Diaphorina citri psyllid: psy9283


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGAYPKPGIGGSGDMFEDN
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
************************VQRTLAVRNSELTWREAKRQLRKDHRWDSA*LLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELE********************YVNTFGAYP**************
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MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGAYPKPGIGGSGDMFEDN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Transcription elongation regulator 1 Transcription factor that binds RNA polymerase II and inhibits the elongation of transcripts from target promoters. Regulates transcription elongation in a TATA box-dependent manner. Necessary for TAT-dependent activation of the human immunodeficiency virus type 1 (HIV-1) promoter.confidentO14776
Transcription elongation regulator 1 Transcription factor that binds RNA polymerase II and inhibits the elongation of transcripts from target promoters. Regulates transcription elongation in a TATA box-dependent manner.confidentQ8CGF7

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0000122 [BP]negative regulation of transcription from RNA polymerase II promoterprobableGO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0010629, GO:0050789, GO:0010605, GO:0019222, GO:2000112, GO:2000113, GO:0060255, GO:0006357, GO:0065007, GO:0048519, GO:0010468, GO:0045934, GO:0019219, GO:0009889, GO:0050794, GO:0045892, GO:0051171, GO:0051172, GO:2001141, GO:0051253, GO:0051252, GO:0006355, GO:0010556, GO:0008150, GO:0010558, GO:0048523
GO:0070064 [MF]proline-rich region bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0001106 [MF]RNA polymerase II transcription corepressor activityprobableGO:0001191, GO:0003714, GO:0003712, GO:0001104, GO:0001076, GO:0003674, GO:0000989, GO:0000988
GO:0001103 [MF]RNA polymerase II repressing transcription factor bindingprobableGO:0001085, GO:0008134, GO:0003674, GO:0005488, GO:0005515, GO:0070491

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 4FQG, chain A
Confidence level:very confident
Coverage over the Query: 31-197
View the alignment between query and template
View the model in PyMOL
Template: 3HFH, chain A
Confidence level:very confident
Coverage over the Query: 49-129
View the alignment between query and template
View the model in PyMOL