Psyllid ID: psy9260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MIHNKTQQSVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHccccccccccccccccccEEEEEEEHHHHccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccEEEEEEcccEccccEEEEEEEEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHcccccccccccccEEEEEEHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mihnktqqsVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRsglnqipnrrftlwwsptinranvyVGFQVQLDltgifmhgkiptlKISLIQIFRAHLWQKVHESIVMDLCQhsinfsplmfisrdtmdsttTQKYWLDVQlrwgdydshdIERYARAKFldyttdnmsiypsptGVLIAIDLAYNLhryidypvsaMMNCVGVLKSVV
Flexible Loop (DISEMBL)
mihnktqqsveesQIYLFVHLLKSRLKQEKASGFEESMKYKKLTnaqrsglnqipnRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV
Low Complexity Region (SEG)
MIHNKTQQSVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV
Disordered region (IsUnstruct)
*************QIYLFVHLLKS**************************LNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVL****
Disordered Region (DISOPRED)
************SQIYLFVHLLKSRLKQ***********************NQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSI**********DTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSV*
Disordered Region (DISEMBL)
**********EESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV
Disordered Region (DISPRO)
*******QSVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIHNKTQQSVEESQIYLFVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q6P2Q9	2335	Pre-mRNA-processing-splic	yes	N/A	0.774	0.071	0.736	1e-82
Q99PV0	2335	Pre-mRNA-processing-splic	yes	N/A	0.774	0.071	0.736	1e-82
P34369	2329	Pre-mRNA-splicing factor	yes	N/A	0.774	0.072	0.727	6e-82
Q8T295	2327	Pre-mRNA-processing-splic	yes	N/A	0.769	0.071	0.679	3e-75
O14187	2363	Pre-mRNA-splicing factor	yes	N/A	0.838	0.077	0.621	1e-74
P33334	2413	Pre-mRNA-splicing factor	yes	N/A	0.774	0.069	0.617	5e-69

>sp|Q6P2Q9|PRP8_HUMAN Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2

 Score =  305 bits (782), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 162/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ                        + +N
Sbjct: 1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1623

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  S+D MDSTTTQKYW+D+QLRWGDYDSHDIERYARAK
Sbjct: 1624 SSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAK 1683

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1684 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1712

Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.
Homo sapiens (taxid: 9606)

>sp|Q99PV0|PRP8_MOUSE Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2

 Score =  305 bits (782), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 162/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ                        + +N
Sbjct: 1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1623

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  S+D MDSTTTQKYW+D+QLRWGDYDSHDIERYARAK
Sbjct: 1624 SSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAK 1683

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1684 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1712

Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.

Mus musculus (taxid: 10090)

>sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1

 Score =  303 bits (776), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/209 (72%), Positives = 162/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            E+ASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1497 ERASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1556

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ                        + +N
Sbjct: 1557 GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIQTVQKETIHPRKSYKMN 1616

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  LM  S+D MD+TTTQKYWLDVQLRWGDYDSHD+ERYARAK
Sbjct: 1617 SSCADVLLFAQYKWNVSRPSLMADSKDVMDNTTTQKYWLDVQLRWGDYDSHDVERYARAK 1676

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNL+
Sbjct: 1677 FLDYTTDNMSIYPSPTGVLIAIDLAYNLY 1705

Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8T295|PRP8_DICDI Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1

 Score =  281 bits (719), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 158/209 (75%), Gaps = 42/209 (20%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLT+AQRSGLNQIPNRRFTLWWSPTINR NVYVGFQVQLDLTGIFMH
Sbjct: 1493 EKASGFEESMKYKKLTHAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMH 1552

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ                        + +N
Sbjct: 1553 GKIPTLKISLIQIFRAHLWQKIHESLVMDLCQVFDQELDNLEISVVNKEAIHPRKSYKMN 1612

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  +RDT D+TTTQ YWLDVQL+WGD+DSHDIERY+RAK
Sbjct: 1613 SSCADILLRATHKWQVSRPSLLNDNRDTYDNTTTQ-YWLDVQLKWGDFDSHDIERYSRAK 1671

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTD+MS+YPSPTG LI +DLAYN++
Sbjct: 1672 FLDYTTDSMSLYPSPTGCLIGLDLAYNIY 1700

Central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. Interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp42 PE=1 SV=1

 Score =  279 bits (713), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/230 (62%), Positives = 162/230 (70%), Gaps = 48/230 (20%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI MH
Sbjct: 1528 EKASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIMMH 1587

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFR+HLWQK+HES+V DLCQ                        + +N
Sbjct: 1588 GKIPTLKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESLQIETVQKETIHPRKSYKMN 1647

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  +RD +D+TTT KYW+DVQLR+GDYDSHDIERY RAK
Sbjct: 1648 SSCADILLLAAYKWNVSRPSLLNDNRDVLDNTTTNKYWIDVQLRFGDYDSHDIERYTRAK 1707

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV 217
            FLDY+TD  S+YPSPTGVLI IDL YN+H       SA  N +  +K ++
Sbjct: 1708 FLDYSTDAQSMYPSPTGVLIGIDLCYNMH-------SAYGNWIPGMKPLI 1750

Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures (By similarity). Required for pre-spliceosome formation, which is the first step of pre-mRNA splicing. This protein is associated with snRNP U5. Has a role in branch site-3' splice site selection. Associates with the branch site-3' splice 3'-exon region.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP8 PE=1 SV=1

 Score =  260 bits (664), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 149/209 (71%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFE+SM++KKLT+AQR+GL+QIPNRRFTLWWSPTINRANVYVGF VQLDLTGIF+H
Sbjct: 1576 EKASGFEDSMQFKKLTHAQRTGLSQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIFLH 1635

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HESIV D+CQ                        + +N
Sbjct: 1636 GKIPTLKISLIQIFRAHLWQKIHESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMN 1695

Query: 125  FSP-----------------LMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  + D+     T K W DVQLR+GDYDSHDI RY RAK
Sbjct: 1696 SSAADITMESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRAK 1755

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDN+S+YPSPTGV+I IDLAYN++
Sbjct: 1756 FLDYTTDNVSMYPSPTGVMIGIDLAYNMY 1784

Required for pre-spliceosome formation, which is the first step of pre-mRNA splicing. This protein is associated with snRNP U5. Has a role in branch site-3' splice site selection. Associates with the branch site-3' splice 3'-exon region. Also has a role in cell cycle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
260791273	1638	hypothetical protein BRAFLDRAFT_125548 [	0.718	0.095	0.898	4e-84
345480262	2380	PREDICTED: LOW QUALITY PROTEIN: pre-mRNA	0.774	0.070	0.736	3e-82
193573533	2382	PREDICTED: pre-mRNA-processing-splicing	0.774	0.070	0.751	5e-82
45445269	436	apoptosis-regulated protein 1 [Homo sapi	0.778	0.387	0.733	6e-82
241685600	2297	pre-mRNA splicing factor Prp8, putative	0.774	0.073	0.746	8e-82
45445267	437	apoptosis-regulated protein 2 [Homo sapi	0.778	0.386	0.733	9e-82
15291963	1328	LD33339p [Drosophila melanogaster]	0.774	0.126	0.736	9e-82
242012963	2374	pre-mRNA-processing-splicing factor, put	0.774	0.070	0.741	1e-81
170062750	2340	pre-mRNA-processing-splicing factor 8 [C	0.774	0.071	0.741	1e-81
91093216	2364	PREDICTED: similar to pre-mrna splicing	0.774	0.071	0.746	1e-81

>gi|260791273|ref|XP_002590664.1| hypothetical protein BRAFLDRAFT_125548 [Branchiostoma floridae] gi|229275860|gb|EEN46675.1| hypothetical protein BRAFLDRAFT_125548 [Branchiostoma floridae]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 151/168 (89%), Positives = 155/168 (92%), Gaps = 12/168 (7%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 994  EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1053

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDV 148
            GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ             DTMDSTTTQKYWLDV
Sbjct: 1054 GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQ------------VDTMDSTTTQKYWLDV 1101

Query: 149  QLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            QLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTG++IAIDLAYNLH
Sbjct: 1102 QLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLMIAIDLAYNLH 1149

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345480262|ref|XP_003424117.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8 [Nasonia vitripennis]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 162/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1549 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1608

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ---------------------------- 120
            GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ                            
Sbjct: 1609 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1668

Query: 121  -------------HSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
                          +++  PL+  S+D MD+TTTQKYW+DVQLRWGDYDSHDIERYARAK
Sbjct: 1669 SSCADILLFSAYKXNVSGRPLLADSKDVMDNTTTQKYWIDVQLRWGDYDSHDIERYARAK 1728

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTG+LIAIDLAYNLH
Sbjct: 1729 FLDYTTDNMSIYPSPTGLLIAIDLAYNLH 1757

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193573533|ref|XP_001948639.1| PREDICTED: pre-mRNA-processing-splicing factor 8-like [Acyrthosiphon pisum]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/209 (75%), Positives = 163/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1550 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1609

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ                        + +N
Sbjct: 1610 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1669

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  S+DTMD+TTTQKYWLDVQLRWGDYDSHD+ERYARAK
Sbjct: 1670 SSCADILLFAAYKWNVSRPSLLADSKDTMDNTTTQKYWLDVQLRWGDYDSHDVERYARAK 1729

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1730 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1758

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45445269|gb|AAS64748.1| apoptosis-regulated protein 1 [Homo sapiens]

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 163/210 (77%), Gaps = 41/210 (19%)

Query: 28  QEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM 87
           +EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM
Sbjct: 2   REKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM 61

Query: 88  HGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSI 123
           HGKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ                        + +
Sbjct: 62  HGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKM 121

Query: 124 NFS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARA 166
           N S                  L+  S+D MDSTTTQKYW+D+QLRWGDYDSHDIERYARA
Sbjct: 122 NSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARA 181

Query: 167 KFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
           KFLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 182 KFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 211

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|241685600|ref|XP_002412787.1| pre-mRNA splicing factor Prp8, putative [Ixodes scapularis] gi|215506589|gb|EEC16083.1| pre-mRNA splicing factor Prp8, putative [Ixodes scapularis]

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 162/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1515 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1574

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ                        + +N
Sbjct: 1575 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1634

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  S+DTMD TTTQKYW+DVQLRWGDYDSHD+ERYARAK
Sbjct: 1635 SSCADVLLFATYKWNVSRPSLLADSKDTMDGTTTQKYWMDVQLRWGDYDSHDVERYARAK 1694

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1695 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1723

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45445267|gb|AAS64747.1| apoptosis-regulated protein 2 [Homo sapiens]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 163/210 (77%), Gaps = 41/210 (19%)

Query: 28  QEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM 87
           +EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM
Sbjct: 2   REKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM 61

Query: 88  HGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSI 123
           HGKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ                        + +
Sbjct: 62  HGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKM 121

Query: 124 NFS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARA 166
           N S                  L+  S+D MDSTTTQKYW+D+QLRWGDYDSHDIERYARA
Sbjct: 122 NSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARA 181

Query: 167 KFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
           KFLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 182 KFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 211

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|15291963|gb|AAK93250.1| LD33339p [Drosophila melanogaster]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 163/209 (77%), Gaps = 41/209 (19%)

Query: 29  EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
           EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 496 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 555

Query: 89  GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
           GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ                        + +N
Sbjct: 556 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 615

Query: 125 FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
            S                  L+  ++DTMD+TTTQKYWLD+QLRWGDYDSHD+ERYARAK
Sbjct: 616 SSCADILLFPAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWGDYDSHDVERYARAK 675

Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
           FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 676 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 704

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012963|ref|XP_002427193.1| pre-mRNA-processing-splicing factor, putative [Pediculus humanus corporis] gi|212511480|gb|EEB14455.1| pre-mRNA-processing-splicing factor, putative [Pediculus humanus corporis]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/209 (74%), Positives = 163/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1543 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1602

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ                        + +N
Sbjct: 1603 GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1662

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  S+DTMD+TTTQKYW+DVQLRWGDYDSHDIERYARAK
Sbjct: 1663 SSCADILLFASYKWNVSRPSLLADSKDTMDNTTTQKYWIDVQLRWGDYDSHDIERYARAK 1722

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1723 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1751

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062750|ref|XP_001866804.1| pre-mRNA-processing-splicing factor 8 [Culex quinquefasciatus] gi|167880569|gb|EDS43952.1| pre-mRNA-processing-splicing factor 8 [Culex quinquefasciatus]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/209 (74%), Positives = 163/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1586 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1645

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ                        + +N
Sbjct: 1646 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1705

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  ++DTMD+TTTQKYWLDVQLRWGDYDSHD+ERYARAK
Sbjct: 1706 SSCADILLFPAYKWNVSRPSLLADTKDTMDNTTTQKYWLDVQLRWGDYDSHDVERYARAK 1765

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1766 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1794

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093216|ref|XP_966931.1| PREDICTED: similar to pre-mrna splicing factor prp8 [Tribolium castaneum] gi|270016589|gb|EFA13035.1| hypothetical protein TcasGA2_TC010565 [Tribolium castaneum]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 163/209 (77%), Gaps = 41/209 (19%)

Query: 29   EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
            EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1533 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1592

Query: 89   GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
            GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ                        + +N
Sbjct: 1593 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1652

Query: 125  FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
             S                  L+  ++DTMD+TTTQKYW+DVQLRWGDYDSHDIERYARAK
Sbjct: 1653 SSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWIDVQLRWGDYDSHDIERYARAK 1712

Query: 168  FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1713 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1741

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
ASPGD|ASPL0000077099	2945	prp8 [Emericella nidulans (tax	0.410	0.030	0.955	2.2e-68
CGD|CAL0002209	2416	PRP8 [Candida albicans (taxid:	0.423	0.038	0.880	1.9e-63
FB|FBgn0033688	2396	Prp8 "pre-mRNA processing fact	0.423	0.038	0.989	1.6e-44
TAIR|locus:2141791	2332	AT4G38780 [Arabidopsis thalian	0.423	0.039	0.967	4e-44
UNIPROTKB|F1RHH8	2240	PRPF8 "Uncharacterized protein	0.423	0.041	0.978	4.8e-44
UNIPROTKB|E1BZT5	2335	PRPF8 "Uncharacterized protein	0.423	0.039	0.978	5.1e-44
UNIPROTKB|A7Z025	2335	PRPF8 "PRPF8 protein" [Bos tau	0.423	0.039	0.978	5.1e-44
UNIPROTKB|E2R4X9	2335	PRPF8 "Uncharacterized protein	0.423	0.039	0.978	5.1e-44
UNIPROTKB|Q6P2Q9	2335	PRPF8 "Pre-mRNA-processing-spl	0.423	0.039	0.978	5.1e-44
MGI|MGI:2179381	2335	Prpf8 "pre-mRNA processing fac	0.423	0.039	0.978	5.1e-44

ASPGD|ASPL0000077099 prp8 [Emericella nidulans (taxid:162425)]

 Score = 463 (168.0 bits), Expect = 2.2e-68, Sum P(2) = 2.2e-68
 Identities = 85/89 (95%), Positives = 89/89 (100%)

Query:    32 SGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKI 91
             SGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIF+HGKI
Sbjct:  2117 SGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFLHGKI 2176

Query:    92 PTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             PTLKISLIQIFRAHLWQK+HES+VMDLCQ
Sbjct:  2177 PTLKISLIQIFRAHLWQKIHESVVMDLCQ 2205

GO:0016539 "intein-mediated protein splicing" evidence=IDA

GO:0000393 "spliceosomal conformational changes to generate catalytic conformation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005681 "spliceosomal complex" evidence=IEA

CGD|CAL0002209 PRP8 [Candida albicans (taxid:5476)]

 Score = 448 (162.8 bits), Expect = 1.9e-63, Sum P(2) = 1.9e-63
 Identities = 81/92 (88%), Positives = 89/92 (96%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFE+S+K+KKLTNAQR GL+QIPNRRFTLWWSPTINRANVYVGF VQLDLTGIF+H
Sbjct:  1582 EKASGFEDSLKFKKLTNAQRQGLSQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIFLH 1641

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HES+V D+CQ
Sbjct:  1642 GKIPTLKISLIQIFRAHLWQKIHESVVQDICQ 1673

GO:0005682 "U5 snRNP" evidence=IEA

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0030623 "U5 snRNA binding" evidence=IEA

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

FB|FBgn0033688 Prp8 "pre-mRNA processing factor 8" [Drosophila melanogaster (taxid:7227)]

 Score = 485 (175.8 bits), Expect = 1.6e-44, P = 1.6e-44
 Identities = 91/92 (98%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1564 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1623

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1624 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1655

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS;IMP

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005682 "U5 snRNP" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

TAIR|locus:2141791 AT4G38780 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 4.0e-44, P = 4.0e-44
 Identities = 89/92 (96%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI+MH
Sbjct:  1503 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIYMH 1562

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ
Sbjct:  1563 GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQ 1594

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|F1RHH8 PRPF8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 480 (174.0 bits), Expect = 4.8e-44, P = 4.8e-44
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1407 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1466

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1467 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1498

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|E1BZT5 PRPF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 480 (174.0 bits), Expect = 5.1e-44, P = 5.1e-44
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1595

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|A7Z025 PRPF8 "PRPF8 protein" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 5.1e-44, P = 5.1e-44
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1595

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|E2R4X9 PRPF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 480 (174.0 bits), Expect = 5.1e-44, P = 5.1e-44
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1595

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

UNIPROTKB|Q6P2Q9 PRPF8 "Pre-mRNA-processing-splicing factor 8" [Homo sapiens (taxid:9606)]

 Score = 480 (174.0 bits), Expect = 5.1e-44, P = 5.1e-44
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1595

GO:0003723 "RNA binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0008380 "RNA splicing" evidence=TAS

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005682 "U5 snRNP" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:2179381 Prpf8 "pre-mRNA processing factor 8" [Mus musculus (taxid:10090)]

 Score = 480 (174.0 bits), Expect = 5.1e-44, P = 5.1e-44
 Identities = 90/92 (97%), Positives = 92/92 (100%)

Query:    29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
             EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct:  1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563

Query:    89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
             GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ
Sbjct:  1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQ 1595

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005682 "U5 snRNP" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8T295	PRP8_DICDI	No assigned EC number	0.6794	0.7695	0.0717	yes	N/A
Q6P2Q9	PRP8_HUMAN	No assigned EC number	0.7368	0.7741	0.0719	yes	N/A
O14187	SPP42_SCHPO	No assigned EC number	0.6217	0.8387	0.0770	yes	N/A
P34369	PRP8_CAEEL	No assigned EC number	0.7272	0.7741	0.0721	yes	N/A
Q99PV0	PRP8_MOUSE	No assigned EC number	0.7368	0.7741	0.0719	yes	N/A
P33334	PRP8_YEAST	No assigned EC number	0.6172	0.7741	0.0696	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	217
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	8e-93
pfam10596	160	pfam10596, U6-snRNA_bdg, U6-snRNA interacting doma	6e-66

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score =  296 bits (759), Expect = 8e-93
 Identities = 133/214 (62%), Positives = 144/214 (67%), Gaps = 41/214 (19%)

Query: 24   SRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLT 83
              L  EKASGFEESMK+KKLTNAQR GL+QIPNRRFTLWWSPTINRANVYVGFQVQLDLT
Sbjct: 1528 EGLFWEKASGFEESMKFKKLTNAQRMGLSQIPNRRFTLWWSPTINRANVYVGFQVQLDLT 1587

Query: 84   GIFMHGKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ----------------------- 120
            GI MHGKIPTLKISLIQIFR HLWQK+HES+V DLCQ                       
Sbjct: 1588 GILMHGKIPTLKISLIQIFRNHLWQKIHESVVGDLCQVLDKELDVLQIETVQKETVHPRK 1647

Query: 121  ----------------HSINFSP--LMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIER 162
                            +    S   L+   RD   +  T K W+DVQLRWGDYDSHDI R
Sbjct: 1648 SYKMNSSCADILLSGAYDWCVSSPSLLLEERDGGSNVRTNKLWIDVQLRWGDYDSHDIHR 1707

Query: 163  YARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
            YARAKFLDYTTD  S+YPSPTGV+I IDL YN+ 
Sbjct: 1708 YARAKFLDYTTDPQSMYPSPTGVVIGIDLCYNMW 1741

Length = 2365

>gnl|CDD|151125 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8

 Score =  200 bits (510), Expect = 6e-66
 Identities = 85/92 (92%), Positives = 91/92 (98%)

Query: 29  EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
           EKASGFEESMK+KKLTNAQRSGL+QIPNRRFTLWWSPTINRANVY+GFQVQLDLTG+FMH
Sbjct: 63  EKASGFEESMKFKKLTNAQRSGLSQIPNRRFTLWWSPTINRANVYIGFQVQLDLTGVFMH 122

Query: 89  GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ 120
           GKIPTLKISLIQIFRAHLWQK+HES+VMDL Q
Sbjct: 123 GKIPTLKISLIQIFRAHLWQKIHESLVMDLAQ 154

This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	100.0
KOG1795|consensus	2321		100.0
PF10596	160	U6-snRNA_bdg: U6-snRNA interacting domain of PrP8;	100.0

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=4.2e-107  Score=811.69  Aligned_cols=192  Identities=69%  Similarity=1.064  Sum_probs=188.0

Q ss_pred             eecccccceeecccCchhhhhhhhhhhhhhhcCCCCCCCceeeeeccccccceeeeeeeeeecccccccccCCchhhHHH
Q psy9260          19 VHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISL   98 (217)
Q Consensus        19 ~~~~weglfwekasgfE~s~k~kkLTnAQRsGLsQIPNRRFtLWWSPTINRanVyVGfqvQlDlTGIfMhGKipTLKiSl   98 (217)
                      .+++||||||||||||||||||||||||||+||||||||||||||||||||||||||||||||||||+||||||||||||
T Consensus      1523 gF~SweglFWEkasgfe~smkfkKLTnAQr~GLsQIPNRRFtLWWSPTINRaNVYVGfqVQLDlTGI~mHGKiPTLKISl 1602 (2365)
T COG5178        1523 GFRSWEGLFWEKASGFEESMKFKKLTNAQRMGLSQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGILMHGKIPTLKISL 1602 (2365)
T ss_pred             CcchhhhhhHhhhcchHHHHHHHHhhhhhhcccccCCCceeEEEecCcccccceEEEEEEEEechheeecCCCCceeehH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHH------------------------hcC-----------------CCcccccccccC
Q psy9260          99 IQIFRAHLWQKVHESIVMDLCQHS------------------------INF-----------------SPLMFISRDTMD  137 (217)
Q Consensus        99 IqIFR~hLWqkIHesiV~dlcqvl------------------------mns-----------------Psll~d~~d~~~  137 (217)
                      |||||+|||||||||||-||||||                        |||                 ||+|.|++|..+
T Consensus      1603 IQIFR~hLWqkIHESvV~dlCqvld~eldvlqiEtv~ketvHpRKSYkmnSScADIll~~~~~w~Vs~Psll~e~rD~~~ 1682 (2365)
T COG5178        1603 IQIFRNHLWQKIHESVVGDLCQVLDKELDVLQIETVQKETVHPRKSYKMNSSCADILLSGAYDWCVSSPSLLLEERDGGS 1682 (2365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccccccchHHHHHhhhhhhhccCCchhhhhcccccc
Confidence            999999999999999999999999                        555                 999999999999


Q ss_pred             CcccceeeEEeeeccCCCCCchhhHHHHhhhhcccCCCcccCCCCceeEEEeeehhhcccccCCCcccccchh
Q psy9260         138 STTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCV  210 (217)
Q Consensus       138 ~~~t~k~WiDvQLRWGdyDShdIerY~R~kfldYTtD~~SiYPSptG~ii~iDLaYN~~sayG~w~~g~~~~~  210 (217)
                      +..|+|+||||||||||||||||+||+||||+|||+|++|+||||||+||+||||||+|||||||++||++-.
T Consensus      1683 ~~~tnk~WiDVQLR~GDYDshdi~rY~RakFldyttD~qsmYPsptGv~igiDLcYNm~saYGNw~~glKpli 1755 (2365)
T COG5178        1683 NVRTNKLWIDVQLRWGDYDSHDIHRYARAKFLDYTTDPQSMYPSPTGVVIGIDLCYNMWSAYGNWNEGLKPLI 1755 (2365)
T ss_pred             cceeeeeEEEEEEeecCccccCHHHHHHhhhhhcccChhhcccCCCceEEEEeehhhhhhhhcccchhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999853

>KOG1795|consensus

Probab=100.00  E-value=2.4e-94  Score=722.92  Aligned_cols=193  Identities=74%  Similarity=1.103  Sum_probs=188.5

Q ss_pred             eeecccccceeecccCchhhhhhhhhhhhhhhcCCCCCCCceeeeeccccccceeeeeeeeeecccccccccCCchhhHH
Q psy9260          18 FVHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKIS   97 (217)
Q Consensus        18 ~~~~~weglfwekasgfE~s~k~kkLTnAQRsGLsQIPNRRFtLWWSPTINRanVyVGfqvQlDlTGIfMhGKipTLKiS   97 (217)
                      +.+++||||||||||||||+|||||||||||+||||||||||+|||||||||||||||||||+|||||||||||||||||
T Consensus      1486 t~f~s~e~Lfwekasgfees~k~KkltnaQr~gL~QipNrrftlwwspTinrAnvyvgfQvQldLTgi~mhgkIptlkIs 1565 (2321)
T KOG1795|consen 1486 TYFPSWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIYMHGKIPTLKIS 1565 (2321)
T ss_pred             cCcHHHHHHHHHhhcCchhhhHHHHHHHHHHhcccCCCccceEEeecchhhhhhheeeeEEeeccceeEEeccccceeee
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHH------------------------hcC-----------------CCccccccccc
Q psy9260          98 LIQIFRAHLWQKVHESIVMDLCQHS------------------------INF-----------------SPLMFISRDTM  136 (217)
Q Consensus        98 lIqIFR~hLWqkIHesiV~dlcqvl------------------------mns-----------------Psll~d~~d~~  136 (217)
                      ||||||||||||||||+|+|+||+|                        |||                 |+++.+++|..
T Consensus      1566 LiqifRaHlwQKihesvv~~lc~v~D~ELDal~iEtV~ketih~rKsykm~SScAdIll~~~~~~~vs~ps~i~~skd~~ 1645 (2321)
T KOG1795|consen 1566 LIQIFRAHLWQKIHESVVNDLCQVFDQELDALSIETVQKETIHPRKSYKMNSSCADILLGAGVKWGVSNPSLIPESKDLW 1645 (2321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhcCcchhhhccchhHHHhhhcceeecCCCccccccchhhc
Confidence            9999999999999999999999999                        555                 99999999999


Q ss_pred             CCcccceeeEEeeeccCCCCCchhhHHHHhhhhcccCCCcccCCCCceeEEEeeehhhcccccCCCcccccchh
Q psy9260         137 DSTTTQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCV  210 (217)
Q Consensus       137 ~~~~t~k~WiDvQLRWGdyDShdIerY~R~kfldYTtD~~SiYPSptG~ii~iDLaYN~~sayG~w~~g~~~~~  210 (217)
                      ++..++++|+|||||||||||||++||+||||||||+|++|+||||||+|||||||||+|||||||||||++-.
T Consensus      1646 ~~~~~~klw~dvqLr~gdyds~dv~rytrAkfLd~Ttd~~s~ypsptGv~i~iDL~YN~~sayGNw~~g~Kpli 1719 (2321)
T KOG1795|consen 1646 DPFFTAKLWIDVQLRWGDYDSHDVERYTRAKFLDYTTDNASQYPSPTGVLIGIDLAYNLHSAYGNWFPGLKPLI 1719 (2321)
T ss_pred             cccchhhhhhhhhhhccchhhhhHHHHHHhhhhhhhccccccCCCCCceEEEeeehhhhhhhhcccccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999853

>PF10596 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; InterPro: IPR019580 This entry represents the interacting site for U6-snRNA, which is part of U4/U6

Probab=100.00  E-value=6.9e-74  Score=475.06  Aligned_cols=105  Identities=86%  Similarity=1.245  Sum_probs=103.4

Q ss_pred             eecccccceeecccCchhhhhhhhhhhhhhhcCCCCCCCceeeeeccccccceeeeeeeeeecccccccccCCchhhHHH
Q psy9260          19 VHLLKSRLKQEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISL   98 (217)
Q Consensus        19 ~~~~weglfwekasgfE~s~k~kkLTnAQRsGLsQIPNRRFtLWWSPTINRanVyVGfqvQlDlTGIfMhGKipTLKiSl   98 (217)
                      .+|+|||+||||+|||||+||+||||||||+||||||||||||||||||||+||||||||||||||||||||||||||||
T Consensus        53 ~f~~Weglfwek~sgfE~~~k~~kLt~aqrsgl~qiPNRrf~LWWsPtINR~nvyvGfqvqldlTgIfmhGK~ptlkiS~  132 (160)
T PF10596_consen   53 GFPSWEGLFWEKASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISL  132 (160)
T ss_pred             CCCccceEEEecCcchhhhhhhhHhhhccccCcccccccccccccCCccccCCceEEEEeeccccceeccCcCchhhhhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHh
Q psy9260          99 IQIFRAHLWQKVHESIVMDLCQHSI  123 (217)
Q Consensus        99 IqIFR~hLWqkIHesiV~dlcqvlm  123 (217)
                      |||||+||||||||||||||||+|-
T Consensus       133 i~ifr~~lwqkih~svv~dl~~~~~  157 (160)
T PF10596_consen  133 IQIFRAHLWQKIHESVVMDLCQVFD  157 (160)
T ss_pred             hhcccccchheehHHHHHHHHHHHH
Confidence            9999999999999999999999983

U5 tri-snRNPs complex of the spliceosome is a prime candidate for the role of cofactor in the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
4i43_B	1564	Crystal Structure Of Prp8:aar2 Complex Length = 156		2e-70
3zef_B	1531	Crystal Structure Of Prp8:aar2 Complex: Second Crys		2e-70

>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex Length = 1564

Iteration: 1
 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 149/209 (71%), Gaps = 41/209 (19%)
Query: 29  EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
           EKASGFE+SM++KKLT+AQR+GL+QIPNRRFTLWWSPTINRANVYVGF VQLDLTGIF+H
Sbjct: 727 EKASGFEDSMQFKKLTHAQRTGLSQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIFLH 786
Query: 89  GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
           GKIPTLKISLIQIFRAHLWQK+HESIV D+CQ                        + +N
Sbjct: 787 GKIPTLKISLIQIFRAHLWQKIHESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMN 846
Query: 125 FSP-----------------LMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
            S                  L+  + D+     T K W DVQLR+GDYDSHDI RY RAK
Sbjct: 847 SSAADITMESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRAK 906
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
           FLDYTTDN+S+YPSPTGV+I IDLAYN++
Sbjct: 907 FLDYTTDNVSMYPSPTGVMIGIDLAYNMY 935

>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 1531

Iteration: 1
 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 149/209 (71%), Gaps = 41/209 (19%)
Query: 29  EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
           EKASGFE+SM++KKLT+AQR+GL+QIPNRRFTLWWSPTINRANVYVGF VQLDLTGIF+H
Sbjct: 694 EKASGFEDSMQFKKLTHAQRTGLSQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIFLH 753
Query: 89  GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
           GKIPTLKISLIQIFRAHLWQK+HESIV D+CQ                        + +N
Sbjct: 754 GKIPTLKISLIQIFRAHLWQKIHESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMN 813
Query: 125 FSP-----------------LMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
            S                  L+  + D+     T K W DVQLR+GDYDSHDI RY RAK
Sbjct: 814 SSAADITMESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRAK 873
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
           FLDYTTDN+S+YPSPTGV+I IDLAYN++
Sbjct: 874 FLDYTTDNVSMYPSPTGVMIGIDLAYNMY 902
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 7e-08
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 54/202 (26%)

Query: 11  EESQIYLFVHLLKSRLKQEKASGFE--ESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTIN 68
           E          + +   ++  + ++  + +   KLT    S LN +          P   
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---------EPAEY 371

Query: 69  RANVYVGFQVQLDLTGIFMHG-KIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSP 127
           R   +           +F     IPT    L+ +    +W  V +S VM +      +S 
Sbjct: 372 RKM-FDRL-------SVFPPSAHIPT---ILLSL----IWFDVIKSDVMVVVNKLHKYS- 415

Query: 128 LMFISRDTMDSTTTQKYWL-DVQLRW-----GDYDSHD--IERYARAKFLDYTTDNMSIY 179
              + +   +ST      +  + L        +Y  H   ++ Y   K           +
Sbjct: 416 --LVEKQPKEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIPK----------TF 459

Query: 180 PSPTGVLIAIDLAYNLHRYIDY 201
            S   +   +D  Y  + +I +
Sbjct: 460 DSDDLIPPYLD-QY-FYSHIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00