Diaphorina citri psyllid: psy9904


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
MNLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
cccccHHHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHcc
*NLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHK**********************************LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
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MNLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Transportin-1 Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.confidentB9FDR3
Transportin-1 Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A (By similarity). In vitro, mediates nuclear import of SRP19 (By similarity) and H2A, H2B, H3 and H4 histones.confidentQ8BFY9
Transportin-1 Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones, and SRP19. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.confidentQ92973

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0008565 [MF]protein transporter activityprobableGO:0005215, GO:0022892, GO:0003674
GO:0016071 [BP]mRNA metabolic processprobableGO:0016070, GO:0006139, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0034641, GO:0006807, GO:0008150, GO:0008152, GO:1901360, GO:0046483
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0005643 [CC]nuclear poreprobableGO:0005635, GO:0031975, GO:0043229, GO:0043227, GO:0043226, GO:0031224, GO:0044446, GO:0046930, GO:0016021, GO:0016020, GO:0031967, GO:0012505, GO:0043234, GO:0032991, GO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044428, GO:0044424, GO:0044425, GO:0005634, GO:0044422
GO:0008139 [MF]nuclear localization sequence bindingprobableGO:0033218, GO:0003674, GO:0042277, GO:0005048, GO:0005488
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0000060 [BP]protein import into nucleus, translocationprobableGO:0034504, GO:0051169, GO:0008104, GO:0044699, GO:0070727, GO:0006886, GO:0071702, GO:0051641, GO:0034613, GO:0017038, GO:0006810, GO:0006606, GO:0006913, GO:0006605, GO:0045184, GO:0015031, GO:0044765, GO:0051170, GO:0051649, GO:0044744, GO:0051234, GO:0051179, GO:0016482, GO:0033036, GO:0046907, GO:0044763, GO:0033365, GO:0008150, GO:0009987
GO:0022008 [BP]neurogenesisprobableGO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0006911 [BP]phagocytosis, engulfmentprobableGO:0009987, GO:0006909, GO:0016192, GO:0016044, GO:0071840, GO:0006810, GO:0010324, GO:0008150, GO:0061024, GO:0044765, GO:0044763, GO:0016043, GO:0006897, GO:0051234, GO:0051179, GO:0044699
GO:0031965 [CC]nuclear membraneprobableGO:0005575, GO:0005635, GO:0031090, GO:0005634, GO:0016020, GO:0044464, GO:0031967, GO:0031975, GO:0044446, GO:0043229, GO:0044428, GO:0012505, GO:0044424, GO:0005623, GO:0005622, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0010467 [BP]gene expressionprobableGO:0071704, GO:0008150, GO:0008152, GO:0043170

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 4FDD, chain A
Confidence level:very confident
Coverage over the Query: 71-189,208-592
View the alignment between query and template
View the model in PyMOL
Template: 2QMR, chain A
Confidence level:very confident
Coverage over the Query: 64-82,95-109,132-140,164-592
View the alignment between query and template
View the model in PyMOL