Psyllid ID: psy9283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGAYPKPGIGGSGDMFEDN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKdhrwdsadlldrDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIkedprytkfsssdrrCEREFKDYLKDKTSTAKAEFRELLQETKLIshkslgllheneNYLSEIEEILRNDkrflslehipEERTQIILTYLDelekrgppppptasepnrrlgnnyvntfgaypkpgiggsgdmfedn
Flexible Loop (DISEMBL)
mnetdkdadkkarqeaslrerekevqrtlavrnseltwreakrqlrkdhrwdsadlldrdekekLFNEHIEELTKKKREKFRELlnetsevtlssswkdirklikedprytkfsssdrrcereFKDYLKDKTSTAKAEFRELLQEtklishkslgllheNENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDelekrgppppptasepnrrlGNNYVNTfgaypkpgiggsgdmfedn
Low Complexity Region (SEG)
MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGAYPKPGIGGSGDMFEDN
Disordered region (IsUnstruct)
******************************************************************************************************************************************FRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLD**********************************************
Disordered Region (DISOPRED)
************************VQRTLAVRNSELTWREAKRQLRKDHRWDSA*LLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHE**NYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELE********************YVNTFGAYP**************
Disordered Region (DISEMBL)
***************************TLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEK**********EPNRRLGNNYVNTFGAYPKPGIGGSGDMFEDN
Disordered Region (DISPRO)
*********K******SLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRG****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGAYPKPGIGGSGDMFEDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
O14776	1098	Transcription elongation	yes	N/A	0.884	0.194	0.526	2e-63
Q8CGF7	1100	Transcription elongation	yes	N/A	0.884	0.194	0.526	3e-63
Q13017	1502	Rho GTPase-activating pro	no	N/A	0.719	0.115	0.233	1e-05
P97393	1501	Rho GTPase-activating pro	no	N/A	0.719	0.115	0.228	4e-05

>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/243 (52%), Positives = 184/243 (75%), Gaps = 29/243 (11%)

Query: 2    NETDKDADKKARQEASLREREKEVQRTLA-----------------------------VR 32
            +E +K+ +++AR EASLRERE+EVQ+  +                             VR
Sbjct: 853  SEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR 912

Query: 33   NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT 92
            +S+++W + +R LRKDHRW+S  LL+R+EKEKLFNEHIE LTKKKRE FR+LL+ETS +T
Sbjct: 913  SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAIT 972

Query: 93   LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHK 152
            L+S+WK+++K+IKEDPR  KFSSSDR+ +REF++Y++DK  TAKA+FR LL+ETK I+++
Sbjct: 973  LTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYR 1032

Query: 153  SLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEP 212
            S  L+ E++ +L ++E+IL+NDKR+L L+ +PEER ++I+ Y+D+L++RGPPPPPTASEP
Sbjct: 1033 SKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEP 1092

Query: 213  NRR 215
             RR
Sbjct: 1093 TRR 1095

Transcription factor that binds RNA polymerase II and inhibits the elongation of transcripts from target promoters. Regulates transcription elongation in a TATA box-dependent manner. Necessary for TAT-dependent activation of the human immunodeficiency virus type 1 (HIV-1) promoter.
Homo sapiens (taxid: 9606)

>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2

 Score =  241 bits (616), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/243 (52%), Positives = 184/243 (75%), Gaps = 29/243 (11%)

Query: 2    NETDKDADKKARQEASLREREKEVQRTLA-----------------------------VR 32
            +E +K+ +++AR EASLRERE+EVQ+  +                             VR
Sbjct: 855  SEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVR 914

Query: 33   NSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT 92
            +S+++W + +R LRKDHRW+S  LL+R+EKEKLFNEHIE LTKKKRE FR+LL+ETS +T
Sbjct: 915  SSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAIT 974

Query: 93   LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHK 152
            L+S+WK+++K+IKEDPR  KFSSSDR+ +REF++Y++DK  TAKA+FR LL+ETK I+++
Sbjct: 975  LTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYR 1034

Query: 153  SLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEP 212
            S  L+ E++ +L ++E+IL+NDKR+L L+ +PEER ++I+ Y+D+L++RGPPPPPTASEP
Sbjct: 1035 SKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRRGPPPPPTASEP 1094

Query: 213  NRR 215
             RR
Sbjct: 1095 TRR 1097

Transcription factor that binds RNA polymerase II and inhibits the elongation of transcripts from target promoters. Regulates transcription elongation in a TATA box-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 18  LREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKK 77
           L E+  + Q    V   +  W E     + + R    DLL   E EK++  H++ L  +K
Sbjct: 367 LMEKRADFQLCFVVL-EKTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEK 425

Query: 78  R-----EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT 132
           R     EKF++ L +   ++    W+++   + ED  Y   + +D +    +  + ++  
Sbjct: 426 RRVEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAYKYITEADSK--EVYGRHQREIV 483

Query: 133 STAKAEFRELLQE-TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQII 191
             AK EF+E+L E ++L     L     ++  +SEI  +L  + R+ +L+ +  +R  ++
Sbjct: 484 EKAKEEFQEMLFEHSELFYDLDLNATPSSDK-MSEIHTVLSEEPRYKALQKLAPDRESLL 542

Query: 192 LTYL 195
           L ++
Sbjct: 543 LKHI 546

GTPase-activating protein for Rho family members. May play a role in the reduction of the p21rasGTPase-activating potential of RASA1/p120GAP.

Homo sapiens (taxid: 9606)

>sp|P97393|RHG05_MOUSE Rho GTPase-activating protein 5 OS=Mus musculus GN=Arhgap5 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 18  LREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKK 77
           L E+  + Q    V   +  W E     + + R    DLL   E EK++  H++ L  +K
Sbjct: 367 LMEKRADFQLCFVVL-EKTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEK 425

Query: 78  R-----EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT 132
           R     EKF++ L +   ++    W+++   + ED  +   + +D +    +  + ++  
Sbjct: 426 RRIEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAFKYITEADSK--EVYGRHQREIV 483

Query: 133 STAKAEFRELLQE-TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQII 191
             AK EF+E+L E ++L     L     ++  +SEI  +L  + R+ +L+ +  +R  ++
Sbjct: 484 EKAKEEFQEMLFEHSELFYDLDLNATPSSDK-MSEIHTVLSEEPRYKALQKLAPDRESLL 542

Query: 192 LTYL 195
           L ++
Sbjct: 543 LKHI 546

GTPase-activating protein for Rho family members. May play a role in the reduction of the p21rasGTPase-activating potential of RASA1/p120GAP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
270002439	1134	hypothetical protein TcasGA2_TC004501 [T	0.863	0.184	0.661	2e-76
189234206	1118	PREDICTED: similar to HRP130 protein [Tr	0.863	0.186	0.661	2e-76
242013416	1066	transcription elongation regulator, puta	0.888	0.201	0.647	3e-75
158297954	1081	AGAP004745-PA [Anopheles gambiae str. PE	0.851	0.190	0.563	6e-67
170039563	340	transcription elongation regulator 1 [Cu	0.863	0.614	0.552	6e-66
322786633	1020	hypothetical protein SINV_80320 [Solenop	0.855	0.202	0.599	1e-65
328789068	1201	PREDICTED: transcription elongation regu	0.855	0.172	0.594	2e-65
380018205	1201	PREDICTED: transcription elongation regu	0.855	0.172	0.594	3e-65
345494563	1409	PREDICTED: hypothetical protein LOC10011	0.838	0.144	0.596	3e-65
383858632	1204	PREDICTED: transcription elongation regu	0.838	0.168	0.600	5e-65

>gi|270002439|gb|EEZ98886.1| hypothetical protein TcasGA2_TC004501 [Tribolium castaneum]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 188/239 (78%), Gaps = 30/239 (12%)

Query: 6    KDADKKARQEASLREREKEVQRTLA-----------------------------VRNSEL 36
            +D D++AR EASLREREKEVQRTLA                             VRN EL
Sbjct: 894  RDKDRQARAEASLREREKEVQRTLATHMRDRDKEREQHKRDEAIQHFNALLADLVRNPEL 953

Query: 37   TWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSS 96
            +WRE KR LRKDHRWD AD L R++KEKLFNEHIE L +KKREKFRELL+ET +VTL+SS
Sbjct: 954  SWREVKRILRKDHRWDLADSLSREDKEKLFNEHIEHLLRKKREKFRELLDETPDVTLTSS 1013

Query: 97   WKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGL 156
            WK+I+K+IKEDPRYTKF+SS+R CEREFKDYLKDK  TAK +F+ELLQETKLI+HKSL  
Sbjct: 1014 WKEIKKIIKEDPRYTKFASSER-CEREFKDYLKDKLITAKGQFKELLQETKLITHKSLSN 1072

Query: 157  LHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
            L EN+ ++ EIE+IL+NDKR+L L+HIP+ERTQ+IL YL+EL++RGPPPPPTASEPNRR
Sbjct: 1073 LRENQGFMQEIEDILKNDKRYLVLDHIPQERTQLILNYLEELDRRGPPPPPTASEPNRR 1131

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234206|ref|XP_970568.2| PREDICTED: similar to HRP130 protein [Tribolium castaneum]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/239 (66%), Positives = 188/239 (78%), Gaps = 30/239 (12%)

Query: 6    KDADKKARQEASLREREKEVQRTLA-----------------------------VRNSEL 36
            +D D++AR EASLREREKEVQRTLA                             VRN EL
Sbjct: 878  RDKDRQARAEASLREREKEVQRTLATHMRDRDKEREQHKRDEAIQHFNALLADLVRNPEL 937

Query: 37   TWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSS 96
            +WRE KR LRKDHRWD AD L R++KEKLFNEHIE L +KKREKFRELL+ET +VTL+SS
Sbjct: 938  SWREVKRILRKDHRWDLADSLSREDKEKLFNEHIEHLLRKKREKFRELLDETPDVTLTSS 997

Query: 97   WKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGL 156
            WK+I+K+IKEDPRYTKF+SS+R CEREFKDYLKDK  TAK +F+ELLQETKLI+HKSL  
Sbjct: 998  WKEIKKIIKEDPRYTKFASSER-CEREFKDYLKDKLITAKGQFKELLQETKLITHKSLSN 1056

Query: 157  LHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
            L EN+ ++ EIE+IL+NDKR+L L+HIP+ERTQ+IL YL+EL++RGPPPPPTASEPNRR
Sbjct: 1057 LRENQGFMQEIEDILKNDKRYLVLDHIPQERTQLILNYLEELDRRGPPPPPTASEPNRR 1115

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013416|ref|XP_002427403.1| transcription elongation regulator, putative [Pediculus humanus corporis] gi|212511780|gb|EEB14665.1| transcription elongation regulator, putative [Pediculus humanus corporis]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 188/244 (77%), Gaps = 29/244 (11%)

Query: 6    KDADKKARQEASLREREKEVQRTLA-----------------------------VRNSEL 36
            KD +K+AR EASLREREKEVQRTLA                             VRN++L
Sbjct: 822  KDREKQARVEASLREREKEVQRTLATHLRDRDKEREQHKRDEAVQHFNALLADLVRNADL 881

Query: 37   TWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSS 96
            +WREAKR LRKDHRW+ A+LLDR+EKEK+FN HIE+LT KKREKFRELL+ET EVTL+SS
Sbjct: 882  SWREAKRALRKDHRWELAELLDREEKEKIFNSHIEQLTHKKREKFRELLDETGEVTLTSS 941

Query: 97   WKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGL 156
            WK+++KLIKEDPR TKFSSS+R+ EREFKDY+KDK   AKA+FRELLQETKLI+H SL L
Sbjct: 942  WKEVKKLIKEDPRCTKFSSSERKIEREFKDYIKDKYVAAKADFRELLQETKLITHNSLKL 1001

Query: 157  LHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRL 216
              ENE ++ EIEEI + DKR+L L +IPEERT++IL YL++LEKRGPPPPPTA EPN+R 
Sbjct: 1002 FQENEQHIHEIEEIFKKDKRYLILNYIPEERTKLILFYLEDLEKRGPPPPPTAFEPNKRN 1061

Query: 217  GNNY 220
              NY
Sbjct: 1062 KGNY 1065

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297954|ref|XP_001689095.1| AGAP004745-PA [Anopheles gambiae str. PEST] gi|157014575|gb|EDO63512.1| AGAP004745-PA [Anopheles gambiae str. PEST]

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 133/236 (56%), Positives = 170/236 (72%), Gaps = 30/236 (12%)

Query: 9    DKKARQEASLREREKEVQRTLA-----------------------------VRNSELTWR 39
            ++KAR EAS++EREKEVQRTLA                             VRN++LTW+
Sbjct: 846  ERKARAEASIKEREKEVQRTLATHLRDRDKERQHHQRDEAMRHFNALLADLVRNADLTWK 905

Query: 40   EAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKD 99
            E K+ L+KDHRW+   +LDRD++E+LFNEHI  L +KKR+KFRE+L+E   + L+SSWKD
Sbjct: 906  EVKKLLKKDHRWELISMLDRDDRERLFNEHISNLVRKKRDKFREMLDEIPSLELTSSWKD 965

Query: 100  IRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHE 159
            I+K I++DPRY K++SS+R  EREF+DY+KDKT+ AK  FRELLQE K I+HKS  L  E
Sbjct: 966  IKKSIRDDPRYLKYNSSER-GEREFRDYIKDKTANAKLAFRELLQECKFITHKSFELYRE 1024

Query: 160  NENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
            N N+L E+E+ILRND R+L L HI  ERTQ+IL +L+EL KRGPPPPPTASE  RR
Sbjct: 1025 NANHLREVEDILRNDSRYLILHHIAGERTQMILAHLEELHKRGPPPPPTASESLRR 1080

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039563|ref|XP_001847600.1| transcription elongation regulator 1 [Culex quinquefasciatus] gi|167863118|gb|EDS26501.1| transcription elongation regulator 1 [Culex quinquefasciatus]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 132/239 (55%), Positives = 172/239 (71%), Gaps = 30/239 (12%)

Query: 6   KDADKKARQEASLREREKEVQRTLA-----------------------------VRNSEL 36
           K+ +++ R EAS++EREKEVQRTLA                             VRN+EL
Sbjct: 102 KERERRLRAEASIKEREKEVQRTLATHLRDRDKERQHHQRDEAIRHFNALLADLVRNAEL 161

Query: 37  TWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSS 96
           TW+E K+QL+KDHRW+  +LLDR+++E LFN+HI  L KKKR+KFRE+L+E S + L++ 
Sbjct: 162 TWKEVKKQLKKDHRWELVELLDREDREGLFNDHISNLVKKKRDKFREMLDEISSLELTTQ 221

Query: 97  WKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGL 156
           WKDI+K+I+EDPRY K++SS+R CEREF++YLKDK   AK  FRELL E K I+HKS   
Sbjct: 222 WKDIKKVIREDPRYLKYNSSER-CEREFREYLKDKAMNAKLSFRELLHECKFITHKSWDT 280

Query: 157 LHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             EN N+L EIE+ILRNDKR+L L H+  ER+Q+IL YL++L KRGPPPPPTASE +RR
Sbjct: 281 YRENLNHLREIEDILRNDKRYLVLSHMHAERSQMILGYLEDLHKRGPPPPPTASESSRR 339

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786633|gb|EFZ13028.1| hypothetical protein SINV_80320 [Solenopsis invicta]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/237 (59%), Positives = 178/237 (75%), Gaps = 30/237 (12%)

Query: 9    DKKARQEASLREREKEVQRTLA-----------------------------VRNSELTWR 39
            D++ R EASLRERE+EVQRTLA                             VRN +L WR
Sbjct: 780  DRERRAEASLREREREVQRTLATHLRDRDKERQHHRHTEAVQHFSALLADLVRNGDLAWR 839

Query: 40   EAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT-LSSSWK 98
            EAKRQLRKDHRW+ A+ LDR+EKE+LFNEHIE+L +KKR+KFRELL+E    T L++SWK
Sbjct: 840  EAKRQLRKDHRWELAESLDREEKERLFNEHIEQLGRKKRDKFRELLDEVGASTELTASWK 899

Query: 99   DIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLH 158
            DI+KL+K+DPRY KFSSSDR+CE+EFK+Y+KDK   AKA+FRELLQETKLI+ K+   + 
Sbjct: 900  DIKKLLKDDPRYLKFSSSDRKCEKEFKEYIKDKLVAAKADFRELLQETKLITDKTYKKVQ 959

Query: 159  ENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
            EN ++L+EIEEILR D+RFL LE    ERT++++ YL+EL +RGPPPPPTASEP+RR
Sbjct: 960  ENSSHLAEIEEILRKDRRFLVLEAAAAERTRLLMGYLEELARRGPPPPPTASEPSRR 1016

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789068|ref|XP_392573.4| PREDICTED: transcription elongation regulator 1 isoform 1 [Apis mellifera]

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/237 (59%), Positives = 176/237 (74%), Gaps = 30/237 (12%)

Query: 13   RQEASLREREKEVQRTLA-----------------------------VRNSELTWREAKR 43
            R EASLRERE+EVQRTLA                             VRN +L WREAKR
Sbjct: 965  RAEASLREREREVQRTLATHLRDRDKERQHHRHTEAVQHFSALLADLVRNGDLAWREAKR 1024

Query: 44   QLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT-LSSSWKDIRK 102
            QLRKDHRW+ A+ LDR+EKE+LFNEHIE+L++KKR+KFRELL+E    T L++SW+DI+K
Sbjct: 1025 QLRKDHRWELAESLDREEKERLFNEHIEQLSRKKRDKFRELLDEVGASTELTASWRDIKK 1084

Query: 103  LIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENEN 162
            L+K+DPRY KFSSSDR+CE+EFK+Y+KDK   AKA+FRELLQETKLI+ K+   + EN  
Sbjct: 1085 LLKDDPRYLKFSSSDRKCEKEFKEYIKDKLVAAKADFRELLQETKLITDKTYKKVQENSG 1144

Query: 163  YLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNN 219
            +L+EIEEILR D+RFL LE    ERT++++ YL+EL +RGPPPPPTASEP+RR   N
Sbjct: 1145 HLAEIEEILRKDRRFLVLEAAAAERTRLLMGYLEELARRGPPPPPTASEPSRRPTTN 1201

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018205|ref|XP_003693025.1| PREDICTED: transcription elongation regulator 1-like [Apis florea]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/237 (59%), Positives = 176/237 (74%), Gaps = 30/237 (12%)

Query: 13   RQEASLREREKEVQRTLA-----------------------------VRNSELTWREAKR 43
            R EASLRERE+EVQRTLA                             VRN +L WREAKR
Sbjct: 965  RAEASLREREREVQRTLATHLRDRDKERQHHRHTEAVQHFSALLADLVRNGDLAWREAKR 1024

Query: 44   QLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT-LSSSWKDIRK 102
            QLRKDHRW+ A+ LDR+EKE+LFNEHIE+L++KKR+KFRELL+E    T L++SW+DI+K
Sbjct: 1025 QLRKDHRWELAESLDREEKERLFNEHIEQLSRKKRDKFRELLDEVGASTELTASWRDIKK 1084

Query: 103  LIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENEN 162
            L+K+DPRY KFSSSDR+CE+EFK+Y+KDK   AKA+FRELLQETKLI+ K+   + EN  
Sbjct: 1085 LLKDDPRYLKFSSSDRKCEKEFKEYIKDKLVAAKADFRELLQETKLITDKTYKKVQENSG 1144

Query: 163  YLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNN 219
            +L+EIEEILR D+RFL LE    ERT++++ YL+EL +RGPPPPPTASEP+RR   N
Sbjct: 1145 HLAEIEEILRKDRRFLVLEAAAAERTRLLMGYLEELARRGPPPPPTASEPSRRPTTN 1201

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494563|ref|XP_001602786.2| PREDICTED: hypothetical protein LOC100118921 [Nasonia vitripennis]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/233 (59%), Positives = 173/233 (74%), Gaps = 30/233 (12%)

Query: 13   RQEASLREREKEVQRTLA-----------------------------VRNSELTWREAKR 43
            R EASLRERE+EVQRTLA                             VRN +L WREAKR
Sbjct: 1173 RAEASLREREREVQRTLATHLRDRDKERQHHRHTEAVQHFNALLADLVRNGDLAWREAKR 1232

Query: 44   QLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT-LSSSWKDIRK 102
            QLRKDHRW+  D LDR+EKEKLFNEH+E+L +KKR+KFRELLNE    T L++SWKD++K
Sbjct: 1233 QLRKDHRWELVDSLDREEKEKLFNEHVEQLGRKKRDKFRELLNEVGASTDLTASWKDVKK 1292

Query: 103  LIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENEN 162
            L+K+DPRY KFSSSDR+CE+EFK+Y+KDK   AKA+FRELLQETKLI+ K+   + +N  
Sbjct: 1293 LLKDDPRYLKFSSSDRKCEKEFKEYIKDKLVAAKADFRELLQETKLITDKTFKKVQDNSA 1352

Query: 163  YLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
            +L+EIE+IL+ DKRFL LE    ERT++++ YL+EL +RGPPPPPTASEP+RR
Sbjct: 1353 HLTEIEDILKKDKRFLVLEAAASERTRLLMGYLEELARRGPPPPPTASEPSRR 1405

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858632|ref|XP_003704803.1| PREDICTED: transcription elongation regulator 1-like [Megachile rotundata]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 140/233 (60%), Positives = 175/233 (75%), Gaps = 30/233 (12%)

Query: 13   RQEASLREREKEVQRTLA-----------------------------VRNSELTWREAKR 43
            R EASLRERE+EVQRTLA                             VRN +L WREAKR
Sbjct: 968  RAEASLREREREVQRTLATHLRDRDKERQHHRHTEAVQHFSALLADLVRNGDLAWREAKR 1027

Query: 44   QLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVT-LSSSWKDIRK 102
            QLRKDHRW+ A+ LDR+EKE+LFNEHIE+L++KKR+KFRELL+E    T L++SW+DI+K
Sbjct: 1028 QLRKDHRWELAESLDREEKERLFNEHIEQLSRKKRDKFRELLDEVGASTELTASWRDIKK 1087

Query: 103  LIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENEN 162
            L+K+DPRY KFSSSDR+CE+EFK+Y+KDK   AKA+FRELLQETKLI+ K+   + EN  
Sbjct: 1088 LLKDDPRYLKFSSSDRKCEKEFKEYIKDKLVAAKADFRELLQETKLITDKTYKKVQENSA 1147

Query: 163  YLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
            +L+EIEEILR D+RFL LE    ERT++++ YL+EL +RGPPPPPTASEP+RR
Sbjct: 1148 HLAEIEEILRKDRRFLVLEAAAAERTRLLMGYLEELARRGPPPPPTASEPSRR 1200

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
UNIPROTKB|F1NT10	1019	TCERG1 "Uncharacterized protei	0.867	0.206	0.558	5.3e-64
UNIPROTKB|F1MKU9	1062	TCERG1 "Uncharacterized protei	0.867	0.197	0.558	9.1e-64
UNIPROTKB|F1RM10	1068	TCERG1 "Uncharacterized protei	0.867	0.196	0.558	9.4e-64
RGD|1311748	1081	Tcerg1 "transcription elongati	0.867	0.194	0.558	1e-63
UNIPROTKB|O14776	1098	TCERG1 "Transcription elongati	0.867	0.191	0.558	1.1e-63
MGI|MGI:1926421	1100	Tcerg1 "transcription elongati	0.867	0.190	0.558	1.1e-63
WB|WBGene00022853	424	ZK1127.6 [Caenorhabditis elega	0.847	0.483	0.357	4.4e-36
WB|WBGene00022855	914	tcer-1 [Caenorhabditis elegans	0.842	0.223	0.357	4.8e-34
ZFIN|ZDB-GENE-081014-1	1503	arhgap5 "Rho GTPase activating	0.640	0.103	0.243	2.7e-08
UNIPROTKB|Q13017	1502	ARHGAP5 "Rho GTPase-activating	0.719	0.115	0.233	6e-08

UNIPROTKB|F1NT10 TCERG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 658 (236.7 bits), Expect = 5.3e-64, P = 5.3e-64
 Identities = 119/213 (55%), Positives = 175/213 (82%)

Query:     3 ETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEK 62
             E D++ ++  R+EA   +  K +   + VR+S+++W + +R LRKDHRW+S  LL+R+EK
Sbjct:   807 EIDREREQHKREEAI--QNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEK 863

Query:    63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
             EKLFNEHIE LTKKKRE FR+LL+ETS +TL+S+WK+++K+IKEDPR  KFSSSDR+ +R
Sbjct:   864 EKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQR 923

Query:   123 EFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEH 182
             EF++Y++DK  TAKA+FR LL+ETK I+++S  L+ E++ +L ++E+IL+NDKR+L L+ 
Sbjct:   924 EFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC 983

Query:   183 IPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             +PEER ++I++Y+D+L++RGPPPPPTASEP RR
Sbjct:   984 VPEERRKLIVSYVDDLDRRGPPPPPTASEPTRR 1016

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0070064 "proline-rich region binding" evidence=IEA

UNIPROTKB|F1MKU9 TCERG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 657 (236.3 bits), Expect = 9.1e-64, P = 9.1e-64
 Identities = 119/213 (55%), Positives = 174/213 (81%)

Query:     3 ETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEK 62
             E D++ ++  R+EA   +  K +   + VR+S+++W + +R LRKDHRW+S  LL+R+EK
Sbjct:   850 EIDREREQHKREEAI--QNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEK 906

Query:    63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
             EKLFNEHIE LTKKKRE FR+LL+ETS +TL+S+WK+++K+IKEDPR  KFSSSDR+ +R
Sbjct:   907 EKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQR 966

Query:   123 EFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEH 182
             EF++Y++DK  TAKA+FR LL+ETK I+++S  L+ E++ +L ++E+IL+NDKR+L L+ 
Sbjct:   967 EFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC 1026

Query:   183 IPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             +PEER ++I+ Y+D+L++RGPPPPPTASEP RR
Sbjct:  1027 VPEERRKLIVAYVDDLDRRGPPPPPTASEPTRR 1059

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

UNIPROTKB|F1RM10 TCERG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 657 (236.3 bits), Expect = 9.4e-64, P = 9.4e-64
 Identities = 119/213 (55%), Positives = 174/213 (81%)

Query:     3 ETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEK 62
             E D++ ++  R+EA   +  K +   + VR+S+++W + +R LRKDHRW+S  LL+R+EK
Sbjct:   856 EIDREREQHKREEAI--QNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEK 912

Query:    63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
             EKLFNEHIE LTKKKRE FR+LL+ETS +TL+S+WK+++K+IKEDPR  KFSSSDR+ +R
Sbjct:   913 EKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQR 972

Query:   123 EFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEH 182
             EF++Y++DK  TAKA+FR LL+ETK I+++S  L+ E++ +L ++E+IL+NDKR+L L+ 
Sbjct:   973 EFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC 1032

Query:   183 IPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             +PEER ++I+ Y+D+L++RGPPPPPTASEP RR
Sbjct:  1033 VPEERRKLIVAYVDDLDRRGPPPPPTASEPTRR 1065

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

RGD|1311748 Tcerg1 "transcription elongation regulator 1" [Rattus norvegicus (taxid:10116)]

 Score = 657 (236.3 bits), Expect = 1.0e-63, P = 1.0e-63
 Identities = 119/213 (55%), Positives = 174/213 (81%)

Query:     3 ETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEK 62
             E D++ ++  R+EA   +  K +   + VR+S+++W + +R LRKDHRW+S  LL+R+EK
Sbjct:   869 EIDREREQHKREEAI--QNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEK 925

Query:    63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
             EKLFNEHIE LTKKKRE FR+LL+ETS +TL+S+WK+++K+IKEDPR  KFSSSDR+ +R
Sbjct:   926 EKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQR 985

Query:   123 EFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEH 182
             EF++Y++DK  TAKA+FR LL+ETK I+++S  L+ E++ +L ++E+IL+NDKR+L L+ 
Sbjct:   986 EFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC 1045

Query:   183 IPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             +PEER ++I+ Y+D+L++RGPPPPPTASEP RR
Sbjct:  1046 VPEERRKLIVAYVDDLDRRGPPPPPTASEPTRR 1078

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=ISO

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISO

GO:0070064 "proline-rich region binding" evidence=ISO

UNIPROTKB|O14776 TCERG1 "Transcription elongation regulator 1" [Homo sapiens (taxid:9606)]

 Score = 657 (236.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/213 (55%), Positives = 174/213 (81%)

Query:     3 ETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEK 62
             E D++ ++  R+EA   +  K +   + VR+S+++W + +R LRKDHRW+S  LL+R+EK
Sbjct:   886 EIDREREQHKREEAI--QNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEK 942

Query:    63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
             EKLFNEHIE LTKKKRE FR+LL+ETS +TL+S+WK+++K+IKEDPR  KFSSSDR+ +R
Sbjct:   943 EKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQR 1002

Query:   123 EFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEH 182
             EF++Y++DK  TAKA+FR LL+ETK I+++S  L+ E++ +L ++E+IL+NDKR+L L+ 
Sbjct:  1003 EFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC 1062

Query:   183 IPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             +PEER ++I+ Y+D+L++RGPPPPPTASEP RR
Sbjct:  1063 VPEERRKLIVAYVDDLDRRGPPPPPTASEPTRR 1095

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IPI

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

MGI|MGI:1926421 Tcerg1 "transcription elongation regulator 1 (CA150)" [Mus musculus (taxid:10090)]

 Score = 657 (236.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/213 (55%), Positives = 174/213 (81%)

Query:     3 ETDKDADKKARQEASLREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEK 62
             E D++ ++  R+EA   +  K +   + VR+S+++W + +R LRKDHRW+S  LL+R+EK
Sbjct:   888 EIDREREQHKREEAI--QNFKALLSDM-VRSSDVSWSDTRRTLRKDHRWESGSLLEREEK 944

Query:    63 EKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCER 122
             EKLFNEHIE LTKKKRE FR+LL+ETS +TL+S+WK+++K+IKEDPR  KFSSSDR+ +R
Sbjct:   945 EKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQR 1004

Query:   123 EFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEH 182
             EF++Y++DK  TAKA+FR LL+ETK I+++S  L+ E++ +L ++E+IL+NDKR+L L+ 
Sbjct:  1005 EFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDC 1064

Query:   183 IPEERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             +PEER ++I+ Y+D+L++RGPPPPPTASEP RR
Sbjct:  1065 VPEERRKLIVAYVDDLDRRGPPPPPTASEPTRR 1097

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=ISO

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016363 "nuclear matrix" evidence=ISS

GO:0070064 "proline-rich region binding" evidence=IDA

WB|WBGene00022853 ZK1127.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 75/210 (35%), Positives = 135/210 (64%)

Query:    11 KARQEASLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
             K  ++  + E E   +  L   ++++E +W EA+R LRKD R+ + D+LD+  KE LF++
Sbjct:   213 KESEKQKMGEHEDTYRNLLIDLIKSTENSWHEARRILRKDERYANCDMLDKTRKESLFDD 272

Query:    69 HIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIK-EDPRYTKFSS-SDRRCEREFKD 126
             HI+ L +K+RE F ++L+   ++T    W+D +K+I+ E+  + K +S S+R+ ER+F+D
Sbjct:   273 HIKSLERKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIASNSERKVERDFRD 332

Query:   127 YLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIP-E 185
             + + +      EF+E+L ETK+I+HKS  L+ E E ++ +I  +L NDKR++ +  +   
Sbjct:   333 WQERRHDHLTDEFKEMLSETKIITHKSKKLMEEGEQHMKDILSVLENDKRWVRMTAMSAS 392

Query:   186 ERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             ER +++  +++ L ++G PPPPT  E +RR
Sbjct:   393 ERDRMLEDHIENLGRKGTPPPPTQQERDRR 422

GO:0000003 "reproduction" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

WB|WBGene00022855 tcer-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 380 (138.8 bits), Expect = 4.8e-34, P = 4.8e-34
 Identities = 75/210 (35%), Positives = 135/210 (64%)

Query:    11 KARQEASLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
             K  ++  + E E   +  L   ++++E +W EA+R LRKD R+ + D+LD+  KE LF++
Sbjct:   704 KESEKQKMGEHEDTYRNLLIDLIKSTENSWHEARRILRKDERYANCDMLDKTRKESLFDD 763

Query:    69 HIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIK-EDPRYTKFSS-SDRRCEREFKD 126
             HI+ L +K+RE F ++L+   ++T    W+D +K+I+ E+  + K +S S+R+ ER+F+D
Sbjct:   764 HIKSLERKRREAFFQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIASNSERKVERDFRD 823

Query:   127 YLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIP-E 185
             + + +      EF+E+L ETK+I+HKS  L+ E E ++ +I  +L NDKR++ +  +   
Sbjct:   824 WQERRHDHLTDEFKEMLSETKIITHKSKKLMEEGEQHM-DILSVLENDKRWVRMTAMSAS 882

Query:   186 ERTQIILTYLDELEKRGPPPPPTASEPNRR 215
             ER +++  +++ L ++G PPPPT  E +RR
Sbjct:   883 ERDRMLEDHIENLGRKGTPPPPTQQERDRR 912

GO:0000003 "reproduction" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

ZFIN|ZDB-GENE-081014-1 arhgap5 "Rho GTPase activating protein 5" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
 Identities = 40/164 (24%), Positives = 78/164 (47%)

Query:    38 WREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKR-----EKFRELLNETSEVT 92
             W E     + D R    D+L   + E+++  H++ L  +KR     EKF++ L     ++
Sbjct:   386 WYETDHLDKTDDRRVPFDILQTMQGERIYQNHVQHLISEKRRLEMKEKFKKTLERVHFIS 445

Query:    93 LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQE-TKLISH 151
                 W+++   + ED  Y   + SDRR    +  + ++    AK EF+E+L E  +L   
Sbjct:   446 PGQPWEEVMCFVMEDEAYKYITESDRR--DVYSRHQQEIVERAKEEFQEMLFEHAELFYD 503

Query:   152 KSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYL 195
               L      +  +SEI  +L  + R+ +L+ +  +R  ++L ++
Sbjct:   504 LDLNATPSYDK-MSEIHAVLNEEPRYRALQKLATDRESLLLKHI 546

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q13017 ARHGAP5 "Rho GTPase-activating protein 5" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 43/184 (23%), Positives = 87/184 (47%)

Query:    18 LREREKEVQRTLAVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKK 77
             L E+  + Q    V   +  W E     + + R    DLL   E EK++  H++ L  +K
Sbjct:   367 LMEKRADFQLCFVVLE-KTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQHLISEK 425

Query:    78 R-----EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT 132
             R     EKF++ L +   ++    W+++   + ED  Y   + +D +    +  + ++  
Sbjct:   426 RRVEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAYKYITEADSK--EVYGRHQREIV 483

Query:   133 STAKAEFRELLQE-TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQII 191
               AK EF+E+L E ++L     L     ++  +SEI  +L  + R+ +L+ +  +R  ++
Sbjct:   484 EKAKEEFQEMLFEHSELFYDLDLNATPSSDK-MSEIHTVLSEEPRYKALQKLAPDRESLL 542

Query:   192 LTYL 195
             L ++
Sbjct:   543 LKHI 546

GO:0005525 "GTP binding" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0005100 "Rho GTPase activator activity" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0007266 "Rho protein signal transduction" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CGF7	TCRG1_MOUSE	No assigned EC number	0.5267	0.8842	0.1945	yes	N/A
O14776	TCRG1_HUMAN	No assigned EC number	0.5267	0.8842	0.1948	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	242
pfam01846	50	pfam01846, FF, FF domain	2e-07
smart00441	55	smart00441, FF, Contains two conserved F residues	4e-07

>gnl|CDD|202007 pfam01846, FF, FF domain

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 76  KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDY 127
           + R+ F+ELL E  ++T  S+W +I+K +++DPRY    S   R E+ F+DY
Sbjct: 1   EARDAFKELLKEL-KITPYSTWSEIKKKLEKDPRYKALLSPSER-EQLFEDY 50

This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Length = 50

>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 75  KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKD 130
           ++ +E F+ELL E   +T  ++W + RK +K DPRY    S   R E+ F+D++++
Sbjct: 1   EEAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESER-EQLFEDHIEE 55

A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
KOG0155|consensus	617		99.88
KOG0155|consensus	617		99.88
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	99.82
KOG0152|consensus	463		99.48
KOG4271|consensus	1100		99.3
PF01846	51	FF: FF domain; InterPro: IPR002713 The FF domain m	99.18
smart00441	55	FF Contains two conserved F residues. A novel moti	99.11
PF01846	51	FF: FF domain; InterPro: IPR002713 The FF domain m	99.11
smart00441	55	FF Contains two conserved F residues. A novel moti	99.03
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	98.67
KOG0152|consensus	463		98.55
KOG4271|consensus	1100		96.91

>KOG0155|consensus

Probab=99.88  E-value=6.1e-22  Score=185.33  Aligned_cols=169  Identities=22%  Similarity=0.441  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q psy9283          17 SLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKK-----------KREKFRE   83 (242)
Q Consensus        17 ~~reRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k-----------~r~~F~~   83 (242)
                      .+.+|-.+|..+|.  +|++..+|+...+.|..||||..|.   ..+|+++|++||....+.           ..+.|.+
T Consensus       240 plEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~---s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~k  316 (617)
T KOG0155|consen  240 PLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLN---SGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKK  316 (617)
T ss_pred             CHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999998  9999999999999999999999875   459999999999975432           2389999


Q ss_pred             HHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhccccccc
Q psy9283          84 LLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS-----------TAKAEFRELLQETKLISHK  152 (242)
Q Consensus        84 LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~-----------kare~F~elL~E~~~i~~~  152 (242)
                      ||.++. +++.++|..+...+.+|+||++++.+ +.+|.+|++||-.+.+           +++.+|..||.+.. |+..
T Consensus       317 LL~e~~-~n~rs~y~~F~~K~gkD~Rfkaver~-rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~  393 (617)
T KOG0155|consen  317 LLAEAE-LNGRSSYSSFKSKYGKDSRFKAVERN-RDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRK  393 (617)
T ss_pred             HHHhCc-CCcccchHHHHHHhccCchhhhhhhh-hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhh
Confidence            999988 89999999999999999999999765 6789999999998653           68889999999887 8888


Q ss_pred             cccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhc
Q psy9283         153 SLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKR  201 (242)
Q Consensus       153 t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~  201 (242)
                      |         .|+.++..|.+++||.+|++. +.|+.||.+||..|...
T Consensus       394 S---------~ws~tk~~le~eery~aldsS-s~re~lf~eyia~l~~~  432 (617)
T KOG0155|consen  394 S---------KWSKTKDTLEDEERYIALDSS-STRESLFREYIANLGDE  432 (617)
T ss_pred             h---------hhhHHHHHhcccHHHhhhccc-chHHHHHHHHHHHHHhh
Confidence            8         999999999999999999974 57899999999999764

>KOG0155|consensus

Probab=99.88  E-value=3.5e-22  Score=186.95  Aligned_cols=148  Identities=44%  Similarity=0.824  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------CCCCCCCHHHHHHHHhhCCCcccCCC
Q psy9283           6 KDADKKARQEASLREREKEVQRTLA-----------------------------VRNSELTWREAKRQLRKDHRWDSADL   56 (242)
Q Consensus         6 ~~~~k~~~~e~~~reRe~e~~~~~~-----------------------------~~~~~~sW~ea~~~l~~DpR~~~~~~   56 (242)
                      .+.+|..+.++.||+|+.+|+.+++                             +.++..+|.++.+.|.+||||..++.
T Consensus       437 ~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all~d~irs~e~sw~e~rrilrkd~r~as~~~  516 (617)
T KOG0155|consen  437 IEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALLIDLIRSTENSWHEARRILRKDERYASCDM  516 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHhHHHhhcccccccCcc
Confidence            4788899999999999999997766                             99999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHHH
Q psy9283          57 LDRDEKEKLFNEHIEELTKKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAK  136 (242)
Q Consensus        57 L~~~ere~lF~eyi~~l~~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~kar  136 (242)
                      |...+++.||++||..|..++|.+|.+||+++..|++.+.|.+++++|..+++|..+.++++..+.-|++|+.....-+.
T Consensus       517 le~~~keklf~dhiksl~~k~re~f~qllde~~~it~~~~w~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~~~~~~~~  596 (617)
T KOG0155|consen  517 LEKTRKEKLFDDHIKSLERKRREAFFQLLDEHEKITPMMRWREAKKIIQEEETFVKIASSERKVERDFRDWQERRHDHLT  596 (617)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHhhhHHHHHHHhhhhhhhccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888889999999999999999


Q ss_pred             HHHHHHHhhcccccccc
Q psy9283         137 AEFRELLQETKLISHKS  153 (242)
Q Consensus       137 e~F~elL~E~~~i~~~t  153 (242)
                      ++|++||.|+.+|++.+
T Consensus       597 d~fr~~l~etk~it~~s  613 (617)
T KOG0155|consen  597 DEFREMLSETKIITHKS  613 (617)
T ss_pred             HHHHHHHHhhhHHhhhh
Confidence            99999999999999987

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=99.82  E-value=1.4e-19  Score=166.97  Aligned_cols=170  Identities=22%  Similarity=0.354  Sum_probs=146.4

Q ss_pred             HHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHh
Q psy9283          20 EREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKK-----------KREKFRELLN   86 (242)
Q Consensus        20 eRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k-----------~r~~F~~LL~   86 (242)
                      +-|.++.-+|.  .|+|+|+|+.++..| -||||..+.. ++-.|+.+|..|+.+..+.           -+.+|..||.
T Consensus       147 ~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~-DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~kml~  224 (590)
T COG5104         147 EAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDT-DPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKMLA  224 (590)
T ss_pred             HHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecC-ChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHhc
Confidence            34555666666  999999999999999 8999998865 7889999999999875432           2489999999


Q ss_pred             hcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHH----------------------------------
Q psy9283          87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT----------------------------------  132 (242)
Q Consensus        87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~----------------------------------  132 (242)
                      ....|+..|.|-+++..|..+|.|+++ .+..+..++|.+|++.+.                                  
T Consensus       225 ~n~~I~~yT~w~t~k~~fs~hP~y~s~-~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l~~E~f~~w~  303 (590)
T COG5104         225 GNSHIKYYTDWFTFKSIFSKHPYYSSV-VNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSLGSETFIIWL  303 (590)
T ss_pred             CCCccceeehhhhHHhhhccCcchhhh-cchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhcCcccchhhh
Confidence            988899999999999999999999987 455678999999998711                                  


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHhhc---ccccccc
Q psy9283         133 --------------------------------------------------------STAKAEFRELLQET---KLISHKS  153 (242)
Q Consensus       133 --------------------------------------------------------~kare~F~elL~E~---~~i~~~t  153 (242)
                                                                              +.+|++|+.||.+.   +.|+.++
T Consensus       304 l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l~~~~ki~~R~  383 (590)
T COG5104         304 LNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRM  383 (590)
T ss_pred             hhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhh
Confidence                                                                    15889999999987   7788899


Q ss_pred             ccccccccccHHHHHHHHhcChhhhhccCCchHH-HHHHHHHHHHHHhc
Q psy9283         154 LGLLHENENYLSEIEEILRNDKRFLSLEHIPEER-TQIILTYLDELEKR  201 (242)
Q Consensus       154 ~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR-~~Lf~dyi~~L~~~  201 (242)
                               +|++++++|++||||.+|.|..|+. ++||.|+|-+|+..
T Consensus       384 ---------kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenm  423 (590)
T COG5104         384 ---------KWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENM  423 (590)
T ss_pred             ---------hhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHH
Confidence                     9999999999999999999987666 99999999988754

>KOG0152|consensus

Probab=99.48  E-value=3.4e-14  Score=135.13  Aligned_cols=173  Identities=23%  Similarity=0.384  Sum_probs=150.1

Q ss_pred             CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhcCCCCCCCCHHH
Q psy9283          31 VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELT-----------KKKREKFRELLNETSEVTLSSSWKD   99 (242)
Q Consensus        31 ~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~-----------~k~r~~F~~LL~e~~~i~~~t~W~e   99 (242)
                      .++++|+|+++++.+++||||.++.  +..+++++|+.|+....           ++.+..|.+||.++..++..+.|.+
T Consensus        40 ~v~s~~n~~q~~~~~~~d~~~~~~~--~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e~~~~~~~~~~~~  117 (463)
T KOG0152|consen   40 NVPSNWNWDQAVRLISNDKRYNALR--DSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQEESKYKSSTEWKT  117 (463)
T ss_pred             CCCCCCCHHHHHHhccCCCcccccc--CchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhhcccccccccccc
Confidence            9999999999999999999999988  55999999999998821           3456999999999999999999999


Q ss_pred             HHHHHhcChhhccCCCChHHHHHHHHHHHHHHH-----------------------------------------------
Q psy9283         100 IRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT-----------------------------------------------  132 (242)
Q Consensus       100 v~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~-----------------------------------------------  132 (242)
                      +...+.+||+|+++...+  +..+|.+|+.++.                                               
T Consensus       118 ~~~~fa~~p~~~~~~~~~--~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  195 (463)
T KOG0152|consen  118 AKELFAGDPRWSEHISED--GRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLDRDWRRAQGRLTEDSGF  195 (463)
T ss_pred             cccccccccchhhccchh--hHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccccchHHHHhhhhhccccc
Confidence            999999999999986553  6799999999722                                               


Q ss_pred             --------------------------------------HHHHHHHHHHHhhcc---ccccccccccccccccHHHHHHHH
Q psy9283         133 --------------------------------------STAKAEFRELLQETK---LISHKSLGLLHENENYLSEIEEIL  171 (242)
Q Consensus       133 --------------------------------------~kare~F~elL~E~~---~i~~~t~~~i~e~~~~w~ei~~~L  171 (242)
                                                            ++++++|..+|.++.   .|+..|         .|.++.+.+
T Consensus       196 ~~~ldked~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T---------~w~~~~~~i  266 (463)
T KOG0152|consen  196 SEDLDKEDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPATGKITSTT---------GWEDLFPSI  266 (463)
T ss_pred             ccccchHHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhcccccccccc---------CCccccchh
Confidence                                                  157778888888874   788888         999999999


Q ss_pred             hcChhhhhccCCchHH-HHHHHHHHHHHHhcCCCCCCCCCCccccc
Q psy9283         172 RNDKRFLSLEHIPEER-TQIILTYLDELEKRGPPPPPTASEPNRRL  216 (242)
Q Consensus       172 ~~D~Ry~~l~~~~~eR-~~Lf~dyi~~L~~~~~~~~~~~~~~~~~~  216 (242)
                      ..|+||..+...+|+. +.+|.|+|+.|.....+-+|-..+...-+
T Consensus       267 ~~~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~  312 (463)
T KOG0152|consen  267 KDDPRSANALNQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKER  312 (463)
T ss_pred             cCCcchHhhcCCCCCChhhcccccccccccccccchHHHHHHHHhh
Confidence            9999999999888888 99999999999998888887777655433

>KOG4271|consensus

Probab=99.30  E-value=8.9e-12  Score=123.94  Aligned_cols=188  Identities=22%  Similarity=0.314  Sum_probs=159.7

Q ss_pred             CHHHHHHHHhhCCCcccC-------------------------CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q psy9283          37 TWREAKRQLRKDHRWDSA-------------------------DLLDRDEKEKLFNEHIEELTKKK-----REKFRELLN   86 (242)
Q Consensus        37 sW~ea~~~l~~DpR~~~~-------------------------~~L~~~ere~lF~eyi~~l~~k~-----r~~F~~LL~   86 (242)
                      -|.++.+.++..|.|..+                         +.|+..+..++|+.|+..+...+     +.+|...|.
T Consensus       141 ~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r~~i~~~~~fke~l~  220 (1100)
T KOG4271|consen  141 LWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNERKRIEMRRAFKENLE  220 (1100)
T ss_pred             HHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence            566999999998887643                         56677899999999999887543     489999999


Q ss_pred             hcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccHHH
Q psy9283          87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLISHKSLGLLHENENYLSE  166 (242)
Q Consensus        87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~e  166 (242)
                      +.+.|+|+-+|.++..+|+++.-|+.++.+.-.  .+|..|+..+..+|++.|+++|.|...+++....+..+...+...
T Consensus       221 e~~~itpg~P~eea~~~~~n~d~~qklte~v~t--~vy~r~qk~i~ekak~~~qE~l~e~s~Lf~d~~~~a~~fsdKmet  298 (1100)
T KOG4271|consen  221 ESPFITPGKPWEEARSFIMNEDFYQKLTESVYT--DVYGRHQKQIIEKAKEEFQELLLEYSELFYDLELDAKPFSDKMET  298 (1100)
T ss_pred             cCCccCCCCCHHHhhchhhhhhHHHhcccceee--ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccchhHH
Confidence            999999999999999999999999999877644  999999999999999999999999987777544566677779999


Q ss_pred             HHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccccccccCC
Q psy9283         167 IEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFGA  226 (242)
Q Consensus       167 i~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (242)
                      |..+|.-++||.++..+-++|+.|+..||--..--.+.++|..+.=..++.-+.+|++.-
T Consensus       299 i~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~  358 (1100)
T KOG4271|consen  299 IQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLG  358 (1100)
T ss_pred             HHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhc
Confidence            999999999999999998999999999998887666666666556556677777776543

>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []

Probab=99.18  E-value=5.2e-11  Score=80.22  Aligned_cols=51  Identities=39%  Similarity=0.757  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHH
Q psy9283          76 KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDY  127 (242)
Q Consensus        76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~ey  127 (242)
                      +.+++|++||.++. |++.++|+++.+.|.+||+|.+++.+...|+++|++|
T Consensus         1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey   51 (51)
T PF01846_consen    1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY   51 (51)
T ss_dssp             HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence            46789999999998 9999999999999999999999966667899999998

It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....

>smart00441 FF Contains two conserved F residues

Probab=99.11  E-value=1.6e-10  Score=78.85  Aligned_cols=53  Identities=36%  Similarity=0.679  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHH
Q psy9283          76 KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK  129 (242)
Q Consensus        76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~  129 (242)
                      +.+++|..||.+.+.++++++|+++++.|.+||+|.++... ..++.+|++||.
T Consensus         2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~-~~r~~lF~~~i~   54 (55)
T smart00441        2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSE-SEREQLFEDHIE   54 (55)
T ss_pred             hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcCh-HHHHHHHHHHHh
Confidence            46789999999998788999999999999999999998544 579999999986

A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.

>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []

Probab=99.11  E-value=1.7e-10  Score=77.68  Aligned_cols=51  Identities=31%  Similarity=0.503  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHH
Q psy9283         134 TAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTY  194 (242)
Q Consensus       134 kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dy  194 (242)
                      +|+++|++||.++. |++.|         +|.++.+.|.+||||.++...+++|+++|++|
T Consensus         1 ~a~~~F~~lL~e~~-i~~~s---------~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey   51 (51)
T PF01846_consen    1 KAREAFKELLKEHK-ITPYS---------SWEEVKPKLSKDPRYKAIGDSESERESLFEEY   51 (51)
T ss_dssp             HHHHHHHHHHHHTT-S-TTS---------SHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCC-CCCCC---------cHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence            58999999999998 99999         99999999999999999933447899999998

It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....

>smart00441 FF Contains two conserved F residues

Probab=99.03  E-value=5.6e-10  Score=76.12  Aligned_cols=53  Identities=34%  Similarity=0.518  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHH
Q psy9283         134 TAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLD  196 (242)
Q Consensus       134 kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~  196 (242)
                      +++++|.+||.+++.+++.|         +|+++.+.|.+||||.++.+ ..+|+.||++||.
T Consensus         2 ~~~~~F~~LL~e~~~~~~~~---------~W~~~~~~~~~d~ry~~l~~-~~~r~~lF~~~i~   54 (55)
T smart00441        2 EAKEAFKELLKEHEVITPDT---------TWSEARKKLKNDPRYKALLS-ESEREQLFEDHIE   54 (55)
T ss_pred             hHHHHHHHHHHhCCCCCCCC---------cHHHHHHHHhcChHHHHhcC-hHHHHHHHHHHHh
Confidence            68999999999999898888         99999999999999998875 4688999999996

A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=98.67  E-value=2.4e-07  Score=86.68  Aligned_cols=111  Identities=19%  Similarity=0.266  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhh
Q psy9283          77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK-----------TSTAKAEFRELLQE  145 (242)
Q Consensus        77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l-----------~~kare~F~elL~E  145 (242)
                      ...+|..||.++. |.|.++|..+...+ .||+|--+..+.--|..+|+.|+...           .++-+.+|.+||..
T Consensus       148 AEk~F~~~L~e~q-Vdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~kml~~  225 (590)
T COG5104         148 AEKEFITMLKENQ-VDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKMLAG  225 (590)
T ss_pred             HHHHHHHHHhhcc-CCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHhcC
Confidence            3479999999876 99999999999998 89998877665556889999999873           34677999999999


Q ss_pred             ccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHH
Q psy9283         146 TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELE  199 (242)
Q Consensus       146 ~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~  199 (242)
                      +.-|.+.|         .|..+..++++.|-|.++.. ..+..++|.+|++.|-
T Consensus       226 n~~I~~yT---------~w~t~k~~fs~hP~y~s~~n-E~~krQ~F~~ykdkl~  269 (590)
T COG5104         226 NSHIKYYT---------DWFTFKSIFSKHPYYSSVVN-EKTKRQTFQKYKDKLG  269 (590)
T ss_pred             CCccceee---------hhhhHHhhhccCcchhhhcc-hHHHHHHHHHHHHHhh
Confidence            98899999         99999999999999997763 4556999999999884

>KOG0152|consensus

Probab=98.55  E-value=2e-07  Score=89.18  Aligned_cols=137  Identities=22%  Similarity=0.372  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhh
Q psy9283          77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKT-----------STAKAEFRELLQE  145 (242)
Q Consensus        77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~-----------~kare~F~elL~E  145 (242)
                      ...+|+.||.... +.+.++|+.+.+.+.+||+|.++.... .+.+.|+.|...+.           ++++++|..+|.+
T Consensus        28 a~~~f~~~lrd~~-v~s~~n~~q~~~~~~~d~~~~~~~~~~-~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e  105 (463)
T KOG0152|consen   28 AKRAFKELLRDAN-VPSNWNWDQAVRLISNDKRYNALRDSS-ERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQE  105 (463)
T ss_pred             hHHHHHHHHhhcC-CCCCCCHHHHHHhccCCCccccccCch-hhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhh
Confidence            4589999999876 999999999999999999999996554 68899999988722           3799999999999


Q ss_pred             ccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccccccccC
Q psy9283         146 TKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPTASEPNRRLGNNYVNTFG  225 (242)
Q Consensus       146 ~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (242)
                      ...+...+         .|+.....+..||+|.++..  .++..+|.+||.+|.+++.+-.---...+-..-++.+|.++
T Consensus       106 ~~~~~~~~---------~~~~~~~~fa~~p~~~~~~~--~~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~  174 (463)
T KOG0152|consen  106 ESKYKSST---------EWKTAKELFAGDPRWSEHIS--EDGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSES  174 (463)
T ss_pred             cccccccc---------cccccccccccccchhhccc--hhhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccc
Confidence            98888888         89999999999999998875  37999999999999987665443322233334455555544


Q ss_pred             C
Q psy9283         226 A  226 (242)
Q Consensus       226 ~  226 (242)
                      -
T Consensus       175 ~  175 (463)
T KOG0152|consen  175 S  175 (463)
T ss_pred             c
Confidence            3

>KOG4271|consensus

Probab=96.91  E-value=0.0075  Score=61.58  Aligned_cols=150  Identities=19%  Similarity=0.347  Sum_probs=109.0

Q ss_pred             HHHHHHHHhc-CCCCCCCHHHHHHHHhhCCCcccCCC-CCHHHHHHHHHHHHHHHHHH-----HH-------HHHHHHHh
Q psy9283          21 REKEVQRTLA-VRNSELTWREAKRQLRKDHRWDSADL-LDRDEKEKLFNEHIEELTKK-----KR-------EKFRELLN   86 (242)
Q Consensus        21 Re~e~~~~~~-~~~~~~sW~ea~~~l~~DpR~~~~~~-L~~~ere~lF~eyi~~l~~k-----~r-------~~F~~LL~   86 (242)
                      -+.++.-.++ ++.-.+.|-.+...|...|.|..+-. -...-...+|..||.+++..     +|       .+|..||.
T Consensus        54 ~k~~f~~lvs~~v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l~  133 (1100)
T KOG4271|consen   54 AKDKFETLVSQAVPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLLP  133 (1100)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444554444 66667789999999999999986532 24566788999999998753     22       78998887


Q ss_pred             hcCCCCCCCCHHHHHHHHhcChhhccCCC----------------------C----hHHHHHHHHHHHHHHHH-----HH
Q psy9283          87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSS----------------------S----DRRCEREFKDYLKDKTS-----TA  135 (242)
Q Consensus        87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~----------------------~----d~~re~lF~eyi~~l~~-----ka  135 (242)
                      ....|  ..-|.+++++++..|.|..+-.                      +    .-+-+++|+.|+..+..     ..
T Consensus       134 ~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r~~i~~  211 (1100)
T KOG4271|consen  134 NLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNERKRIEM  211 (1100)
T ss_pred             cHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhhhhHHH
Confidence            55544  4556699998888876533200                      0    11247899998887543     57


Q ss_pred             HHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhcc
Q psy9283         136 KAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLE  181 (242)
Q Consensus       136 re~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~  181 (242)
                      +.+|.+.|.+..+|+..-         .|.++...+.++.-|+-+.
T Consensus       212 ~~~fke~l~e~~~itpg~---------P~eea~~~~~n~d~~qklt  248 (1100)
T KOG4271|consen  212 RRAFKENLEESPFITPGK---------PWEEARSFIMNEDFYQKLT  248 (1100)
T ss_pred             HHHHHHhhhcCCccCCCC---------CHHHhhchhhhhhHHHhcc
Confidence            899999999999998876         7999988888888876553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
4fqg_A	190	Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat		2e-56
2dof_A	85	Solution Structure Of The Fourth Ff Domain Of Human		4e-14

>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain Length = 190

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 147/171 (85%)
Query: 31  VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFRELLNETSE 90
           VR+S+++W + +R LRKDHRW+S  LL+R+EKEKLFNEHIE LTKKKRE FR+LL+ETS 
Sbjct: 20  VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSA 79
Query: 91  VTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELLQETKLIS 150
           +TL+S+WK+++K+IKEDPR  KFSSSDR+ +REF++Y++DK  TAKA+FR LL+ETK I+
Sbjct: 80  ITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFIT 139
Query: 151 HKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKR 201
           ++S  L+ E++ +L ++E+IL+NDKR+L L+ +PEER ++I+ Y+D+L++R
Sbjct: 140 YRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDRR 190

>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human Transcription Factor Ca150 Length = 85

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 31 VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKRE 79
          VR+S+++W + +R LRKDHRW+S  LL+R+EKEKLFNEHIE LTKKKRE
Sbjct: 31 VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRE 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
2dof_A	85	Transcription elongation regulator 1; FF domain, s	4e-13
3hfh_A	190	Transcription elongation regulator 1; helix bundle	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 11 KARQEASLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
          + R++    E  +  +  L+  VR+S+++W + +R LRKDHRW+S  LL+R+EKEKLFNE
Sbjct: 9  REREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNE 68

Query: 69 HIEELTKKKRE 79
          HIE LTKKKRE
Sbjct: 69 HIEALTKKKRE 79

>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 30  AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEEL-----------TKKKR 78
           A  N   T+ E       D R+ + +     ++E LFNE +               +   
Sbjct: 84  AXFNPRATFSEFAAXHAXDSRFXAIEX--MXDREALFNEFVAAARXXEXEDSXTRGEXIX 141

Query: 79  EKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK 129
             F ELL+    +   S W  +   ++ DPRY    SS  R E  F  Y++
Sbjct: 142 SDFFELLSNH-HLDSQSRWSXVXDXVESDPRYXAVDSSSMR-EDLFXQYIE 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 45/187 (24%)

Query: 22  EKEVQRTLAVRNS-ELTWR------EAKRQLRKD---HR-----------WDSADLLDRD 60
            K  + +L  +   E T        E K +L  +   HR           +DS DL+   
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 61  EKEKLFNE---HIEELTK-KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSS 116
             +  ++    H++ +   ++   FR +        L   + + +K+  +   +    S 
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVF-------LDFRFLE-QKIRHDSTAWNASGSI 520

Query: 117 DRRCE--REFKDYLKDKTSTAKAEFRELLQ-----ETKLISHKS-----LGLLHENENYL 164
               +  + +K Y+ D     +     +L      E  LI  K      + L+ E+E   
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Query: 165 SEIEEIL 171
            E  + +
Sbjct: 581 EEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 65/243 (26%)

Query: 15  EASLREREKE--VQRTLAVRNSELTWREAKR----------QLRKDH--RWDSADLLDRD 60
             +L   E +  + + L  R  +L  RE             +  +D    WD+   ++ D
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 61  EKEKLFNEHIEELT-KKKREKFREL--LNETSEV---TLSSSWKDI-------------- 100
           +   +    +  L   + R+ F  L     ++ +    LS  W D+              
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 101 RKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTAKAEFRELL---QETKLISHKSLGLL 157
             L+++ P+ +  S      E      LK K     A  R ++      K      L   
Sbjct: 414 YSLVEKQPKESTISIPSIYLE------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 158 HENENY--------LSEIE-----EILRN---DKRFLS--LEH--IPEERTQIILTYLDE 197
           +  + Y        L  IE      + R    D RFL   + H       +  IL  L +
Sbjct: 468 YL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 198 LEK 200
           L+ 
Sbjct: 527 LKF 529

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
3hfh_A	190	Transcription elongation regulator 1; helix bundle	99.97
3hfh_A	190	Transcription elongation regulator 1; helix bundle	99.8
2dof_A	85	Transcription elongation regulator 1; FF domain, s	99.28
2doe_A	83	Transcription elongation regulator 1; FF domain, s	99.22
2doe_A	83	Transcription elongation regulator 1; FF domain, s	99.18
2cqn_A	77	Formin-binding protein 3; FF domain, structural ge	99.16
1uzc_A	71	Hypothetical protein FLJ21157; nuclear protein, st	99.15
1uzc_A	71	Hypothetical protein FLJ21157; nuclear protein, st	99.1
2dod_A	82	Transcription elongation regulator 1; FF domain, s	99.09
2b7e_A	59	PRE-mRNA processing protein PRP40; structural prot	99.04
2cqn_A	77	Formin-binding protein 3; FF domain, structural ge	99.01
2dod_A	82	Transcription elongation regulator 1; FF domain, s	98.99
2juc_A	59	PRE-mRNA-splicing factor URN1; FF, helical bundle,	98.83
2dof_A	85	Transcription elongation regulator 1; FF domain, s	98.81
2b7e_A	59	PRE-mRNA processing protein PRP40; structural prot	98.77
2juc_A	59	PRE-mRNA-splicing factor URN1; FF, helical bundle,	98.44
2kfd_A	69	PRE-mRNA-processing protein PRP40; FF domain, mRNA	95.51
2kfd_A	69	PRE-mRNA-processing protein PRP40; FF domain, mRNA	91.75
2k85_A	69	Glucocorticoid receptor DNA-binding factor 1; FF d	91.15
2k85_A	69	Glucocorticoid receptor DNA-binding factor 1; FF d	89.75

>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A

Probab=99.97  E-value=6.1e-31  Score=222.39  Aligned_cols=161  Identities=16%  Similarity=0.324  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHh
Q psy9283          20 EREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKK-----------KREKFRELLN   86 (242)
Q Consensus        20 eRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k-----------~r~~F~~LL~   86 (242)
                      ++.+.+..+|.  +|+|+|+|+.+++.|++||||.+|   +.++|+++|++||..+.+.           .+++|.+||.
T Consensus         6 e~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al---~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~   82 (190)
T 3hfh_A            6 ARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL---NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMME   82 (190)
T ss_dssp             HHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777776  999999999999999999999987   5699999999999986533           3589999999


Q ss_pred             hcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhcccccccccc
Q psy9283          87 ETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS-----------TAKAEFRELLQETKLISHKSLG  155 (242)
Q Consensus        87 e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~-----------kare~F~elL~E~~~i~~~t~~  155 (242)
                      +++ |+|.++|.++...|.+||+|.+++. +.+|+.+|++|+..+..           +++++|.+||.+. .|++.|  
T Consensus        83 e~~-i~~~~~w~~~~~~~~~Dpr~~~~~~-~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t--  157 (190)
T 3hfh_A           83 EAX-FNPRATFSEFAAXHAXDSRFXAIEX-MXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQS--  157 (190)
T ss_dssp             -------------------TCCTTTTSCT-TTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTC--
T ss_pred             HcC-CCCCCCHHHHHHHhCCCchhhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCC--
Confidence            876 9999999999999999999999974 45789999999999753           6889999999999 699999  


Q ss_pred             ccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHH
Q psy9283         156 LLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLD  196 (242)
Q Consensus       156 ~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~  196 (242)
                             +|.+++..|.+||||.+|... .+|+.+|++||+
T Consensus       158 -------~W~~~~~~l~~D~ry~~v~~~-~~R~~~F~eyi~  190 (190)
T 3hfh_A          158 -------RWSXVXDXVESDPRYXAVDSS-SMREDLFXQYIE  190 (190)
T ss_dssp             -------CHHHHHHHHSSSHHHHTSCCH-HHHHHHHHHHHC
T ss_pred             -------CHHHHHHHHhhChHhhcCCCH-HHHHHHHHHHhC
Confidence                   999999999999999998752 379999999983

>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A

Probab=99.80  E-value=1.1e-19  Score=153.30  Aligned_cols=118  Identities=24%  Similarity=0.410  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------hc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHH
Q psy9283           8 ADKKARQEASLREREKEVQRT---------------LA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHI   70 (242)
Q Consensus         8 ~~k~~~~e~~~reRe~e~~~~---------------~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi   70 (242)
                      .+||+.++..+..|.++.+.+               |.  +++|.++|+++++.+++||||.+++.  ..+|+++|++||
T Consensus        45 ~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e~~i~~~~~w~~~~~~~~~Dpr~~~~~~--~~eR~~lF~eyi  122 (190)
T 3hfh_A           45 XERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEEAXFNPRATFSEFAAXHAXDSRFXAIEX--MXDREALFNEFV  122 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------TCCTTTTSCT--TTTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhCCCchhhcCcc--chHHHHHHHHHH
Confidence            566777766666655444322               22  79999999999999999999999984  499999999999


Q ss_pred             HHHHH-----------HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHH
Q psy9283          71 EELTK-----------KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK  129 (242)
Q Consensus        71 ~~l~~-----------k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~  129 (242)
                      ..|++           +.+.+|.+||.+. .|++.|+|.+++..|.+||+|++|++++ .|+.+|++||.
T Consensus       123 ~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W~~~~~~l~~D~ry~~v~~~~-~R~~~F~eyi~  190 (190)
T 3hfh_A          123 AAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRWSXVXDXVESDPRYXAVDSSS-MREDLFXQYIE  190 (190)
T ss_dssp             HHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCHHHHHHHHSSSHHHHTSCCHH-HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCHHHHHHHHhhChHhhcCCCHH-HHHHHHHHHhC
Confidence            99864           3458999999998 5999999999999999999999997653 68899999983

>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=99.28  E-value=7.4e-13  Score=96.69  Aligned_cols=61  Identities=57%  Similarity=0.961  Sum_probs=55.5

Q ss_pred             HHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9283          22 EKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKREKFR   82 (242)
Q Consensus        22 e~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k~r~~F~   82 (242)
                      +..|+..|.  |.+|+.||.++.+.|.+||||..++.|+..+++.||++||..|.++.+.+|+
T Consensus        20 ~~~F~aLL~DlIr~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~r~~f~   82 (85)
T 2dof_A           20 IQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRESGP   82 (85)
T ss_dssp             HHHHHHHHHHHTCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666676  9999999999999999999999888999999999999999999999887775

>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=99.22  E-value=3.2e-11  Score=88.66  Aligned_cols=66  Identities=20%  Similarity=0.430  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcCCCCCCC
Q psy9283         132 TSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRGPPPPPT  208 (242)
Q Consensus       132 ~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~~~~~~~  208 (242)
                      ..+++++|..||.+.+ |+..|         +|..+.++|.+||||.++.. +.+|++||++||.+|.+++....|.
T Consensus        16 ~~k~~~~F~~mL~e~~-I~~~s---------~W~~~~~~i~~Dpry~av~~-~~eRe~lF~eYi~~l~~~e~~e~~~   81 (83)
T 2doe_A           16 GEKIKSDFFELLSNHH-LDSQS---------RWSKVKDKVESDPRYKAVDS-SSMREDLFKQYIEKIAKNLDSSGPS   81 (83)
T ss_dssp             HHHHHHHHHHHHHHTT-CCTTC---------CHHHHHHHHTTSTHHHHCCC-HHHHHHHHHHHHHHHHSCCCCCSTT
T ss_pred             HHHHHHHHHHHHhhCC-CCCCC---------cHHHHHHHHccCHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcccCC
Confidence            4589999999999999 99999         99999999999999998864 4789999999999999887776665

>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=99.18  E-value=4.6e-11  Score=87.83  Aligned_cols=57  Identities=28%  Similarity=0.550  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH
Q psy9283          75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS  133 (242)
Q Consensus        75 ~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~  133 (242)
                      .+.+++|..||.+++ |+++++|++|++.|.+||+|.+++. +.+|+++|++||..+..
T Consensus        17 ~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~-~~eRe~lF~eYi~~l~~   73 (83)
T 2doe_A           17 EKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDS-SSMREDLFKQYIEKIAK   73 (83)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCC-HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence            456799999999999 9999999999999999999999954 45899999999998763

>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=99.16  E-value=1.1e-10  Score=84.54  Aligned_cols=60  Identities=23%  Similarity=0.572  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhc-CCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHH
Q psy9283          75 KKKREKFRELLNET-SEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTA  135 (242)
Q Consensus        75 ~k~r~~F~~LL~e~-~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~ka  135 (242)
                      .+.+++|..||.+. +.|+++++|++|++.|.++|+|++++ ++.+|+.+|++||..+..++
T Consensus         9 rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~-~E~eR~~lFeeYi~~Lkekc   69 (77)
T 2cqn_A            9 KRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDIT-LESERKRIFKDFMHVLEHEC   69 (77)
T ss_dssp             HHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence            45679999999998 57999999999999999999999995 55589999999999998765

>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=99.09  E-value=1.4e-10  Score=84.99  Aligned_cols=59  Identities=19%  Similarity=0.339  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9283          17 SLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKR   78 (242)
Q Consensus        17 ~~reRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k~r   78 (242)
                      ...++++.+..+|.  +|+|+|||+.+++.|++||||.+|+   ..+|+++|++|+.+..+.++
T Consensus        15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~---~~eRK~~F~~y~~~r~~eer   75 (82)
T 2dod_A           15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN---PKERKQVFDQYVKTRAEEER   75 (82)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC---HHHHHHHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC---HHHHHHHHHHHHHHHHHHHH
Confidence            45677778888887  9999999999999999999999985   59999999999998876543

>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1

Probab=99.04  E-value=2.5e-10  Score=78.23  Aligned_cols=52  Identities=25%  Similarity=0.298  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhc--CCCCCCCHHHHHHHH-hhCCCcccCCCCCHHHHHHHHHHHHHH
Q psy9283          20 EREKEVQRTLA--VRNSELTWREAKRQL-RKDHRWDSADLLDRDEKEKLFNEHIEE   72 (242)
Q Consensus        20 eRe~e~~~~~~--~~~~~~sW~ea~~~l-~~DpR~~~~~~L~~~ere~lF~eyi~~   72 (242)
                      |.++.+..+|.  .|+|+|||+++++.| ++||||.+|+. ++.+|+++|++|+.+
T Consensus         4 Eae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d-~~~eRK~~Fe~Y~~~   58 (59)
T 2b7e_A            4 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDD-DPLWKKEMFEKYLSN   58 (59)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCC-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccC-CHHHHHHHHHHHHhc
Confidence            34556666776  999999999999999 89999999982 279999999999864

>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=99.01  E-value=6.2e-10  Score=80.64  Aligned_cols=62  Identities=18%  Similarity=0.358  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhhc-cccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcC
Q psy9283         131 KTSTAKAEFRELLQET-KLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRG  202 (242)
Q Consensus       131 l~~kare~F~elL~E~-~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~  202 (242)
                      ++++++++|..||++. +.|+..|         +|.+|+++|.+||+|+++. .+.+|..||.+||..|+.+.
T Consensus         7 r~rrl~~~F~~mLk~~~p~I~~~s---------~We~vr~~~e~~~~fkav~-~E~eR~~lFeeYi~~Lkekc   69 (77)
T 2cqn_A            7 GMKRKESAFKSMLKQAAPPIELDA---------VWEDIRERFVKEPAFEDIT-LESERKRIFKDFMHVLEHEC   69 (77)
T ss_dssp             SHHHHHHHHHHHHHTCSSCCCTTC---------CHHHHHHHHTTSHHHHTCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCC---------CHHHHHHHHccCHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999 5899999         9999999999999999997 46789999999999998764

>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=98.99  E-value=1.4e-09  Score=79.68  Aligned_cols=56  Identities=25%  Similarity=0.511  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHH
Q psy9283          76 KKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTST  134 (242)
Q Consensus        76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~k  134 (242)
                      ....+|+.||.+.+ |+|+++|+.+.+.|.+||||.+|+  ..+|+++|++|+..+...
T Consensus        18 ea~~~Fk~LL~e~~-V~p~~tWe~~~~~i~~DpRY~aL~--~~eRK~~F~~y~~~r~~e   73 (82)
T 2dod_A           18 ARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLN--PKERKQVFDQYVKTRAEE   73 (82)
T ss_dssp             HHHHHHHHHHHHTT-CCSSSCHHHHHHHHHTCSGGGTSC--HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHcC-cCCCCCHHHHHHHHccCCccccCC--HHHHHHHHHHHHHHHHHH
Confidence            35688999999988 999999999999999999999996  458999999999987653

>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}

Probab=98.83  E-value=3.6e-09  Score=72.40  Aligned_cols=51  Identities=27%  Similarity=0.445  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHH
Q psy9283          77 KREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLK  129 (242)
Q Consensus        77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~  129 (242)
                      .+..|.+||.+.. |.|.++|.-....|.+||||.+|+ +...|+.+|++|++
T Consensus         8 ~k~~F~~LL~e~~-InPys~W~~e~~ki~~DpRY~~l~-s~~~R~e~F~ew~r   58 (59)
T 2juc_A            8 ERNIFFELFDRYK-LDKFSTWSLQSKKIENDPDFYKIR-DDTVRESLFEEWCG   58 (59)
T ss_dssp             SHHHHHHHHHHTT-CCTTTCSHHHHHHHSSSTTGGGSS-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC-CCCCCchhhhcccccCCCCeeecC-ChHHHHHHHHHHhh
Confidence            3578999999988 999999999999999999999996 44589999999985

>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1

Probab=98.81  E-value=1.2e-08  Score=74.53  Aligned_cols=64  Identities=22%  Similarity=0.358  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCc-hHHHHHHHHHHHHHHhcCCCC
Q psy9283         132 TSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIP-EERTQIILTYLDELEKRGPPP  205 (242)
Q Consensus       132 ~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~-~eR~~Lf~dyi~~L~~~~~~~  205 (242)
                      ...|...|+.||-+.          |+.++.+|.+.+++|++||||..++.++ ++++.||.+||+.|.++....
T Consensus        16 r~EA~~~F~aLL~Dl----------Ir~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~r~~   80 (85)
T 2dof_A           16 REEAIQNFKALLSDM----------VRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRES   80 (85)
T ss_dssp             HHHHHHHHHHHHHHH----------TCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHH----------hcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999854          3445569999999999999999887787 778999999999999876543

>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1

Probab=98.77  E-value=1.1e-08  Score=70.03  Aligned_cols=54  Identities=24%  Similarity=0.396  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHH-hcChhhccCCCChHHHHHHHHHHHHH
Q psy9283          76 KKREKFRELLNETSEVTLSSSWKDIRKLI-KEDPRYTKFSSSDRRCEREFKDYLKD  130 (242)
Q Consensus        76 k~r~~F~~LL~e~~~i~~~t~W~ev~~~i-~~Dprf~~l~~~d~~re~lF~eyi~~  130 (242)
                      ...++|++||.+++ |.|+++|..+.+.| .+||+|-+|..+..+|+++|+.|+..
T Consensus         4 Eae~aF~~lL~~~~-V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~   58 (59)
T 2b7e_A            4 EAEKEFITMLKENQ-VDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN   58 (59)
T ss_dssp             HHHHHHHHHHHHTT-CCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC-CCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence            34589999999887 99999999999999 89999999964456899999999864

>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}

Probab=98.44  E-value=3.6e-07  Score=62.49  Aligned_cols=46  Identities=17%  Similarity=0.253  Sum_probs=40.8

Q ss_pred             HHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHH
Q psy9283          24 EVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIE   71 (242)
Q Consensus        24 e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~   71 (242)
                      .+...|.  .|+|.++|+-...+|.+||||.+|+  +.+.|+.+|++||.
T Consensus        11 ~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~--s~~~R~e~F~ew~r   58 (59)
T 2juc_A           11 IFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIR--DDTVRESLFEEWCG   58 (59)
T ss_dssp             HHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSS--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCchhhhcccccCCCCeeecC--ChHHHHHHHHHHhh
Confidence            3445555  8999999999999999999999999  77999999999985

>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.068  Score=36.97  Aligned_cols=57  Identities=23%  Similarity=0.361  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCC--C-CCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHH
Q psy9283          72 ELTKKKREKFRELLNETSEV--T-LSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYL  128 (242)
Q Consensus        72 ~l~~k~r~~F~~LL~e~~~i--~-~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi  128 (242)
                      .+-++++.-|.-||...=..  + -..+|..+.+.|.+-|.|++|+..+.-++++|++|.
T Consensus         8 r~lEqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~   67 (69)
T 2kfd_A            8 RILEQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK   67 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence            34456667788888763321  2 344999999999999999999766667899999873

>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}

Probab=91.75  E-value=0.79  Score=31.63  Aligned_cols=34  Identities=15%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHH
Q psy9283          36 LTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHI   70 (242)
Q Consensus        36 ~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi   70 (242)
                      -+|+.|.+.|++-|-|.++.. ...-++++|+++.
T Consensus        34 e~WE~A~~~I~~~~Ey~~l~~-E~~v~~qif~~F~   67 (69)
T 2kfd_A           34 STWDLASKELGESLEYKALGD-EDNIRRQIFEDFK   67 (69)
T ss_dssp             SSHHHHHHHHTTSTTSGGGTT-SHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHccCHHHHHhhc-cHHHHHHHHHhcC
Confidence            499999999999999999853 6688999999873

>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}

Probab=91.15  E-value=0.4  Score=33.30  Aligned_cols=58  Identities=12%  Similarity=0.266  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHH--HHHHHHHHHHHHh
Q psy9283         133 STAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEER--TQIILTYLDELEK  200 (242)
Q Consensus       133 ~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR--~~Lf~dyi~~L~~  200 (242)
                      ..|.+.|.-|..-. .-.++.         .|..+-..|+..|-|.....+.|..  ..||..||..|+.
T Consensus         9 ~satd~~e~LIr~~-Vtd~~~---------~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~   68 (69)
T 2k85_A            9 ATAKDKYEWLVSRI-VKNHNE---------NWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH   68 (69)
T ss_dssp             THHHHHHHHHHHHH-CSSSCS---------CHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhhHHH---------HhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence            35677788776522 223555         8999999999999998887777555  9999999999975

>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}

Probab=89.75  E-value=0.34  Score=33.65  Aligned_cols=45  Identities=24%  Similarity=0.471  Sum_probs=38.4

Q ss_pred             CCCCCCCHHHHHHHHhhCCCcccCC-CCCHHHHHHHHHHHHHHHHH
Q psy9283          31 VRNSELTWREAKRQLRKDHRWDSAD-LLDRDEKEKLFNEHIEELTK   75 (242)
Q Consensus        31 ~~~~~~sW~ea~~~l~~DpR~~~~~-~L~~~ere~lF~eyi~~l~~   75 (242)
                      +.+...+|..+.+.|...|.|..+- .-...-.+.+|..||..|+.
T Consensus        23 Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~   68 (69)
T 2k85_A           23 VKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH   68 (69)
T ss_dssp             CSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence            8999999999999999999998541 22568889999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d2dofa1	72	a.159.2.1 (A:888-959) Transcription elongation reg	7e-09
d2doda1	69	a.159.2.1 (A:651-719) Transcription elongation reg	1e-05
d2doea1	70	a.159.2.1 (A:784-853) Transcription elongation reg	5e-04
d1uzca_	69	a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T	0.002
d1uzca_	69	a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T	0.002

>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 7e-09
 Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 2/71 (2%)

Query: 11 KARQEASLREREKEVQRTL--AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
          + R++    E  +  +  L   VR+S+++W + +R LRKDHRW+S  LL+R+EKEKLFNE
Sbjct: 2  REREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNE 61

Query: 69 HIEELTKKKRE 79
          HIE LTKKKRE
Sbjct: 62 HIEALTKKKRE 72

>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 11 KARQEASLREREKEVQRTL--AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
          + R    L  R K+ +  L     ++  TW +   ++  D R+    LL+  E++++F++
Sbjct: 2  RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL---LLNPKERKQVFDQ 58

Query: 69 HIEELTKKKRE 79
          +++   +++R 
Sbjct: 59 YVKTRAEEERR 69

>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 11 KARQEASLREREKEVQRTL--AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNE 68
          K   +    + + +    L     +S+  W + K ++  D R+ +  +     +E LF +
Sbjct: 2  KEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKA--VDSSSMREDLFKQ 59

Query: 69 HIEELTKKKR 78
          +IE++ K   
Sbjct: 60 YIEKIAKNLD 69

>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 30 AVRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTK 75
              S  +W +A + +  D R+ +  L    EK++ FN +  +  K
Sbjct: 26 KRVPSNASWEQAMKMIINDPRYSA--LAKLSEKKQAFNAYKVQTEK 69

>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 75  KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK 131
           ++ ++ F+ELL E   V  ++SW+   K+I  DPRY+  +    + ++ F  Y    
Sbjct: 13  EEAKQAFKELLKE-KRVPSNASWEQAMKMIINDPRYSALAKLSEK-KQAFNAYKVQT 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d2dofa1	72	Transcription elongation regulator 1 {Human (Homo	99.39
d2dofa1	72	Transcription elongation regulator 1 {Human (Homo	99.28
d2doea1	70	Transcription elongation regulator 1 {Human (Homo	99.23
d2doda1	69	Transcription elongation regulator 1 {Human (Homo	99.21
d2doda1	69	Transcription elongation regulator 1 {Human (Homo	99.2
d1uzca_	69	Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2doea1	70	Transcription elongation regulator 1 {Human (Homo	99.19
d1uzca_	69	Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	99.02
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	98.96
d2cqna1	64	Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d2cqna1	64	Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}	98.56

>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=97.12  Aligned_cols=59  Identities=59%  Similarity=1.023  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9283          20 EREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKR   78 (242)
Q Consensus        20 eRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k~r   78 (242)
                      +-.+.+..+|.  +++|.++|+++++.|.+||||.+++.|+.++|+++|++||..|.++++
T Consensus        11 ea~~~Fk~LL~e~~~~~~~~W~~~~~~l~~DpRy~a~~~l~~~eRe~lF~eyi~~l~k~~k   71 (72)
T d2dofa1          11 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKR   71 (72)
T ss_dssp             HHHHHHHHHHHHHTCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHhcCCcchhhcCcCCHHHHHHHHHHHHHHHHHHhc
Confidence            34455666666  999999999999999999999999999999999999999999988754

>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.1e-12  Score=89.35  Aligned_cols=63  Identities=25%  Similarity=0.346  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCc-hHHHHHHHHHHHHHHhcCC
Q psy9283         131 KTSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIP-EERTQIILTYLDELEKRGP  203 (242)
Q Consensus       131 l~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~-~eR~~Lf~dyi~~L~~~~~  203 (242)
                      ...+|+++|+.||.|.+ |+..|         +|+++.+.|.+||||.++..++ ++|+.||++||.+|.++..
T Consensus         8 ~~~ea~~~Fk~LL~e~~-~~~~~---------~W~~~~~~l~~DpRy~a~~~l~~~eRe~lF~eyi~~l~k~~k   71 (72)
T d2dofa1           8 KREEAIQNFKALLSDMV-RSSDV---------SWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKR   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHT-CCSSC---------CHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHcC-CCCCC---------CHHHHHHHhcCCcchhhcCcCCHHHHHHHHHHHHHHHHHHhc
Confidence            45689999999999985 77788         8999999999999999998876 8999999999999998753

>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.2e-12  Score=87.56  Aligned_cols=57  Identities=28%  Similarity=0.550  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHH
Q psy9283          75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTS  133 (242)
Q Consensus        75 ~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~  133 (242)
                      .+.+.+|.+||.+.. |++.++|+++++.|.+||||.+|+. ..+|+.+|++||..+.+
T Consensus        10 ~~~~~~F~~LL~e~~-i~~~s~W~~~~~~~~~DpRy~al~~-~~eRe~lF~eyi~~l~k   66 (70)
T d2doea1          10 EKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDS-SSMREDLFKQYIEKIAK   66 (70)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCC-HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC-CCCCCCHHHHHHHhccCHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence            456789999999976 9999999999999999999999964 44799999999998764

>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-11  Score=85.87  Aligned_cols=59  Identities=19%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9283          17 SLREREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELTKKKR   78 (242)
Q Consensus        17 ~~reRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~~k~r   78 (242)
                      .+.++.+.+..+|.  +|+|+++|+++++.|++||||.+|+   .++|+++|++||..+.+++|
T Consensus         8 ~~Ee~~~~Fk~LL~e~~i~~~~~W~~~~~k~~~DpRy~al~---~~eRe~~F~e~~~~~~~eer   68 (69)
T d2doda1           8 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN---PKERKQVFDQYVKTRAEEER   68 (69)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC---HHHHHHHHHHHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhccCcccccCC---HHHHHHHHHHHHHHHHHHhc
Confidence            35566677777777  9999999999999999999999874   58999999999999887654

>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.9e-12  Score=86.62  Aligned_cols=58  Identities=24%  Similarity=0.507  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHH
Q psy9283          75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTA  135 (242)
Q Consensus        75 ~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~ka  135 (242)
                      +..+++|++||.+.. |+|+++|+++++.|.+||||.+|+.  .+|+++|++|+..+..+.
T Consensus        10 Ee~~~~Fk~LL~e~~-i~~~~~W~~~~~k~~~DpRy~al~~--~eRe~~F~e~~~~~~~ee   67 (69)
T d2doda1          10 EARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNP--KERKQVFDQYVKTRAEEE   67 (69)
T ss_dssp             HHHHHHHHHHHHHTT-CCSSSCHHHHHHHHHTCSGGGTSCH--HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHcC-CCCCCCHHHHHHHhccCcccccCCH--HHHHHHHHHHHHHHHHHh
Confidence            455689999999976 9999999999999999999999964  479999999999887653

>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.6e-11  Score=85.58  Aligned_cols=55  Identities=29%  Similarity=0.591  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHH
Q psy9283          75 KKKREKFRELLNETSEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDK  131 (242)
Q Consensus        75 ~k~r~~F~~LL~e~~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l  131 (242)
                      ++.+++|..||.+.. |+++++|+++.+.|.+||||.+|+ +..+|+++|++|+..+
T Consensus        13 eeak~~F~~LL~e~~-v~~~~~W~~~~~~~~~DpRy~ai~-~~~eRe~lF~ey~~~~   67 (69)
T d1uzca_          13 EEAKQAFKELLKEKR-VPSNASWEQAMKMIINDPRYSALA-KLSEKKQAFNAYKVQT   67 (69)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCCHHHHHHHHHTSGGGGGCS-SHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC-CCCCCCHHHHHHHhccCcchhhcC-CHHHHHHHHHHHHHHH
Confidence            567789999999986 999999999999999999999995 4458999999999875

>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Transcription elongation regulator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2e-11  Score=85.25  Aligned_cols=60  Identities=20%  Similarity=0.431  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHhcC
Q psy9283         132 TSTAKAEFRELLQETKLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEKRG  202 (242)
Q Consensus       132 ~~kare~F~elL~E~~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~~~  202 (242)
                      ..+++.+|.+||.+.+ |+..|         +|.++.+.|.+||||.+|.. .++|+.||++||.+|.++.
T Consensus         9 ~~~~~~~F~~LL~e~~-i~~~s---------~W~~~~~~~~~DpRy~al~~-~~eRe~lF~eyi~~l~k~e   68 (70)
T d2doea1           9 GEKIKSDFFELLSNHH-LDSQS---------RWSKVKDKVESDPRYKAVDS-SSMREDLFKQYIEKIAKNL   68 (70)
T ss_dssp             HHHHHHHHHHHHHHTT-CCTTC---------CHHHHHHHHTTSTHHHHCCC-HHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHcC-CCCCC---------CHHHHHHHhccCHHHHhcCC-HHHHHHHHHHHHHHHHHhh
Confidence            4578999999999986 88888         99999999999999999974 4689999999999998764

>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.6e-11  Score=83.16  Aligned_cols=53  Identities=21%  Similarity=0.336  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhc--CCCCCCCHHHHHHHHhhCCCcccCCCCCHHHHHHHHHHHHHHHH
Q psy9283          20 EREKEVQRTLA--VRNSELTWREAKRQLRKDHRWDSADLLDRDEKEKLFNEHIEELT   74 (242)
Q Consensus        20 eRe~e~~~~~~--~~~~~~sW~ea~~~l~~DpR~~~~~~L~~~ere~lF~eyi~~l~   74 (242)
                      +.++.+..+|.  .|+|+++|+.+++.|++||||.+|.  +.++|+++|++||.++.
T Consensus        14 eak~~F~~LL~e~~v~~~~~W~~~~~~~~~DpRy~ai~--~~~eRe~lF~ey~~~~~   68 (69)
T d1uzca_          14 EAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALA--KLSEKKQAFNAYKVQTE   68 (69)
T ss_dssp             HHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCS--SHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHhccCcchhhcC--CHHHHHHHHHHHHHHHh
Confidence            34445666666  9999999999999999999999987  77999999999998763

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.6e-10  Score=76.65  Aligned_cols=52  Identities=25%  Similarity=0.298  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhc--CCCCCCCHHHHHHHH-hhCCCcccCCCCCHHHHHHHHHHHHHH
Q psy9283          20 EREKEVQRTLA--VRNSELTWREAKRQL-RKDHRWDSADLLDRDEKEKLFNEHIEE   72 (242)
Q Consensus        20 eRe~e~~~~~~--~~~~~~sW~ea~~~l-~~DpR~~~~~~L~~~ere~lF~eyi~~   72 (242)
                      |.++.+..+|.  .|+|+|||+++++.| .+||||.+++. ++.+|+++|++|+..
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~-~~~eRK~~Fe~Y~~~   55 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDD-DPLWKKEMFEKYLSN   55 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCC-CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcC-ChHHHHHHHHHHhhc
Confidence            34566777777  999999999999976 68999999964 356999999999864

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=5.9e-10  Score=73.92  Aligned_cols=53  Identities=25%  Similarity=0.350  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCCHHHHHHH-HhcChhhccCCCChHHHHHHHHHHHHH
Q psy9283          77 KREKFRELLNETSEVTLSSSWKDIRKL-IKEDPRYTKFSSSDRRCEREFKDYLKD  130 (242)
Q Consensus        77 ~r~~F~~LL~e~~~i~~~t~W~ev~~~-i~~Dprf~~l~~~d~~re~lF~eyi~~  130 (242)
                      ..++|++||.+.+ |.++++|..+.+. +.+||||.+|.....+|+++|+.|+..
T Consensus         2 a~~aF~~lL~e~~-V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~   55 (56)
T d2b7ea1           2 AEKEFITMLKENQ-VDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN   55 (56)
T ss_dssp             HHHHHHHHHHHTT-CCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC-CCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhc
Confidence            4579999999988 9999999999995 578999999976666799999999864

>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-07  Score=63.60  Aligned_cols=59  Identities=22%  Similarity=0.564  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhc-CCCCCCCCHHHHHHHHhcChhhccCCCChHHHHHHHHHHHHHHHHHH
Q psy9283          76 KKREKFRELLNET-SEVTLSSSWKDIRKLIKEDPRYTKFSSSDRRCEREFKDYLKDKTSTA  135 (242)
Q Consensus        76 k~r~~F~~LL~e~-~~i~~~t~W~ev~~~i~~Dprf~~l~~~d~~re~lF~eyi~~l~~ka  135 (242)
                      +.-.+|+.||... +.|.++++|.+|+..|.+||.|.++. .+.+|..+|.+|+..+...+
T Consensus         3 r~E~aFknmLk~~~Ppi~~~s~WeevR~r~ene~AF~ait-lEsERiRiFkef~~~le~~C   62 (64)
T d2cqna1           3 RKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDIT-LESERKRIFKDFMHVLEHEC   62 (64)
T ss_dssp             HHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCCcCcHHHHHHHHhccHHHHHhH-HHHHHHHHHHHHHHHHHHHh
Confidence            3457999999764 35899999999999999999999995 55689999999999887643

>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.5e-08  Score=64.02  Aligned_cols=58  Identities=19%  Similarity=0.401  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhhc-cccccccccccccccccHHHHHHHHhcChhhhhccCCchHHHHHHHHHHHHHHh
Q psy9283         133 STAKAEFRELLQET-KLISHKSLGLLHENENYLSEIEEILRNDKRFLSLEHIPEERTQIILTYLDELEK  200 (242)
Q Consensus       133 ~kare~F~elL~E~-~~i~~~t~~~i~e~~~~w~ei~~~L~~D~Ry~~l~~~~~eR~~Lf~dyi~~L~~  200 (242)
                      ++...+|+.||+.. +.|.+.|         +|.+|++.+.+|+.|.++. +.++|..+|.|||..|+.
T Consensus         2 rr~E~aFknmLk~~~Ppi~~~s---------~WeevR~r~ene~AF~ait-lEsERiRiFkef~~~le~   60 (64)
T d2cqna1           2 KRKESAFKSMLKQAAPPIELDA---------VWEDIRERFVKEPAFEDIT-LESERKRIFKDFMHVLEH   60 (64)
T ss_dssp             HHHHHHHHHHHHTCSSCCCTTC---------CHHHHHHHHTTSHHHHTCC-CHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCCCCcC---------cHHHHHHHHhccHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence            45668999999987 5789998         9999999999999999997 688999999999999974