Diaphorina citri psyllid: psy9260

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MIHNKTQQSVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV
cccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccEEEEcccccccCEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHccccccccccccccccccEEEEEEEHHHHccccccccccHHHHHHHHHHcc
************SQIYLFVHLLKSRLKQ**********************LNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSV*
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MIHNKTQQSVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-mRNA-processing-splicing factor 8 Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.confidentQ6P2Q9
Pre-mRNA-splicing factor 8 homolog Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.confidentP34369
Pre-mRNA-processing-splicing factor 8 Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.confidentQ99PV0

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0000375 [BP]RNA splicing, via transesterification reactionsconfidentGO:0016070, GO:0006139, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0034641, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0010467, GO:0006807, GO:0008150, GO:1901360, GO:0008152, GO:0008380, GO:0006396, GO:0046483
GO:0071011 [CC]precatalytic spliceosomeconfidentGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071013 [CC]catalytic step 2 spliceosomeconfidentGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0016539 [BP]intein-mediated protein splicingconfidentGO:0044238, GO:0051604, GO:0019538, GO:0043170, GO:0071704, GO:0010467, GO:0008150, GO:0008152, GO:0016485, GO:0030908
GO:0009506 [CC]plasmodesmaconfidentGO:0055044, GO:0005575, GO:0030054, GO:0005911
GO:0006397 [BP]mRNA processingconfidentGO:0016070, GO:0016071, GO:0044238, GO:0044260, GO:0006139, GO:0009987, GO:0006725, GO:0034641, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0010467, GO:0006807, GO:0008150, GO:1901360, GO:0008152, GO:0006396, GO:0046483
GO:0005682 [CC]U5 snRNPconfidentGO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0008406 [BP]gonad developmentprobableGO:0032502, GO:0007548, GO:0032501, GO:0048608, GO:0000003, GO:0044707, GO:0022414, GO:0061458, GO:0048856, GO:0045137, GO:0044767, GO:0003006, GO:0048513, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0030623 [MF]U5 snRNA bindingprobableGO:0097159, GO:0017069, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0040035 [BP]hermaphrodite genitalia developmentprobableGO:0032502, GO:0007548, GO:0032501, GO:0048608, GO:0000003, GO:0044707, GO:0022414, GO:0061458, GO:0048856, GO:0044767, GO:0003006, GO:0048513, GO:0048806, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0018996 [BP]molting cycle, collagen and cuticulin-based cuticleprobableGO:0008150, GO:0032501, GO:0042303, GO:0044699, GO:0044707
GO:0046540 [CC]U4/U6 x U5 tri-snRNP complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0016477 [BP]cell migrationprobableGO:0040011, GO:0048870, GO:0009987, GO:0006928, GO:0051674, GO:0044763, GO:0008150, GO:0051179, GO:0044699
GO:0006898 [BP]receptor-mediated endocytosisprobableGO:0006897, GO:0016192, GO:0006810, GO:0008150, GO:0051234, GO:0051179
GO:0009792 [BP]embryo development ending in birth or egg hatchingprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0008150, GO:0007275, GO:0044699
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0040007 [BP]growthprobableGO:0008150
GO:0002119 [BP]nematode larval developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0009791, GO:0002164, GO:0008150, GO:0007275, GO:0044699
GO:0022008 [BP]neurogenesisprobableGO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0000244 [BP]assembly of spliceosomal tri-snRNPprobableGO:0022607, GO:0043933, GO:0090304, GO:0034641, GO:0006807, GO:0044237, GO:0034622, GO:0071840, GO:0006139, GO:0000387, GO:0044260, GO:0016043, GO:0065003, GO:0071704, GO:0010467, GO:0022618, GO:1901360, GO:0022613, GO:0008380, GO:0044238, GO:0009987, GO:0006725, GO:0071826, GO:0000375, GO:0000377, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0016071, GO:0000398, GO:0043170, GO:0044085, GO:0006396, GO:0006397
GO:0042138 [BP]meiotic DNA double-strand break formationprobableGO:0048610, GO:0090304, GO:0090305, GO:0034641, GO:0006807, GO:0022402, GO:1901360, GO:0006139, GO:0007126, GO:0007127, GO:0051321, GO:0000003, GO:0071704, GO:0044699, GO:0009987, GO:0006725, GO:0008150, GO:0008152, GO:0046483, GO:0044238, GO:0007049, GO:0044237, GO:0043170, GO:0044763
GO:0045132 [BP]meiotic chromosome segregationprobableGO:0007126, GO:0048610, GO:0051321, GO:0000003, GO:0022402, GO:0009987, GO:0008150, GO:0044763, GO:0044699, GO:0007059, GO:0007049
GO:0044351 [BP]macropinocytosisprobableGO:0006897, GO:0016192, GO:0006907, GO:0006810, GO:0044765, GO:0008150, GO:0051234, GO:0051179, GO:0044699
GO:0007062 [BP]sister chromatid cohesionprobableGO:0006996, GO:0051276, GO:0022402, GO:0009987, GO:0016043, GO:0008150, GO:0044763, GO:0044699, GO:0071840, GO:0007059, GO:0007049
GO:0016607 [CC]nuclear speckprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0000386 [MF]second spliceosomal transesterification activityprobableGO:0003824, GO:0003674
GO:0000389 [BP]mRNA 3'-splice site recognitionprobableGO:0022607, GO:0000245, GO:0043933, GO:0090304, GO:0034641, GO:0006807, GO:0044237, GO:0034622, GO:0071840, GO:0006139, GO:0071826, GO:0044260, GO:0016043, GO:0065003, GO:0071704, GO:0010467, GO:0022618, GO:1901360, GO:0022613, GO:0008380, GO:0044238, GO:0009987, GO:0006725, GO:0000375, GO:0000377, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0016071, GO:0000398, GO:0043170, GO:0044085, GO:0006376, GO:0006396, GO:0006397
GO:0004843 [MF]ubiquitin-specific protease activityprobableGO:0016787, GO:0019783, GO:0003824, GO:0070011, GO:0003674, GO:0008233, GO:0008234
GO:0043247 [BP]telomere maintenance in response to DNA damageprobableGO:0060249, GO:0042592, GO:0034641, GO:0006807, GO:0044699, GO:0000723, GO:0006139, GO:0051716, GO:0044260, GO:0071840, GO:0016043, GO:0071704, GO:0065007, GO:1901360, GO:0065008, GO:0044238, GO:0009987, GO:0006725, GO:0006974, GO:0006950, GO:0044763, GO:0008152, GO:0046483, GO:0006996, GO:0090304, GO:0051276, GO:0050896, GO:0032200, GO:0044237, GO:0043170, GO:0033554, GO:0006259, GO:0008150
GO:0007129 [BP]synapsisprobableGO:0006996, GO:0007126, GO:0007127, GO:0051321, GO:0070192, GO:0071840, GO:0009987, GO:0016043, GO:0008150, GO:0048610, GO:0022402, GO:0044699, GO:0044763, GO:0000003, GO:0007049, GO:0051276
GO:0032504 [BP]multicellular organism reproductionprobableGO:0032501, GO:0008150, GO:0000003
GO:0000350 [BP]generation of catalytic spliceosome for second transesterification stepprobableGO:0022607, GO:0043933, GO:0090304, GO:0034641, GO:0006807, GO:0044237, GO:0034622, GO:0071840, GO:0006139, GO:0071826, GO:0044260, GO:0016043, GO:0065003, GO:0071704, GO:0010467, GO:0022618, GO:1901360, GO:0022613, GO:0008380, GO:0044238, GO:0009987, GO:0006725, GO:0000375, GO:0000377, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0016071, GO:0000393, GO:0000398, GO:0043170, GO:0044085, GO:0006396, GO:0006397
GO:0007131 [BP]reciprocal meiotic recombinationprobableGO:0048610, GO:0090304, GO:0034641, GO:0006807, GO:0022402, GO:0044699, GO:0006139, GO:0007126, GO:0007127, GO:0051321, GO:0000003, GO:0044260, GO:0071704, GO:1901360, GO:0009987, GO:0006725, GO:0008150, GO:0008152, GO:0035825, GO:0046483, GO:0006310, GO:0044238, GO:0007049, GO:0044237, GO:0043170, GO:0006259, GO:0044763
GO:0010332 [BP]response to gamma radiationprobableGO:0008150, GO:0009314, GO:0050896, GO:0010212, GO:0009628
GO:0032204 [BP]regulation of telomere maintenanceprobableGO:0033044, GO:0051052, GO:0019222, GO:0033043, GO:0060255, GO:0031323, GO:0032844, GO:0019219, GO:0065007, GO:0051171, GO:0008150, GO:0051128, GO:0050789, GO:0050794, GO:0080090

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3ZEF, chain B
Confidence level:very confident
Coverage over the Query: 47-196
View the alignment between query and template
View the model in PyMOL