+HRDL+  N+L+ ++GE+KI DFGL+R       K
Sbjct: 97  LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK 156

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               + +  + AP+++    K    Y   ID+W++G    E+ +G P F  +     L +
Sbjct: 157 YTHEIVTLWYRAPDVLMGSKK----YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMR 212

Query: 121 IVR--------------------------NPPPGLYRASNWSQHYVDFIAECLEKNPEHR 154
           I R                           P P         +  +D +++ L+ +P  R
Sbjct: 213 IFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQR 272

Query: 155 PYMSELLEHPFI 166
               + LEH + 
Sbjct: 273 ITAKQALEHAYF 284

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-32
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 10/191 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRE-TANTFD 59
            +E  +   + EI+  +  LH+  +I+RD++  N+LL  +G V + DFGLS+E  A+  +
Sbjct: 126 FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE 185

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           +   F G+  +MAP+I+R G     G+D  +D W+LG+   EL  G  PF       +  
Sbjct: 186 RAYDFCGTIEYMAPDIVRGGDS---GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQA 242

Query: 120 QIVRNPPPGLYRA-SNWSQHYVDFIAECLEKNPEHRPYM-----SELLEHPFITSLPEND 173
           +I R             S    D I   L K+P+ R         E+ EH F   +  +D
Sbjct: 243 EISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDD 302

Query: 174 LHLSTVNCQYK 184
           L    V   +K
Sbjct: 303 LAAKKVPAPFK 313

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  123 bits (309), Expect = 1e-32
 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 9/170 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR---ETANT 57
           M+ +    ++ +    + F H+N +IHRD++ +N++++    VK++DFG++R   ++ N+
Sbjct: 108 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 167

Query: 58  FDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             +    +G+  +++PE  R         D R DV++LG    E+  G+PPF    P   
Sbjct: 168 VTQTAAVIGTAQYLSPEQARGDS-----VDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV 222

Query: 118 LFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFI 166
            +Q VR +P P   R    S      + + L KNPE+R   +  +    +
Sbjct: 223 AYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLV 272

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-32
 Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 13/216 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           +  Q++     +I  GM +L +  ++HRDL   NVL+     VKI DFGL++        
Sbjct: 108 IGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKE 167

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIEL-GDGKPPFEDMHPTRA 117
              +       WMA E +         Y ++ DVW+ G+T  EL   G  P++ +     
Sbjct: 168 YHAEGGKVPIKWMALESILHRI-----YTHQSDVWSYGVTVWELMTFGSKPYDGIPA-SE 221

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHP-FITSLPENDLHL 176
           +  I+      L +    +      + +C   + + RP   EL+     +   P+   +L
Sbjct: 222 ISSILEKGER-LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQR--YL 278

Query: 177 STVNCQYKDQELQTMHVEDLAALETISEDNIVQELE 212
                +       T      A ++    D++V   E
Sbjct: 279 VIQGDERMHLPSPTDSNFYRALMDEEDMDDVVDADE 314

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (309), Expect = 2e-32
 Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           +S      I +++  GM +L E   +HRDL   N L+ ++  VKI DFGLSR   +A+ +
Sbjct: 137 LSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY 196

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRA 117
                      WM PE +         Y    DVWA G+   E    G  P+  M     
Sbjct: 197 KADGNDAIPIRWMPPESIFYNR-----YTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV 251

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           ++ +            N      + +  C  K P  RP    +  
Sbjct: 252 IYYVRDGNILAC--PENCPLELYNLMRLCWSKLPADRPSFCSIHR 294

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 4e-32
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 9/164 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S Q +     ++  GM +L +   IHRDL   N+L+ ++   KI DFGLSR     + K
Sbjct: 124 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQ-EVYVK 182

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRALF 119
           K        WMA E +         Y    DVW+ G+   E +  G  P+  M       
Sbjct: 183 KTMGRLPVRWMAIESLNYSV-----YTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYE 237

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           ++ +       +  N      D + +C  + P  RP  +++L  
Sbjct: 238 KLPQGYRL--EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS 279

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  122 bits (308), Expect = 9e-32
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            SE  + F   EII G+  +H   V++RDL+ +N+LL + G V+I D GL+ + +    K
Sbjct: 104 FSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--K 161

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               +G+  +MAPE+++ G      YD+  D ++LG    +L  G  PF           
Sbjct: 162 PHASVGTHGYMAPEVLQKGV----AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 217

Query: 121 IVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM-----SELLEHPFITSLPENDLH 175
                   +    ++S      +   L+++   R         E+ E PF  SL    + 
Sbjct: 218 DRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVF 277

Query: 176 L 176
           L
Sbjct: 278 L 278

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 1e-31
 Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 30/202 (14%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +    I   L +++ G+ F H + V+HRDL+  N+L+  +G +K+ DFGL+R        
Sbjct: 99  IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT 158

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               + +  + APEI+         Y   +D+W+LG    E+   +  F        LF+
Sbjct: 159 YTHEVVTLWYRAPEILLGCKY----YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 214

Query: 121 IVRN---PPPGLYRASNWSQHY-----------------------VDFIAECLEKNPEHR 154
           I R    P   ++        Y                          +++ L  +P  R
Sbjct: 215 IFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKR 274

Query: 155 PYMSELLEHPFITSLPENDLHL 176
                 L HPF   + +   HL
Sbjct: 275 ISAKAALAHPFFQDVTKPVPHL 296

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 8e-31
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 9/165 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +    +     ++ T + +L     +HRD+   NVL++ +  VK+ DFGLSR   ++   
Sbjct: 105 LDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY 164

Query: 61  KKT-FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRAL 118
           K +       WMAPE +         + +  DVW  G+   E L  G  PF+ +     +
Sbjct: 165 KASKGKLPIKWMAPESINFRR-----FTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVI 219

Query: 119 FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
            +I       +    N        + +C   +P  RP  +EL   
Sbjct: 220 GRIENGERLPM--PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 9e-31
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETAN--TF 58
           ++ +H+     ++  GM FL     IHRDL   N+LL++   VKI DFGL+R+      +
Sbjct: 131 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY 190

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRA 117
            +K        WMAPE +         Y  + DVW+ G+   E+      P+  +     
Sbjct: 191 VRKGDARLPLKWMAPETIFDRV-----YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE 245

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
             + ++     +      +      + +C    P  RP  SEL+EH
Sbjct: 246 FCRRLKEGTR-MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 290

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-30
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
            S   +  +L+ I  GM +L   + +HRDL   N+L+  +   K+ DFGLSR   +  + 
Sbjct: 107 FSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 166

Query: 61  KKTF---LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRA 117
             T         W APE +         + +  DVW+ GI   E+               
Sbjct: 167 TYTTSGGKIPIRWTAPEAISYRK-----FTSASDVWSFGIVMWEVMTYGERPYWELSNHE 221

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           + + + +    L    +        + +C ++    RP  ++++ 
Sbjct: 222 VMKAINDGFR-LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS 265

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (293), Expect = 3e-30
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 7/163 (4%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S   + ++  +I + M +L + + IHRDL   N L+ ++  VK+ DFGLSR        
Sbjct: 112 VSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 171

Query: 61  KKTF-LGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
                     W APE +         +  + DVWA G+   E+               ++
Sbjct: 172 AHAGAKFPIKWTAPESLAYNK-----FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY 226

Query: 120 QIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           +++      + R     +   + +  C + NP  RP  +E+ +
Sbjct: 227 ELLEKDYR-MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 4e-30
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 37/223 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEV-KIVDFGLSRETANTFD 59
           +   ++   + ++   + ++H   + HRD++  N+LL  D  V K+ DFG +++     +
Sbjct: 119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-E 177

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
              +++ S  + APE++         Y + IDVW+ G    EL  G+P F        L 
Sbjct: 178 PNVSYICSRYYRAPELIFGAT----DYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233

Query: 120 QIVR--------------------------NPPPGLYRASNWSQHYVDFIAECLEKNPEH 153
           +I++                            P             +   +  LE  P  
Sbjct: 234 EIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTA 293

Query: 154 RPYMSELLEHPFITSLPENDLHLSTVNC-----QYKDQELQTM 191
           R    E   H F   L + ++ L           +  QEL + 
Sbjct: 294 RLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSN 336

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 8e-30
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +S + +     ++  GM +L     IHRDL   NVL+T+D  +KI DFGL+R+  +    
Sbjct: 132 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY 191

Query: 61  KKT--FLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRA 117
           KKT        WMAPE +         Y ++ DVW+ G+   E    G  P+  + P   
Sbjct: 192 KKTTNGRLPVKWMAPEALFDRI-----YTHQSDVWSFGVLLWEIFTLGGSPYPGV-PVEE 245

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           LF++++     + + SN +      + +C    P  RP   +L+E 
Sbjct: 246 LFKLLKEGHR-MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED 290

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 3e-29
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 12/168 (7%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR----ETAN 56
            + + +     ++  GM FL     +HRDL   N +L +   VK+ DFGL+R    +  +
Sbjct: 127 PTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD 186

Query: 57  TFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPT 115
           +   K        WMA E ++        +  + DVW+ G+   E +  G PP+ D++  
Sbjct: 187 SVHNKTGAKLPVKWMALESLQTQK-----FTTKSDVWSFGVLLWELMTRGAPPYPDVNTF 241

Query: 116 RALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
                +++       +         + + +C     E RP  SEL+  
Sbjct: 242 DITVYLLQGRRL--LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR 287

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (281), Expect = 1e-28
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG---EVKIVDFGLSR----- 52
            S + +  +  ++I+ + ++H  + IHRD++  N L+        V I+DFGL++     
Sbjct: 100 FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 159

Query: 53  --ETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE 110
                  + + K   G+  + +                R D+ +LG   +    G  P++
Sbjct: 160 RTHQHIPYRENKNLTGTARYASINTHLGIE-----QSRRDDLESLGYVLMYFNLGSLPWQ 214

Query: 111 DMHPTRALFQIVRN-----PPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS---ELLE 162
            +       +  R        P       +   +  ++  C     + +P  S   +L  
Sbjct: 215 GLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 274

Query: 163 HPFITSLPEND 173
           + F       D
Sbjct: 275 NLFHRQGFSYD 285

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 4e-28
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 10/166 (6%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRET--ANTF 58
            S   +  +  EI  GM +L+ N  +HRDL   N ++ +D  VKI DFG++R+    + +
Sbjct: 130 PSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY 189

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRA 117
            K    L    WM+PE ++ G      +    DVW+ G+   E     + P++ +   + 
Sbjct: 190 RKGGKGLLPVRWMSPESLKDGV-----FTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQV 244

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEH 163
           L  ++        +  N      + +  C + NP+ RP   E++  
Sbjct: 245 LRFVMEGGLLD--KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS 288

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 6e-28
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 9/165 (5%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSR--ETANTF 58
           +  + +     ++  GM FL   + IHRDL   N+LLT     KI DFGL+R  +  + +
Sbjct: 142 LDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 59  DKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIE-LGDGKPPFEDMHPTRA 117
             K        WMAPE +         Y    DVW+ GI   E    G  P+  M     
Sbjct: 202 VVKGNARLPVKWMAPESIFNCV-----YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK 256

Query: 118 LFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
            +++++     L    +      D +  C + +P  RP   ++++
Sbjct: 257 FYKMIKEGFRMLSP-EHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 300

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 1e-27
 Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 35/201 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           + E  I F++ +++ G+ ++H   +IHRDL+  N+ + +D E+KI+DFGL+R+  +    
Sbjct: 118 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM-- 175

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              ++ +  + APE++    +    Y   +D+W++G    E+  GK  F+       L +
Sbjct: 176 -TGYVVTRWYRAPEVILNWMR----YTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKE 230

Query: 121 IVR---NPPPGLYRA-------------------------SNWSQHYVDFIAECLEKNPE 152
           I++    PP    +                          +N S   V+ + + L  + E
Sbjct: 231 IMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAE 290

Query: 153 HRPYMSELLEHPFITSLPEND 173
            R    E L HP+  SL + +
Sbjct: 291 QRVTAGEALAHPYFESLHDTE 311

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 2e-27
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 31/197 (15%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + +   L +++ G+ F H  +V+HRDL+  N+L+ ++GE+K+ +FGL+R        
Sbjct: 98  LDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC 157

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
               + +  +  P+++         Y   ID+W+ G    EL +   P    +      +
Sbjct: 158 YSAEVVTLWYRPPDVLFGAKL----YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLK 213

Query: 121 IVRN---------------------------PPPGLYRASNWSQHYVDFIAECLEKNPEH 153
            +                                 +      +    D +   L+ NP  
Sbjct: 214 RIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQ 273

Query: 154 RPYMSELLEHPFITSLP 170
           R    E L+HP+ +   
Sbjct: 274 RISAEEALQHPYFSDFC 290

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  108 bits (270), Expect = 5e-27
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-----DGEVKIVDFGLSRETA 55
            S + +A   K+++  +  +HE  +++RD++  N L+ +        + +VDFG+ +   
Sbjct: 98  FSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 157

Query: 56  NTFDKK-------KTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPP 108
           +   K+       K   G+  +M+                R D+ ALG   +    G  P
Sbjct: 158 DPVTKQHIPYREKKNLSGTARYMSINTHLGR-----EQSRRDDLEALGHVFMYFLRGSLP 212

Query: 109 FEDMHPTRALFQIVR-----NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLE 162
           ++ +       +  R        P     + + + +  ++        +  P    L  
Sbjct: 213 WQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG 271

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 5e-27
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 1   MSEQHIAFILKEIITGMVFLHE--------NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR 52
           ++ + +  +     +G+  LH           + HRDL+  N+L+ K+G   I D GL+ 
Sbjct: 97  VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156

Query: 53  ----ETANTFDKKKTFLGSPSWMAPEIMRCGHKEVDG-YDNRIDVWALGITAIELGDGKP 107
                T          +G+  +MAPE++             R D++A+G+   E+     
Sbjct: 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS 216

Query: 108 PFEDMHPTRALF-------------------QIVRNPPPGLYRASNWSQHYVDFIAECLE 148
                   +  +                   Q +R   P  +++    +     + EC  
Sbjct: 217 IGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 276

Query: 149 KNPEHRPYMSELLE 162
            N   R     + +
Sbjct: 277 ANGAARLTALRIKK 290

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  104 bits (261), Expect = 1e-25
 Identities = 37/208 (17%), Positives = 80/208 (38%), Gaps = 41/208 (19%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFD 59
           +++  I F + EI+  + + H   ++HRD++  NV++  +  +++++D+GL+        
Sbjct: 126 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-Q 184

Query: 60  KKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALF 119
           +    + S  +  PE++         YD  +D+W+LG     +   K PF   H      
Sbjct: 185 EYNVRVASRYFKGPELLVDYQ----MYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQL 240

Query: 120 QIV--------------------------------RNPPPGLYRASNW---SQHYVDFIA 144
             +                                R        + N    S   +DF+ 
Sbjct: 241 VRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLD 300

Query: 145 ECLEKNPEHRPYMSELLEHPFITSLPEN 172
           + L  + + R    E +EHP+  ++ ++
Sbjct: 301 KLLRYDHQSRLTAREAMEHPYFYTVVKD 328

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-24
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 45/210 (21%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  + ++++L +++ G+  LH   +IHRDL+ SN+++  D  +KI+DFGL+R    +   
Sbjct: 116 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FM 174

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              ++ +  + APE++        GY   +D+W++G    E+   K  F          +
Sbjct: 175 MTPYVVTRYYRAPEVILG-----MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNK 229

Query: 121 IVRN---PPPGLYRASNW------------------------------------SQHYVD 141
           ++     P P   +                                        +    D
Sbjct: 230 VIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARD 289

Query: 142 FIAECLEKNPEHRPYMSELLEHPFITSLPE 171
            +++ L  +P  R  + + L+HP+I    +
Sbjct: 290 LLSKMLVIDPAKRISVDDALQHPYINVWYD 319

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-24
 Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 35/201 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +++ H+ F++ +I+ G+ ++H   +IHRDL+ SN+ + +D E+KI+DFGL+R T +    
Sbjct: 118 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEM-- 175

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQ 120
              ++ +  + APEIM         Y+  +D+W++G    EL  G+  F        L  
Sbjct: 176 -TGYVATRWYRAPEIMLNWMH----YNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL 230

Query: 121 IVR---NPPPGLYRA-------------------------SNWSQHYVDFIAECLEKNPE 152
           I+R    P   L +                             +   VD + + L  + +
Sbjct: 231 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSD 290

Query: 153 HRPYMSELLEHPFITSLPEND 173
            R   ++ L H +     + D
Sbjct: 291 KRITAAQALAHAYFAQYHDPD 311

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 1e-17
 Identities = 35/225 (15%), Positives = 77/225 (34%), Gaps = 60/225 (26%)

Query: 1   MSEQHIAFILKEIITGMVFLHENH-VIHRDLRGSNVLLTKDG------EVKIVDFGLSRE 53
           +   ++  I K+++ G+ ++H    +IH D++  NVL+          ++KI D G +  
Sbjct: 122 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACW 181

Query: 54  TANTFDKKKTFLGSPSWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFE--- 110
                +     + +  + +PE++         +    D+W+      EL  G   FE   
Sbjct: 182 Y---DEHYTNSIQTREYRSPEVLLGAP-----WGCGADIWSTACLIFELITGDFLFEPDE 233

Query: 111 ------DMHPTRALFQIVRNPPPGLYRASNWSQHY------------------------- 139
                 D      + +++   P  L R   +++ +                         
Sbjct: 234 GHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEK 293

Query: 140 -----------VDFIAECLEKNPEHRPYMSELLEHPFITSLPEND 173
                       DF++  L+ +P  R     L+ HP++      +
Sbjct: 294 YKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGME 338

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 1   MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDK 60
           +  ++   +L  I+  +   +   ++H DL   NVL++++G + I+DF  S E       
Sbjct: 100 VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEE--- 155

Query: 61  KKTFLGSPSWMAPEIMRCGHKEVDGYDNR-----IDVWALGITAIE 101
                        EI+    + +  Y +R      D+ +     ++
Sbjct: 156 ----------GWREILERDVRNIITYFSRTYRTEKDINSAIDRILQ 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	100.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	100.0
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	100.0
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.98
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.98
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.98
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.98
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.98
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.98
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.98
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.98
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.97
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.97
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.97
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.97
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.97
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.96
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.96
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.96
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.95
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.3
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	98.06
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	97.99
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	97.58
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	97.45
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	97.4
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	97.33
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	97.32
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	97.24
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	97.22
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	97.19
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	97.13
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	97.11
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	97.08
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	97.06
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	97.02
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	97.0
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	96.99
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	96.98
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	96.94
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	96.93
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	96.89
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	96.85
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	96.8
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	96.79
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	96.79
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	96.72
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	96.72
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	96.71
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	96.61
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	96.61
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	96.58
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	96.56
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	96.55
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	96.55
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	96.54
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	96.51
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	96.5
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	96.46
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	96.42
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	96.38
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	96.35
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	96.35
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	96.29
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	96.19
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	96.17
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	96.15
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	96.11
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	96.11
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	95.72
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	95.71
d1cb1a_	78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	95.66
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	95.45
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	95.23
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	95.1
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	94.89
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	94.75
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	94.55
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	94.3
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	94.26
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	94.21
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	94.18
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	94.14
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	94.12
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	93.6
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	93.59
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	93.44
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	92.98
d1psra_	100	Calcyclin (S100) {Human (Homo sapiens), psoriasin	92.9
d1qlsa_	95	Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s1	92.41
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	92.07
d3cr5x1	90	Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId:	91.84
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.0
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	90.98
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	90.8
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	90.7
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	90.57
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	89.82
d1xk4c1	83	Calcyclin (S100) {Human (Homo sapiens), s100a9 (mr	89.79
d1j55a_	94	Calcyclin (S100) {Human (Homo sapiens), s100p [Tax	89.6
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	88.99
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	88.84
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	88.04
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	88.03
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	86.71
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	86.3
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	85.39
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	84.64
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	84.64
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	84.15
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	84.06
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	83.09
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	83.08
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	82.88
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	82.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	82.12
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	81.69
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	81.56
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	81.25
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	80.89
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	80.75
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	80.56
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	80.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	80.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	80.06

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=4.5e-77  Score=640.66  Aligned_cols=285  Identities=27%  Similarity=0.433  Sum_probs=266.6

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++.+|+.||..+.+|||+|+++++|||++.+++|.++++..|.++.....|||+|++|++||+.|
T Consensus        40 ~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m  119 (712)
T d1d0xa2          40 GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSM  119 (712)
T ss_dssp             TCSBGGGCSSCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             CCchhhcCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC-----CCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEE
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ-----GAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVT  346 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~-----g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~  346 (488)
                      ++.+++|+|||||||||||||++|.||+|++..+.     +...+++.|++++|+|||||||||+|||||||||||++|+
T Consensus       120 ~~~~~nQsIiisGeSGaGKTe~~k~il~yL~~~s~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~l~  199 (712)
T d1d0xa2         120 LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQ  199 (712)
T ss_dssp             HHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEE
T ss_pred             HHhCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhCCCcccccchHHHHHHhhhhHHHHhcCcCcCCCCCccceeEEEEEE
Confidence            99999999999999999999999999999998754     3456999999999999999999999999999999999999


Q ss_pred             ECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCC
Q psy9090         347 FGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETP  426 (488)
Q Consensus       347 ~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~  426 (488)
                      |+..|.|+||+|.+|||||||||. |.+||||||||||||+|++. ++++.+.|.++..|+||+++.+       ...++
T Consensus       200 f~~~g~i~ga~i~~yLLEksRvv~-~~~gErnfHIFYqll~g~~~-~~~~~~~l~~~~~~~yL~~~~~-------~~~~~  270 (712)
T d1d0xa2         200 FNNAGFISGASIQSYLLEKSRVVF-QSETERNYHIFYQLLAGATA-EEKKALHLAGPESFNYLNQSGC-------VDIKG  270 (712)
T ss_dssp             ECTTSCEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHHHHSCH-HHHHHHTCCCGGGCTTTSSSSC-------CCCTT
T ss_pred             EcCCCccccceeEEeccCCceEEe-eccccccHHHHHHHHhCCCH-HHHHHhCCCCchhcccccCCCC-------cccCC
Confidence            999999999999999999999995 99999999999999999987 5678889999999999987743       23567


Q ss_pred             CccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecCCcccccCChhhhc
Q psy9090         427 DTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSAENTAELANPEVAA  485 (488)
Q Consensus       427 ~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~~~~~~~~~~~~~~  485 (488)
                      .+|+++|+++++||+.|||+++|+..||+|||||||||||+|.+.+.+.+.+.+++.++
T Consensus       271 ~dd~~~f~~~~~al~~lgfs~~e~~~i~~iLaaILhLGNi~F~~~~~~~~~i~~~~~l~  329 (712)
T d1d0xa2         271 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALN  329 (712)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCBCCSSSSCBCSCCHHHH
T ss_pred             cChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCcceecCCHHHHH
Confidence            88999999999999999999999999999999999999999988777788888876654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=6.5e-75  Score=631.72  Aligned_cols=283  Identities=28%  Similarity=0.429  Sum_probs=258.2

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++++|+.||..+.+|||+|+++++|||++.+++|.++.+..|.++...+.|||+|+||++||+.|
T Consensus        36 ~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~m  115 (789)
T d1kk8a2          36 KLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNM  115 (789)
T ss_dssp             TCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             CcchhccCCCCCHHHHHHHHHHHHcCCCceEeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC------------CchhhhHhhhcchhhhhhhccccCCCCCCCcc
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG------------AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRH  339 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g------------~~~~~e~i~~~~~~leafgna~t~~n~nssrf  339 (488)
                      ...+++|||+|||||||||||++|.||+|++..+.+            ..++++.|+.+||+|||||||||++|||||||
T Consensus       116 ~~~~~nQ~IiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRF  195 (789)
T d1kk8a2         116 VTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRF  195 (789)
T ss_dssp             HHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESS
T ss_pred             HHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHHhHHHHhccccCCCCCCccCCc
Confidence            999999999999999999999999999999987643            24589999999999999999999999999999


Q ss_pred             ceeEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccC-CCCCCCcccccCccCCCC
Q psy9090         340 VLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFL-SPGRKYRYLRADVTDDKL  418 (488)
Q Consensus       340 gk~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l-~~~~~~~yl~~~~~~~~~  418 (488)
                      |||++|+|+..|.|+||+|.+|||||||||. |.+||||||||||||+|++++ ++..+.+ ..+..|.|++++.     
T Consensus       196 Gk~~~l~f~~~g~i~ga~i~~yLLEksRvv~-~~~gErnfHIFY~ll~G~~~~-~~~~~~l~~~~~~~~~l~~~~-----  268 (789)
T d1kk8a2         196 GKFIRIHFGPTGKIAGADIETYLLEKSRVTY-QQSAERNYHIFYQICSNAIPE-LNDVMLVTPDSGLYSFINQGC-----  268 (789)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHTSCSSGG-GHHHHTCCSCGGGCTTTCSSC-----
T ss_pred             ceeEEEEECCCCCCccceeEEecCCCceeee-cccccchhHHHHHHHcCCCHH-HHHHhCCCCchhhhHhhcCCC-----
Confidence            9999999999999999999999999999995 999999999999999999874 4556665 4567899997652     


Q ss_pred             CCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhh
Q psy9090         419 PKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVA  484 (488)
Q Consensus       419 ~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~  484 (488)
                         ...++.+|+++|+++..||+.|||+++|++.||+|||||||||||+|.+.+ ++.+.+.+.+.+
T Consensus       269 ---~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~~  332 (789)
T d1kk8a2         269 ---LTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEA  332 (789)
T ss_dssp             ---SCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHH
T ss_pred             ---cccCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccceeeccCCccccccCChHHH
Confidence               235778999999999999999999999999999999999999999998654 556777776554

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=5.2e-75  Score=632.93  Aligned_cols=284  Identities=27%  Similarity=0.434  Sum_probs=262.3

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++++|+.||..+.+|||+|+++++|||++.+++|.++++..|.++...+.|||+|+||++||+.|
T Consensus        38 ~veDl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m  117 (794)
T d2mysa2          38 KIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFM  117 (794)
T ss_dssp             SCSBGGGCSCCCHHHHHHHHHHTTTTTCCEEECSSCEEEECCSSCCGGGCTTHHHHTTTCCTTSSCSCHHHHHHHHHHHH
T ss_pred             CcchhcCCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC------------CchhhhHhhhcchhhhhhhccccCCCCCCCcc
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG------------AAKVGEKIEKCVNVIHAIGNAGTPINQNSTRH  339 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g------------~~~~~e~i~~~~~~leafgna~t~~n~nssrf  339 (488)
                      .+.+++|+|||||||||||||++|.||+|++..+.+            ..++++.|..++|||||||||||++|||||||
T Consensus       118 ~~~~~~QsIiisGeSGaGKTe~~K~il~yL~~~~~~~~~~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRF  197 (794)
T d2mysa2         118 LTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRF  197 (794)
T ss_dssp             HHHTCCEEEEEEECTTSCHHHHHHHHHHHHHHHTCCCC-----------CCHHHHHHHHHHHHHHHHEECCSSCSSEECS
T ss_pred             HHcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccccCcHHHHHHHhhhHHHHhcCCcccccCChhhh
Confidence            999999999999999999999999999999987532            24689999999999999999999999999999


Q ss_pred             ceeEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccC-CCCCCCcccccCccCCCC
Q psy9090         340 VLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFL-SPGRKYRYLRADVTDDKL  418 (488)
Q Consensus       340 gk~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l-~~~~~~~yl~~~~~~~~~  418 (488)
                      |||++|+|+..|.|+||+|.+|||||||||. |.+||||||||||||+|+++ ++++.+.+ .++..|+||+++..    
T Consensus       198 gk~~~l~f~~~g~i~ga~i~~ylLEksRv~~-~~~gErnfHIFYqll~g~~~-~~~~~~~l~~~~~~y~yl~~~~~----  271 (794)
T d2mysa2         198 GKFIRIHFGATGKLASADIETYLLEKSRVTF-QLPAERSYHIFYQIMSNKKP-ELIDMLLITTNPYDYHYVSEGEI----  271 (794)
T ss_dssp             EEEEEEEECSSSSEEECCEEEECCCGGGGTC-CCTTCCCBHHHHHHTTCSSH-HHHHHHTCCSCGGGCGGGCSSCC----
T ss_pred             heeeeeEECCCCCEeeEEEEEEecCCceEEe-cCcccccHHHHHHHHcCCCH-HHHHHhccCCCHHHhhhcCCCCc----
Confidence            9999999999999999999999999999995 99999999999999999977 45666766 57899999987522    


Q ss_pred             CCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhhc
Q psy9090         419 PKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVAA  485 (488)
Q Consensus       419 ~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~~  485 (488)
                          ..++.+|+++|+.+..||+.|||+++|+..||+|||||||||||+|.+.+ ++.+++.+.+.++
T Consensus       272 ----~~~~~~d~~~f~~~~~al~~lg~s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~  335 (794)
T d2mysa2         272 ----TVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVAD  335 (794)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSCCEEESCSSHHH
T ss_pred             ----ccCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccceeEeecCCcccccccchHHHH
Confidence                35678899999999999999999999999999999999999999998765 5567777776554

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=1.4e-74  Score=624.03  Aligned_cols=283  Identities=28%  Similarity=0.458  Sum_probs=258.6

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDM  271 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~  271 (488)
                      .++|+..+..++|+.++++|+.||..+.+|||+|+++++|||++.+++|.++++..|.++.....|||+|+||++||+.|
T Consensus         6 ~veDl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m   85 (710)
T d1br2a2           6 KVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM   85 (710)
T ss_dssp             TCSBTTSCSSCSHHHHHHHHHHHHHTTCCEEECSSSEEEECCSSCCTTCCHHHHHHTTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             cCchhhcCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC----------------CchhhhHhhhcchhhhhhhccccCCCCC
Q psy9090         272 MHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG----------------AAKVGEKIEKCVNVIHAIGNAGTPINQN  335 (488)
Q Consensus       272 ~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g----------------~~~~~e~i~~~~~~leafgna~t~~n~n  335 (488)
                      .+.+++|+|||||||||||||++|.||+|++..+.+                ..+++++|..++|+|||||||||++|+|
T Consensus        86 ~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~n~iLeaFGnakT~~N~N  165 (710)
T d1br2a2          86 LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDN  165 (710)
T ss_dssp             HHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC------------------CHHHHHHTTHHHHHHHHHEECCSSCTT
T ss_pred             HHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCccccccccccccccchHHHHHHHHHHHHHHhCCCccCCCCC
Confidence            999999999999999999999999999999976532                1358999999999999999999999999


Q ss_pred             CCccceeEEEEECCCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccC
Q psy9090         336 STRHVLYMQVTFGSSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTD  415 (488)
Q Consensus       336 ssrfgk~~~~~~~~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~  415 (488)
                      |||||||++|+||..|.|+||+|.+|||||||||. |.+||||||||||||+|++. +++..++|.++.+|+||+++.. 
T Consensus       166 SSRfgk~~~l~f~~~g~i~ga~i~~ylLEksRv~~-~~~~ErnfHIFY~ll~G~~~-~~~~~l~l~~~~~y~yL~~~~~-  242 (710)
T d1br2a2         166 SSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIR-QAKDERTFHIFYYLIAGASE-QMRNDLLLEGFNNYTFLSNGHV-  242 (710)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTC-CCTTCCCBHHHHHHHHHCCH-HHHTTTTCCCTTTCTTSTTSCC-
T ss_pred             CCCcceeeeeEEcCCCcEEEEEEEEecccCceeeE-ecCCCCcceeHHHHHcCCCH-HHHHhhhcCChhhceeccCCCc-
Confidence            99999999999999999999999999999999996 99999999999999999986 5678888999999999987532 


Q ss_pred             CCCCCCCCCCCCccHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhh
Q psy9090         416 DKLPKGPRETPDTNVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVA  484 (488)
Q Consensus       416 ~~~~~~~~~~~~~d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~  484 (488)
                             ..++.+|+++|+++.+||..|||+++++..||+|||||||||||+|+... ++.+...+++.+
T Consensus       243 -------~~~~~~d~~~f~~l~~Al~~lGf~~~e~~~i~~vlaaILhLGni~F~~~~~~~~~~~~~~~~~  305 (710)
T d1br2a2         243 -------PIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAA  305 (710)
T ss_dssp             -------CCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCBCC----CCBCSCCHHH
T ss_pred             -------ccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeeeeccccccccccChHHH
Confidence                   25677899999999999999999999999999999999999999997654 444555555443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=100.00  E-value=1.9e-73  Score=612.11  Aligned_cols=285  Identities=29%  Similarity=0.480  Sum_probs=259.5

Q ss_pred             hhhhhhhhccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHH
Q psy9090         193 VEDLAALETISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMM  272 (488)
Q Consensus       193 v~dl~~l~~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~  272 (488)
                      ++|+..|..++++.+++.|+.||..+.+||++|+++++|||++.+++|.++++..|.++...+.|||+|+||++||+.|.
T Consensus         2 v~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l~   81 (684)
T d1lkxa_           2 VPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMR   81 (684)
T ss_dssp             CSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             hcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCc----hhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEEC
Q psy9090         273 HHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAA----KVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFG  348 (488)
Q Consensus       273 ~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~----~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~  348 (488)
                      +.+++|+|+|||||||||||++|.||+|++..+.+..    ++++.|..++|+|||||||||++|+||||||||++|+|+
T Consensus        82 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~s~~~~~~~~~i~~~i~~~n~iLeaFGNAkT~~N~NSSRfgk~~~l~f~  161 (684)
T d1lkxa_          82 QSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFN  161 (684)
T ss_dssp             HHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEEC
T ss_pred             HcCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCCCccchHHHHHHhhhhhhhhcccccccCCCCcCceeeEEEEEec
Confidence            9999999999999999999999999999998876543    489999999999999999999999999999999999999


Q ss_pred             CCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCc
Q psy9090         349 SSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT  428 (488)
Q Consensus       349 ~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~  428 (488)
                      ..|.|+||+|.+|||||||||. |.+|||||||||||++|++.+++.+.+.+.++..|+||+++.+       ...++.+
T Consensus       162 ~~g~i~ga~i~~ylLEksRv~~-~~~gErnfHIFYqll~g~~~~~~~~l~~~~~~~~y~~l~~~~~-------~~~~~~d  233 (684)
T d1lkxa_         162 AVGSPIGGKITNYLLEKSRVVG-RTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGC-------FDVSTID  233 (684)
T ss_dssp             TTCCEEEEEEEEECCCGGGGTC-CCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTC-------CCCTTCC
T ss_pred             CCCcEeeEEEEEeeeccccccc-ccccccchhhHHHHHhCCCHHHHHhhccCCccchhhhhcCCCC-------ccCCCcC
Confidence            9999999999999999999995 9999999999999999998754433345678899999987643       2356788


Q ss_pred             cHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-----CcccccCChhhhc
Q psy9090         429 NVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-----ENTAELANPEVAA  485 (488)
Q Consensus       429 d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-----~~~~~~~~~~~~~  485 (488)
                      |+++|+++..||+.|||+++|+..||+|||||||||||+|....     .+.+++.+++.++
T Consensus       234 d~~~f~~l~~al~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~~~~~l~  295 (684)
T d1lkxa_         234 DSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLA  295 (684)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeeccccccCcceeecCCHHHHH
Confidence            99999999999999999999999999999999999999997543     3345666665543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=100.00  E-value=4.5e-73  Score=615.29  Aligned_cols=284  Identities=30%  Similarity=0.416  Sum_probs=261.4

Q ss_pred             hhhhhhhhhccchhhHHHHHHhhhc-cCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHH
Q psy9090         192 HVEDLAALETISEDNIVQELEERHN-SKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQD  270 (488)
Q Consensus       192 ~v~dl~~l~~l~e~~l~~~L~~r~~-~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~  270 (488)
                      .++|+..+..++++.++++|+.||. .+.+||++|+++++|||++.+++|.++.+..|.++...+.|||+|+||++||+.
T Consensus         8 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~~iYT~~G~iLiaiNP~~~~~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~   87 (730)
T d1w7ja2           8 GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQ   87 (730)
T ss_dssp             TCSSSTTCSCCSHHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             CcchhhcCCCCCHHHHHHHHHHHhccCCceeeeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHH
Confidence            4789999999999999999999996 566999999999999999999999999999999999899999999999999999


Q ss_pred             HHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC--CCchhhhHhhhcchhhhhhhccccCCCCCCCccceeEEEEEC
Q psy9090         271 MMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ--GAAKVGEKIEKCVNVIHAIGNAGTPINQNSTRHVLYMQVTFG  348 (488)
Q Consensus       271 ~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~--g~~~~~e~i~~~~~~leafgna~t~~n~nssrfgk~~~~~~~  348 (488)
                      |...+++|+|+|||||||||||++|.||+|++..+.  ....+++.|..++|||||||||||++||||||||||++|+|+
T Consensus        88 l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~~~s~~~~~~~~~~~i~~~n~ileaFGnAkT~~N~NSSRfgk~~~l~f~  167 (730)
T d1w7ja2          88 MARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFD  167 (730)
T ss_dssp             HHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEEC
T ss_pred             HHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhcccccCCCCCcccceeeeeeeec
Confidence            999999999999999999999999999999998754  356799999999999999999999999999999999999999


Q ss_pred             CCCceeceEEeeeecccceecccCCCCCcchHHHHHHHhhcchhhhhhhccCCCCCCCcccccCccCCCCCCCCCCCCCc
Q psy9090         349 SSGKLSGAIFWLYQLEKWRVTGNRDPLQANFHIFYYFYDAMEAAGELDKYFLSPGRKYRYLRADVTDDKLPKGPRETPDT  428 (488)
Q Consensus       349 ~~~~~~~~~~~~yllek~rv~~~~~~~ernfHiFY~l~~g~~~~~~~~~~~l~~~~~~~yl~~~~~~~~~~~~~~~~~~~  428 (488)
                      ..|.|+||+|.+|||||||||. |.+||||||||||||+|++. ++++.+.+.++..|+||+++.+       ...++.+
T Consensus       168 ~~g~i~ga~i~~ylLEksRv~~-~~~~ErnfHIFY~ll~g~~~-~~~~~l~l~~~~~~~yl~~~~~-------~~~~~~~  238 (730)
T d1w7ja2         168 KRYRIIGANMRTYLLEKSRVVF-QAEEERNYHIFYQLCASAAL-PEFKTLRLGNANYFHYTKQGGS-------PVIDGID  238 (730)
T ss_dssp             TTSCEEEEEEEEECCCGGGGTC-CCTTCCSBHHHHHHHHTTTS-GGGGGGCCCCTTTSHHHHTTSC-------CCCTTCC
T ss_pred             CCCCEEEEEEEEccccccceee-ecCCCCcchhHHHHHcCCCH-HHHHHhCCCChhhhhhhccCCC-------ceeCCcc
Confidence            9999999999999999999996 99999999999999999976 5677888999999999987632       2367888


Q ss_pred             cHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCceEeecC-CcccccCChhhh
Q psy9090         429 NVAKFQEIYQNLIDIEFDDIQMEIFSNVLAAILLIGEVEFESSA-ENTAELANPEVA  484 (488)
Q Consensus       429 d~~~~~~~~~a~~~lgf~~~~~~~i~~ilaaiLhlGni~F~~~~-~~~~~~~~~~~~  484 (488)
                      |+++|+++.+||+.|||+++|+..||+|||||||||||+|.+.+ ++.+.+.+.+.+
T Consensus       239 d~~~f~~~~~al~~lG~~~ee~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~l  295 (730)
T d1w7ja2         239 DAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPL  295 (730)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHH
T ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHheeceeEEEecCCcceeecCCHHHH
Confidence            99999999999999999999999999999999999999998765 444555555544

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=316.99  Aligned_cols=163  Identities=40%  Similarity=0.776  Sum_probs=147.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++............+||+.|+|||++.+  
T Consensus       113 l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~--  190 (293)
T d1yhwa1         113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR--  190 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSS--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcC--
Confidence            689999999999999999999999999999999999999999999999999877655455567789999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++|||||||++|+|++|.+||.+.+....+..+.....+....+..+|+.+++||.+||.+||.+|||++|+
T Consensus       191 ---~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  267 (293)
T d1yhwa1         191 ---KAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (293)
T ss_dssp             ---SCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             ---CCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence               67899999999999999999999999998888877777776656555667789999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |+||||+.
T Consensus       268 l~Hp~~~~  275 (293)
T d1yhwa1         268 LQHQFLKI  275 (293)
T ss_dssp             TTCGGGGG
T ss_pred             hcCHhhCC
Confidence            99999974

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=316.43  Aligned_cols=168  Identities=41%  Similarity=0.880  Sum_probs=150.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++..........+..||+.|+|||++....
T Consensus       107 l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~  186 (288)
T d2jfla1         107 LTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCET  186 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcc
Confidence            68999999999999999999999999999999999999999999999999976654434445678999999999997644


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                      .....|+.++|||||||++|+|++|++||.+.+..+.+.++.....+....+..+|+++++||.+||+.||++|||++++
T Consensus       187 ~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~el  266 (288)
T d2jfla1         187 SKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQL  266 (288)
T ss_dssp             TTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             cCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            44467899999999999999999999999998888888888887766666677899999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      ++||||+.
T Consensus       267 l~hp~~~~  274 (288)
T d2jfla1         267 LQHPFVTV  274 (288)
T ss_dssp             TTSGGGCC
T ss_pred             hcCcccCC
Confidence            99999974

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=319.80  Aligned_cols=177  Identities=30%  Similarity=0.516  Sum_probs=155.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      ++|+.++.+++||+.||+|||++|||||||||+|||++.+|.+||+|||+++............+||+.|+|||++.+  
T Consensus       102 ~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~--  179 (337)
T d1o6la_         102 FTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED--  179 (337)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSS--
T ss_pred             CcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccC--
Confidence            589999999999999999999999999999999999999999999999999876554455667899999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         .+|+.++|||||||++|+|++|++||.+.+.......+.....   ..|..+|+++++||.+||++||.+|++    
T Consensus       180 ---~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~  253 (337)
T d1o6la_         180 ---NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEI---RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPS  253 (337)
T ss_dssp             ---SCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             ---CCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCC---CCCccCCHHHHHHHHhhccCCchhhcccccc
Confidence               6799999999999999999999999999988777776666542   235678999999999999999999994    


Q ss_pred             -HHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                       ++++++||||+.++|+.+......+++.+
T Consensus       254 ~~~eil~Hp~f~~i~~~~l~~~~~~~p~~P  283 (337)
T d1o6la_         254 DAKEVMEHRFFLSINWQDVVQKKLLPPFKP  283 (337)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             cHHHHHcCcccccCCHHHHHhCCCCCCCCC
Confidence             89999999999999887655555555443

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-39  Score=306.66  Aligned_cols=158  Identities=34%  Similarity=0.598  Sum_probs=140.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....  .......||+.|+|||++.+  
T Consensus       103 l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~--~~~~~~~Gt~~Y~APE~~~~--  178 (263)
T d2j4za1         103 FDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTTLCGTLDYLPPEMIEG--  178 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC--CCCEETTEEGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCC--CcccccCCCCcccCHHHHcC--
Confidence            68999999999999999999999999999999999999999999999999976543  23456689999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                         ..|+.++|||||||++|+|++|++||.+.+......++.....   ..+..+|+++++||.+||.+||++|||++++
T Consensus       179 ---~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~~L~~dp~~R~t~~ei  252 (263)
T d2j4za1         179 ---RMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEF---TFPDFVTEGARDLISRLLKHNPSQRPMLREV  252 (263)
T ss_dssp             ---CCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC---CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence               6789999999999999999999999999887777666665432   2356789999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |+||||++
T Consensus       253 l~hp~~~~  260 (263)
T d2j4za1         253 LEHPWITA  260 (263)
T ss_dssp             HTCHHHHH
T ss_pred             HcCcCcCC
Confidence            99999963

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-39  Score=307.79  Aligned_cols=163  Identities=21%  Similarity=0.400  Sum_probs=137.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....  .......+||+.|+|||++.+
T Consensus       100 l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~  179 (271)
T d1nvra_         100 MPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR  179 (271)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcC
Confidence            689999999999999999999999999999999999999999999999999865432  123456789999999999976


Q ss_pred             cccCCCCC-CCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGY-DNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~-~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..+ +.++||||+||++|+|++|++||.........................+|+++++||.+||..||++|||+
T Consensus       180 -----~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  254 (271)
T d1nvra_         180 -----REFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITI  254 (271)
T ss_dssp             -----SSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             -----CCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCH
Confidence                 444 67899999999999999999999776554444444444333333445779999999999999999999999


Q ss_pred             HHHhcCcCCCC
Q psy9090         158 SELLEHPFITS  168 (488)
Q Consensus       158 ~ell~hp~f~~  168 (488)
                      +++++||||+.
T Consensus       255 ~eil~hpwf~~  265 (271)
T d1nvra_         255 PDIKKDRWYNK  265 (271)
T ss_dssp             HHHTTCTTTTC
T ss_pred             HHHhcCHhhCc
Confidence            99999999975

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=308.59  Aligned_cols=169  Identities=27%  Similarity=0.470  Sum_probs=145.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.+++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++.....  .....+.+||+.|+|||++.+
T Consensus       105 l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~  184 (288)
T d1uu3a_         105 FDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTE  184 (288)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeecc
Confidence            689999999999999999999999999999999999999999999999999876432  123345689999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                           ..|+.++|||||||++|+|++|.+||.+.+......++.....   ..+..+|+++++||.+||..||.+|||++
T Consensus       185 -----~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~~L~~dP~~R~t~~  256 (288)
T d1uu3a_         185 -----KSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEY---DFPEKFFPKARDLVEKLLVLDATKRLGCE  256 (288)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCC---CCCTTCCHHHHHHHHTTSCSSGGGSTTSG
T ss_pred             -----CCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCC---CCCccCCHHHHHHHHHHccCCHhHCcCHH
Confidence                 6789999999999999999999999999888777777766532   23567899999999999999999999998


Q ss_pred             H------HhcCcCCCCCCCCccccc
Q psy9090         159 E------LLEHPFITSLPENDLHLS  177 (488)
Q Consensus       159 e------ll~hp~f~~~~~~~~~~~  177 (488)
                      |      +++||||++++|+.+...
T Consensus       257 e~~~~~~i~~Hpff~~i~w~~l~~~  281 (288)
T d1uu3a_         257 EMEGYGPLKAHPFFESVTWENLHQQ  281 (288)
T ss_dssp             GGTCHHHHHTSGGGTTCCCTTGGGS
T ss_pred             HHcCCHHHHcCCccCCCCHHHhhcC
Confidence            7      588999999999876543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-38  Score=316.04  Aligned_cols=174  Identities=26%  Similarity=0.493  Sum_probs=152.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.|+.||+.||.|||++|||||||||+|||++.+|.+||+|||+++....   ...+..||+.|+|||++.+  
T Consensus       138 l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~---~~~~~~Gt~~Y~APE~~~~--  212 (350)
T d1rdqe_         138 FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG---RTWTLCGTPEALAPEIILS--  212 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS---CBCCCEECGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccc---ccccccCccccCCHHHHcC--
Confidence            68999999999999999999999999999999999999999999999999987653   2346789999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..|+.++|||||||++|+|+||++||.+.+......++......   .+..+|+++.+||++||..||.+|+     
T Consensus       213 ---~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~---~p~~~s~~~~~li~~~L~~dP~kR~~~~r~  286 (350)
T d1rdqe_         213 ---KGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVR---FPSHFSSDLKDLLRNLLQVDLTKRFGNLKN  286 (350)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC---CCTTCCHHHHHHHHHHSCSCTTTCTTSSTT
T ss_pred             ---CCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCC---CCccCCHHHHHHHHHHhhhCHHhccccccc
Confidence               67899999999999999999999999998887777777765432   3567899999999999999999995     


Q ss_pred             CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                      |++++++||||++++|..+......+++.+
T Consensus       287 t~~ell~Hp~f~~~~~~~~~~~~~~~p~~p  316 (350)
T d1rdqe_         287 GVNDIKNHKWFATTDWIAIYQRKVEAPFIP  316 (350)
T ss_dssp             TTHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             cHHHHHcCccccCCCHHHHHhcCCCcCccC
Confidence            899999999999999987765555444443

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-38  Score=316.78  Aligned_cols=179  Identities=26%  Similarity=0.408  Sum_probs=147.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++.....  .....+||+.|+|||++..+ 
T Consensus       104 ~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~--~~~~~~GT~~y~APE~~~~~-  180 (364)
T d1omwa3         104 FSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKG-  180 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS--CCCSCCSCGGGCCHHHHSTT-
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCC--cccccccccccchhHHhhcC-
Confidence            578999999999999999999999999999999999999999999999999876542  34566899999999999642 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY----  156 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps----  156 (488)
                         ..|+.++|||||||++|+|+||+.||.+....................+..+|+++++||.+||..||.+|||    
T Consensus       181 ---~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~  257 (364)
T d1omwa3         181 ---VAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGR  257 (364)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSS
T ss_pred             ---CCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCccc
Confidence               5689999999999999999999999976543322221222222233345678999999999999999999999    


Q ss_pred             -HHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         157 -MSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       157 -~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                       ++++++||||++++|..+......+++.+
T Consensus       258 ~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p  287 (364)
T d1omwa3         258 GAQEVKESPFFRSLDWQMVFLQKYPPPLIP  287 (364)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             CHHHHHcCccccCCCHHHHhcCCCCcCcCC
Confidence             79999999999999987766665555544

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-38  Score=309.82  Aligned_cols=173  Identities=24%  Similarity=0.496  Sum_probs=151.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++....   ...+.+||+.|+|||++.+  
T Consensus       101 ~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~---~~~~~~Gt~~Y~APE~l~~--  175 (316)
T d1fota_         101 FPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD---VTYTLCGTPDYIAPEVVST--  175 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS---CBCCCCSCTTTCCHHHHTT--
T ss_pred             ccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEecc---ccccccCcccccCHHHHcC--
Confidence            46889999999999999999999999999999999999999999999999987643   3446789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-----
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-----  155 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  155 (488)
                         ..|+.++|||||||++|+|++|+.||.+.+......++......   .+..+|++++++|.+||.+||.+|+     
T Consensus       176 ---~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~---~p~~~s~~~~~li~~~L~~dp~~R~~~~r~  249 (316)
T d1fota_         176 ---KPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELR---FPPFFNEDVKDLLSRLITRDLSQRLGNLQN  249 (316)
T ss_dssp             ---CCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHTCSCTTTCTTSSTT
T ss_pred             ---CCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCC---CCCCCCHHHHHHHHHHhhhCHHhccccchh
Confidence               67899999999999999999999999999888888887765432   3567899999999999999999996     


Q ss_pred             CHHHHhcCcCCCCCCCCcccccccccccc
Q psy9090         156 YMSELLEHPFITSLPENDLHLSTVNCQYK  184 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~~~~~~~~~~~  184 (488)
                      |++++++||||+++.|+.+......+++.
T Consensus       250 t~~~il~Hp~f~~i~~~~l~~~~~~~p~~  278 (316)
T d1fota_         250 GTEDVKNHPWFKEVVWEKLLSRNIETPYE  278 (316)
T ss_dssp             TTHHHHTSGGGSSCCHHHHHTTCSCCSCC
T ss_pred             hHHHHHcCcccccCCHHHHHhCCCCcCCC
Confidence            89999999999999998765555544443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-38  Score=302.02  Aligned_cols=159  Identities=28%  Similarity=0.543  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CeecccCCCCEEEc-cCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH--VIHRDLRGSNVLLT-KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g--ivHrDlkp~NILl~-~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.+++.++.||+.||+|||++|  |+||||||+|||++ .++.+||+|||+++....  ....+.+||+.|+|||++.
T Consensus       109 ~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~--~~~~~~~GT~~Y~aPE~~~  186 (270)
T d1t4ha_         109 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYE  186 (270)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC--CccCCcccCccccCHHHhC
Confidence            578999999999999999999999  99999999999996 578999999999975433  3345678999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                            ..|+.++|||||||++|+|++|+.||.+......+.+.+.....+...+...++++++||.+||..||++|||+
T Consensus       187 ------~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~  260 (270)
T d1t4ha_         187 ------EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSI  260 (270)
T ss_dssp             ------TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             ------CCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCH
Confidence                  35899999999999999999999999877665555555544333333445678999999999999999999999


Q ss_pred             HHHhcCcCCC
Q psy9090         158 SELLEHPFIT  167 (488)
Q Consensus       158 ~ell~hp~f~  167 (488)
                      +|+|+||||+
T Consensus       261 ~ell~Hp~fk  270 (270)
T d1t4ha_         261 KDLLNHAFFQ  270 (270)
T ss_dssp             HHHHTSGGGC
T ss_pred             HHHhCCcccC
Confidence            9999999995

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=303.42  Aligned_cols=159  Identities=30%  Similarity=0.506  Sum_probs=130.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC-----CeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENH-----VIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~g-----ivHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~   75 (488)
                      |++.+++.++.||+.||+|||++|     |+||||||+|||++.++.+||+|||+++.............||+.|+|||+
T Consensus       106 l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~  185 (269)
T d2java1         106 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQ  185 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHH
Confidence            578999999999999999999976     999999999999999999999999999877654445566789999999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      +.+     ..|+.++|||||||++|+|+||++||.+.+......++.....+.  .+..+|+++++||.+||..||.+||
T Consensus       186 l~~-----~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~--~~~~~s~~l~~li~~~L~~dp~~Rp  258 (269)
T d2java1         186 MNR-----MSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRR--IPYRYSDELNEIITRMLNLKDYHRP  258 (269)
T ss_dssp             HTT-----CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             HcC-----CCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCC--CCcccCHHHHHHHHHHcCCChhHCc
Confidence            976     678999999999999999999999999988877777777665443  3567899999999999999999999


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      |++|+++|||+
T Consensus       259 s~~ell~hp~i  269 (269)
T d2java1         259 SVEEILENPLI  269 (269)
T ss_dssp             CHHHHHTSTTC
T ss_pred             CHHHHHhCCcC
Confidence            99999999996

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-37  Score=305.53  Aligned_cols=161  Identities=39%  Similarity=0.802  Sum_probs=143.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+++....    .....||+.|+|||++.+..
T Consensus       112 l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~----~~~~~GT~~Y~APE~~~~~~  187 (309)
T d1u5ra_         112 LQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----ANSFVGTPYWMAPEVILAMD  187 (309)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS----BCCCCSCGGGCCHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCC----CCccccCccccCHHHHhccC
Confidence            68999999999999999999999999999999999999999999999999976543    34568999999999997532


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSEL  160 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~el  160 (488)
                        ...|+.++|||||||++|+|++|.+||.+......+.++.....+.. .+..+|+.+++||.+||..||.+|||++++
T Consensus       188 --~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~Rpt~~el  264 (309)
T d1u5ra_         188 --EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVL  264 (309)
T ss_dssp             --SCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence              14689999999999999999999999999888888888877665543 356789999999999999999999999999


Q ss_pred             hcCcCCCC
Q psy9090         161 LEHPFITS  168 (488)
Q Consensus       161 l~hp~f~~  168 (488)
                      |+||||..
T Consensus       265 l~Hp~~~~  272 (309)
T d1u5ra_         265 LKHRFVLR  272 (309)
T ss_dssp             TTCHHHHS
T ss_pred             HhCHHhcC
Confidence            99999965

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-38  Score=307.46  Aligned_cols=176  Identities=28%  Similarity=0.555  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.............||+.|+|||++.+  
T Consensus       100 ~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~--  177 (320)
T d1xjda_         100 FDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLG--  177 (320)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcC--
Confidence            578999999999999999999999999999999999999999999999999876655455566789999999999987  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH-H
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS-E  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~-e  159 (488)
                         ..|+.++||||+||++|+|++|+.||.+.+......++....+   ..+..+|+++++||.+||..||.+|||+. +
T Consensus       178 ---~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~---~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~  251 (320)
T d1xjda_         178 ---QKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP---FYPRWLEKEAKDLLVKLFVREPEKRLGVRGD  251 (320)
T ss_dssp             ---CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSC
T ss_pred             ---CCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC---CCCccCCHHHHHHHHHhcccCCCCCcCHHHH
Confidence               6799999999999999999999999999888777777765532   23567899999999999999999999995 8


Q ss_pred             HhcCcCCCCCCCCcccccccccccc
Q psy9090         160 LLEHPFITSLPENDLHLSTVNCQYK  184 (488)
Q Consensus       160 ll~hp~f~~~~~~~~~~~~~~~~~~  184 (488)
                      +++||||++++|+.+......+++.
T Consensus       252 l~~hpff~~~~~~~l~~~~~~pp~~  276 (320)
T d1xjda_         252 IRQHPLFREINWEELERKEIDPPFR  276 (320)
T ss_dssp             GGGSGGGTTCCHHHHHTTCSCC---
T ss_pred             HHhCchhccCCHHHHHhcCCCCCCC
Confidence            9999999999887765555544443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-37  Score=300.26  Aligned_cols=165  Identities=27%  Similarity=0.478  Sum_probs=141.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+++..... .......||+.|+|||++.+  
T Consensus       113 ~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~-~~~~~~~gT~~Y~APE~~~~--  189 (305)
T d1blxa_         113 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQ--  189 (305)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhhccc-ccCCCcccChhhcCcchhcC--
Confidence            578999999999999999999999999999999999999999999999998765443 34556789999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC---------------------CCCCCCCCcC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP---------------------PGLYRASNWS  136 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~s  136 (488)
                         .+|+.++||||+||++|+|++|++||.+.+....+.++...   +.                     +.......++
T Consensus       190 ---~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  266 (305)
T d1blxa_         190 ---SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDID  266 (305)
T ss_dssp             ---CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCC
T ss_pred             ---CCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCC
Confidence               67999999999999999999999999998877766665431   00                     0001134568


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         137 QHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       137 ~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      +.+++||.+||.+||++|||++|+|+||||+++..
T Consensus       267 ~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~  301 (305)
T d1blxa_         267 ELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  301 (305)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             HHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchh
Confidence            89999999999999999999999999999998754

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.4e-37  Score=300.99  Aligned_cols=163  Identities=29%  Similarity=0.518  Sum_probs=130.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc---cCCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT---KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~---~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||+.   .++.+||+|||+++..... ....+.+||+.|+|||++.
T Consensus       104 l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~-~~~~~~~GT~~y~APE~~~  182 (307)
T d1a06a_         104 YTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG-SVLSTACGTPGYVAPEVLA  182 (307)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------------CTTSCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCC-CeeeeeeeCccccCcHHHc
Confidence            68999999999999999999999999999999999995   5789999999999866443 3445678999999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..|+.++|||||||++|+|++|.+||.+.........+...... ..+.+..+|+++++||.+||.+||++|||
T Consensus       183 ~-----~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  257 (307)
T d1a06a_         183 Q-----KPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFT  257 (307)
T ss_dssp             T-----CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             C-----CCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcC
Confidence            6     67899999999999999999999999998887777777765432 22334678999999999999999999999


Q ss_pred             HHHHhcCcCCCCC
Q psy9090         157 MSELLEHPFITSL  169 (488)
Q Consensus       157 ~~ell~hp~f~~~  169 (488)
                      ++|+++||||++.
T Consensus       258 ~~eil~hp~~~~~  270 (307)
T d1a06a_         258 CEQALQHPWIAGD  270 (307)
T ss_dssp             HHHHHHSTTTTSS
T ss_pred             HHHHhcCHhhCCC
Confidence            9999999999863

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=307.85  Aligned_cols=166  Identities=30%  Similarity=0.641  Sum_probs=133.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++.+++.++.||+.||.|||+ +||+||||||+|||++.+|.+||+|||+|+....  ....+.+||+.|+|||++.+ 
T Consensus       101 l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~--~~~~~~~GT~~Y~APEvl~~-  177 (322)
T d1s9ja_         101 IPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID--SMANSFVGTRSYMSPERLQG-  177 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH--HTC---CCSSCCCCHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCC--CccccccCCccccCchHHcC-
Confidence            5789999999999999999997 5999999999999999999999999999986543  23456789999999999987 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHH-----------------------------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRAL-----------------------------------------  118 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~-----------------------------------------  118 (488)
                          ..|+.++||||+||++|+|++|+.||.+.+.....                                         
T Consensus       178 ----~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (322)
T d1s9ja_         178 ----THYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFEL  253 (322)
T ss_dssp             ----SCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHH
Confidence                67999999999999999999999999765432110                                         


Q ss_pred             -HHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCCcc
Q psy9090         119 -FQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPENDL  174 (488)
Q Consensus       119 -~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~~~  174 (488)
                       ..+....++ ......+|.++++||.+||..||.+|||++|+|+||||++.+++..
T Consensus       254 ~~~~~~~~~~-~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~~~~~  309 (322)
T d1s9ja_         254 LDYIVNEPPP-KLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEV  309 (322)
T ss_dssp             HHHHHTSCCC-CCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHHHSCC
T ss_pred             HhhhhccCCc-cCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCCcccc
Confidence             111111111 1122346899999999999999999999999999999987655433

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=300.05  Aligned_cols=167  Identities=24%  Similarity=0.389  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+++............+||+.|+|||++... 
T Consensus        97 l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~-  175 (299)
T d1ua2a_          97 LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGA-  175 (299)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccC-
Confidence            5778999999999999999999999999999999999999999999999998776554555667899999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCCC----------------------CCCCc
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGLY----------------------RASNW  135 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~~----------------------~~~~~  135 (488)
                         ..|+.++||||+||++|+|++|.+||.+....+.+.++...   +.....                      .....
T Consensus       176 ---~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (299)
T d1ua2a_         176 ---RMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAA  252 (299)
T ss_dssp             ---SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTC
T ss_pred             ---CCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccC
Confidence               56899999999999999999999999998887776666531   110000                      01245


Q ss_pred             CHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         136 SQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       136 s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      ++++++||.+||..||++|||++|+|+||||++.+.
T Consensus       253 s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~  288 (299)
T d1ua2a_         253 GDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPG  288 (299)
T ss_dssp             CHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSC
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCC
Confidence            789999999999999999999999999999997654

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.2e-36  Score=303.20  Aligned_cols=163  Identities=28%  Similarity=0.444  Sum_probs=143.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc--cCCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~--~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+|.+++.|+.||+.||+|||++||+||||||+|||++  .++.+||+|||+++..... .......||+.|+|||++.+
T Consensus       124 l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~-~~~~~~~gt~~y~aPE~~~~  202 (352)
T d1koba_         124 MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD-EIVKVTTATAEFAAPEIVDR  202 (352)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT-SCEEEECSSGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCC-CceeeccCcccccCHHHHcC
Confidence            58999999999999999999999999999999999998  5789999999999876543 34456789999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|+|+||.+||.+.+....+.++.....+ +...+..+|+++++||.+||..||.+|||+
T Consensus       203 -----~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  277 (352)
T d1koba_         203 -----EPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTV  277 (352)
T ss_dssp             -----CCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             -----CCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCH
Confidence                 67899999999999999999999999998888877777765432 223346789999999999999999999999


Q ss_pred             HHHhcCcCCCCC
Q psy9090         158 SELLEHPFITSL  169 (488)
Q Consensus       158 ~ell~hp~f~~~  169 (488)
                      .++|+||||+..
T Consensus       278 ~eil~Hp~~~~~  289 (352)
T d1koba_         278 HDALEHPWLKGD  289 (352)
T ss_dssp             HHHHTSTTTSSC
T ss_pred             HHHhcCHhhCCC
Confidence            999999999864

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=302.91  Aligned_cols=166  Identities=27%  Similarity=0.436  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEc--cCCcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLT--KDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~--~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.+++.|+.||+.||+|||++|||||||||+|||++  .++.+||+|||+++..... ....+..||+.|+|||++.+
T Consensus       121 l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~-~~~~~~~gT~~Y~aPEv~~~  199 (350)
T d1koaa2         121 MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEG  199 (350)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT-SCEEEECSCTTTCCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccc-cccceecCcccccCHHHHcC
Confidence            58999999999999999999999999999999999996  4678999999999876543 34456789999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC-CCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP-GLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|+|++|..||.+.+....+.++...... .......+|+++++||.+||..||++|||+
T Consensus       200 -----~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  274 (350)
T d1koaa2         200 -----KPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTI  274 (350)
T ss_dssp             -----CCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCH
T ss_pred             -----CCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCH
Confidence                 67899999999999999999999999998887777777665432 222234679999999999999999999999


Q ss_pred             HHHhcCcCCCCCCCC
Q psy9090         158 SELLEHPFITSLPEN  172 (488)
Q Consensus       158 ~ell~hp~f~~~~~~  172 (488)
                      +++|+||||+...+.
T Consensus       275 ~eil~hp~~~~~~~~  289 (350)
T d1koaa2         275 HQALEHPWLTPGNAP  289 (350)
T ss_dssp             HHHHHSTTTSCTTCC
T ss_pred             HHHhcCcccCCCCCC
Confidence            999999999876543

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.5e-36  Score=291.21  Aligned_cols=168  Identities=30%  Similarity=0.550  Sum_probs=144.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||.+.+..
T Consensus       107 l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~~PE~~~~~~  185 (277)
T d1phka_         107 LSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPG-EKLREVCGTPSYLAPEIIECSM  185 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT-CCBCCCCSCGGGCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccCC-CceeeeeccCCCCCHHHhhccc
Confidence            689999999999999999999999999999999999999999999999999876554 3445678999999999997532


Q ss_pred             c-CCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          81 K-EVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        81 ~-~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                      . ....++.++||||+||++|+|++|++||.+.+.......+..... ........+|+++++||.+||++||.+|||++
T Consensus       186 ~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~  265 (277)
T d1phka_         186 NDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAE  265 (277)
T ss_dssp             CTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             cccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHH
Confidence            1 224578999999999999999999999999988777777776543 23333457899999999999999999999999


Q ss_pred             HHhcCcCCCCC
Q psy9090         159 ELLEHPFITSL  169 (488)
Q Consensus       159 ell~hp~f~~~  169 (488)
                      ++++||||+..
T Consensus       266 eil~h~~~~~~  276 (277)
T d1phka_         266 EALAHPFFQQY  276 (277)
T ss_dssp             HHTTSGGGCTT
T ss_pred             HHHcCHHHHHh
Confidence            99999999863

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=295.54  Aligned_cols=168  Identities=28%  Similarity=0.470  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC----cEEEEecCCccccccccCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG----EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~----~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l   76 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++.++    .+||+|||+++..... ....+..||+.|+|||++
T Consensus       110 l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~-~~~~~~~~t~~y~APE~~  188 (293)
T d1jksa_         110 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG-NEFKNIFGTPEFVAPEIV  188 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTS-CBCSCCCCCGGGCCHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCC-ccccccCCCCcccCHHHH
Confidence            68999999999999999999999999999999999998776    4999999999876543 344566899999999999


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      .+     ..|+.++||||+||++|+|++|..||.+.+.......+....... ...+..+|+.+++||++||..||++||
T Consensus       189 ~~-----~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  263 (293)
T d1jksa_         189 NY-----EPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM  263 (293)
T ss_dssp             TT-----CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             cC-----CCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCc
Confidence            76     678999999999999999999999999988877777776643321 112356799999999999999999999


Q ss_pred             CHHHHhcCcCCCCCCCCcc
Q psy9090         156 YMSELLEHPFITSLPENDL  174 (488)
Q Consensus       156 s~~ell~hp~f~~~~~~~~  174 (488)
                      |++++++||||+..+++..
T Consensus       264 s~~eil~hp~~~~~~~~~~  282 (293)
T d1jksa_         264 TIQDSLQHPWIKPKDTQQA  282 (293)
T ss_dssp             CHHHHHHSTTTCC------
T ss_pred             CHHHHhcCcccCCCChhHh
Confidence            9999999999998776543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=290.32  Aligned_cols=167  Identities=25%  Similarity=0.461  Sum_probs=141.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+++.............||+.|+|||++... 
T Consensus        99 l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~-  177 (298)
T d1gz8a_          99 IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC-  177 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccc-
Confidence            6899999999999999999999999999999999999999999999999998766554556667899999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CCCCCC-----------------------CCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PPPGLY-----------------------RASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~~~~~-----------------------~~~~  134 (488)
                         ..++.++|+||+||++|+|++|+.||.+.+....+.++...   +.....                       ....
T Consensus       178 ---~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (298)
T d1gz8a_         178 ---KYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPP  254 (298)
T ss_dssp             ---SSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTT
T ss_pred             ---cCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccC
Confidence               34678999999999999999999999988877766665431   100000                       0124


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      +|+++++||.+||.+||++|||++|+++||||++++.
T Consensus       255 ~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~  291 (298)
T d1gz8a_         255 LDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTK  291 (298)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCC
Confidence            5789999999999999999999999999999998754

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-36  Score=287.73  Aligned_cols=154  Identities=26%  Similarity=0.497  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-CCcEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++++++.++.||+.||+|||++||+||||||+|||++. ++.+||+|||+++....  ....+..||+.|+|||++.+.
T Consensus       107 l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~--~~~~~~~GT~~y~aPE~~~~~  184 (273)
T d1xwsa_         107 LQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD--TVYTDFDGTRVYSPPEWIRYH  184 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCS--SCBCCCCSCGGGSCHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceeccc--ccccccccCCCcCCHHHHcCC
Confidence            689999999999999999999999999999999999985 47999999999976543  334567899999999999762


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..++.++|||||||++|+|++|+.||...+      .+.+..   ...+..+|+++++||.+||..||++|||++|
T Consensus       185 ----~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~i~~~~---~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e  251 (273)
T d1xwsa_         185 ----RYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQ---VFFRQRVSSECQHLIRWCLALRPSDRPTFEE  251 (273)
T ss_dssp             ----CBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCC---CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ----CCCCcccccccceeeehhHhhCCCCCCCch------HHhhcc---cCCCCCCCHHHHHHHHHHccCCHhHCcCHHH
Confidence                234677999999999999999999997632      233332   2234578999999999999999999999999


Q ss_pred             HhcCcCCCCC
Q psy9090         160 LLEHPFITSL  169 (488)
Q Consensus       160 ll~hp~f~~~  169 (488)
                      +++||||+++
T Consensus       252 il~hp~~~~~  261 (273)
T d1xwsa_         252 IQNHPWMQDV  261 (273)
T ss_dssp             HHTSGGGSSC
T ss_pred             HhcCHhhCCC
Confidence            9999999875

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=298.17  Aligned_cols=162  Identities=28%  Similarity=0.471  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCccccccccCccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~   77 (488)
                      |+|.+++.|+.||+.||+|||++||+||||||+|||++.   .+.+||+|||+++..... ......+||+.|+|||++.
T Consensus       108 l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~  186 (335)
T d2ozaa1         108 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH-NSLTTPCYTPYYVAPEVLG  186 (335)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCC-CCCCCCSCCCSSCCCCCCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCC-CccccccCCcccCCcHHHc
Confidence            578999999999999999999999999999999999985   567999999999876543 3445678999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCC---C--CCCCcCHHHHHHHHHhcccCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGL---Y--RASNWSQHYVDFIAECLEKNPE  152 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~---~--~~~~~s~~~~~li~~~L~~dP~  152 (488)
                      +     ..|+.++|||||||++|+|+||++||.+.........+........   +  ....+|+++++||++||..||+
T Consensus       187 ~-----~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  261 (335)
T d2ozaa1         187 P-----EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPT  261 (335)
T ss_dssp             G-----GGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTT
T ss_pred             C-----CCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChh
Confidence            6     5689999999999999999999999977655444433333221111   1  1124689999999999999999


Q ss_pred             CCCCHHHHhcCcCCCC
Q psy9090         153 HRPYMSELLEHPFITS  168 (488)
Q Consensus       153 ~Rps~~ell~hp~f~~  168 (488)
                      +|||+.++++||||.+
T Consensus       262 ~R~s~~eil~hp~~~~  277 (335)
T d2ozaa1         262 QRMTITEFMNHPWIMQ  277 (335)
T ss_dssp             TSCCHHHHHHSHHHHT
T ss_pred             HCcCHHHHHcCHHhhC
Confidence            9999999999999965

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.7e-35  Score=287.09  Aligned_cols=164  Identities=26%  Similarity=0.516  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.++.||+.||+|||++|||||||||+|||++.++.+||+|||.+..............|++.|+|||.+.+. 
T Consensus        97 l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~-  175 (286)
T d1ob3a_          97 LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS-  175 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTC-
T ss_pred             cchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCC-
Confidence            6899999999999999999999999999999999999999999999999998765544445566799999999999752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---CC-----------------------CCCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---PP-----------------------PGLYRASN  134 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~~-----------------------~~~~~~~~  134 (488)
                         ..++.++||||+||++|+|++|++||.+.+....+.++...   +.                       +.......
T Consensus       176 ---~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (286)
T d1ob3a_         176 ---KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKG  252 (286)
T ss_dssp             ---CSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCS
T ss_pred             ---CCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhccc
Confidence               56789999999999999999999999988877766665421   00                       00111345


Q ss_pred             cCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCC
Q psy9090         135 WSQHYVDFIAECLEKNPEHRPYMSELLEHPFITS  168 (488)
Q Consensus       135 ~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  168 (488)
                      +++.+++||++||.+||++|||++|+++||||++
T Consensus       253 ~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         253 LDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            6889999999999999999999999999999974

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-35  Score=290.39  Aligned_cols=167  Identities=23%  Similarity=0.405  Sum_probs=139.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++.+++.+++||+.||+|||++||+||||||+|||++.++ .+||+|||+++..... ....+.+||+.|+|||.+.+.
T Consensus       119 l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~  197 (350)
T d1q5ka_         119 LPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVSYICSRYYRAPELIFGA  197 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT-SCCCSCCSCTTSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCC-cccccccccccccChHHhhcc
Confidence            68899999999999999999999999999999999999876 8999999999876543 344566899999999998752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC-------------------CCCCC-------CCCC
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN-------------------PPPGL-------YRAS  133 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~-------------------~~~~~-------~~~~  133 (488)
                          ..|+.++||||+||++|+|++|.+||........+..+...                   ..+..       ....
T Consensus       198 ----~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (350)
T d1q5ka_         198 ----TDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRP  273 (350)
T ss_dssp             ----SSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCT
T ss_pred             ----cCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhccc
Confidence                56899999999999999999999999888776666555420                   00000       1123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      .+++++.+||.+||..||++|||+.|+|+||||+++...
T Consensus       274 ~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~  312 (350)
T d1q5ka_         274 RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDP  312 (350)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccCC
Confidence            568999999999999999999999999999999876543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=288.50  Aligned_cols=180  Identities=31%  Similarity=0.509  Sum_probs=146.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc-cCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT-FDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.+++||+.||+|||++||+||||||+|||++.+|.+||+|||+++..... .....+..|++.|+|||.+.+.
T Consensus       126 ~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~  205 (322)
T d1vzoa_         126 FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGG  205 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcC
Confidence            468899999999999999999999999999999999999999999999999765332 2334566899999999999752


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCCCCCCcCHHHHHHHHHhcccCCCCCC-
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLYRASNWSQHYVDFIAECLEKNPEHRP-  155 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-  155 (488)
                         ...++.++|||||||++|+|++|..||.+.........+..   ...+  ..+..+|+++++||.+||.+||.+|| 
T Consensus       206 ---~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~--~~~~~~s~~~~~li~~~l~~dP~~R~s  280 (322)
T d1vzoa_         206 ---DSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP--PYPQEMSALAKDLIQRLLMKDPKKRLG  280 (322)
T ss_dssp             ---C---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC--CCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred             ---CcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCC--CCcccCCHHHHHHHHHHcccCHHHcCC
Confidence               13578899999999999999999999976644333222222   2222  23557899999999999999999999 


Q ss_pred             ----CHHHHhcCcCCCCCCCCccccccccccccc
Q psy9090         156 ----YMSELLEHPFITSLPENDLHLSTVNCQYKD  185 (488)
Q Consensus       156 ----s~~ell~hp~f~~~~~~~~~~~~~~~~~~~  185 (488)
                          |++|+++||||+.++|..+....+.+++.|
T Consensus       281 ~~~~t~~eil~Hpff~~i~~~~l~~~~~~~p~~p  314 (322)
T d1vzoa_         281 CGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKP  314 (322)
T ss_dssp             SSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             CCcccHHHHHcCHhhcCCCHHHHHhCCCCcCCCC
Confidence                489999999999999988877777777654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-34  Score=285.38  Aligned_cols=165  Identities=28%  Similarity=0.509  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++..++.+++||+.||+|||++||+||||||+|||++.++.+|++|||+++....   ......||+.|+|||++.+. 
T Consensus       118 l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~---~~~~~~~t~~y~aPE~~~~~-  193 (346)
T d1cm8a_         118 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS---EMTGYVVTRWYRAPEVILNW-  193 (346)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS---SCCSSCSCGGGCCTHHHHTT-
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCC---ccccccccccccCHHHHcCC-
Confidence            68999999999999999999999999999999999999999999999999987643   34566899999999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC--CC--------------------------CCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN--PP--------------------------PGLYRA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~--~~--------------------------~~~~~~  132 (488)
                         ..++.++||||+||++|+|++|++||.+.+....+..+...  ..                          ......
T Consensus       194 ---~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1cm8a_         194 ---MRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASIL  270 (346)
T ss_dssp             ---TCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTC
T ss_pred             ---CCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhc
Confidence               45788999999999999999999999887765554443320  00                          001123


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                      ...++.+++||.+||..||.+|||++++|+||||+.+.+.
T Consensus       271 ~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~~  310 (346)
T d1cm8a_         271 TNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT  310 (346)
T ss_dssp             TTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC--
T ss_pred             cCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCCc
Confidence            4568999999999999999999999999999999987543

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=278.44  Aligned_cols=161  Identities=30%  Similarity=0.514  Sum_probs=130.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc--cCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT--FDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~--~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++.++..++.||+.||+|||++|||||||||+|||++.++.+||+|||+++.....  ........||+.|+|||++.+
T Consensus       101 ~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  180 (276)
T d1uwha_         101 FEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRM  180 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhc
Confidence            578899999999999999999999999999999999999999999999999765432  123345689999999999975


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh-CCCCC--CCCCCCcCHHHHHHHHHhcccCCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR-NPPPG--LYRASNWSQHYVDFIAECLEKNPEHRP  155 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~-~~~~~--~~~~~~~s~~~~~li~~~L~~dP~~Rp  155 (488)
                      ..  ...|+.++|||||||++|||+||+.||.+......+...+. ...++  ...+..+|+.+++||.+||..||.+||
T Consensus       181 ~~--~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RP  258 (276)
T d1uwha_         181 QD--KNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERP  258 (276)
T ss_dssp             CS--SCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             cc--CCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCc
Confidence            32  24689999999999999999999999988776655544443 32222  123567899999999999999999999


Q ss_pred             CHHHHhcC
Q psy9090         156 YMSELLEH  163 (488)
Q Consensus       156 s~~ell~h  163 (488)
                      |+++++++
T Consensus       259 t~~~il~~  266 (276)
T d1uwha_         259 LFPQILAS  266 (276)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999876

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=284.50  Aligned_cols=167  Identities=31%  Similarity=0.554  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.+++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+++......   ......+||+.|+|||++.
T Consensus       106 l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~  185 (345)
T d1pmea_         106 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIML  185 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhh
Confidence            6899999999999999999999999999999999999999999999999997654321   2235567999999999986


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhC---C-------------------CCCC------
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRN---P-------------------PPGL------  129 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~---~-------------------~~~~------  129 (488)
                      ..    ..|+.++||||+||++|+|++|++||.+.............   +                   .+..      
T Consensus       186 ~~----~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (345)
T d1pmea_         186 NS----KGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWN  261 (345)
T ss_dssp             TB----CSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHH
T ss_pred             cC----CCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHH
Confidence            52    56789999999999999999999999887655444333210   0                   0000      


Q ss_pred             CCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         130 YRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       130 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                      .....+|+++++||.+||..||.+|||++++|+||||+....
T Consensus       262 ~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~  303 (345)
T d1pmea_         262 RLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  303 (345)
T ss_dssp             HHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             HhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCC
Confidence            012356889999999999999999999999999999986543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=288.24  Aligned_cols=162  Identities=25%  Similarity=0.421  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccC--CcEEEEecCCccccccccCccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKD--GEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~--~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |+|.+++.|+.||+.||+|||++||+||||||+|||++.+  +.+||+|||+++..... .......||+.|+|||.+.+
T Consensus        99 l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~-~~~~~~~~t~~y~ape~~~~  177 (321)
T d1tkia_          99 LNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG-DNFRLLFTAPEYYAPEVHQH  177 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT-CEEEEEESCGGGSCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccC-CcccccccccccccchhccC
Confidence            6899999999999999999999999999999999999854  47999999999876543 33456689999999999876


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCC-CCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPG-LYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|+|++|.+||.+.+......++....... ......+|+++++||.+||..||.+|||+
T Consensus       178 -----~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  252 (321)
T d1tkia_         178 -----DVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTA  252 (321)
T ss_dssp             -----CEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             -----CCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCH
Confidence                 668899999999999999999999999998888777777654321 11234679999999999999999999999


Q ss_pred             HHHhcCcCCCC
Q psy9090         158 SELLEHPFITS  168 (488)
Q Consensus       158 ~ell~hp~f~~  168 (488)
                      +++++||||++
T Consensus       253 ~eil~hp~~~~  263 (321)
T d1tkia_         253 SEALQHPWLKQ  263 (321)
T ss_dssp             HHHHHSHHHHS
T ss_pred             HHHhcCHhhcc
Confidence            99999999975

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=281.59  Aligned_cols=165  Identities=24%  Similarity=0.437  Sum_probs=134.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccc----cCccccccCCCccccchhh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANT----FDKKKTFLGSPSWMAPEIM   76 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~----~~~~~~~~gt~~y~aPE~l   76 (488)
                      +++.+++.+++||+.||.|||++||+||||||+|||++.++.+||+|||+++.....    .....+.+||+.|+|||++
T Consensus       114 ~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~  193 (318)
T d3blha1         114 FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL  193 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHH
Confidence            578899999999999999999999999999999999999999999999999755422    1223445799999999998


Q ss_pred             cccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHh---CCCCCCCCC---------------------
Q psy9090          77 RCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVR---NPPPGLYRA---------------------  132 (488)
Q Consensus        77 ~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~---~~~~~~~~~---------------------  132 (488)
                      .+.    ..|+.++||||+||++|+|++|++||.+.........+..   ...+.....                     
T Consensus       194 ~~~----~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (318)
T d3blha1         194 LGE----RDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVK  269 (318)
T ss_dssp             TTC----SSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHH
T ss_pred             cCC----CCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccch
Confidence            752    4689999999999999999999999998877665554432   111110000                     


Q ss_pred             -----CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         133 -----SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       133 -----~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                           ...++.+++||.+||.+||++|||++|+|+||||+..
T Consensus       270 ~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~  311 (318)
T d3blha1         270 DRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSD  311 (318)
T ss_dssp             HHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSS
T ss_pred             hhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccC
Confidence                 0126678899999999999999999999999999853

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=285.27  Aligned_cols=157  Identities=25%  Similarity=0.425  Sum_probs=135.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.+++.|+.||+.||+|||++|||||||||+|||++.++.+||+|||+|+.......  ...+..||+.|+|||++.+
T Consensus       161 l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  240 (325)
T d1rjba_         161 LTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE  240 (325)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcC
Confidence            57889999999999999999999999999999999999999999999999986544322  2235578999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|||+| |.+||.+......+.+++..... ...+..+|+++++||.+||+.||++|||+
T Consensus       241 -----~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~li~~cl~~dP~~RPt~  314 (325)
T d1rjba_         241 -----GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFK-MDQPFYATEEIYIIMQSCWAFDSRKRPSF  314 (325)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCC-CCCCCcCCHHHHHHHHHHcCCChhHCcCH
Confidence                 678999999999999999997 89999887766667777665432 23456789999999999999999999999


Q ss_pred             HHHhcC
Q psy9090         158 SELLEH  163 (488)
Q Consensus       158 ~ell~h  163 (488)
                      ++|++|
T Consensus       315 ~ei~~~  320 (325)
T d1rjba_         315 PNLTSF  320 (325)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5e-34  Score=282.12  Aligned_cols=167  Identities=23%  Similarity=0.406  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCC-cEEEEecCCccccccccCccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDG-EVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~-~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++.+++.+++||+.||+|||++||+||||||+|||++.++ .+||+|||+++..... ......+||+.|+|||++.+.
T Consensus       126 l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~  204 (328)
T d3bqca1         126 LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-QEYNVRVASRYFKGPELLVDY  204 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTT-CCCCSCCSCGGGCCHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCC-CcccccccCccccCcccccCC
Confidence            68999999999999999999999999999999999998755 6999999999876543 345566899999999998763


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHH-HHHHHHh--------------CCC------------------
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTR-ALFQIVR--------------NPP------------------  126 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~-~~~~~~~--------------~~~------------------  126 (488)
                          ..|+.++||||+||++|+|++|..||....... ....+..              ...                  
T Consensus       205 ----~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (328)
T d3bqca1         205 ----QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWE  280 (328)
T ss_dssp             ----CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGG
T ss_pred             ----CCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchh
Confidence                457899999999999999999999997654321 1111110              000                  


Q ss_pred             --CCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCCC
Q psy9090         127 --PGLYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPEN  172 (488)
Q Consensus       127 --~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~~  172 (488)
                        ........+++++++||++||..||.+|||++|+|+||||+++.|+
T Consensus       281 ~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         281 RFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD  328 (328)
T ss_dssp             GGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCCC
T ss_pred             hcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCCC
Confidence              0000112358899999999999999999999999999999998774

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=275.64  Aligned_cols=159  Identities=24%  Similarity=0.447  Sum_probs=134.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......   ......||+.|+|||++.
T Consensus       104 l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~  183 (277)
T d1xbba_         104 VKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN  183 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhc
Confidence            57899999999999999999999999999999999999999999999999986543211   223457899999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..|+.++|||||||++|||+| |.+||.+....+....+..+..+.  .+..+|+++.+||.+||..||++|||
T Consensus       184 ~-----~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~--~p~~~~~~~~~li~~cl~~dp~~RPs  256 (277)
T d1xbba_         184 Y-----YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG--CPAGCPREMYDLMNLCWTYDVENRPG  256 (277)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             C-----CCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCC--CCcccCHHHHHHHHHHcCCCHhHCcC
Confidence            6     568899999999999999997 899999988777666666554443  35678999999999999999999999


Q ss_pred             HHHHh---cCcCC
Q psy9090         157 MSELL---EHPFI  166 (488)
Q Consensus       157 ~~ell---~hp~f  166 (488)
                      +++++   +|+|+
T Consensus       257 ~~~i~~~L~~~~~  269 (277)
T d1xbba_         257 FAAVELRLRNYYY  269 (277)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCHHh
Confidence            99984   56554

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-34  Score=277.66  Aligned_cols=156  Identities=28%  Similarity=0.463  Sum_probs=126.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||+|||++|||||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+
T Consensus       131 l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  210 (299)
T d1ywna1         131 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD  210 (299)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhc
Confidence            4788999999999999999999999999999999999999999999999997654322  23345679999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHh-CCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVR-NPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                           ..|+.++||||+||++|+|++| .+||.+........+.+. +..+  ..+..+++++++||.+||..||++|||
T Consensus       211 -----~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~Rpt  283 (299)
T d1ywna1         211 -----RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM--RAPDYTTPEMYQTMLDCWHGEPSQRPT  283 (299)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             -----CCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC--CCCccCCHHHHHHHHHHcCCChhHCcC
Confidence                 6789999999999999999986 568877665555544443 3333  235678999999999999999999999


Q ss_pred             HHHHhcC
Q psy9090         157 MSELLEH  163 (488)
Q Consensus       157 ~~ell~h  163 (488)
                      ++++++|
T Consensus       284 ~~eil~~  290 (299)
T d1ywna1         284 FSELVEH  290 (299)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-34  Score=275.07  Aligned_cols=160  Identities=25%  Similarity=0.435  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......   .......||+.|+|||++.
T Consensus       106 l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  185 (285)
T d1u59a_         106 IPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN  185 (285)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHh
Confidence            5789999999999999999999999999999999999999999999999998654321   2223456899999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     ..|+.++|||||||++|||+| |.+||.+....+....+..+..+.  .+..+|+++.+||.+||..||++|||
T Consensus       186 ~-----~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~~p~~RPs  258 (285)
T d1u59a_         186 F-----RKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRME--CPPECPPELYALMSDCWIYKWEDRPD  258 (285)
T ss_dssp             H-----CEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHTTCSSGGGSCC
T ss_pred             C-----CCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCCcCCHHHHHHHHHHcCCCHhHCcC
Confidence            6     568999999999999999998 999999888777766666655443  35678999999999999999999999


Q ss_pred             HHHH---hcCcCCC
Q psy9090         157 MSEL---LEHPFIT  167 (488)
Q Consensus       157 ~~el---l~hp~f~  167 (488)
                      +.++   |+|+|+.
T Consensus       259 ~~~i~~~L~~~~~~  272 (285)
T d1u59a_         259 FLTVEQRMRACYYS  272 (285)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            9887   5677763

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=271.72  Aligned_cols=161  Identities=27%  Similarity=0.480  Sum_probs=135.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++.++..|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......||+.|+|||++.. 
T Consensus       106 l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~-  184 (272)
T d1qpca_         106 LTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY-  184 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhC-
Confidence            5788999999999999999999999999999999999999999999999998764332 22345578999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..|+.++|||||||++|||+|| .+||...........+.....+.  .+..+++++.+||.+||+.||++|||++
T Consensus       185 ----~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~~P~~Rpt~~  258 (272)
T d1qpca_         185 ----GTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMV--RPDNCPEELYQLMRLCWKERPEDRPTFD  258 (272)
T ss_dssp             ----CEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC--CcccChHHHHHHHHHHcCCCHhHCcCHH
Confidence                5689999999999999999995 55666666666666665544333  3567899999999999999999999999


Q ss_pred             HHhc--CcCCCC
Q psy9090         159 ELLE--HPFITS  168 (488)
Q Consensus       159 ell~--hp~f~~  168 (488)
                      ++++  |+||++
T Consensus       259 ei~~~L~~~fts  270 (272)
T d1qpca_         259 YLRSVLEDFFTA  270 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhc
Confidence            9987  778753

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-33  Score=269.70  Aligned_cols=165  Identities=24%  Similarity=0.438  Sum_probs=133.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.++.|++.||+|||++||+||||||+|||++.++.+||+|||.++.............+++.|+|||++... 
T Consensus        98 ~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~-  176 (292)
T d1unla_          98 LDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA-  176 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTC-
T ss_pred             cchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccC-
Confidence            4788999999999999999999999999999999999999999999999998766544445555788899999998752 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHh---CCC-----------------------CCCCCCC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVR---NPP-----------------------PGLYRAS  133 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-~~~~~~~~~~~---~~~-----------------------~~~~~~~  133 (488)
                         ..++.++||||+||++|+|++|+.||... +.......+..   .+.                       .......
T Consensus       177 ---~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
T d1unla_         177 ---KLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVP  253 (292)
T ss_dssp             ---SCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTST
T ss_pred             ---CCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccc
Confidence               44789999999999999999999986544 33333333321   100                       0001123


Q ss_pred             CcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         134 NWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       134 ~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                      .+++.+++||.+||.+||.+|||++|+|+||||+++
T Consensus       254 ~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~  289 (292)
T d1unla_         254 KLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             TCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSC
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcCC
Confidence            568899999999999999999999999999999875

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-33  Score=271.72  Aligned_cols=156  Identities=24%  Similarity=0.440  Sum_probs=125.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-----ccccccCCCccccchh
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-----KKKTFLGSPSWMAPEI   75 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-----~~~~~~gt~~y~aPE~   75 (488)
                      +++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......     ......||+.|+|||+
T Consensus       125 l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~  204 (299)
T d1jpaa_         125 FTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEA  204 (299)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHH
Confidence            57889999999999999999999999999999999999999999999999986543211     1122457899999999


Q ss_pred             hcccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCC
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHR  154 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  154 (488)
                      +.+     ..|+.++|||||||++|||+| |.+||.+.........+..+..++  .+..+++.+.+||.+||..||++|
T Consensus       205 ~~~-----~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~cl~~~P~~R  277 (299)
T d1jpaa_         205 IQY-----RKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLP--PPMDCPSALHQLMLDCWQKDRNHR  277 (299)
T ss_dssp             HHS-----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSTTTS
T ss_pred             Hhc-----CCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC--CCccchHHHHHHHHHHcCCCHhHC
Confidence            976     678999999999999999998 899999988877777776654433  356789999999999999999999


Q ss_pred             CCHHHHhcC
Q psy9090         155 PYMSELLEH  163 (488)
Q Consensus       155 ps~~ell~h  163 (488)
                      ||+.+++++
T Consensus       278 Ps~~ei~~~  286 (299)
T d1jpaa_         278 PKFGQIVNT  286 (299)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999998764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.4e-33  Score=268.95  Aligned_cols=156  Identities=24%  Similarity=0.438  Sum_probs=125.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++.++..++.||+.||.|||++||+||||||+||+++.++.+||+|||+++...... .......||+.|+|||++.+ 
T Consensus       105 l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~-  183 (273)
T d1mp8a_         105 LDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF-  183 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhcc-
Confidence            5789999999999999999999999999999999999999999999999998654322 22345568999999999986 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..|+.++|||||||++|+|++ |.+||.+........++..+..++  .+..+|+.+.+||.+||..||++|||+.
T Consensus       184 ----~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rps~~  257 (273)
T d1mp8a_         184 ----RRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLP--MPPNCPPTLYSLMTKCWAYDPSRRPRFT  257 (273)
T ss_dssp             ----CCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCC--CCCCCCHHHHHHHHHHcCCCHhHCcCHH
Confidence                678999999999999999987 899999988877777777655443  4567899999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      ++++|
T Consensus       258 ei~~~  262 (273)
T d1mp8a_         258 ELKAQ  262 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.4e-33  Score=266.02  Aligned_cols=156  Identities=26%  Similarity=0.472  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      ++++.+..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+++....... ......||+.|+|||++.+ 
T Consensus        98 ~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~-  176 (263)
T d1sm2a_          98 FAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF-  176 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHHHTT-
T ss_pred             CCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcC-
Confidence            46888999999999999999999999999999999999999999999999986543322 2234578999999999976 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..|+.++||||+||++|||+| |.+||...........+.....+.  .+...++++.+||.+||..||++|||++
T Consensus       177 ----~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~~p~~Rps~~  250 (263)
T d1sm2a_         177 ----SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLY--KPRLASTHVYQIMNHCWKERPEDRPAFS  250 (263)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCC--CccccCHHHHHHHHHHccCCHhHCcCHH
Confidence                679999999999999999999 577777777666666666554332  3567799999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      ++++|
T Consensus       251 ~il~~  255 (263)
T d1sm2a_         251 RLLRQ  255 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=7.2e-33  Score=268.42  Aligned_cols=156  Identities=23%  Similarity=0.405  Sum_probs=127.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....... ......||+.|+|||++.+ 
T Consensus       112 ~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~-  190 (287)
T d1opja_         112 VSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY-  190 (287)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcC-
Confidence            57889999999999999999999999999999999999999999999999987644322 2233458899999999986 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                          ..|+.++||||+||++|+|++|..||........+.+.+..... ...+..+|+.+++||.+||..||++|||+++
T Consensus       191 ----~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e  265 (287)
T d1opja_         191 ----NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR-MERPEGCPEKVYELMRACWQWNPSDRPSFAE  265 (287)
T ss_dssp             ----CCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ----CCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCC-CCCCccchHHHHHHHHHHcCCCHhHCcCHHH
Confidence                67899999999999999999976665444434444444443321 2245678999999999999999999999999


Q ss_pred             Hhc
Q psy9090         160 LLE  162 (488)
Q Consensus       160 ll~  162 (488)
                      +++
T Consensus       266 i~~  268 (287)
T d1opja_         266 IHQ  268 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            976

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-32  Score=266.56  Aligned_cols=163  Identities=26%  Similarity=0.446  Sum_probs=131.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc-CccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF-DKKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~l~~~   79 (488)
                      |++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...... .......||+.|+|||++.. 
T Consensus       110 l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-  188 (285)
T d1fmka3         110 LRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY-  188 (285)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhC-
Confidence            5789999999999999999999999999999999999999999999999997654322 22334578999999999986 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..++.++||||+||++|+|++| .+|+........+..+.....++  .+..+++++++||.+||..||++|||++
T Consensus       189 ----~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~  262 (285)
T d1fmka3         189 ----GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP--CPPECPESLHDLMCQCWRKEPEERPTFE  262 (285)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----CCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC--CCcccCHHHHHHHHHHcccCHhHCcCHH
Confidence                6789999999999999999995 55556666555666665554333  4567899999999999999999999999


Q ss_pred             HHhc--CcCCCCCC
Q psy9090         159 ELLE--HPFITSLP  170 (488)
Q Consensus       159 ell~--hp~f~~~~  170 (488)
                      ++++  ++||++..
T Consensus       263 ~i~~~L~~~~~~~~  276 (285)
T d1fmka3         263 YLQAFLEDYFTSTE  276 (285)
T ss_dssp             HHHHHHHTTTSCSC
T ss_pred             HHHHHHhhhhcCCC
Confidence            9987  88997653

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-32  Score=262.56  Aligned_cols=156  Identities=26%  Similarity=0.467  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC-ccccccCCCccccchhhccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD-KKKTFLGSPSWMAPEIMRCG   79 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~-~~~~~~gt~~y~aPE~l~~~   79 (488)
                      +++..++.++.||++||+|||++||+||||||+|||++.++.+||+|||+++....... ......||+.|+|||++.+ 
T Consensus        97 ~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~-  175 (258)
T d1k2pa_          97 FQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY-  175 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHH-
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcC-
Confidence            46889999999999999999999999999999999999999999999999976543322 2334578999999999986 


Q ss_pred             ccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHH
Q psy9090          80 HKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMS  158 (488)
Q Consensus        80 ~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~  158 (488)
                          ..|+.++||||+||++|||+| |+.||.+.+..+...++.....+  ..|...++.+++||.+||+.||++|||++
T Consensus       176 ----~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~--~~p~~~~~~l~~li~~cl~~dP~~RPt~~  249 (258)
T d1k2pa_         176 ----SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRL--YRPHLASEKVYTIMYSCWHEKADERPTFK  249 (258)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             ----CCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCC--CCcccccHHHHHHHHHHccCCHhHCcCHH
Confidence                678999999999999999998 89999999887777767665433  34567899999999999999999999999


Q ss_pred             HHhcC
Q psy9090         159 ELLEH  163 (488)
Q Consensus       159 ell~h  163 (488)
                      ++++|
T Consensus       250 eil~~  254 (258)
T d1k2pa_         250 ILLSN  254 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.7e-33  Score=275.35  Aligned_cols=163  Identities=27%  Similarity=0.497  Sum_probs=132.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.+++.+++||+.||+|||++||+||||||+|||++.+|.+|++|||++.....   ...+..||+.|+|||++.+. 
T Consensus       118 l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~---~~~~~~g~~~y~apE~~~~~-  193 (348)
T d2gfsa1         118 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD---EMTGYVATRWYRAPEIMLNW-  193 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTG---GGSSSCHHHHTSCHHHHTTC-
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCc---ccccccccccccCchhhcCC-
Confidence            68999999999999999999999999999999999999999999999999876543   34456799999999997652 


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCC----------------------CCC------CC
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPPP----------------------GLY------RA  132 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~~----------------------~~~------~~  132 (488)
                         ..++.++|||||||++|+|++|.+||.+.+.......+......                      ...      ..
T Consensus       194 ---~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (348)
T d2gfsa1         194 ---MHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF  270 (348)
T ss_dssp             ---SCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHS
T ss_pred             ---ccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhc
Confidence               45688999999999999999999999988766555554431100                      000      01


Q ss_pred             CCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCC
Q psy9090         133 SNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLP  170 (488)
Q Consensus       133 ~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~  170 (488)
                      ...++++++||.+||..||.+|||++|+|+||||++..
T Consensus       271 ~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~  308 (348)
T d2gfsa1         271 IGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYH  308 (348)
T ss_dssp             TTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred             CCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCC
Confidence            34689999999999999999999999999999999764

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=5.1e-33  Score=268.25  Aligned_cols=160  Identities=29%  Similarity=0.549  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc---CccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF---DKKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~---~~~~~~~gt~~y~aPE~l~   77 (488)
                      |++.+++.++.||+.||+|||++||+||||||+|||++.++.++++|||.+.......   ......+||+.|+|||++.
T Consensus       108 l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~  187 (277)
T d1o6ya_         108 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR  187 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHc
Confidence            5789999999999999999999999999999999999999999999999886543221   2344568999999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC-CCCCCCCCcCHHHHHHHHHhcccCCCCCC-
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP-PGLYRASNWSQHYVDFIAECLEKNPEHRP-  155 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-  155 (488)
                      +     ..|+.++|||||||++|+|+||.+||.+.+......+++.... ++......+|+.+.+||.+||.+||.+|| 
T Consensus       188 ~-----~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~  262 (277)
T d1o6ya_         188 G-----DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQ  262 (277)
T ss_dssp             T-----CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCS
T ss_pred             C-----CCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHh
Confidence            6     6789999999999999999999999999888887777776543 23334567899999999999999999999 


Q ss_pred             CHHHHhcCcCC
Q psy9090         156 YMSELLEHPFI  166 (488)
Q Consensus       156 s~~ell~hp~f  166 (488)
                      |+++++ |+|.
T Consensus       263 sa~~l~-~~l~  272 (277)
T d1o6ya_         263 TAAEMR-ADLV  272 (277)
T ss_dssp             SHHHHH-HHHH
T ss_pred             HHHHHH-HHHH
Confidence            566554 5554

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.6e-33  Score=272.65  Aligned_cols=157  Identities=24%  Similarity=0.383  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       108 ~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  187 (317)
T d1xkka_         108 IGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILH  187 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhc
Confidence            57889999999999999999999999999999999999999999999999986543222  2234468999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|||+| |.+||.+....+....+..+..++  .+..+++.+.+||.+||..||.+|||+
T Consensus       188 -----~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~--~p~~~~~~~~~li~~cl~~dP~~RPs~  260 (317)
T d1xkka_         188 -----RIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLP--QPPICTIDVYMIMVKCWMIDADSRPKF  260 (317)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCC--CCTTBCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCC--CCcccCHHHHHHHHHhCCCChhhCcCH
Confidence                 678999999999999999998 899998887666655555554333  356789999999999999999999999


Q ss_pred             HHHhcCc
Q psy9090         158 SELLEHP  164 (488)
Q Consensus       158 ~ell~hp  164 (488)
                      .++++|.
T Consensus       261 ~eil~~l  267 (317)
T d1xkka_         261 RELIIEF  267 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999873

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-33  Score=277.53  Aligned_cols=163  Identities=24%  Similarity=0.465  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++.+++.+++||+.||+|||++||+||||||+|||++.++.+|++|||+++..... ......+||+.|+|||++.+  
T Consensus       116 ~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~-~~~~~~~~t~~y~aPE~l~~--  192 (355)
T d2b1pa1         116 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG--  192 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----------------CCTTCCHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhccccc-cccccccccccccChhhhcC--
Confidence            578999999999999999999999999999999999999999999999998765543 34456689999999999986  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHHhCCC---------------------CCCC---------
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIVRNPP---------------------PGLY---------  130 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~~~~~---------------------~~~~---------  130 (488)
                         ..+++++||||+||++|+|++|++||.+.+......++.....                     +...         
T Consensus       193 ---~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (355)
T d2b1pa1         193 ---MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFP  269 (355)
T ss_dssp             ---CCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSC
T ss_pred             ---CCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccc
Confidence               6789999999999999999999999988876655544432100                     0000         


Q ss_pred             ---C------CCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCC
Q psy9090         131 ---R------ASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSL  169 (488)
Q Consensus       131 ---~------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  169 (488)
                         .      ....|+++++||++||..||++|||++|+|+||||+..
T Consensus       270 ~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~  317 (355)
T d2b1pa1         270 DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  317 (355)
T ss_dssp             GGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             cccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCC
Confidence               0      01125678999999999999999999999999999864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-32  Score=263.26  Aligned_cols=155  Identities=22%  Similarity=0.391  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      +++.++..++.||+.||+|||+++|+||||||+|||++.++.+||+|||+++.......   ......||+.|+|||++.
T Consensus       107 ~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~  186 (283)
T d1mqba_         107 FSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAIS  186 (283)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHc
Confidence            57889999999999999999999999999999999999999999999999986543211   223346899999999997


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCC-CCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGK-PPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~-~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..|+.++|||||||++|||++|. +|+...........+..+..++  .+..+++.+.+||.+||..||++|||
T Consensus       187 ~-----~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~l~~li~~cl~~~p~~RPt  259 (283)
T d1mqba_         187 Y-----RKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLP--TPMDCPSAIYQLMMQCWQQERARRPK  259 (283)
T ss_dssp             S-----CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCC--CCTTCBHHHHHHHHHHTCSSTTTSCC
T ss_pred             c-----CCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCC--CchhhHHHHHHHHHHHCcCCHhHCcC
Confidence            6     67899999999999999999954 4555555555544444443333  35678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       260 ~~eil~  265 (283)
T d1mqba_         260 FADIVS  265 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999976

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=261.76  Aligned_cols=156  Identities=27%  Similarity=0.470  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC---ccccccCCCccccchhhc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD---KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~---~~~~~~gt~~y~aPE~l~   77 (488)
                      |++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.......   ......|++.|+|||++.
T Consensus       108 l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  187 (273)
T d1u46a_         108 FLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK  187 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHh
Confidence            57899999999999999999999999999999999999999999999999987643322   223446788999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      +     ..++.++|||||||++|||+| |.+||.+.+..+...++.+.... .+.+..+|+.+++||.+||..||++|||
T Consensus       188 ~-----~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~RPt  261 (273)
T d1u46a_         188 T-----RTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGER-LPRPEDCPQDIYNVMVQCWAHKPEDRPT  261 (273)
T ss_dssp             H-----CEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             C-----CCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCC-CCCcccccHHHHHHHHHHcCCChhHCcC
Confidence            6     568899999999999999998 89999999888877777665432 2345678999999999999999999999


Q ss_pred             HHHHhc
Q psy9090         157 MSELLE  162 (488)
Q Consensus       157 ~~ell~  162 (488)
                      +.++++
T Consensus       262 ~~ei~~  267 (273)
T d1u46a_         262 FVALRD  267 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.9e-32  Score=264.46  Aligned_cols=155  Identities=26%  Similarity=0.422  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..|+.||+.||+|||+++||||||||+|||++.++.+||+|||+++......  ....+..||+.|+|||++.+
T Consensus       137 l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  216 (301)
T d1lufa_         137 LSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY  216 (301)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHcc
Confidence            5678899999999999999999999999999999999999999999999997553321  22345678999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcCC-CCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDGK-PPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg~-~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|||++|. +||.+....+....+.....+.  .+..+++++.+||.+||+.+|++|||+
T Consensus       217 -----~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~--~p~~~~~~~~~li~~cl~~~P~~RPt~  289 (301)
T d1lufa_         217 -----NRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILA--CPENCPLELYNLMRLCWSKLPADRPSF  289 (301)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCC--CCccchHHHHHHHHHHcCCChhHCcCH
Confidence                 67999999999999999999985 7898888887777776655443  356789999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       290 ~ev~~  294 (301)
T d1lufa_         290 CSIHR  294 (301)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99965

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=260.71  Aligned_cols=155  Identities=28%  Similarity=0.478  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||+|||++|||||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+
T Consensus       132 l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~  211 (299)
T d1fgka_         132 LSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD  211 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcC
Confidence            5789999999999999999999999999999999999999999999999998664432  22344578999999999976


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..|+.++|||||||++|+|++ |.+||.+.........+..+..+.  .+..+++.+++||.+||+.||++|||+
T Consensus       212 -----~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~dP~~Rps~  284 (299)
T d1fgka_         212 -----RIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMD--KPSNCTNELYMMMRDCWHAVPSQRPTF  284 (299)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCC--CCSSCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCC--CCccchHHHHHHHHHHccCCHhHCcCH
Confidence                 679999999999999999998 799998888766555554443333  456789999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      .++++
T Consensus       285 ~eil~  289 (299)
T d1fgka_         285 KQLVE  289 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-31  Score=253.60  Aligned_cols=153  Identities=24%  Similarity=0.459  Sum_probs=127.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      +++..+..++.||+.||.|||+++|+||||||+|||++.++.+||+|||+++.....   .....+|+.|+|||++.+  
T Consensus       100 l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~---~~~~~~~~~y~aPE~l~~--  174 (262)
T d1byga_         100 LGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALRE--  174 (262)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC---CccccccccCCChHHHhC--
Confidence            578899999999999999999999999999999999999999999999999865432   334568899999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..++.++|||||||++|||+| |++||...........+..+..+..  +..+++.+++||.+||..||.+|||+.+
T Consensus       175 ---~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~li~~cl~~dP~~Rps~~~  249 (262)
T d1byga_         175 ---KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDA--PDGCPPAVYEVMKNCWHLDAAMRPSFLQ  249 (262)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCC--CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCC--CccCCHHHHHHHHHHcccCHhHCcCHHH
Confidence               678999999999999999998 7999988877777777665554443  5678999999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      ++++
T Consensus       250 l~~~  253 (262)
T d1byga_         250 LREQ  253 (262)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9873

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=260.37  Aligned_cols=155  Identities=26%  Similarity=0.427  Sum_probs=131.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccchhhcccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAPEIMRCGH   80 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~l~~~~   80 (488)
                      |++.++..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..... .......||+.|+|||.+..  
T Consensus       124 l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~l~~--  200 (309)
T d1fvra_         124 LSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPVRWMAIESLNY--  200 (309)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEE-CCC----CCTTTCCHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEcccccccccccc-ccccceecCCcccchHHhcc--
Confidence            578899999999999999999999999999999999999999999999999765443 23345578999999999976  


Q ss_pred             cCCCCCCCccchhhhHHHHHHHhcCC-CCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCHHH
Q psy9090          81 KEVDGYDNRIDVWALGITAIELGDGK-PPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYMSE  159 (488)
Q Consensus        81 ~~~~~~~~~~DiwslGvil~elltg~-~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~e  159 (488)
                         ..|+.++|||||||++|+|++|. +||.+.+.......+..+..+.  .+..+++++++||.+||..||++|||+++
T Consensus       201 ---~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~li~~cl~~dP~~RPs~~e  275 (309)
T d1fvra_         201 ---SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLE--KPLNCDDEVYDLMRQCWREKPYERPSFAQ  275 (309)
T ss_dssp             ---CEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCC--CCTTBCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCC--CCccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               67899999999999999999965 6788888777766666654433  35678999999999999999999999999


Q ss_pred             HhcC
Q psy9090         160 LLEH  163 (488)
Q Consensus       160 ll~h  163 (488)
                      ++++
T Consensus       276 il~~  279 (309)
T d1fvra_         276 ILVS  279 (309)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-31  Score=257.08  Aligned_cols=155  Identities=26%  Similarity=0.472  Sum_probs=133.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC--ccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD--KKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~l~~   78 (488)
                      +++..+..++.||+.||.|||+++|+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||.+.+
T Consensus       130 ~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~  209 (308)
T d1p4oa_         130 PSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKD  209 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHcc
Confidence            36778899999999999999999999999999999999999999999999986543322  2334468999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhcC-CCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGDG-KPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++||||+||++|||+|| .+||.+.+..+....+.....+.  .+..+++.+.++|.+||+.+|++|||+
T Consensus       210 -----~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~--~p~~~~~~l~~li~~cl~~~P~~RPs~  282 (308)
T d1p4oa_         210 -----GVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLD--KPDNCPDMLFELMRMCWQYNPKMRPSF  282 (308)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCC--CcccchHHHHHHHHHHcCCChhHCcCH
Confidence                 6788999999999999999998 58888888777777766654433  356789999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      +++++
T Consensus       283 ~~il~  287 (308)
T d1p4oa_         283 LEIIS  287 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-30  Score=256.18  Aligned_cols=156  Identities=28%  Similarity=0.469  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCcccccccc--CccccccCCCccccchhhcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTF--DKKKTFLGSPSWMAPEIMRC   78 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~l~~   78 (488)
                      |++.++..++.||+.||+|||++|+|||||||+|||++.++.+|++|||+++......  .......||+.|+|||++.+
T Consensus       142 l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  221 (311)
T d1t46a_         142 LDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFN  221 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcC
Confidence            5788999999999999999999999999999999999999999999999998654321  22344578999999999986


Q ss_pred             cccCCCCCCCccchhhhHHHHHHHhc-CCCCCCCCChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCCH
Q psy9090          79 GHKEVDGYDNRIDVWALGITAIELGD-GKPPFEDMHPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPYM  157 (488)
Q Consensus        79 ~~~~~~~~~~~~DiwslGvil~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  157 (488)
                           ..++.++|||||||++|+|+| |.+||........+.+++...... ..+..+++.+.+||.+||..||.+|||+
T Consensus       222 -----~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~l~~Li~~cl~~dP~~RPs~  295 (311)
T d1t46a_         222 -----CVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRM-LSPEHAPAEMYDIMKTCWDADPLKRPTF  295 (311)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             -----CCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC-CCcccccHHHHHHHHHHcCCChhHCcCH
Confidence                 678999999999999999998 677777766666666665443322 2356789999999999999999999999


Q ss_pred             HHHhc
Q psy9090         158 SELLE  162 (488)
Q Consensus       158 ~ell~  162 (488)
                      +++++
T Consensus       296 ~~il~  300 (311)
T d1t46a_         296 KQIVQ  300 (311)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.6e-30  Score=253.33  Aligned_cols=162  Identities=18%  Similarity=0.338  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc---CCcEEEEecCCcccccccc-------CccccccCCCcc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK---DGEVKIVDFGLSRETANTF-------DKKKTFLGSPSW   70 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~---~~~vkL~Dfg~a~~~~~~~-------~~~~~~~gt~~y   70 (488)
                      +++..+..++.||+.||+|||++||+||||||+|||++.   +..+||+|||+++......       .......||+.|
T Consensus       100 ~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y  179 (299)
T d1ckia_         100 FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARY  179 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccc
Confidence            578999999999999999999999999999999999864   4569999999998654321       123456899999


Q ss_pred             ccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChHHHHHHHH---hC--CCCCCCCCCCcCHHHHHHHHH
Q psy9090          71 MAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPTRALFQIV---RN--PPPGLYRASNWSQHYVDFIAE  145 (488)
Q Consensus        71 ~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~~~~~~~~---~~--~~~~~~~~~~~s~~~~~li~~  145 (488)
                      +|||++.+     ..|+.++|||||||++|+|++|..||...........+.   ..  ..+.......+|+++.++|.+
T Consensus       180 ~aPE~~~~-----~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~  254 (299)
T d1ckia_         180 ASINTHLG-----IEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNF  254 (299)
T ss_dssp             CCHHHHTT-----BCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHH
T ss_pred             cCHHHHhC-----CCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHH
Confidence            99999986     678999999999999999999999997765433222211   10  111111245689999999999


Q ss_pred             hcccCCCCCCCHHH---HhcCcCCC
Q psy9090         146 CLEKNPEHRPYMSE---LLEHPFIT  167 (488)
Q Consensus       146 ~L~~dP~~Rps~~e---ll~hp~f~  167 (488)
                      ||..+|++||++++   +|+|+|.+
T Consensus       255 cl~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         255 CRSLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             HHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HccCChhHCcCHHHHHHHHHHHHHH
Confidence            99999999999874   46676653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.9e-30  Score=259.47  Aligned_cols=163  Identities=20%  Similarity=0.335  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH-CCCeecccCCCCEEEccCCc------EEEEecCCccccccccCccccccCCCccccc
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE-NHVIHRDLRGSNVLLTKDGE------VKIVDFGLSRETANTFDKKKTFLGSPSWMAP   73 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~-~givHrDlkp~NILl~~~~~------vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP   73 (488)
                      +++..++.++.||+.||+|||+ .||+||||||+|||++.++.      ++++|||.+.....   .....+||+.|+||
T Consensus       122 ~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~---~~~~~~gt~~y~aP  198 (362)
T d1q8ya_         122 IPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE---HYTNSIQTREYRSP  198 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB---CCCSCCSCGGGCCH
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeeccccccccc---ccccccccccccCh
Confidence            4688999999999999999998 89999999999999987653      99999999875543   33566899999999


Q ss_pred             hhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCChH------HHHHHH---HhCC-------------------
Q psy9090          74 EIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHPT------RALFQI---VRNP-------------------  125 (488)
Q Consensus        74 E~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~~------~~~~~~---~~~~-------------------  125 (488)
                      |++.+     ..|+.++|+||+||++++|++|+.||......      ..+...   +...                   
T Consensus       199 E~~~~-----~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~  273 (362)
T d1q8ya_         199 EVLLG-----APWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRG  273 (362)
T ss_dssp             HHHHT-----CCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--
T ss_pred             hhccc-----cCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccch
Confidence            99986     67899999999999999999999999644221      111111   1000                   


Q ss_pred             ----CCC-------------CCCCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcCcCCCCCCC
Q psy9090         126 ----PPG-------------LYRASNWSQHYVDFIAECLEKNPEHRPYMSELLEHPFITSLPE  171 (488)
Q Consensus       126 ----~~~-------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~~~  171 (488)
                          ...             .......++.+++||.+||..||.+|||++|+|+||||++...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~  336 (362)
T d1q8ya_         274 LLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  336 (362)
T ss_dssp             CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             hhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCC
Confidence                000             0001123577899999999999999999999999999996643

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-30  Score=251.88  Aligned_cols=155  Identities=23%  Similarity=0.363  Sum_probs=125.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCCccccchhhc
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSPSWMAPEIMR   77 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~~y~aPE~l~   77 (488)
                      ++..+..++.|++.||.|||+++|+||||||+|||++.++.+||+|||+++.......    ......||+.|+|||.+.
T Consensus       128 ~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  207 (311)
T d1r0pa_         128 TVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ  207 (311)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHh
Confidence            4677889999999999999999999999999999999999999999999986543211    123346899999999998


Q ss_pred             ccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCC-ChHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHhcccCCCCCCC
Q psy9090          78 CGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDM-HPTRALFQIVRNPPPGLYRASNWSQHYVDFIAECLEKNPEHRPY  156 (488)
Q Consensus        78 ~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps  156 (488)
                      .     ..++.++||||||+++|||+||..||... ........+..+..+.  .+..+++.+.+||.+||..||++|||
T Consensus       208 ~-----~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~--~p~~~~~~l~~li~~cl~~dP~~RPs  280 (311)
T d1r0pa_         208 T-----QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLL--QPEYCPDPLYEVMLKCWHPKAEMRPS  280 (311)
T ss_dssp             H-----CCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             c-----CCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCC--CcccCcHHHHHHHHHHcCCCHhHCcC
Confidence            6     67899999999999999999977777543 3333344444444333  35678999999999999999999999


Q ss_pred             HHHHhcC
Q psy9090         157 MSELLEH  163 (488)
Q Consensus       157 ~~ell~h  163 (488)
                      +.|+++|
T Consensus       281 ~~ei~~~  287 (311)
T d1r0pa_         281 FSELVSR  287 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.95  E-value=3.6e-29  Score=243.04  Aligned_cols=157  Identities=18%  Similarity=0.298  Sum_probs=123.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEcc-----CCcEEEEecCCcccccccc-------CccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTK-----DGEVKIVDFGLSRETANTF-------DKKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~-----~~~vkL~Dfg~a~~~~~~~-------~~~~~~~gt~   68 (488)
                      +++.++..++.|++.||+|||++||+||||||+|||++.     ++.+||+|||+++......       ......+||+
T Consensus        98 ~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~  177 (293)
T d1csna_          98 FSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA  177 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEch
Confidence            578899999999999999999999999999999999974     5789999999998654321       1234568999


Q ss_pred             ccccchhhcccccCCCCCCCccchhhhHHHHHHHhcCCCCCCCCCh---HHHHHHHHhC--CCCCCCCCCCcCHHHHHHH
Q psy9090          69 SWMAPEIMRCGHKEVDGYDNRIDVWALGITAIELGDGKPPFEDMHP---TRALFQIVRN--PPPGLYRASNWSQHYVDFI  143 (488)
Q Consensus        69 ~y~aPE~l~~~~~~~~~~~~~~DiwslGvil~elltg~~Pf~~~~~---~~~~~~~~~~--~~~~~~~~~~~s~~~~~li  143 (488)
                      .|+|||++.+     ..+++++|||||||++|+|++|..||.+...   .....++...  ..+.......+|+++.+++
T Consensus       178 ~y~aPE~~~~-----~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii  252 (293)
T d1csna_         178 RYMSINTHLG-----REQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYM  252 (293)
T ss_dssp             TTCCHHHHTT-----CCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHH
T ss_pred             hhcCHHHhcC-----CCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHH
Confidence            9999999986     6789999999999999999999999975433   2222222111  1111112356789999999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q psy9090         144 AECLEKNPEHRPYMSELLE  162 (488)
Q Consensus       144 ~~~L~~dP~~Rps~~ell~  162 (488)
                      ..|+..+|++||+++.+.+
T Consensus       253 ~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         253 HYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             HHHHHCCTTCCCCHHHHHH
T ss_pred             HHHhcCCcccCcCHHHHHH
Confidence            9999999999999776543

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-28  Score=239.16  Aligned_cols=163  Identities=20%  Similarity=0.294  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH--------CCCeecccCCCCEEEccCCcEEEEecCCccccccccC----ccccccCCC
Q psy9090           1 MSEQHIAFILKEIITGMVFLHE--------NHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFD----KKKTFLGSP   68 (488)
Q Consensus         1 L~e~~~~~i~~qil~aL~~LH~--------~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~----~~~~~~gt~   68 (488)
                      +++.++..++.|++.||+|||+        +|||||||||+|||++.++.+||+|||+++.......    ......||+
T Consensus        97 l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~  176 (303)
T d1vjya_          97 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK  176 (303)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceeccc
Confidence            4678889999999999999996        5999999999999999999999999999986643321    234567999


Q ss_pred             ccccchhhcccccC-CCCCCCccchhhhHHHHHHHhcCCCCCCCCC--------------hHHHHHHHHhC-C-CCCCC-
Q psy9090          69 SWMAPEIMRCGHKE-VDGYDNRIDVWALGITAIELGDGKPPFEDMH--------------PTRALFQIVRN-P-PPGLY-  130 (488)
Q Consensus        69 ~y~aPE~l~~~~~~-~~~~~~~~DiwslGvil~elltg~~Pf~~~~--------------~~~~~~~~~~~-~-~~~~~-  130 (488)
                      .|+|||++.+.... ...++.++|||||||++|||+||.+||....              ........... . .|..+ 
T Consensus       177 ~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  256 (303)
T d1vjya_         177 RYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPN  256 (303)
T ss_dssp             GGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCG
T ss_pred             CcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCc
Confidence            99999998752110 1135678999999999999999988773211              11222233221 1 11111 


Q ss_pred             --CCCCcCHHHHHHHHHhcccCCCCCCCHHHHhcC
Q psy9090         131 --RASNWSQHYVDFIAECLEKNPEHRPYMSELLEH  163 (488)
Q Consensus       131 --~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  163 (488)
                        .....+..+.+|+.+||..||++|||+.+++++
T Consensus       257 ~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         257 RWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             GGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence              111223458899999999999999999999763

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.30  E-value=1.1e-13  Score=124.14  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCeecccCCCCEEEccCCcEEEEecCCccccccccCccccccCCCccccc------hh
Q psy9090           2 SEQHIAFILKEIITGMVFLHENHVIHRDLRGSNVLLTKDGEVKIVDFGLSRETANTFDKKKTFLGSPSWMAP------EI   75 (488)
Q Consensus         2 ~e~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~vkL~Dfg~a~~~~~~~~~~~~~~gt~~y~aP------E~   75 (488)
                      ++..+..++.||+.+|+|||++||+||||||+|||++.+ .++|+|||++....++..        ..|...      +.
T Consensus       101 ~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~~~~--------~~~l~rd~~~~~~~  171 (191)
T d1zara2         101 RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGEEGW--------REILERDVRNIITY  171 (191)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETTSTTH--------HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCCCCCc--------HHHHHHHHHHHHHH
Confidence            445678899999999999999999999999999999865 589999999876543211        112111      12


Q ss_pred             hcccccCCCCCCCccchhhhHH
Q psy9090          76 MRCGHKEVDGYDNRIDVWALGI   97 (488)
Q Consensus        76 l~~~~~~~~~~~~~~DiwslGv   97 (488)
                      +.      ..|+.++|+||+.-
T Consensus       172 f~------r~y~~~~d~~s~~~  187 (191)
T d1zara2         172 FS------RTYRTEKDINSAID  187 (191)
T ss_dssp             HH------HHHCCCCCHHHHHH
T ss_pred             Hc------CCCCCcccHHHHHH
Confidence            21      45788899999753

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=98.06  E-value=4.2e-08  Score=78.38  Aligned_cols=85  Identities=15%  Similarity=0.152  Sum_probs=64.4

Q ss_pred             CCCCCCCchhhhhccCCCCCCCC-hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchh
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNE-PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKV  311 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~-ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~  311 (488)
                      ..|.|++.||+..+......... -.+|..+|.+++|.|+..+++.++-+ +..|..- .+.++.||+.+|.++||.|+|
T Consensus        20 ~dG~idf~EF~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~ev~~~~~~~D~d~dG~I~~   99 (109)
T d1pvaa_          20 AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGI   99 (109)
T ss_dssp             STTCCCHHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred             CCCCCcHHHHHHHHHHccCCHHHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHCCCCcCcEeH
Confidence            45779999998776433222111 13999999999999999998877643 3333222 577999999999999999999


Q ss_pred             hhHhhhcc
Q psy9090         312 GEKIEKCV  319 (488)
Q Consensus       312 ~e~i~~~~  319 (488)
                      +||+.+|.
T Consensus       100 ~EF~~~m~  107 (109)
T d1pvaa_         100 DEFETLVH  107 (109)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=97.99  E-value=4.9e-08  Score=77.97  Aligned_cols=85  Identities=13%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             CCCCCCchhhhhccCCCCCCC-ChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchhh
Q psy9090         236 HLNLYGTKYHFKYKFKSRSDN-EPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKVG  312 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~~-~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~~  312 (488)
                      .+.|++.||+..+..+...+. --.+|..+|++.+|.|+..+++.++.+ +..|..- .+.++.|++.+|.++||.|+|+
T Consensus        21 ~G~idf~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~~~~~D~d~dG~I~~~  100 (109)
T d5pala_          21 PGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD  100 (109)
T ss_dssp             TTCCCHHHHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHH
T ss_pred             CCcCcHHHHHHHHHhcCCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHHHHHhCCCCCCCEeHH
Confidence            366899999976643222110 112999999999999999999987743 2223222 5679999999999999999999


Q ss_pred             hHhhhcch
Q psy9090         313 EKIEKCVN  320 (488)
Q Consensus       313 e~i~~~~~  320 (488)
                      ||+.+|.+
T Consensus       101 EF~~~m~~  108 (109)
T d5pala_         101 EFAKMVAQ  108 (109)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=97.58  E-value=6.9e-07  Score=70.82  Aligned_cols=83  Identities=14%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             CCCCCchhhhhccCCCCCCC-ChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchhhh
Q psy9090         237 LNLYGTKYHFKYKFKSRSDN-EPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKVGE  313 (488)
Q Consensus       237 ~~i~~~ef~~~~~~~~~~~~-~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~~e  313 (488)
                      +.+++.+|+....-...... --.+|.++|.+++|.|+..+...++-+ |+.|..- .+.++.|++.+|.++||.|+|+|
T Consensus        21 gsi~~~eF~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~E  100 (107)
T d2pvba_          21 DSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE  100 (107)
T ss_dssp             TCCCHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHH
T ss_pred             CCcCHHHHHHHHhcccCCHHHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHHHHHHhCCCCCCcEeHHH
Confidence            45788999876643221110 012899999999999999998877644 4444222 67899999999999999999999


Q ss_pred             Hhhhcc
Q psy9090         314 KIEKCV  319 (488)
Q Consensus       314 ~i~~~~  319 (488)
                      |+.+|.
T Consensus       101 F~~~m~  106 (107)
T d2pvba_         101 FAAMIK  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998874

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.45  E-value=9.7e-07  Score=70.23  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=61.6

Q ss_pred             CCCCCchhhhhccCCCCCCCC-hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchhhh
Q psy9090         237 LNLYGTKYHFKYKFKSRSDNE-PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKVGE  313 (488)
Q Consensus       237 ~~i~~~ef~~~~~~~~~~~~~-ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~~e  313 (488)
                      +.|.+.+|...+.-....... -.+|.++|++++|.|+..+.+.++-+ |..|..- .+.++.|++.+|.++||.++++|
T Consensus        22 ~~i~f~eF~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~d~dG~i~~~E  101 (109)
T d1rwya_          22 DSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE  101 (109)
T ss_dssp             TCCCHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHH
T ss_pred             CCcCHHHHHHHHccccCCHHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHHHHHHHHHhCCCCCCeEeHHH
Confidence            457889998766433221111 12999999999999999999887733 3322212 57799999999999999999999


Q ss_pred             Hhhhcc
Q psy9090         314 KIEKCV  319 (488)
Q Consensus       314 ~i~~~~  319 (488)
                      |+.+|.
T Consensus       102 F~~~m~  107 (109)
T d1rwya_         102 FSTLVA  107 (109)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=1.1e-06  Score=77.14  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQ  278 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q  278 (488)
                      ++.......+...........++..++..+|.++++.|++.||+.............   .+|+++|.+..|.|+..+..
T Consensus        43 i~~~ef~~~~~~~~~~~~~~~~~~~if~~~D~~~~G~I~~~Ef~~~~~~~~~~~~~e~~~~~F~~~D~d~dG~is~~E~~  122 (190)
T d1fpwa_          43 LAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEML  122 (190)
T ss_dssp             EEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEHHHHH
T ss_pred             ccHHHHHHHHHHHCCCCChHHHHHHHHHHhCcCCCCcccHHHHHHHHHHHccCchHHHHHHHHHHhccCCCCcCcHHHHH
Confidence            333344444444443444445566778889999999999999997765433322223   39999999999998888776


Q ss_pred             EEEEc-c-ccc---------CCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         279 HIVLA-G-ETL---------AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       279 ~i~~s-g-esg---------agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      .++.. + ..+         .-..+.++.+++.+|.++||.|+++||+.++..   ++++|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~p~i~~~l~  184 (190)
T d1fpwa_         123 TIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALN  184 (190)
T ss_dssp             HHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHSSTTHHHHHH
T ss_pred             HHHHHHHHhcccccCCCchhhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHCHHHHHHhh
Confidence            65532 1 111         111356889999999999999999999987653   777764

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=97.33  E-value=2.2e-06  Score=61.75  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++|..+|++.+|.|+..+++.++.+ |+... ..+.++.|++.+|.+++|.++|+||+.+|.
T Consensus         6 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~-s~~e~~~~~~~~D~d~dG~i~~~EF~~~m~   66 (68)
T d1c7va_           6 RAFKVFDANGDGVIDFDEFKFIMQKVGEEPL-TDAEVEEAMKEADEDGNGVIDIPEFMDLIK   66 (68)
T ss_dssp             HHHHHHSCSGGGEECHHHHHHHSSTTTTCCC-CHHHHHHHHHHHCSSGGGSEEHHHHHHHHH
T ss_pred             HHHHHHcCCCcCeEcHHHHHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence            4899999999999999999988844 33211 267899999999999999999999999875

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=1.5e-06  Score=62.45  Aligned_cols=63  Identities=10%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         258 PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       258 ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .++|..+|.+.+|.|+..+.+.++-  .-|-. ..+.++.+++.+|.+++|.|+++||+..|.++|
T Consensus         4 r~~F~~~D~d~~G~I~~~El~~~l~--~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~~l   67 (67)
T d1tiza_           4 KRVFEKFDKNKDGKLSLDEFREVAL--AFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKML   67 (67)
T ss_dssp             HHHHHHHCTTSSSCEEHHHHHHHHH--HTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC-
T ss_pred             HHHHHHHCCCCcCcCcHHHHHHHHH--HhccccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhC
Confidence            3699999999999999999998773  22322 368899999999999999999999999887764

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=8.4e-06  Score=67.91  Aligned_cols=85  Identities=11%  Similarity=0.092  Sum_probs=62.3

Q ss_pred             CCCCCCCCCchhhhhccCCCCCCCC------hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhc
Q psy9090         233 PNTHLNLYGTKYHFKYKFKSRSDNE------PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLG  305 (488)
Q Consensus       233 p~~~~~i~~~ef~~~~~~~~~~~~~------ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~  305 (488)
                      ..+.+.+.+.+|...+.........      .++|+.+|.+.+|.|+..+.+.++.+ |+.  =..+.++.|++. +.++
T Consensus        53 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~--~~~~e~~~l~~~-~~d~  129 (145)
T d2mysc_          53 EMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEK--MTEEEVEELMKG-QEDS  129 (145)
T ss_pred             ccccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEEcHHHHHHHHHHhCCC--CCHHHHHHHHhh-cCCC
Confidence            3345678888998766433221111      24999999999999999999998843 331  126778889985 7799


Q ss_pred             CCCchhhhHhhhcch
Q psy9090         306 QGAAKVGEKIEKCVN  320 (488)
Q Consensus       306 ~g~~~~~e~i~~~~~  320 (488)
                      +|.|+|+||+.++..
T Consensus       130 dG~I~y~eF~~~ll~  144 (145)
T d2mysc_         130 NGCINYEAFVKHIMS  144 (145)
T ss_pred             CCeEEHHHHHHHHhc
Confidence            999999999988754

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.22  E-value=1.6e-05  Score=66.27  Aligned_cols=83  Identities=8%  Similarity=0.001  Sum_probs=64.3

Q ss_pred             CCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCch
Q psy9090         236 HLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAK  310 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~  310 (488)
                      .+.+.+++|+..+.........    ..+|+++|++.+|.|+..+.+.++.+ |+  .-..+.+..|+++++.+++|.|+
T Consensus        54 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~g~--~ls~~e~~~~~~~~d~d~dg~I~  131 (145)
T d2mysb_          54 SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGG--RFTPEEIKNMWAAFPPDVAGNVD  131 (145)
T ss_pred             cCceeechhhhhhhhcccccchHHHHHHHHHhhhhcccchhhHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCCCCeEe
Confidence            4567888999877554332222    23999999999999999999998833 43  12378899999999999999999


Q ss_pred             hhhHhhhcch
Q psy9090         311 VGEKIEKCVN  320 (488)
Q Consensus       311 ~~e~i~~~~~  320 (488)
                      |.+|+..|..
T Consensus       132 y~eF~~~l~~  141 (145)
T d2mysb_         132 YKNICYVITH  141 (145)
T ss_pred             HHHHHHHhcc
Confidence            9999988753

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=2.7e-06  Score=67.43  Aligned_cols=82  Identities=13%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             CCCCchhhhhccCCCCCC-CChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCc-hhhHHHHHHHHHHhcCCCchhhhH
Q psy9090         238 NLYGTKYHFKYKFKSRSD-NEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGK-TTSLKHLLKHLIFLGQGAAKVGEK  314 (488)
Q Consensus       238 ~i~~~ef~~~~~~~~~~~-~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagk-te~~k~i~~~~~~~~~g~~~~~e~  314 (488)
                      .+.+.+|........... .--.+|+.+|++.+|.|+..+.+.++.. |..|.-- .+.++.|++.+|.++||.|+++||
T Consensus        23 s~~~~~F~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~l~~~~~~~~~~~~D~d~dG~I~~~EF  102 (108)
T d1rroa_          23 TFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEF  102 (108)
T ss_dssp             CCCHHHHHHHHSGGGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHH
T ss_pred             CccHHHHHHHHccCcCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCeEeHHHH
Confidence            456778765443221111 1113999999999999999998887743 3333222 578999999999999999999999


Q ss_pred             hhhcc
Q psy9090         315 IEKCV  319 (488)
Q Consensus       315 i~~~~  319 (488)
                      +.+|.
T Consensus       103 ~~~m~  107 (108)
T d1rroa_         103 QEMVH  107 (108)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99874

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=3.4e-06  Score=62.05  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|+.+|++.+|.|+..+.+.++-+  .|-. ..+.++.|++.+|.+++|.++|+||+.+|..
T Consensus        14 ~F~~fD~~~~G~I~~~el~~~l~~--lg~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~~m~~   73 (75)
T d1jc2a_          14 CFRIFDKNADGFIDIEELGEILRA--TGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMMEG   73 (75)
T ss_dssp             HHHHHCCSTTSSEEHHHHHHHHHH--SSSCCCHHHHHHHHHHHCSSSCSEECHHHHHHHHHT
T ss_pred             HHHHHcCCCcCeEcHHHHHHHHHh--cCCCccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            999999999999999999988833  2222 2778999999999999999999999988753

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.11  E-value=3.1e-06  Score=60.40  Aligned_cols=58  Identities=12%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      .+|+.+|.+.+|.|+..+.+.++-  .-|-.. .+.++.+++.++.+++|.|+|+||+.+|
T Consensus         7 ~aF~~fD~d~~G~I~~~el~~~l~--~lg~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~~m   65 (65)
T d1fw4a_           7 EAFRVFDKDGNGYISAAELRHVMT--NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM   65 (65)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHHH--HTTCCCCHHHHHHHHHTTCTTCSSSEEHHHHHHHC
T ss_pred             HHHHHHcCCCCCcCCHHHHHHHHH--HhCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHC
Confidence            489999999999999999998873  333233 6779999999999999999999999875

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.08  E-value=5.1e-06  Score=61.24  Aligned_cols=63  Identities=14%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             hhHHHHHHH--HHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSA--YQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~--~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+  .+|.|+..+++.++-+ |+.=.-..+.++.|++.+|.+++|.|+|+||+.+|.++
T Consensus         9 ~~F~~fd~~~~~~G~I~~~El~~~l~~lg~~~~~~~~ei~~~~~~~D~d~dG~I~f~EF~~~m~~~   74 (76)
T d1qx2a_           9 GAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI   74 (76)
T ss_dssp             HHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             HHHHHHcccCCCCCEECHHHHHHHHHHhCCcCCCCHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHH
Confidence            389988764  3689999999988843 43211123469999999999999999999999998765

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=1.4e-06  Score=76.23  Aligned_cols=103  Identities=13%  Similarity=0.106  Sum_probs=73.6

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChh---hHHHHHHHHHHHHhcCCCcEEEEc--cccc------CCc--
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPH---IYAVADSAYQDMMHHEEAQHIVLA--GETL------AGK--  290 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph---~f~~~d~~~~~~~~~~~~q~i~~s--gesg------agk--  290 (488)
                      +..++..+|.++++.|.+.||+............++   +|+++|.++.|.|+..+.+.++-+  +..+      ..+  
T Consensus        62 ~~~if~~~d~~~dg~I~~~EF~~~l~~~~~~~~~e~l~~~F~~~D~d~dG~i~~~El~~~~~~~~~~~~~~~~~~~~~~~  141 (187)
T d1g8ia_          62 ATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENT  141 (187)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC-----CCGGGSS
T ss_pred             HHHHHHHhCcCCCCCCcHHHHHHHHHHhccCchhhhHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhhhcccccCchhhcc
Confidence            344667778888899999999876543332222222   999999999999998887765421  1000      011  


Q ss_pred             -hhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         291 -TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       291 -te~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                       .+.++.|++.+|.++||.|+++||+..+..   +||+|.
T Consensus       142 ~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~p~~~~~l~  181 (187)
T d1g8ia_         142 PEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALS  181 (187)
T ss_dssp             HHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHCHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHCHHHHHHHH
Confidence             356888999999999999999999998763   777763

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.02  E-value=4.7e-06  Score=61.57  Aligned_cols=59  Identities=8%  Similarity=0.058  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|+++|++.+|.|+..+.+.++  ..-|..- .+.++.|++.+|.+++|.|+|+||+.+|.+
T Consensus        14 ~F~~~D~d~~G~I~~~el~~~l--~~~g~~~~~~e~~~~~~~~D~d~~G~I~~~EF~~~m~k   73 (77)
T d1oqpa_          14 AFRLFDDDNSGTITIKDLRRVA--KELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK   73 (77)
T ss_dssp             HHHHHCTTCSSSEEHHHHHHHH--HHHTCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHH
T ss_pred             HHHHHcCCCCCEechHHHHHHH--HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence            9999999999999999999888  3333333 678999999999999999999999988754

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.00  E-value=7.4e-06  Score=61.12  Aligned_cols=62  Identities=11%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+|..+|.+++|.|+..+.+.++-  ..|.. ..+.++.|++.+|.+++|.|+|+||+..|.+.|
T Consensus        18 ~~F~~~D~d~~G~I~~~el~~~l~--~~g~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~~m~~k~   80 (81)
T d1avsa_          18 AAFDMFDADGGGDISTKELGTVMR--MLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM   80 (81)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHHH--HTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCeEchhHHHHHHH--HcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhc
Confidence            389999999999999999998883  23322 266789999999999999999999999886543

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=96.99  E-value=4.7e-06  Score=68.19  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC------hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE------PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKH  296 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~------ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~  296 (488)
                      .+..++..+|.++++.|.+.||...+.........      .++|+++|.+.+|.|+..+.+.++    .+.| .+.+..
T Consensus        37 ~~~~~~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~~----~~~~-~~~~~~  111 (134)
T d1jfja_          37 LLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFF----KKHG-IEKVAE  111 (134)
T ss_dssp             HHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHH----TTTT-CHHHHH
T ss_pred             HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccCCcccHHHHHHHH----HhcC-cHHHHH
Confidence            44455677889999999999999877544332221      238999998888888888777665    2223 357888


Q ss_pred             HHHHHHHhcCCCchhhhHhhhc
Q psy9090         297 LLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       297 i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +++.+|.++||.|+++||+..|
T Consensus       112 ~~~~~D~d~dG~is~~EF~~~~  133 (134)
T d1jfja_         112 QVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             HHHHHHCSSSSEEEHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCHHHHHHHh
Confidence            9999999999999999999876

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=2.4e-06  Score=74.37  Aligned_cols=101  Identities=10%  Similarity=0.075  Sum_probs=68.9

Q ss_pred             CceeeeCCC-CCCCCCCchhhhhccCCC-CCC---CChhhHHHHHHHHHHHHhcCCCcEEEEc--ccc-cCC-chh----
Q psy9090         226 DVLLFINPN-THLNLYGTKYHFKYKFKS-RSD---NEPHIYAVADSAYQDMMHHEEAQHIVLA--GET-LAG-KTT----  292 (488)
Q Consensus       226 ~il~~Inp~-~~~~i~~~ef~~~~~~~~-~~~---~~ph~f~~~d~~~~~~~~~~~~q~i~~s--ges-gag-kte----  292 (488)
                      .++..+|.+ +++.|.+.||+..+.... ...   .-..+|+++|.+++|.|+..+...++-.  |.. +.. ..+    
T Consensus        61 rif~~fd~~~~~g~I~f~EFv~~l~~~~~~~~~~~kl~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~  140 (180)
T d1xo5a_          61 RICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQ  140 (180)
T ss_dssp             HHHHHHCCSTTCCEECHHHHHHHHHHHSTTSCHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHC------CCCCTTHHH
T ss_pred             HHHHhccCCCCCCcCcHHHHHHHHHHHhhcCCHHHHHHHhhccccCCCCCeeeHHHHHHHHHHHHhccccccccHHHHHH
Confidence            345556665 467899999997763221 111   1223899999999999999988876532  221 111 122    


Q ss_pred             hHHHHHHHHHHhcCCCchhhhHhhhcc--h-hhhhhh
Q psy9090         293 SLKHLLKHLIFLGQGAAKVGEKIEKCV--N-VIHAIG  326 (488)
Q Consensus       293 ~~k~i~~~~~~~~~g~~~~~e~i~~~~--~-~leafg  326 (488)
                      -+..+++.+|.++||.|+++||..++.  | ++++|.
T Consensus       141 ~v~~~~~~~D~d~dG~Is~~EF~~~~~~~P~~~~~f~  177 (180)
T d1xo5a_         141 LIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFK  177 (180)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHhCHHHHhhCe
Confidence            356688899999999999999998776  3 888883

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.94  E-value=5.3e-06  Score=70.08  Aligned_cols=117  Identities=11%  Similarity=0.079  Sum_probs=76.5

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCC----CCCCCCh---hhHHHHHHHHHHHHh
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFK----SRSDNEP---HIYAVADSAYQDMMH  273 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~----~~~~~~p---h~f~~~d~~~~~~~~  273 (488)
                      .++...+...++. +........+..++..++++..+.+...++.......    ......+   ++|+.+|.+.+|.|+
T Consensus        31 ~I~~~e~~~~l~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~  109 (156)
T d1dtla_          31 SISTKELGKVMRM-LGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYID  109 (156)
T ss_dssp             SBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEE
T ss_pred             eECHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccCCCccchhhhhhhhhhcccccccccHHHHHHHHHHHhCcCCCCcCc
Confidence            3444444444432 2223333444555667777777777776666433221    1111111   389999999999999


Q ss_pred             cCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         274 HEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       274 ~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ..+.+.++  ...|... .+.++.+++.++.++||.|+|+||+.+|.-
T Consensus       110 ~~e~~~~~--~~~~~~ls~~e~~~i~~~~D~d~dG~I~~~eF~~~l~g  155 (156)
T d1dtla_         110 LEELKIML--QATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG  155 (156)
T ss_dssp             HHHHGGGG--TTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred             HHHHHHHH--hhcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHcC
Confidence            99998877  4444344 677899999999999999999999988753

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=96.93  E-value=8e-06  Score=60.92  Aligned_cols=60  Identities=10%  Similarity=0.084  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|+.+|.+.+|.|+..+.+.++-+  -|.-..+.++.|++.+|.+++|.|+++||+.+|..
T Consensus        10 ~~F~~~D~d~~G~I~~~El~~~l~~--lg~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~~~   69 (81)
T d2opoa1          10 RIFKRFDTNGDGKISSSELGDALKT--LGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARA   69 (81)
T ss_dssp             HHHHHHCTTCSSEEEHHHHHHHHHT--TTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCcHHHHHHHHHH--hhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            4899999999999999999887733  23224677999999999999999999999998754

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=96.89  E-value=7.9e-06  Score=60.96  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|+.+|.+++|.|+..+++.++-+ |+.  -..+.++.|++.+|.+++|.|+|+||+.+|..
T Consensus        20 ~F~~~D~d~~G~I~~~el~~~l~~~g~~--~~~~ev~~~~~~~D~d~dg~I~~~EF~~~m~~   79 (81)
T d1fi5a_          20 LFRMFDKNADGYIDLEELKIMLQATGET--ITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG   79 (81)
T ss_dssp             HHHHHCSSCSSEECHHHHHHHHHTSSSC--CCHHHHHHHHHHHCSSSSSSEEHHHHHHHHSC
T ss_pred             HHHHHcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            999999999999999999988743 331  12677999999999999999999999998764

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.85  E-value=6.3e-06  Score=72.08  Aligned_cols=105  Identities=13%  Similarity=0.142  Sum_probs=74.9

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCCh---hhHHHHHHHHHHHHhcCCCcEEEEc-----cc--------
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEP---HIYAVADSAYQDMMHHEEAQHIVLA-----GE--------  285 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p---h~f~~~d~~~~~~~~~~~~q~i~~s-----ge--------  285 (488)
                      ..+..++..+|.++++.|.+.||+..+..........   .+|+++|.+..|.++..+...++-+     +.        
T Consensus        58 ~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~E~~~~~~~~~~~~~~~~~~~~~~  137 (189)
T d1jbaa_          58 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAE  137 (189)
T ss_dssp             HHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSS
T ss_pred             HHHHHHHHHhccCCCCeEeehhHHHHHHhhcccchHHHHHHHHhhhccCCCCcccHhHHHHHHHHHHHhhccccccchhh
Confidence            4566778899999999999999998775443333222   3999999998888877665543321     00        


Q ss_pred             -ccC--CchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         286 -TLA--GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       286 -sga--gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                       .+.  ...+.++.|++.+|.++||.|+++||+.+|..   +++.|.
T Consensus       138 ~~~~~~~~e~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~i~~~l~  184 (189)
T d1jbaa_         138 QQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQ  184 (189)
T ss_dssp             TTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHH
T ss_pred             hhccccchHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhc
Confidence             000  01356789999999999999999999998863   666653

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.80  E-value=2.1e-06  Score=73.19  Aligned_cols=115  Identities=10%  Similarity=0.080  Sum_probs=79.9

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCC----C---ChhhHHHHHHHHHHHHhc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD----N---EPHIYAVADSAYQDMMHH  274 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~----~---~ph~f~~~d~~~~~~~~~  274 (488)
                      ++..++...+. ..........+..++..+++++.+.+.+.+|+..+.......    .   .-.+|+.+|.+.+|.|+.
T Consensus        37 Is~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~aF~~~D~d~~G~Is~  115 (162)
T d1topa_          37 ISTKELGTVMR-MLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDI  115 (162)
T ss_dssp             EEGGGHHHHHH-HTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCH
T ss_pred             EcHHHHHHHHh-ccCCchhHHHHHhhhheeccCCCCCeeeehhhhhhhhhhhhhcccCcHHHHHHHHHHHCCCCCCCCcH
Confidence            44444443333 223333344555667778888888888888876664332111    0   112899999999999999


Q ss_pred             CCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         275 EEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       275 ~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+.+.++  .+.|-.. .+.++.|++++|.++||.++++||+..|.
T Consensus       116 ~e~~~~l--~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~  159 (162)
T d1topa_         116 EELGEIL--RATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMME  159 (162)
T ss_dssp             HHHHHHH--HTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHH--HhhCCCCCHHHHHHHHHHhCCCCCCcEEHHHHHHHHH
Confidence            9988777  4444333 77889999999999999999999998764

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=96.79  E-value=9.3e-06  Score=70.59  Aligned_cols=94  Identities=10%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCC---CCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHH
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS---DNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLK  299 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~---~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~  299 (488)
                      .+..++...+++..+.+.+.+|+.........   +.-..+|..+|.+..|+|+..+.+.++  .+-| -..+.++.|++
T Consensus        47 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~e~l~~aF~~~D~d~~G~i~~~el~~~l--~~~g-l~~~ev~~~f~  123 (182)
T d1s6ia_          47 EIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQAC--KDFG-LDDIHIDDMIK  123 (182)
T ss_dssp             HHHHHHHHTCTTCSSEECHHHHHHHHTTSSSSCCCCSTHHHHHHTTTTCSSEEEHHHHHHTT--TTTT-CCTTHHHHHHH
T ss_pred             cchhhhhhhhccccccchHHHHHHHHHhhcccccHHHHHHHHHHHhhcCCCccchhhhhhhh--hhcC-ccHHHHHHHHH
Confidence            34455667788888889999998766544332   233459999999999999888887776  3333 24678999999


Q ss_pred             HHHHhcCCCchhhhHhhhcc
Q psy9090         300 HLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|.++||.++|+||+..|.
T Consensus       124 ~~D~d~DG~Is~~EF~~~m~  143 (182)
T d1s6ia_         124 EIDQDNDGQIDYGEFAAMMR  143 (182)
T ss_dssp             HHCSSSSSEEETTHHHHTTS
T ss_pred             HhhcCCCCeEeHHHHHHHHH
Confidence            99999999999999999876

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.79  E-value=5.3e-06  Score=73.33  Aligned_cols=124  Identities=12%  Similarity=0.096  Sum_probs=80.0

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCC---CChhhHHHHHHHHHHHHhcCCCc
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD---NEPHIYAVADSAYQDMMHHEEAQ  278 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~---~~ph~f~~~d~~~~~~~~~~~~q  278 (488)
                      ++.++....+...........++..++..+|.++++.|++.||+.++.......   .-..+|.++|.++.|.|+..+..
T Consensus        43 is~~EF~~~l~~~~~~~~~~~~~~~if~~~D~~~~G~I~f~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~is~~E~~  122 (201)
T d1omra_          43 ITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL  122 (201)
T ss_dssp             EEHHHHHHHHHHHCTTSCCHHHHHHHHHTTTSCSSSEEEHHHHHHHHHHHHSSCGGGSHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             ccHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCCCeEeehhHHHHHHhhcccchHHHHHHHHHHHccCCCCccCHHHHH
Confidence            444444444443333333334455667788889999999999997664322222   12239999999999999888766


Q ss_pred             EEEEc-cc-----cc--CC-----chhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhh
Q psy9090         279 HIVLA-GE-----TL--AG-----KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAI  325 (488)
Q Consensus       279 ~i~~s-ge-----sg--ag-----kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leaf  325 (488)
                      .++-+ ++     ..  ..     ..+.+..|++.+|.++||.|+++||+..+..   +++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~~~~~~~~l  185 (201)
T d1omra_         123 EIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLI  185 (201)
T ss_dssp             HHHHHHHTTSCHHHHTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhhcChhhhhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHCHHHHHHh
Confidence            55432 11     00  00     1234678999999999999999999976543   55554

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=96.72  E-value=1.6e-05  Score=57.91  Aligned_cols=59  Identities=10%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+.+|.|+..+...++-+  -|-. ..+.++.+++.+|.+++|.|+|+||+.+|.+
T Consensus        13 ~F~~~D~d~~G~I~~~el~~~l~~--~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m~~   72 (73)
T d2pq3a1          13 AFSLFDKDGDGTITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR   72 (73)
T ss_dssp             HHHHTCTTSSSEEEGGGHHHHHHH--TTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHcCCCCceEeHHHHHHHHHH--hCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhc
Confidence            899999999999999998887733  2211 2678999999999999999999999988754

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.72  E-value=1.2e-05  Score=69.86  Aligned_cols=103  Identities=10%  Similarity=0.080  Sum_probs=72.8

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCC-CCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc--ccccCCc-----hh
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKS-RSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA--GETLAGK-----TT  292 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~-~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s--gesgagk-----te  292 (488)
                      +..++...+.++++.|++.||+..+.... .....   .-+|.++|.+++|.|+..+...++..  ++.|.-.     .+
T Consensus        56 ~~~lf~~~d~~~dg~I~f~EFl~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~e~~~~~~~~~~~~~~~~~~~~~~~  135 (183)
T d2zfda1          56 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIED  135 (183)
T ss_dssp             HHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHccCCCCcCcHHHHHHHHHhhhccCcHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHhhhhcccchHHHHH
Confidence            34556777888889999999997653321 11111   12999999999999998888776542  2323111     23


Q ss_pred             hHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhhh
Q psy9090         293 SLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAIG  326 (488)
Q Consensus       293 ~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leafg  326 (488)
                      .++.+++.+|.++||.++++||...+..   ++++|.
T Consensus       136 ~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~~~~~~~  172 (183)
T d2zfda1         136 IIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMT  172 (183)
T ss_dssp             HHHHHHHHHCSSCSSEECHHHHHHHHHHSGGGGGGGC
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHHCHHHHHHcC
Confidence            3667889999999999999999988754   677764

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=96.71  E-value=1.3e-05  Score=59.94  Aligned_cols=59  Identities=12%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             hHHHHHHHH-HHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAY-QDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~-~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.++ +|.|+..+++.++-+ |..  -..+.++.|++++|.+++|.++|+||+..|.+
T Consensus        20 ~F~~fD~d~~~G~I~~~el~~~l~~lg~~--~t~~el~~~i~~~D~d~~G~I~f~eFl~im~~   80 (82)
T d1wrka1          20 AFDIFVLGAEDGSISTKELGKVMRMLGQN--PTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR   80 (82)
T ss_dssp             HHHHHTTTCTTSSBCHHHHHHHHHHTTCC--CCHHHHHHHHHTTCTTCCSSBCHHHHHHHHHH
T ss_pred             HHHHHcCcCCCCeEeHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHh
Confidence            899999996 589999999988832 331  13778999999999999999999999998864

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.61  E-value=1.1e-05  Score=66.90  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             eCCCCCCCCCCchhhhhccCCCCCCC--Ch----hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHH
Q psy9090         231 INPNTHLNLYGTKYHFKYKFKSRSDN--EP----HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIF  303 (488)
Q Consensus       231 Inp~~~~~i~~~ef~~~~~~~~~~~~--~p----h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~  303 (488)
                      ++.+..+.+.+.+|+..+........  .+    ++|+++|.+.+|.|+..+.+.++-+ |+.  =..+.++.|++.++.
T Consensus        46 ~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~--lt~~e~~~l~~~~d~  123 (140)
T d1ggwa_          46 IESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEK--LSNEEMDELLKGVPV  123 (140)
T ss_dssp             HHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSC--SCHHHHHHHHHHTTC
T ss_pred             hhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHcCCC--CCHHHHHHHHHhhCC
Confidence            34555677889999987754433222  22    3899999999999999999998832 431  136779999999997


Q ss_pred             hcCCCchhhhHhhhcc
Q psy9090         304 LGQGAAKVGEKIEKCV  319 (488)
Q Consensus       304 ~~~g~~~~~e~i~~~~  319 (488)
                      + +|.|+|+||+.+|.
T Consensus       124 ~-dG~I~y~eF~~~m~  138 (140)
T d1ggwa_         124 K-DGMVNYHDFVQMIL  138 (140)
T ss_dssp             S-SCCSTTTHHHHHHH
T ss_pred             C-CCEEeHHHHHHHHh
Confidence            7 99999999998764

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=96.61  E-value=4.7e-05  Score=57.38  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      .+|..+|.+.+|.|+..+.+.++-+  .|.- ..+.++.|++.+|.+++|.++|+||+.+|.
T Consensus        27 ~~F~~~D~d~~G~I~~~el~~~l~~--lg~~~s~~e~~~l~~~~D~d~~g~I~~~EFl~am~   86 (87)
T d1s6ja_          27 ELFKMIDTDNSGTITFDELKDGLKR--VGSELMESEIKDLMDAADIDKSGTIDYGEFIAATV   86 (87)
T ss_dssp             THHHHHCTTCSSCEEHHHHHHHHHT--TTSSCCHHHHHHHHHHHCTTCSSEECHHHHTTCCC
T ss_pred             HHHHHHcCCCCCcCcHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHHc
Confidence            4999999999999999999888733  2211 267899999999999999999999998773

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=1.1e-05  Score=68.82  Aligned_cols=95  Identities=9%  Similarity=0.043  Sum_probs=68.5

Q ss_pred             CceeeeCCCCCCCCCCchhhhhccCCCCCCCC----hhhHHHHHHHHHHHHhcCCCcEEEEc--ccccCC--chhhHHHH
Q psy9090         226 DVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE----PHIYAVADSAYQDMMHHEEAQHIVLA--GETLAG--KTTSLKHL  297 (488)
Q Consensus       226 ~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~----ph~f~~~d~~~~~~~~~~~~q~i~~s--gesgag--kte~~k~i  297 (488)
                      .++..+|+++.+.|++.||+..+.........    ..+|+.+|.+.+|.|+..+...++..  |+.-..  ..+.++.+
T Consensus        52 ~l~~~~d~~~~g~i~~~EFl~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~  131 (165)
T d1auib_          52 RVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKT  131 (165)
T ss_dssp             HHHHHHCTTCSSSEEHHHHHHHHGGGCTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHccccchhhhhhhhhhhccccccchhhHHHHHHHHHHhcccccccccHHHHHHHHHHhccccCchHHHHHHHHHH
Confidence            34556688888999999999877654333222    22899999999998888877766532  321111  14447789


Q ss_pred             HHHHHHhcCCCchhhhHhhhcch
Q psy9090         298 LKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       298 ~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ++++|.++||.++++||+.+|..
T Consensus       132 ~~~~D~~~dG~Is~~EF~~i~~~  154 (165)
T d1auib_         132 IINADKDGDGRISFEEFCAVVGG  154 (165)
T ss_dssp             HHHHCTTSSSSEEHHHHHHHHGG
T ss_pred             HHHcCCCCCCcEeHHHHHHHHhc
Confidence            99999999999999999987763

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.56  E-value=1.1e-05  Score=67.82  Aligned_cols=88  Identities=13%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             eeCCCCCCCCCCchhhhhccCCCCCC-CC-h---hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHH
Q psy9090         230 FINPNTHLNLYGTKYHFKYKFKSRSD-NE-P---HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIF  303 (488)
Q Consensus       230 ~Inp~~~~~i~~~ef~~~~~~~~~~~-~~-p---h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~  303 (488)
                      ..++++.+.|.+.+|+..+....... .. .   ++|+.+|.+.+|.|+..+.+.++-+  .|-.- .+.++.|++.++.
T Consensus        52 ~~~~~~~~~i~~~eFl~~~~~~~~~~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~--~g~~ls~~e~~~l~~~~d~  129 (152)
T d1wdcc_          52 GTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTA--LGERLSDEDVDEIIKLTDL  129 (152)
T ss_dssp             CCSSTTSCEECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHH--SSSCCCHHHHHHHHHHHTC
T ss_pred             hhhccccccccccccccccccccccchhHHHhhhhhhhccccccCccchHHHHHHHHHH--cCCCCCHHHHHHHHHHhcc
Confidence            45666777899999998775432221 11 1   3899999999999999999988832  23222 6679999999986


Q ss_pred             h--cCCCchhhhHhhhcc
Q psy9090         304 L--GQGAAKVGEKIEKCV  319 (488)
Q Consensus       304 ~--~~g~~~~~e~i~~~~  319 (488)
                      +  ++|.++|+||+..|.
T Consensus       130 ~~d~~G~I~y~eF~~~~~  147 (152)
T d1wdcc_         130 QEDLEGNVKYEDFVKKVM  147 (152)
T ss_dssp             CCCTTSEEEHHHHHHHHH
T ss_pred             CCCCCCEEEHHHHHHHHh
Confidence            5  457899999997753

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=96.55  E-value=3.3e-05  Score=58.88  Aligned_cols=64  Identities=8%  Similarity=0.046  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEc-cc--ccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLA-GE--TLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~s-ge--sgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|..+|.+ .|.|+..+.+.++-. +.  .+.. ..+.++.||+.+|.++||.|+++||+.++..+.-|
T Consensus        14 ~F~~yd~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l~~~   81 (92)
T d1a4pa_          14 TFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIA   81 (92)
T ss_dssp             HHHHHHGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC-CCEEcHHHHHHHHHHhccccccccCCHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence            77777877 799999999988742 11  1111 25678999999999999999999999998877644

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=8.5e-06  Score=60.11  Aligned_cols=61  Identities=10%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|..+|.+.+|.|+..++..++-+  .|-. ..+.++.|++.++.+++|.|+++||+.+|.+.
T Consensus        14 ~~F~~~D~d~~G~I~~~el~~~l~~--~g~~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~m~~~   75 (77)
T d1f54a_          14 EAFALFDKDNNGSISSSELATVMRS--LGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQ   75 (77)
T ss_dssp             HHHHHTCTTCSSEEEHHHHHHHHHH--HTCCCCHHHHHHHHHTTCCSSCCEEEHHHHHHHHTTS
T ss_pred             HHHHHHcCCCCCeEChHHHHHHHHH--hCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence            3899999999999999999887732  2322 26779999999999999999999999988654

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.54  E-value=7e-06  Score=71.16  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=69.4

Q ss_pred             ccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCC---hhhHHHHHHHHHHHHhcCCCcEEEEc------ccc----c-C
Q psy9090         223 FVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNE---PHIYAVADSAYQDMMHHEEAQHIVLA------GET----L-A  288 (488)
Q Consensus       223 ~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~---ph~f~~~d~~~~~~~~~~~~q~i~~s------ges----g-a  288 (488)
                      .+..++...+.++++.+++.||+............   -++|..+|.+..|.|+..+...++-+      +..    + .
T Consensus        60 ~~~~lf~~~d~~~~g~i~~~eFl~~~~~~~~~~~~~~~~~~f~~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~  139 (181)
T d1bjfa_          60 FAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDES  139 (181)
T ss_dssp             HHHHHHHHHCSSCSSEEEHHHHHHHHHHHTSSCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGS
T ss_pred             HHHHHHHhcCCCCCCcEeHHHHHHHHHHHhhhchHHHHHHHHHHhccCCCCeecHHHHHHHHHHHhhhccccccCCcccc
Confidence            34556778888888899999998765443322211   23999999999888877766554421      000    1 1


Q ss_pred             CchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         289 GKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       289 gkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .-.+.++.|++.+|.++||.|+++||+..+..
T Consensus       140 ~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~  171 (181)
T d1bjfa_         140 TPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS  171 (181)
T ss_dssp             SHHHHHHHHHHHSCTTCSSEECHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            12457889999999999999999999988753

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=7.1e-06  Score=68.46  Aligned_cols=90  Identities=10%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             eeeeCCCCCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHH
Q psy9090         228 LLFINPNTHLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLI  302 (488)
Q Consensus       228 l~~Inp~~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~  302 (488)
                      +...+.++...+.+.+|............+.    .+|..+|++.+|.|+..+.+.++.  .-|.. ..+.++.|+++++
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~--~~g~~~~~~~~~~~~~~~d  129 (146)
T d1lkja_          52 MNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLT--SIGEKLTDAEVDDMLREVS  129 (146)
T ss_dssp             HHHHCSSSCCEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHH--HHTCSCCHHHHHHHHHHHC
T ss_pred             HHHhccCCcccccHHHHHHHHHHhhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH--HcCCcccHHHHHHHHHhcc
Confidence            3334444455556667766554333322222    399999999999999999988773  33322 3778999999999


Q ss_pred             HhcCCCchhhhHhhhcch
Q psy9090         303 FLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       303 ~~~~g~~~~~e~i~~~~~  320 (488)
                       +++|.|+|+||+.+|++
T Consensus       130 -d~dG~I~~~eF~~~m~k  146 (146)
T d1lkja_         130 -DGSGEINIQQFAALLSK  146 (146)
T ss_dssp             -CSSSEEEHHHHHHHHCC
T ss_pred             -CCCCeEeHHHHHHHhCC
Confidence             99999999999998864

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=96.50  E-value=3.4e-05  Score=59.01  Aligned_cols=66  Identities=11%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             hHHHH-HHHHH-HHHhcCCCcEEEEc-cccc---CCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhh
Q psy9090         260 IYAVA-DSAYQ-DMMHHEEAQHIVLA-GETL---AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI  325 (488)
Q Consensus       260 ~f~~~-d~~~~-~~~~~~~~q~i~~s-gesg---agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leaf  325 (488)
                      +|..+ |+++. |.|+..|++.++.. +...   ....+.++.||+.+|.++||.|+|+||+.+|..+.-++
T Consensus        14 ~F~~y~d~dg~~G~is~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~Idf~EF~~lm~~l~~~~   85 (93)
T d1zfsa1          14 VFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC   85 (93)
T ss_dssp             HHHHHGGGSSCCSSEEHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTTTCCSEECSHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCCCCCEecHHHHHHHHHHhcccccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Confidence            55543 77764 78999999888743 2222   12368899999999999999999999999988776553

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.46  E-value=9.6e-06  Score=56.88  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=47.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIE  316 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~  316 (488)
                      .+|..+|++.+|+|+..+.+.++-.  -|... .+.++.|++.++.+++|.|+|+|||.
T Consensus         5 ~aF~~fD~~~~G~I~~~el~~~l~~--~g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl~   61 (61)
T d2fcea1           5 KAFQVFDKESTGKVSVGDLRYMLTG--LGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE   61 (61)
T ss_dssp             HHHHHHCTTCCSCEEHHHHHHHHHH--TTCCCCHHHHHHHHTTCCCCTTSEECHHHHHH
T ss_pred             HHHHHHCCCCCCeEeHHHHHHHHHH--cCCCCCHHHHHHHHHHcCCCCCCcEeHHHhcC
Confidence            4899999999999999999988843  22222 78899999999999999999999984

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=96.42  E-value=6.1e-06  Score=68.73  Aligned_cols=114  Identities=9%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             cchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCC----CCChhhHHHHHHHHHHHHhcCCC
Q psy9090         202 ISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRS----DNEPHIYAVADSAYQDMMHHEEA  277 (488)
Q Consensus       202 l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~----~~~ph~f~~~d~~~~~~~~~~~~  277 (488)
                      ++.+++...+.. .........+..++..+|.++.+.+.+.+|+.........    ..-..+|..+|.+.+|.|+..+.
T Consensus        26 Is~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~  104 (146)
T d1exra_          26 ITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAEL  104 (146)
T ss_dssp             ECHHHHHHHHHH-HTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCSSCBCHHHH
T ss_pred             ECHHHHHHHHHh-cCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhccChHHHHHHHHHHhCCCCCCcCCHHHH
Confidence            444444443332 2233334455666777889999999999998765322111    11123999999999999999998


Q ss_pred             cEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         278 QHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       278 q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +.++  ...|-. ..+.+..++++++.++||.++|+||+..+
T Consensus       105 ~~~l--~~~~~~~~~~~~~~i~~~~D~d~dG~i~~~eF~~~l  144 (146)
T d1exra_         105 RHVM--TNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM  144 (146)
T ss_dssp             HHHH--HHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred             HHHH--HHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence            8877  333322 36789999999999999999999999865

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=9.1e-06  Score=70.21  Aligned_cols=125  Identities=11%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             ccchhhHHHHHHhhhccCCcccccCCceeeeCCCCCCCCCCchhhhhccCCCCCC---CChhhHHHHHHHHHHHHhcCCC
Q psy9090         201 TISEDNIVQELEERHNSKNHYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD---NEPHIYAVADSAYQDMMHHEEA  277 (488)
Q Consensus       201 ~l~e~~l~~~L~~r~~~~~~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~---~~ph~f~~~d~~~~~~~~~~~~  277 (488)
                      .++.++...-+...........++..++..+|.++++.|.+.||+..+.......   .-.++|.++|.+..|.++..+.
T Consensus        30 ~is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~~~~g~I~~~EFl~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~  109 (178)
T d1s6ca_          30 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEM  109 (178)
T ss_dssp             EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             CccHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHHhccchHHHHHHHHHhhccCCCCeecHHHH
Confidence            4555555555554444444444556678888999999999999987663222111   1223999999988887776655


Q ss_pred             cEEEEc-----cc------ccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch---hhhhh
Q psy9090         278 QHIVLA-----GE------TLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN---VIHAI  325 (488)
Q Consensus       278 q~i~~s-----ge------sgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~---~leaf  325 (488)
                      ...+-+     +.      +-....+.++.|++.+|.++||.|+++||..++..   +|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~~i~~~~~~~~~l  171 (178)
T d1s6ca_         110 MDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSL  171 (178)
T ss_dssp             HHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHCHHHHHHh
Confidence            432211     10      00112456788999999999999999999987664   45543

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=9.6e-06  Score=70.41  Aligned_cols=94  Identities=11%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccC-CchhhHHHHHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLA-GKTTSLKHLLKH  300 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesga-gkte~~k~i~~~  300 (488)
                      ..+..++..+|.++.+.|.+.||+..+....   ....+|..+|.+++|.|+..+.+.++.+  .|. -..+.++.+++.
T Consensus        56 ~~~~~l~~~~D~d~~g~i~~~EFl~~~~~~~---~~~~~f~~~D~~~~G~i~~~el~~~l~~--~~~~l~~e~~~~~~~~  130 (181)
T d1hqva_          56 VTVRSIISMFDRENKAGVNFSEFTGVWKYIT---DWQNVFRTYDRDNSGMIDKNELKQALSG--FGYRLSDQFHDILIRK  130 (181)
T ss_dssp             HHHHHHHHHHCCSSSSSBCHHHHHHHHHHHH---HHHHHHHHHCTTCCSSBCHHHHHHHHHH--HTBCCCHHHHHHHHHH
T ss_pred             HHHHHHhhccccccccchhhhHHHhhhhhcc---ccccccccccccccchhhhHHHHHHHHH--cCCcchhHHHHHHHHH
Confidence            3444556677888889999999998775432   1235999999999999999998887733  222 237788999999


Q ss_pred             HHHhcCCCchhhhHhhhcch
Q psy9090         301 LIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       301 ~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ++.+++|.++|+||+..+..
T Consensus       131 ~d~~~dg~Is~~eF~~~~~~  150 (181)
T d1hqva_         131 FDRQGRGQIAFDDFIQGCIV  150 (181)
T ss_dssp             HCSSCSSCBCHHHHHHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHHHH
Confidence            99999999999999987753

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=96.35  E-value=4.4e-05  Score=58.90  Aligned_cols=65  Identities=17%  Similarity=0.081  Sum_probs=47.3

Q ss_pred             HHHH-HHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhccc
Q psy9090         265 DSAY-QDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNAG  329 (488)
Q Consensus       265 d~~~-~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna~  329 (488)
                      |+++ .|.|+..+++.++-. +.......+.++.||+.+|.|+||.|+|+||+.++..+.-+.=.++
T Consensus        25 d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~~l~~~~D~d~DG~IdF~EF~~l~~~l~~~~~k~~   91 (98)
T d1yuta1          25 RQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEIRKKK   91 (98)
T ss_dssp             TTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHHHHHHHHCTTCCSCBCHHHHHHHHHHHHHHHHHTB
T ss_pred             ccCCCCCEEcHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHhHHH
Confidence            4555 488999998887732 1111112456999999999999999999999999988766543333

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=96.29  E-value=6.9e-05  Score=57.11  Aligned_cols=63  Identities=8%  Similarity=0.043  Sum_probs=45.5

Q ss_pred             hHH-HHHHHHHH-HHhcCCCcEEEEc-ccccCC---chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         260 IYA-VADSAYQD-MMHHEEAQHIVLA-GETLAG---KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       260 ~f~-~~d~~~~~-~~~~~~~q~i~~s-gesgag---kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      +|. .+|+++.+ .|+..+.+.+|-+ +.+..|   ..+.++.||+.+|.|+||.|+|+||+.+|..+.
T Consensus        14 vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l~   82 (93)
T d1ksoa_          14 TFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLC   82 (93)
T ss_dssp             HHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHH
T ss_pred             HHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHH
Confidence            443 34666776 4888888876632 111112   377899999999999999999999998887654

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.19  E-value=2.6e-05  Score=64.65  Aligned_cols=82  Identities=11%  Similarity=0.036  Sum_probs=61.7

Q ss_pred             CCCCCCCchhhhhccCCCCCCCCh----hhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHHHHHhcCCCc
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDNEP----HIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKHLIFLGQGAA  309 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~~p----h~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~~~~~~~g~~  309 (488)
                      ..+.+.+.+|+..+..+.....+.    .+|+.+|++.+|.|+..+.+.++.+ |+.  =..+.+..|++.++.+ +|.|
T Consensus        52 ~~~~i~~~eF~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~--lt~~e~~~l~~~~d~~-~G~I  128 (142)
T d1wdcb_          52 APGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDN--FNKDEMRMTFKEAPVE-GGKF  128 (142)
T ss_dssp             SSSCCCHHHHHHHHHHHTCSCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSC--CCHHHHHHHHHHCCEE-TTEE
T ss_pred             ccCccccccccccccccccccchhhhHHHhhhhhcccCCCcccHHHHHHHHHHcccc--CCHHHHHHHHHHhCCC-CCEE
Confidence            346688899998775443332222    2899999999999999999988732 331  1367799999999877 6999


Q ss_pred             hhhhHhhhcc
Q psy9090         310 KVGEKIEKCV  319 (488)
Q Consensus       310 ~~~e~i~~~~  319 (488)
                      +|+||+.+|.
T Consensus       129 ~y~eF~~~l~  138 (142)
T d1wdcb_         129 DYVKFTAMIK  138 (142)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            9999998874

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=96.17  E-value=9.6e-06  Score=70.92  Aligned_cols=92  Identities=8%  Similarity=-0.007  Sum_probs=65.6

Q ss_pred             CCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHh
Q psy9090         225 GDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFL  304 (488)
Q Consensus       225 ~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~  304 (488)
                      ..++..+|.+++|.|.+.||...+.....   --.+|..+|++.+|.|+..+.+.++-  +.|..-++....+|-..+.+
T Consensus        66 ~~li~~~D~d~~G~i~~~EF~~l~~~~~~---~~~~F~~~D~d~sG~i~~~El~~~l~--~~g~~~~~~~~~~l~~~~~~  140 (188)
T d1qxpa2          66 RSMVNLMDRDGNGKLGLVEFNILWNRIRN---YLTIFRKFDLDKSGSMSAYEMRMAIE--AAGFKLPCQLHQVIVARFAD  140 (188)
T ss_dssp             HHHHHHHCC--CCCCCSSSHHHHHHHHHH---HHHHHGGGCTTCCSCCBHHHHHHHHH--HTTEECCHHHHHHHHHHTSC
T ss_pred             HHHHHHhcCCCCCcccHHHHHHHHhhhHH---HHHHHHHhCCCCCCEECHHHHHHHHH--HhhhcCCHHHHHHHHHHhcC
Confidence            44566778889999999999977643211   12489999999999999999998883  32322244455555555678


Q ss_pred             cCCCchhhhHhhhcchh
Q psy9090         305 GQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       305 ~~g~~~~~e~i~~~~~~  321 (488)
                      ++|.++|+|||.+|..+
T Consensus       141 ~dg~i~f~eFi~~~~~l  157 (188)
T d1qxpa2         141 DELIIDFDNFVRCLVRL  157 (188)
T ss_dssp             SSSBCCHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHH
Confidence            99999999999987653

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=2.2e-05  Score=60.83  Aligned_cols=62  Identities=11%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             hh-hHHHHHHHHHHHHhcCCCcEEEEc-cc--ccCC------------chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         258 PH-IYAVADSAYQDMMHHEEAQHIVLA-GE--TLAG------------KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       258 ph-~f~~~d~~~~~~~~~~~~q~i~~s-ge--sgag------------kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      |. +|+.+|.+++|.|+..+.+.++.+ ++  +.+.            ..+.++.+++.+|.|+||.|+++||+.++.
T Consensus        18 ~r~~F~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~~   95 (99)
T d1snla_          18 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQ   95 (99)
T ss_dssp             HHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence            44 999999999999999988877632 11  0000            123477899999999999999999998875

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=96.11  E-value=1.6e-05  Score=69.25  Aligned_cols=92  Identities=9%  Similarity=-0.006  Sum_probs=69.4

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIF  303 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~  303 (488)
                      +..++..+|.++++.|.+.||...+....   .--.+|+.+|++.+|.|+..+.+.++-.  .|---+.....++...+.
T Consensus        63 ~~~l~~~~D~d~~G~I~~~EF~~~~~~~~---~~~~~F~~~D~d~sG~I~~~El~~~l~~--~g~~~~~~~~~~~~~~d~  137 (186)
T d1df0a1          63 CKIMVDMLDEDGSGKLGLKEFYILWTKIQ---KYQKIYREIDVDRSGTMNSYEMRKALEE--AGFKLPCQLHQVIVARFA  137 (186)
T ss_dssp             HHHHHHHHCCSSSSEECHHHHHHHHHHHH---HHHHHHHHHCTTCCSCEEGGGHHHHHHH--TTEECCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHhHH---HHHHHHHhhCCCCCCcccHHHHHHHHHH--HHhcccHHHHHHHHHHHc
Confidence            45566778889999999999997764321   1124999999999999999999988832  221124455567777899


Q ss_pred             hcCCCchhhhHhhhcch
Q psy9090         304 LGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       304 ~~~g~~~~~e~i~~~~~  320 (488)
                      +++|.++|+||+..|..
T Consensus       138 d~dg~I~f~eFi~~~~~  154 (186)
T d1df0a1         138 DDELIIDFDNFVRCLVR  154 (186)
T ss_dssp             CSTTEECHHHHHHHHHH
T ss_pred             CCCCeEeHHHHHHHHHH
Confidence            99999999999987765

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=5.5e-05  Score=64.44  Aligned_cols=90  Identities=10%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLI  302 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~  302 (488)
                      +..++...|.++++.|.+.||...+....   .-..+|+.+|++.+|.|+..+.+.++  -+.|-- ..+.++.|++..+
T Consensus        42 ~~~li~~~D~~~~G~i~~~EF~~l~~~~~---~~~~~F~~fD~d~sG~I~~~El~~~l--~~~G~~l~~~~~~~l~~~~d  116 (165)
T d1k94a_          42 CRIMIAMLDRDHTGKMGFNAFKELWAALN---AWKENFMTVDQDGSGTVEHHELRQAI--GLMGYRLSPQTLTTIVKRYS  116 (165)
T ss_dssp             HHHHHHHHCTTCSSCBCHHHHHHHHHHHH---HHHHHHHHHCTTCCSBCCHHHHHHHH--HHTTCCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHhhccc---hhHHHHHHhCCCCCCeEcHHHHHHHH--HHhhhcCCHHHHHHHHHHcC
Confidence            44556668999999999999998764321   11349999999999999999999888  333321 2677888988774


Q ss_pred             HhcCCCchhhhHhhhcch
Q psy9090         303 FLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       303 ~~~~g~~~~~e~i~~~~~  320 (488)
                        .+|.++|+||+..|..
T Consensus       117 --~~g~i~~~eFi~~~~~  132 (165)
T d1k94a_         117 --KNGRIFFDDYVACCVK  132 (165)
T ss_dssp             --BTTBCBHHHHHHHHHH
T ss_pred             --CCCcCcHHHHHHHHHH
Confidence              6789999999986654

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=1.2e-05  Score=66.29  Aligned_cols=97  Identities=8%  Similarity=0.021  Sum_probs=71.0

Q ss_pred             cccccCCceeeeCCCCCCCCCCchhhhhccCCCCCC----CChhhHHHHHHHHHHHHhcCCCcEEEEccccc-CCchhhH
Q psy9090         220 HYSFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSD----NEPHIYAVADSAYQDMMHHEEAQHIVLAGETL-AGKTTSL  294 (488)
Q Consensus       220 ~yt~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~----~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesg-agkte~~  294 (488)
                      ....+..++..+|+++.+.+.+.+|...+.......    .--.+|..+|.+.+|.++..+.+.++  ...| .-..+.+
T Consensus        40 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~d~~~~G~i~~~el~~~l--~~~g~~l~~~e~  117 (141)
T d2obha1          40 KKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVA--KELGENLTDEEL  117 (141)
T ss_dssp             CHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHH--HHTTCCCCHHHH
T ss_pred             hHHHHHHHHHhhccCCCCeechHHHHHHHHHHHhhhccHHHHHHHHHHhcccCCCCccHHHHHHHH--HHhCCCCCHHHH
Confidence            334445556677788888888889887664332111    11249999999999999998888777  3333 1237789


Q ss_pred             HHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         295 KHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       295 k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      ..+++.++.+++|.++|+||+.+|
T Consensus       118 ~~l~~~~D~d~dG~i~~~EF~~~m  141 (141)
T d2obha1         118 QEMIDEADRDGDGEVSEQEFLRIM  141 (141)
T ss_dssp             HHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCEeHHHHHHhC
Confidence            999999999999999999999875

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=95.72  E-value=4.8e-05  Score=65.87  Aligned_cols=94  Identities=12%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             cccCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEc-ccccCCchhhHHHHHHH
Q psy9090         222 SFVGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLA-GETLAGKTTSLKHLLKH  300 (488)
Q Consensus       222 t~v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~s-gesgagkte~~k~i~~~  300 (488)
                      ..+..++..+|.++.+.|.+.+|...+....   .-.++|..+|.+.+|.|+..+.+.++.. |.  .-..+.++.+++.
T Consensus        54 ~~~~~l~~~~d~d~~~~i~~~ef~~~~~~~~---~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~--~ls~~e~~~i~~~  128 (182)
T d1y1xa_          54 ATTEKLLHMYDKNHSGEITFDEFKDLHHFIL---SMREGFRKRDSSGDGRLDSNEVRAALLSSGY--QVSEQTFQALMRK  128 (182)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH---HHHHHHHHHCTTSSSCBCHHHHHHHHHTTSC--CCCHHHHHHHHHH
T ss_pred             hhhhhhhcccccccccccccccccccccccc---ccccchhccccccchhhhhHHHHHHHHHhCC--chhHHHHHHHHhh
Confidence            3344555566777788899999986554321   1245899999999999998888777732 32  1237889999999


Q ss_pred             HHHhcCCCchhhhHhhhcch
Q psy9090         301 LIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       301 ~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|.+++|.++++||+..|..
T Consensus       129 ~d~~~dg~I~~~eF~~~~~~  148 (182)
T d1y1xa_         129 FDRQRRGSLGFDDYVELSIF  148 (182)
T ss_dssp             HCTTCSSSBCHHHHHHHHHH
T ss_pred             cccCCCCCcCHHHHHHHHHH
Confidence            99999999999999998864

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.71  E-value=6.7e-05  Score=64.25  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=69.4

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIF  303 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~  303 (488)
                      +..++...+.++++.|.+.+|...+....   ....+|+.+|.+.+|.|+..+...++  ...|-.-++....++...+.
T Consensus        49 ~~~l~~~~d~d~~g~i~~~ef~~~~~~~~---~~~~~f~~~D~d~~G~I~~~el~~~L--~~~g~~~~~~~~~~~~~~d~  123 (173)
T d1alva_          49 CRSMVAVMDSDTTGKLGFEEFKYLWNNIK---KWQAIYKQFDVDRSGTIGSSELPGAF--EAAGFHLNEHLYSMIIRRYS  123 (173)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHHHH---HHHHHHHHHCTTCCSSBCTTTHHHHH--HHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCCcccchhhhhhhhhhh---HHHHHHHHhccCCCCeecHHHHHHHH--HHHHHhhHHHHHHHhhcccc
Confidence            34456677888889999999987664321   12359999999999999999998877  33333345666666667788


Q ss_pred             hcCCCchhhhHhhhcch
Q psy9090         304 LGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       304 ~~~g~~~~~e~i~~~~~  320 (488)
                      +++|.++++||+.+|..
T Consensus       124 d~~G~i~~~EF~~~~~~  140 (173)
T d1alva_         124 DEGGNMDFDNFISCLVR  140 (173)
T ss_dssp             CSSSCBCHHHHHHHHHH
T ss_pred             CCCCeEeHHHHHHHHHH
Confidence            99999999999998865

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.66  E-value=4.7e-05  Score=56.09  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=44.8

Q ss_pred             hHHHHHH--HHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         260 IYAVADS--AYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       260 ~f~~~d~--~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +|..+|.  +..|.|+..+.+.++-+=-.+-.+ .+.++.||+.+|.++||.|+|+||+.+|.++
T Consensus        12 ~F~~y~~~d~~~g~is~~Elk~ll~~~~~~~~~~~~~v~~~~~~~D~d~dG~Idf~EF~~l~~~l   76 (78)
T d1cb1a_          12 IFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI   76 (78)
T ss_dssp             HHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHccCCCCCCEECHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            7776653  335788888888777331011122 4568999999999999999999999988664

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.00024  Score=54.31  Aligned_cols=64  Identities=14%  Similarity=0.060  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhh
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI  325 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leaf  325 (488)
                      ++|..+|++.+|.|+..+...++  -.+|. ..+.++.|++.+|.+++|.++++||+.+|.-+-.+-
T Consensus        14 ~~F~~~D~d~~G~is~~e~~~~l--~~~~l-~~~~l~~i~~~~D~d~dG~l~~~EF~~am~Li~~~~   77 (95)
T d1c07a_          14 EIFLKTDKDMDGFVSGLEVREIF--LKTGL-PSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKL   77 (95)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHH--HTTTC-CHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCcHHHHHHHH--HhcCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHH
Confidence            48999999999999988888777  33443 256799999999999999999999998885443333

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=95.23  E-value=0.00022  Score=61.10  Aligned_cols=87  Identities=11%  Similarity=0.052  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCchhhhhccCCC-----CCCC-------ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHH
Q psy9090         232 NPNTHLNLYGTKYHFKYKFKS-----RSDN-------EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLK  299 (488)
Q Consensus       232 np~~~~~i~~~ef~~~~~~~~-----~~~~-------~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~  299 (488)
                      ++++.+.+..++|..++....     ....       -..+|+.+|.+.+|.|+..+.+.++-  ..|. ..+.++.|++
T Consensus        70 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~--~~~l-~~~~~~~~f~  146 (185)
T d2sasa_          70 DINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCK--NFQL-QCADVPAVYN  146 (185)
T ss_dssp             CTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTT--SSCC-CCSSHHHHHH
T ss_pred             CcCCCCcEeeeHhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHHHHH--HcCC-CHHHHHHHHH
Confidence            344455566677776553211     0000       12399999999999999999888762  2221 2477999999


Q ss_pred             HHHHhcCCCchhhhHhhhcchh
Q psy9090         300 HLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       300 ~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      .+|.+++|.++++||+.+....
T Consensus       147 ~~D~d~dG~i~~~EF~~~~~~f  168 (185)
T d2sasa_         147 VITDGGKVTFDLNRYKELYYRL  168 (185)
T ss_dssp             HHHTTTTSCCSHHHHHHHHHHH
T ss_pred             HcCCCCCCCCcHHHHHHHHHHH
Confidence            9999999999999999877554

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=95.10  E-value=0.0048  Score=46.04  Aligned_cols=60  Identities=7%  Similarity=0.006  Sum_probs=41.2

Q ss_pred             HHHHHH-HHhcCCCcEEEEcc-cccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         265 DSAYQD-MMHHEEAQHIVLAG-ETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       265 d~~~~~-~~~~~~~q~i~~sg-esgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      |+++.+ .++..+.+..+-+- ..|..+ .++++.||+.+|.|+||+|+|+||+.++..+.-+
T Consensus        20 ~~dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d~Dg~IdF~EF~~l~~~la~~   82 (89)
T d1k8ua_          20 GREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALI   82 (89)
T ss_dssp             TSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHHHH
T ss_pred             ccCCCCCeecHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence            555554 35555555544220 012222 6779999999999999999999999999877644

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=94.89  E-value=0.0049  Score=45.74  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=40.6

Q ss_pred             HHhcCCCcEEEEc-ccccC--Cc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         271 MMHHEEAQHIVLA-GETLA--GK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       271 ~~~~~~~q~i~~s-gesga--gk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      .++..+++.++-+ ..+..  .+ .+.++.+|+.+|.|+||.++|+||+.++..++-|
T Consensus        26 ~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD~n~Dg~idF~EF~~li~~l~~~   83 (87)
T d1e8aa_          26 TLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALKA   83 (87)
T ss_dssp             EECHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHH
T ss_pred             eEcHHHHHHHHHHHccccccCCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHH
Confidence            4677777766632 11111  12 6889999999999999999999999999887654

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=94.75  E-value=0.00029  Score=59.86  Aligned_cols=84  Identities=11%  Similarity=0.068  Sum_probs=59.5

Q ss_pred             CCCCCCchhhhhccCCCCCC-CC-------hhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCC
Q psy9090         236 HLNLYGTKYHFKYKFKSRSD-NE-------PHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQG  307 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~~~~-~~-------ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g  307 (488)
                      ...+...+|+..+....... .+       ..+|+.+|.+++|.|+..+...++  ...|.. .+.+..+++.+|.++||
T Consensus        67 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l--~~~~~~-~~~~~~~f~~~D~d~dG  143 (174)
T d2scpa_          67 GKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF--GMLGLD-KTMAPASFDAIDTNNDG  143 (174)
T ss_dssp             TSCEEHHHHHHHHHHHTSCGGGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHH--HHTTCC-GGGHHHHHHHHCTTCSS
T ss_pred             CCcCcHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHCCCccccCCHHHHHHHH--HHHhhh-hHHHHHHHhhcCCCCCC
Confidence            34456667776553321111 11       128999999999999999888765  333432 45688999999999999


Q ss_pred             CchhhhHhhhcchhh
Q psy9090         308 AAKVGEKIEKCVNVI  322 (488)
Q Consensus       308 ~~~~~e~i~~~~~~l  322 (488)
                      .|+++||+..+...+
T Consensus       144 ~Is~~Ef~~~~~~f~  158 (174)
T d2scpa_         144 LLSLEEFVIAGSDFF  158 (174)
T ss_dssp             EECHHHHHHHHHHHH
T ss_pred             cEeHHHHHHHHHHHh
Confidence            999999999876543

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=94.55  E-value=0.0057  Score=45.41  Aligned_cols=59  Identities=12%  Similarity=0.005  Sum_probs=40.4

Q ss_pred             HHHHHHHH-hcCCCcEEEEccccc-CCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         265 DSAYQDMM-HHEEAQHIVLAGETL-AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       265 d~~~~~~~-~~~~~q~i~~sgesg-agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      |+++.|.+ +..+.+.++ ..|.| .-+.+.++.||+.+|.++||.|+|+||+.++..+.=|
T Consensus        21 ~~dG~~~~l~~~Elk~ll-~~e~~~~~~~~~v~~i~~~~D~n~DG~IdF~EF~~l~~~la~~   81 (87)
T d1xk4a1          21 LIKGNFHAVYRDDLKKLL-ETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVA   81 (87)
T ss_dssp             TSSSCTTCBCHHHHHHHH-HHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccCHHHHHHHH-HHhcCCccchHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence            45555533 445555444 22222 1136679999999999999999999999999876543

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.00017  Score=54.74  Aligned_cols=56  Identities=13%  Similarity=0.140  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      +|..+|.+.+|.|+..+...++  -.+|. .++.++.|++.+|.+++|.++++||+.+|
T Consensus        14 ~F~~~D~d~~G~i~~~e~~~~l--~~~~l-~~~~l~~i~~~~D~d~dG~l~~~EF~~a~   69 (92)
T d1fi6a_          14 QFKTIQPDLNGFIPGSAAKEFF--TKSKL-PILELSHIWELSDFDKDGALTLDEFCAAF   69 (92)
T ss_dssp             HHTTTCCSTTCEEEHHHHHHHH--HHHSS-CHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             HHHHhCCCcccchhHHHHHHHH--HHccC-CHHHHHHHHHHhCCCCCCeecHHHHHHHH
Confidence            6777777777777777777666  33443 36789999999999999999999999665

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.00024  Score=52.71  Aligned_cols=58  Identities=12%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccC-CchhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLA-GKTTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesga-gkte~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      .+|+.+|.+.+|.|+..+.+.++-  ..|- -..+.++.+++.++.+++|.|+|.||+.+.
T Consensus        24 ~~F~~~D~~~~G~i~~~ef~~~l~--~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          24 QEFENFDTMKTNTISREEFRAICN--RRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HHHHHHCTTCSSCBCHHHHHHHHH--HHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHCCCCCceEChhHHHHHHH--HhCCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            388888888888888888887762  2221 136789999999999999999999999864

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.00013  Score=59.74  Aligned_cols=80  Identities=8%  Similarity=-0.015  Sum_probs=55.4

Q ss_pred             CCCCCCchhhhhccCCC------CCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCC
Q psy9090         236 HLNLYGTKYHFKYKFKS------RSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGA  308 (488)
Q Consensus       236 ~~~i~~~ef~~~~~~~~------~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~  308 (488)
                      .+.+++.+|........      ..+.--++|+.+|.+.+|.|+..+.+.++.+  .|-.. .+.++.|++. +.+++|.
T Consensus        52 ~~~i~~~ef~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~--~g~~~~~~e~~~l~~~-~~d~dg~  128 (139)
T d1w7jb1          52 SRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTT--LGEKMTEEEVETVLAG-HEDSNGC  128 (139)
T ss_dssp             TCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHHHHHHH--SSSCCCHHHHHHHHTT-CCCTTSE
T ss_pred             CCceeeeccchhhHhhhhhccccHHHHHHHhhhhccCCCCCeEeHHHHHHHHHH--hCCCCCHHHHHHHHhh-CCCCCCe
Confidence            34466677765443211      1112235999999999999999999998833  33333 5667777764 7789999


Q ss_pred             chhhhHhhhc
Q psy9090         309 AKVGEKIEKC  318 (488)
Q Consensus       309 ~~~~e~i~~~  318 (488)
                      |+|.||+.+|
T Consensus       129 I~~~eF~~~l  138 (139)
T d1w7jb1         129 INYEAFLKHI  138 (139)
T ss_dssp             EEHHHHHHHT
T ss_pred             EeHHHHHHHh
Confidence            9999999876

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.18  E-value=0.00063  Score=52.24  Aligned_cols=58  Identities=10%  Similarity=0.013  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++|..+|++.+|.|+..+.+.++  ..+|- ..+.++.|++.+|.+++|.++++||+.+|.
T Consensus        15 ~~F~~~D~d~~G~i~~~e~~~~l--~~s~L-~~~~L~~i~~~~D~d~dG~L~~~EF~~am~   72 (99)
T d1qjta_          15 KYYRQVEAGNTGRVLALDAAAFL--KKSGL-PDLILGKIWDLADTDGKGVLSKQEFFVALR   72 (99)
T ss_dssp             HHHHHHCCTTSSCCCSHHHHHHH--HTSSS-CHHHHHHHHHHHCCSSSSSCCSHHHHHHHH
T ss_pred             HHHHHHCCCCCCcccHHHHHHHH--HHcCC-cHHHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence            58888899999988888887777  33443 267799999999999999999999998774

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=94.14  E-value=0.00075  Score=58.00  Aligned_cols=60  Identities=10%  Similarity=0.085  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+.+|.|+..+...++-  ..|-+ ..+.++.|++.+|.++||.|+++||+.++..
T Consensus       111 ~~F~~~D~d~~G~is~~E~~~~l~--~~g~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~~  171 (189)
T d1qv0a_         111 AVFDIFDKDGSGTITLDEWKAYGK--ISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG  171 (189)
T ss_dssp             HHHHHTC----CEECHHHHHHHHH--HHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             HHHHHHccCCCCcccchhhHHHHH--hcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            389999999999999998887763  33322 3677999999999999999999999987743

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=94.12  E-value=0.0095  Score=44.74  Aligned_cols=66  Identities=6%  Similarity=-0.037  Sum_probs=46.5

Q ss_pred             hHHHH-HHHHH-HHHhcCCCcEEEEc-ccc--c-CCchhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhh
Q psy9090         260 IYAVA-DSAYQ-DMMHHEEAQHIVLA-GET--L-AGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAI  325 (488)
Q Consensus       260 ~f~~~-d~~~~-~~~~~~~~q~i~~s-ges--g-agkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leaf  325 (488)
                      +|..+ ++++. |.|+..+.+.++-+ +.+  + .-..+.++.||+.+|.|+||.|+|+||+.+|..+..+.
T Consensus        14 ~F~~ya~~dg~~~~L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l~~~~   85 (93)
T d3c1va1          14 TFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMC   85 (93)
T ss_dssp             HHHHHHTSSSSTTEECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCCCeeCHHHHHHHHHHhchhccccCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45543 44443 35788887777733 111  1 11267799999999999999999999999998876543

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=93.60  E-value=0.00071  Score=57.98  Aligned_cols=58  Identities=9%  Similarity=0.078  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKC  318 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~  318 (488)
                      .+|+++|.+.+|.|+..+.+.++  ...|-.. .+.++.+++.+|.++||.|+++||+.+.
T Consensus       109 ~~F~~~D~d~~G~Is~~El~~~l--~~~g~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~  167 (187)
T d1uhka1         109 ALFDIVDKDQNGAITLDEWKAYT--KAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQH  167 (187)
T ss_dssp             HHHHHHCTTCSSEECHHHHHHHH--HHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHH
T ss_pred             HHHHHHccCCCcccchHHHHHHH--HHhCCCccHHHHHHHHHHhCCCCCCCEeHHHHHHHH
Confidence            48999999999999999988777  3334333 6789999999999999999999998654

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.00066  Score=53.24  Aligned_cols=58  Identities=9%  Similarity=-0.001  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      ++|..+|.+.+|+|+..+.+.++  ..+|. ..+.++.|++.+|.+++|.++++||+.+|.
T Consensus        26 ~lF~~~D~d~~G~Is~~e~~~~l--~~s~L-~~~~L~~Iw~l~D~d~dG~l~~~EF~~am~   83 (110)
T d1iq3a_          26 NQFRSLQPDPSSFISGSVAKNFF--TKSKL-SIPELSYIWELSDADCDGALTLPEFCAAFH   83 (110)
T ss_dssp             HHHHHHCCSSSSEEEHHHHHHHC--CSSSC-SSCCHHHHHHHHCSSSCSEEEHHHHHHHHH
T ss_pred             HHHHHhCCCcccchhHHHHHHHH--Hhhcc-chHHHHHHHHHhccCCCCeECHHHHHHHHH
Confidence            49999999999999988888877  33442 256799999999999999999999998764

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.44  E-value=0.00027  Score=58.35  Aligned_cols=58  Identities=14%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +|+.+|.+.+|.|+..+.+.++-  ..|.. ..+.++.|+++++.+++|.|+|+||+.++.
T Consensus        86 ~F~~~D~~~~G~I~~~el~~~l~--~~g~~l~~~ei~~l~~~~D~d~dG~I~y~eF~~~i~  144 (146)
T d1m45a_          86 AFQVFDKESTGKVSVGDLRYMLT--GLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL  144 (146)
T ss_dssp             HHHTTCSSSSSEEEHHHHHHHHH--HSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHhhccccccccchhhhhhhhc--ccCCcchHHHHHHHHHHhCCCCCCcEEHHHHHHHHH
Confidence            79999999999999999988873  23322 267799999999999999999999997764

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.0012  Score=50.20  Aligned_cols=56  Identities=7%  Similarity=0.036  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +|..+| +.+|.|+..+...++  ..+|- ..+.++.|++.+|.+++|.++++||+..|.
T Consensus        15 ~F~~~D-~~~G~i~~~el~~~l--~~~gl-~~~~L~~Iw~~~D~~~dG~l~~~EF~~a~~   70 (95)
T d2jxca1          15 IFDSLS-PVNGFLSGDKVKPVL--LNSKL-PVDILGRVWELSDIDHDGMLDRDEFAVAMF   70 (95)
T ss_dssp             HHHHTC-CBTTEEEHHHHHHHH--TTSSC-CHHHHHHHHHHHCTTCSSEEEHHHHHHHHH
T ss_pred             HHHHhC-CCCCceeHHHHHHHH--HHcCC-CHHHHHHHHHHhcCCCCCeEcHHHHHHHHH
Confidence            777777 677877777777666  33442 256799999999999999999999987653

>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]

Probab=92.90  E-value=0.011  Score=45.02  Aligned_cols=65  Identities=9%  Similarity=0.020  Sum_probs=46.1

Q ss_pred             hHHHHHH--HHHHHHhcCCCcEEEEc-ccc-c---CCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhh
Q psy9090         260 IYAVADS--AYQDMMHHEEAQHIVLA-GET-L---AGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHA  324 (488)
Q Consensus       260 ~f~~~d~--~~~~~~~~~~~q~i~~s-ges-g---agk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~lea  324 (488)
                      +|.+|++  +..|.|+..|++.++-+ +.. .   -.+ .+.++.||+.+|.|+||.|+|+||+.++..+.-+
T Consensus        12 l~~~F~~y~~~dG~i~~~El~~ll~~~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l~~~   84 (100)
T d1psra_          12 MIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIATD   84 (100)
T ss_dssp             HHHHHHHTCCTTSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcccHHHHHHHHHHHccccccccccCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHH
Confidence            5666665  55677777777776633 110 0   011 3468999999999999999999999998876544

>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]

Probab=92.41  E-value=0.029  Score=42.03  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         290 KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       290 kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      ..+.++.||+.+|.|+||.++|+||+.++..+.
T Consensus        50 d~~~vd~im~~LD~n~Dg~vdF~EF~~li~~la   82 (95)
T d1qlsa_          50 DPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLA   82 (95)
T ss_dssp             CTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence            478899999999999999999999998877654

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.0058  Score=51.29  Aligned_cols=62  Identities=13%  Similarity=0.057  Sum_probs=47.0

Q ss_pred             hHHHHHH--HHHHHHhcCCCcEEEEc-ccccCCc---hhhHHHHHHHHHHhcCCCchhhhHhhhcchh
Q psy9090         260 IYAVADS--AYQDMMHHEEAQHIVLA-GETLAGK---TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNV  321 (488)
Q Consensus       260 ~f~~~d~--~~~~~~~~~~~q~i~~s-gesgagk---te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~  321 (488)
                      +|.+|++  +..|.|+..|+|.++-. |......   .+.++.||+.+|.+++|.++++||+..+..+
T Consensus         2 ~~~~F~~~a~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D~~~~G~i~~~EF~~l~~~~   69 (165)
T d1k94a_           2 VYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL   69 (165)
T ss_dssp             HHHHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred             hHHHHHHhcCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHhhcc
Confidence            4667775  55778999999988732 3322221   4789999999999999999999999877654

>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Cow (Bos taurus), s100b [TaxId: 9913]

Probab=91.84  E-value=0.037  Score=40.97  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=28.8

Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .+.++.+|+.+|.|+||+++|+||+..+..+.
T Consensus        51 ~~~~d~~m~~LD~n~Dg~vdF~EF~~li~~la   82 (90)
T d3cr5x1          51 QEVVDKVMETLDSDGDGECDFQEFMAFVAMIT   82 (90)
T ss_dssp             HHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence            67899999999999999999999998876654

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.00  E-value=0.03  Score=51.69  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=26.3

Q ss_pred             CCCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          23 NHVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        23 ~givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      .|+||+|+.++||+++.+...-++||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            479999999999999988777899998763

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.00055  Score=58.24  Aligned_cols=90  Identities=9%  Similarity=0.097  Sum_probs=67.1

Q ss_pred             cCCceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHH
Q psy9090         224 VGDVLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLI  302 (488)
Q Consensus       224 v~~il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~  302 (488)
                      +..++...|.++++.|.+.||...+....   .-..+|+.+|.+.+|.|+..+.+.++-  ..|.. ..+.++.+++.. 
T Consensus        49 v~~l~~~~D~d~~G~I~f~EF~~~~~~~~---~~~~~f~~~D~d~sG~i~~~El~~~l~--~~g~~ls~~~~~~l~~~~-  122 (172)
T d1juoa_          49 CRLMVSMLDRDMSGTMGFNEFKELWAVLN---GWRQHFISFDTDRSGTVDPQELQKALT--TMGFRLSPQAVNSIAKRY-  122 (172)
T ss_dssp             HHHHHHHHCTTCSSCEEHHHHHHHHHHHH---HHHHHHHTTCTTCCSEECHHHHHHHHH--HTTCCCCHHHHHHHHHHT-
T ss_pred             HHHHHHHHCCCCCCceehHHHHHHHHhhh---hhhHHHHHhCcCCCCcCCHHHHHHHHH--HHHHhhhHHHHHHHHHHH-
Confidence            45566778899999999999997664321   123489999999999999888887762  22222 366788888887 


Q ss_pred             HhcCCCchhhhHhhhcch
Q psy9090         303 FLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       303 ~~~~g~~~~~e~i~~~~~  320 (488)
                       +.+|.+++++|+.+|..
T Consensus       123 -d~~g~i~~~eF~~~~~~  139 (172)
T d1juoa_         123 -STNGKITFDDYIACCVK  139 (172)
T ss_dssp             -CSSSSEEHHHHHHHHHH
T ss_pred             -HhcCCcCHHHHHHHHHH
Confidence             46788999999988865

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.80  E-value=0.0022  Score=53.82  Aligned_cols=59  Identities=10%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+..|.|+..+.+.++  ...|. -.+.++.+++.+|.+++|.++++||+..+..
T Consensus       106 ~~F~~~D~d~dG~Is~~E~~~~~--~~~~~-~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~  164 (176)
T d1nyaa_         106 GIVGMCDKNADGQINADEFAAWL--TALGM-SKAEAAEAFNQVDTNGNGELSLDELLTAVRD  164 (176)
T ss_dssp             HHHHHTCSSCCSEEEHHHHHHHH--HHTTC-CHHHHHHHHHHHCTTCSSEEEHHHHHHHHSC
T ss_pred             HHHHHHccCCChhhhHHHHHHHH--HhcCC-cHHHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence            38888888888888888887655  22232 2577899999999999999999999987654

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=90.70  E-value=0.0031  Score=50.40  Aligned_cols=60  Identities=17%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcc
Q psy9090         258 PHIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCV  319 (488)
Q Consensus       258 ph~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~  319 (488)
                      +.+|..+|.+++|.|+..+.+.++-  .-|.. ..+.++.+++.++.+++|.++++||+..+.
T Consensus         3 e~~F~~~D~d~dG~is~~E~~~~l~--~~~~~~~~~~~~~~~~~~D~~~~g~i~~~Ef~~~~~   63 (134)
T d1jfja_           3 EALFKEIDVNGDGAVSYEEVKAFVS--KKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG   63 (134)
T ss_dssp             HHHHHHHCTTCSSEEEHHHHHHHHH--TTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTT
T ss_pred             HHHHHHHcCCCcCCCcHHHHHHHHH--HcCCCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence            4588899999999888888877662  22222 256788899999999999999999997653

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.57  E-value=0.0058  Score=52.03  Aligned_cols=61  Identities=8%  Similarity=0.093  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|..+|.+++|.|+..+.+.++-+.-.-.-..+.++.+++.++.+++|.++++||+..+..
T Consensus        24 iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EFl~~~~~   84 (181)
T d1hqva_          24 VFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY   84 (181)
T ss_dssp             HHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCSSSSSBCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccccccchhhhHHHhhhhh
Confidence            9999999999999999998877442110123578899999999999999999999987754

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=89.82  E-value=0.004  Score=57.73  Aligned_cols=88  Identities=11%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             ceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccC--CchhhHHHHHHHHHHh
Q psy9090         227 VLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLA--GKTTSLKHLLKHLIFL  304 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesga--gkte~~k~i~~~~~~~  304 (488)
                      ++...+.+..+.+.+.+|...+....   ....+|+.+|.+.+|.|+..+.+.++  ...|.  -..+.+..|++.+|.+
T Consensus       228 ~~~~~~~~~~~~i~~~ef~~~~~~~~---~~~~~F~~~D~d~~G~Is~~E~~~~l--~~~~~~~~~~~~~~~l~~~~D~d  302 (321)
T d1ij5a_         228 LFRYADEDESDDVGFSEYVHLGLCLL---VLRILYAFADFDKSGQLSKEEVQKVL--EDAHIPESARKKFEHQFSVVDVD  302 (321)
T ss_dssp             HHHHHCTTCSSCEEHHHHHHHHHHHH---HHHHHHHHTCSSSCSSEEHHHHHHHH--HHTTCCGGGCSTHHHHHHHHTTT
T ss_pred             HHHhhhcccccccccccccchhhhhh---HHHHHHHHHhcCCCCCCcHHHHHHHH--HHcCCCcCcHHHHHHHHHHhCCC
Confidence            34455566666666777765443221   12348889999999999998888887  23332  1256789999999999


Q ss_pred             cCCCchhhhHhhhcc
Q psy9090         305 GQGAAKVGEKIEKCV  319 (488)
Q Consensus       305 ~~g~~~~~e~i~~~~  319 (488)
                      +||.|+|+||+.+|.
T Consensus       303 ~dG~Is~~EF~~~ml  317 (321)
T d1ij5a_         303 DSKSLSYQEFVMLVL  317 (321)
T ss_dssp             TCSEECHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHH
Confidence            999999999999874

>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]

Probab=89.79  E-value=0.064  Score=38.91  Aligned_cols=30  Identities=13%  Similarity=0.104  Sum_probs=26.5

Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      ...+..+|+.+|.|+||+++|+||+..+..
T Consensus        53 ~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~   82 (83)
T d1xk4c1          53 EKVIEHIMEDLDTNADKQLSFEEFIMLMAR   82 (83)
T ss_dssp             HHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCcHHHHHHHHhh
Confidence            456899999999999999999999987643

>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100p [TaxId: 9606]

Probab=89.60  E-value=0.051  Score=40.51  Aligned_cols=32  Identities=22%  Similarity=0.220  Sum_probs=28.4

Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      .++++.+|+.+|.++||+++|+||+..+..+.
T Consensus        51 ~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~la   82 (94)
T d1j55a_          51 KDAVDKLLKDLDANGDAQVDFSEFIVFVAAIT   82 (94)
T ss_dssp             -CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence            67799999999999999999999999887654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.1  Score=43.02  Aligned_cols=28  Identities=32%  Similarity=0.399  Sum_probs=24.7

Q ss_pred             cEEEEcccccCCchhhHHHHHHHHHHhc
Q psy9090         278 QHIVLAGETLAGKTTSLKHLLKHLIFLG  305 (488)
Q Consensus       278 q~i~~sgesgagkte~~k~i~~~~~~~~  305 (488)
                      ++|+|+|+.|+|||.-++.+++.+...+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            5689999999999999999999887654

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.017  Score=48.45  Aligned_cols=64  Identities=11%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             ChhhHHHHHH--HHHHHHhcCCCcEEEEcccccC---C---chhhHHHHHHHHHHhcCCCchhhhHhhhcchhh
Q psy9090         257 EPHIYAVADS--AYQDMMHHEEAQHIVLAGETLA---G---KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVI  322 (488)
Q Consensus       257 ~ph~f~~~d~--~~~~~~~~~~~q~i~~sgesga---g---kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~l  322 (488)
                      ++.++..|++  +.+|.|+..|+|.++-  +.|.   +   ..+.++.+++.++.+++|.|+++||+.++....
T Consensus         6 ~~~~~~~F~~~~~~dG~Is~~EL~~~L~--~~g~~~~~~~~~~~~v~~l~~~~D~d~~G~I~f~EF~~~~~~~~   77 (172)
T d1juoa_           6 QDPLYGYFAAVAGQDGQIDADELQRCLT--QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLN   77 (172)
T ss_dssp             CCTTHHHHHHHHTTTTEECHHHHHHHHH--HHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHH--HcCCCCCcccCCHHHHHHHHHHHCCCCCCceehHHHHHHHHhhh
Confidence            3444444443  4568999999998873  3331   1   147899999999999999999999998876543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.04  E-value=0.097  Score=46.32  Aligned_cols=29  Identities=28%  Similarity=0.392  Sum_probs=24.7

Q ss_pred             CCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          24 HVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        24 givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      .++|+|+.|.||+++.++.+-|+||+.+.
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhcc
Confidence            38999999999999876666799998764

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.03  E-value=0.057  Score=43.54  Aligned_cols=92  Identities=11%  Similarity=-0.053  Sum_probs=65.3

Q ss_pred             ceeeeCCCCCCCCCCchhhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcC
Q psy9090         227 VLLFINPNTHLNLYGTKYHFKYKFKSRSDNEPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQ  306 (488)
Q Consensus       227 il~~Inp~~~~~i~~~ef~~~~~~~~~~~~~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~  306 (488)
                      ++...|+++++.|...++..++.........+......+.+.+|.++..+-..++..--......+.++.+.+.+|.+++
T Consensus        12 ~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~aF~~fD~~~~   91 (145)
T d2mysb_          12 AFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGK   91 (145)
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHhCCCcchHHHHHHHHHhccCceeechhhhhhhhcccccchHHHHHHHHHhhhhccc
Confidence            36667889999999999988775443333345567777777777777666655553222222235678899999999999


Q ss_pred             CCchhhhHhhhc
Q psy9090         307 GAAKVGEKIEKC  318 (488)
Q Consensus       307 g~~~~~e~i~~~  318 (488)
                      |.|+.+++...+
T Consensus        92 g~I~~~el~~~l  103 (145)
T d2mysb_          92 GSIKKSFLEELL  103 (145)
T ss_pred             chhhHHHHHHHH
Confidence            999999988754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.71  E-value=0.27  Score=42.55  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             HHHHhcCCCcEEEEcccccCCchhhHHHHHHHHH
Q psy9090         269 QDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       269 ~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      ..++.......++++|++|.|||..++.+.+++-
T Consensus        37 ~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          37 KHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            3345666778899999999999999999999874

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=86.30  E-value=0.11  Score=45.66  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=24.8

Q ss_pred             CCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          24 HVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        24 givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      .++|+|+.|.||+++.++.+-|+||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            38999999999999976667899998764

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.39  E-value=0.0079  Score=51.54  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             CCCCCchhhhhccCCCCCCC----ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhh
Q psy9090         237 LNLYGTKYHFKYKFKSRSDN----EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG  312 (488)
Q Consensus       237 ~~i~~~ef~~~~~~~~~~~~----~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~  312 (488)
                      +.+...+|...+........    ..++|..+|.+.+|.|+..+..+.+ +.-+..-..+.++.+.+.+|.+++|.++.+
T Consensus        41 G~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~D~~~~G~I~~~Ef~~~~-~~~~~~~~~e~~~~~F~~~D~d~dG~is~~  119 (190)
T d1fpwa_          41 GQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVL-STTSRGTLEEKLSWAFELYDLNHDGYITFD  119 (190)
T ss_dssp             CCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHH-HHHSCCCSTHHHHHHHHHHCSSCSSEEEHH
T ss_pred             CCccHHHHHHHHHHHCCCCChHHHHHHHHHHhCcCCCCcccHHHHHHHH-HHHccCchHHHHHHHHHHhccCCCCcCcHH
Confidence            44566777766543221111    2358999999988887777765433 111112247889999999999999999999


Q ss_pred             hHhhhcchhhhhhhccccC
Q psy9090         313 EKIEKCVNVIHAIGNAGTP  331 (488)
Q Consensus       313 e~i~~~~~~leafgna~t~  331 (488)
                      |+...+..+....+...+.
T Consensus       120 E~~~~~~~~~~~~~~~~~~  138 (190)
T d1fpwa_         120 EMLTIVASVYKMMGSMVTL  138 (190)
T ss_dssp             HHHHHHHHHHTTSCSTTSS
T ss_pred             HHHHHHHHHHHhcccccCC
Confidence            9999888887766655443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=0.26  Score=39.92  Aligned_cols=27  Identities=37%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             EEEEcccccCCchhhHHHHHHHHHHhc
Q psy9090         279 HIVLAGETLAGKTTSLKHLLKHLIFLG  305 (488)
Q Consensus       279 ~i~~sgesgagkte~~k~i~~~~~~~~  305 (488)
                      .|.|+|.+|||||--++.+++++...|
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            467889999999999999999988654

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.64  E-value=0.02  Score=48.46  Aligned_cols=92  Identities=10%  Similarity=0.097  Sum_probs=61.4

Q ss_pred             CCCCCCCchhhhhccCCCCCCC--ChhhHHHHHHHHHHHHhcCCCcEEEEcccccCCchhhHHHHHHHHHHhcCCCchhh
Q psy9090         235 THLNLYGTKYHFKYKFKSRSDN--EPHIYAVADSAYQDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLIFLGQGAAKVG  312 (488)
Q Consensus       235 ~~~~i~~~ef~~~~~~~~~~~~--~ph~f~~~d~~~~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~~~~~g~~~~~  312 (488)
                      +++.+...+|...+........  ..++|..+|.+.+|.|+..+--..+-.-...+...+.++.+.+.+|.+++|.|+.+
T Consensus        32 ~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~dg~I~f~EFl~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~  111 (183)
T d2zfda1          32 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQ  111 (183)
T ss_dssp             CSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHHCTTSSSSEEHH
T ss_pred             CCCcCcHHHHHHHHHhcCCCCCHHHHHHHHHHccCCCCcCcHHHHHHHHHhhhccCcHHHHHHHhhcccccCCCCCccHH
Confidence            4567778888665533322221  24589999988877766555432221111122246779999999999999999999


Q ss_pred             hHhhhcchhhhhhh
Q psy9090         313 EKIEKCVNVIHAIG  326 (488)
Q Consensus       313 e~i~~~~~~leafg  326 (488)
                      |+...+..++...|
T Consensus       112 e~~~~~~~~~~~~~  125 (183)
T d2zfda1         112 EVKQMVVATLAESG  125 (183)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhh
Confidence            99998888776544

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.15  E-value=0.018  Score=49.11  Aligned_cols=59  Identities=8%  Similarity=0.005  Sum_probs=33.6

Q ss_pred             hHHHHHHHH-HHHHhcCCCcEEEEcccccCCc-hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         260 IYAVADSAY-QDMMHHEEAQHIVLAGETLAGK-TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       260 ~f~~~d~~~-~~~~~~~~~q~i~~sgesgagk-te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      +|+-|.++. +|.|+..+.+.++  +..|... ...++.|++.+|.+++|.|++.||+..+..
T Consensus        26 ~~~~F~~~~~~G~i~~~Ef~~~l--~~~~~~~~~~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~   86 (189)
T d1jbaa_          26 WYKKFLEECPSGTLFMHEFKRFF--KVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNL   86 (189)
T ss_dssp             HHHHHHSSSTTCCEEHHHHHHHH--HCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHH
T ss_pred             HHHHhcccCCCCeeeHHHHHHHH--HHcCCCccHHHHHHHHHHhccCCCCeEeehhHHHHHHh
Confidence            445544432 4555555555554  3333333 445667777777777777777777766543

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=84.06  E-value=0.27  Score=45.15  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             CCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          24 HVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        24 givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      ++||+|+.|.|||++. + ..++||+-+.
T Consensus       193 ~liHgDlh~~NvL~~~-~-~~~IDFdd~~  219 (325)
T d1zyla1         193 LRLHGDCHAGNILWRD-G-PMFVDLDDAR  219 (325)
T ss_dssp             EECCSSCSGGGEEESS-S-EEECCCTTCC
T ss_pred             eeecCCCCcccEEEeC-C-ceEEechhcc
Confidence            6899999999999974 3 4589998764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.09  E-value=0.25  Score=40.58  Aligned_cols=27  Identities=33%  Similarity=0.449  Sum_probs=23.0

Q ss_pred             EEEEcccccCCchhhHHHHHHHHHHhc
Q psy9090         279 HIVLAGETLAGKTTSLKHLLKHLIFLG  305 (488)
Q Consensus       279 ~i~~sgesgagkte~~k~i~~~~~~~~  305 (488)
                      .|+|.|++|+|||.-++.|+..+....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~   28 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCc
Confidence            378899999999999999998887553

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.08  E-value=0.42  Score=41.19  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=28.2

Q ss_pred             HHHHhcCCCcEEEEcccccCCchhhHHHHHHHHH
Q psy9090         269 QDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       269 ~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      ..++.......++++|++|.|||..++.+.+++.
T Consensus        25 ~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          25 KKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             HHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHc
Confidence            3455566667799999999999999999999875

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=82.88  E-value=0.011  Score=47.82  Aligned_cols=67  Identities=10%  Similarity=0.145  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcchhhhhhhcc
Q psy9090         260 IYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVNVIHAIGNA  328 (488)
Q Consensus       260 ~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~~leafgna  328 (488)
                      +|..+|.+.+|.|+..+.+.++  ..-|.. ....++.+++.++.+++|.+++++|+..+...+....++
T Consensus        14 ~F~~~D~~~~G~Is~~e~~~~l--~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~   81 (146)
T d1exra_          14 AFALFDKDGDGTITTKELGTVM--RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSE   81 (146)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHH--HHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCeECHHHHHHHH--HhcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhccChH
Confidence            6777777777777777776655  333322 256678899999999999999999998876655444433

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.87  E-value=0.28  Score=41.09  Aligned_cols=24  Identities=38%  Similarity=0.513  Sum_probs=20.2

Q ss_pred             EEEEcccccCCchhhHHHHHHHHH
Q psy9090         279 HIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       279 ~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      -|+++|.||+||+.-.+.+++...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            388999999999988888887654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.12  E-value=0.33  Score=40.83  Aligned_cols=23  Identities=43%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             EEEcccccCCchhhHHHHHHHHH
Q psy9090         280 IVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       280 i~~sgesgagkte~~k~i~~~~~  302 (488)
                      |+|+|.||+||+.-++.+++...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78899999999988888888765

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=81.69  E-value=0.035  Score=46.91  Aligned_cols=60  Identities=10%  Similarity=-0.011  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHhcCCCcEEEEcccccCC-chhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         259 HIYAVADSAYQDMMHHEEAQHIVLAGETLAG-KTTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       259 h~f~~~d~~~~~~~~~~~~q~i~~sgesgag-kte~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .+|..+|.+++|.|+..+.+.++-+  .|.. ..+.++.+++.++.+++|.+++++|+..+..
T Consensus        22 ~~F~~~D~d~dG~Is~~El~~~l~~--l~~~~s~~~~~~l~~~~d~d~~~~i~~~ef~~~~~~   82 (182)
T d1y1xa_          22 EWFRAVDTDGSGAISVPELNAALSS--AGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF   82 (182)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHCB--TTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCCCCHHHHHHHHHH--hcccCchhhhhhhhcccccccccccccccccccccc
Confidence            3999999999999999988876632  2221 2677899999999999999999999876654

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=81.56  E-value=0.27  Score=46.64  Aligned_cols=28  Identities=21%  Similarity=0.425  Sum_probs=24.2

Q ss_pred             CCeecccCCCCEEEccCCcEEEEecCCcc
Q psy9090          24 HVIHRDLRGSNVLLTKDGEVKIVDFGLSR   52 (488)
Q Consensus        24 givHrDlkp~NILl~~~~~vkL~Dfg~a~   52 (488)
                      .++|+|+.|.|||++.++ ++++||..+.
T Consensus       224 ~LiHGDl~~gNIlv~~~~-~~vID~E~a~  251 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE-TKVIDPEFAF  251 (392)
T ss_dssp             EEECSCCCGGGEEECSSC-EEECCCTTCE
T ss_pred             ceeccCCcCCceeEcCCc-eEEechhhcc
Confidence            599999999999998754 8999997764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=81.25  E-value=0.44  Score=38.99  Aligned_cols=29  Identities=28%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             CcEEEEcccccCCchhhHHHHHHHHHHhc
Q psy9090         277 AQHIVLAGETLAGKTTSLKHLLKHLIFLG  305 (488)
Q Consensus       277 ~q~i~~sgesgagkte~~k~i~~~~~~~~  305 (488)
                      |+-|+|+|-+|+|||..++.+-+.+...+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999988886544

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=80.89  E-value=0.022  Score=48.66  Aligned_cols=30  Identities=13%  Similarity=-0.035  Sum_probs=24.7

Q ss_pred             hhhHHHHHHHHHHhcCCCchhhhHhhhcch
Q psy9090         291 TTSLKHLLKHLIFLGQGAAKVGEKIEKCVN  320 (488)
Q Consensus       291 te~~k~i~~~~~~~~~g~~~~~e~i~~~~~  320 (488)
                      .|.++.||+.+|.+++|.++++||+.++..
T Consensus        62 ~e~~~~li~~~D~d~~G~i~~~EF~~l~~~   91 (188)
T d1qxpa2          62 LESCRSMVNLMDRDGNGKLGLVEFNILWNR   91 (188)
T ss_dssp             HHHHHHHHHHHCC--CCCCCSSSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Confidence            578999999999999999999999987654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.75  E-value=0.37  Score=39.99  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=20.1

Q ss_pred             cEEEEcccccCCchhhHHHHHHHHH
Q psy9090         278 QHIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       278 q~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      +-|+++|.||+||+.-++.+++...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578899999999888888877643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=80.56  E-value=0.6  Score=37.82  Aligned_cols=29  Identities=24%  Similarity=0.204  Sum_probs=24.1

Q ss_pred             CCCcEEEEcccccCCchhhHHHHHHHHHH
Q psy9090         275 EEAQHIVLAGETLAGKTTSLKHLLKHLIF  303 (488)
Q Consensus       275 ~~~q~i~~sgesgagkte~~k~i~~~~~~  303 (488)
                      .+...|+++|-||+|||.-++.+-+.+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35567888999999999999998888754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=80.55  E-value=0.39  Score=38.98  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             CCcEEEEcccccCCchhhHHHHHHHH
Q psy9090         276 EAQHIVLAGETLAGKTTSLKHLLKHL  301 (488)
Q Consensus       276 ~~q~i~~sgesgagkte~~k~i~~~~  301 (488)
                      ..+-|+++|-||+|||..++.+-+.+
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35678899999999998888887765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.23  E-value=0.68  Score=39.63  Aligned_cols=34  Identities=18%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             HHHHhcCCCcEEEEcccccCCchhhHHHHHHHHH
Q psy9090         269 QDMMHHEEAQHIVLAGETLAGKTTSLKHLLKHLI  302 (488)
Q Consensus       269 ~~~~~~~~~q~i~~sgesgagkte~~k~i~~~~~  302 (488)
                      +.++.......++++|..|.|||..++.+.+++.
T Consensus        27 ~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          27 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            3345666777899999999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.06  E-value=0.47  Score=37.62  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             cEEEEcccccCCchhhHHHHHHH
Q psy9090         278 QHIVLAGETLAGKTTSLKHLLKH  300 (488)
Q Consensus       278 q~i~~sgesgagkte~~k~i~~~  300 (488)
                      +-|++.|-+|||||.-++.+++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            45778999999999888887654