Psyllid ID: psy9904

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
MNLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
cccccHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHcc
cccccHHHHHHHcccHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHccc
MNLSAEIDIILlkgdveedemipdrdedirprfhkskrsvkaegenmnmgenggeeveeedddldddsslsdwnlRKCSAAALDVLANVFREELLPVLLPILKETLfhhdweikesGILALGAIAEgcmngmvphlnELVPFLITCLSDKKALVRAITCWtlsryshwvvsqphdsylKPLMTEMLGcmngmvphlnELVPFLITCLSDKKALVRAITCWtlsryshwvvsqphdsylkplMTEHKNLLILYDAIGTLAdsvghhlnkpeyisllmppliqkwnilkdedkdlfplLECLSSVATALqagflpycepvYRRCVSLIEQTLNQHmansqnpeqfdapdkDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCmqdpmpevrqSSFALLGDLTKAcfshvhpcisdfmpilgqnlnpdlisvCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIinrpntpktlleNTAITIgrlgyvcphdvaplcsslrnirdneekdsAFRGMCAMItvnpggvvQEFIFFCdavaswstpkEDLKEMFHKILHGFrtqvgdenwqRFADQFPDQLRDRLSAMYGV
MNLSAEIDIIllkgdveedemipdrdedirprfhkskrsvkaegenmnmgenggeeveeedDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIiiinrpntpktLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
MNLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAegenmnmgenggeeveeedddldddsslsdWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
******IDIILL************************************************************WNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLN****************KDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDN**KDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQ***************
*NLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHK******************GEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWN******KDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
MNLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMG*******************LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
******IDIILLKGDVEE*E**PDRD**IR***************************************LSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
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MNLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAPLCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query592 2.2.26 [Sep-21-2011]
Q8BFY9898 Transportin-1 OS=Mus musc yes N/A 0.881 0.581 0.582 0.0
Q92973898 Transportin-1 OS=Homo sap yes N/A 0.881 0.581 0.580 0.0
Q3SYU7898 Transportin-1 OS=Bos taur yes N/A 0.881 0.581 0.580 0.0
Q99LG2887 Transportin-2 OS=Mus musc no N/A 0.685 0.457 0.689 0.0
O14787897 Transportin-2 OS=Homo sap no N/A 0.685 0.452 0.672 0.0
B9FDR3891 Transportin-1 OS=Oryza sa yes N/A 0.920 0.611 0.412 1e-123
B8ARW2890 Transportin-1 OS=Oryza sa N/A N/A 0.920 0.612 0.411 1e-122
O14089910 Importin subunit beta-2 O yes N/A 0.945 0.615 0.386 1e-108
Q8H0U4891 Transportin-1 OS=Arabidop yes N/A 0.668 0.444 0.385 1e-87
P38217918 Importin subunit beta-2 O yes N/A 0.839 0.541 0.347 4e-70
>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2 Back     alignment and function desciption
 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/646 (58%), Positives = 449/646 (69%), Gaps = 124/646 (19%)

Query: 5   AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDL 64
           ++IDIILLKGDVEEDE IPD ++DIRPRFH+S+   +   E+    E+  ++  ++D   
Sbjct: 319 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHEEDGIEEEDDDDDEIDDD--- 375

Query: 65  DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
               ++SDWNLRKCSAAA            L VL  + ++ L  H               
Sbjct: 376 ---DTISDWNLRKCSAAA------------LDVLANVYRDELLPH--------------- 405

Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
                  ++P L EL+                        +  WVV +     L  +   
Sbjct: 406 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 434

Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
             GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 435 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 492

Query: 245 --------------------------------------------------HKNLLILYDA 254
                                                             HKNLLILYDA
Sbjct: 493 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 552

Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
           IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 553 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 612

Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
           CEPVY+RCV+L+++TL Q M N+  PEQ++APDKDFMIVALDLLSGLAEGL  +I+ LV+
Sbjct: 613 CEPVYQRCVNLVQKTLAQAMLNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 672

Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
            SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 673 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 732

Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
           CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP 
Sbjct: 733 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 792

Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
           +VAP+        C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW  
Sbjct: 793 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 852

Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
           PK+DL++MF KILHGF+ QVGDENW+RF+DQFP  L++RL+A YGV
Sbjct: 853 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A (By similarity). In vitro, mediates nuclear import of SRP19 (By similarity) and H2A, H2B, H3 and H4 histones.
Mus musculus (taxid: 10090)
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2 Back     alignment and function description
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2 Back     alignment and function description
>sp|Q99LG2|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1 Back     alignment and function description
>sp|O14787|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3 Back     alignment and function description
>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2 Back     alignment and function description
>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1 Back     alignment and function description
>sp|O14089|IMB2_SCHPO Importin subunit beta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap104 PE=3 SV=1 Back     alignment and function description
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1 Back     alignment and function description
>sp|P38217|IMB2_YEAST Importin subunit beta-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP104 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
17137558 893 transportin, isoform A [Drosophila melan 0.974 0.646 0.679 0.0
20151549642 LD12333p [Drosophila melanogaster] 0.974 0.898 0.679 0.0
296194370 928 PREDICTED: LOW QUALITY PROTEIN: transpor 0.978 0.623 0.659 0.0
27819795 893 RE59670p [Drosophila melanogaster] 0.974 0.646 0.677 0.0
195492251 893 GE21552 [Drosophila yakuba] gi|194180012 0.974 0.646 0.676 0.0
194867579 893 GG15334 [Drosophila erecta] gi|190653884 0.974 0.646 0.676 0.0
195337893 893 GM14771 [Drosophila sechellia] gi|194128 0.974 0.646 0.677 0.0
3293342 893 transportin [Drosophila melanogaster] 0.974 0.646 0.672 0.0
340714413 933 PREDICTED: transportin-1-like [Bombus te 0.891 0.565 0.637 0.0
350399125 933 PREDICTED: transportin-1-like [Bombus im 0.891 0.565 0.637 0.0
>gi|17137558|ref|NP_477368.1| transportin, isoform A [Drosophila melanogaster] gi|24659257|ref|NP_729154.1| transportin, isoform B [Drosophila melanogaster] gi|24659264|ref|NP_729155.1| transportin, isoform C [Drosophila melanogaster] gi|442630550|ref|NP_001261472.1| transportin, isoform D [Drosophila melanogaster] gi|7295356|gb|AAF50674.1| transportin, isoform A [Drosophila melanogaster] gi|23094085|gb|AAN12089.1| transportin, isoform B [Drosophila melanogaster] gi|23094086|gb|AAN12090.1| transportin, isoform C [Drosophila melanogaster] gi|440215369|gb|AGB94167.1| transportin, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/596 (67%), Positives = 483/596 (81%), Gaps = 19/596 (3%)

Query: 5   AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDL 64
           +E+DIILLKG+VEED+M+PDR+EDIRPRFHKS+       +    G  G ++ +E +D +
Sbjct: 309 SEVDIILLKGNVEEDDMVPDREEDIRPRFHKSRAHTIRSTQEGGAGATGDDDDDEFEDGM 368

Query: 65  DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
           DDDSSLS+WNLRKCSAAALDVLANVFRE+ LPV+LPILKETLFH +W IKESG+LALGAI
Sbjct: 369 DDDSSLSEWNLRKCSAAALDVLANVFREDCLPVVLPILKETLFHQEWVIKESGVLALGAI 428

Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
           AEGCM GM+ HL EL+P+LI+CLSDKKALVR+ITCWTLSRY++WVV+QPHD YLKPLM E
Sbjct: 429 AEGCMQGMIQHLPELIPYLISCLSDKKALVRSITCWTLSRYANWVVNQPHDQYLKPLMEE 488

Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
           +L  +      + E        L ++        C  L  Y  +++     ++ K    +
Sbjct: 489 LLKRILDSNKRVQEAACSAFATLEEE-------ACTELVPYLEYILKTLVFAFSK---YQ 538

Query: 245 HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVA 304
           HKNLLILYDA+GTLADSVGHHLNKP+YI +LMPPLI KWN+LKD+DKDLFPLLECLSS+A
Sbjct: 539 HKNLLILYDAVGTLADSVGHHLNKPQYIDILMPPLIDKWNLLKDDDKDLFPLLECLSSIA 598

Query: 305 TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEG 364
           TALQ+GFLPYC+PVYRRC+SLIEQT+NQ M   QN + +D PDK+ MIVALDLLSGLAEG
Sbjct: 599 TALQSGFLPYCDPVYRRCISLIEQTINQEMLCKQN-QTYDHPDKERMIVALDLLSGLAEG 657

Query: 365 LDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILG 424
           LD HI++LV+NSNIMHLLYQCMQD +PEVRQSSFALLGDLTKACF HVHP ++DF PILG
Sbjct: 658 LDRHIETLVANSNIMHLLYQCMQDVLPEVRQSSFALLGDLTKACFPHVHPFMADFFPILG 717

Query: 425 QNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAIT 484
           QNLNPD ISVCNNATWAIGEI +KLGE+ ++Y+ +V++ L IIINRPNTPKTLLENTAIT
Sbjct: 718 QNLNPDFISVCNNATWAIGEICMKLGEETKQYIRLVLSDLFIIINRPNTPKTLLENTAIT 777

Query: 485 IGRLGYVCPHDVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIF 536
           IGRLGYVCP +VAP         C+SLR+IRDN+EKDSAFRGMC MITVNP GVV +FIF
Sbjct: 778 IGRLGYVCPVEVAPYLPEFVRQWCTSLRHIRDNDEKDSAFRGMCHMITVNPAGVVADFIF 837

Query: 537 FCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
           FCDA+ASW  P EDL +M  KILHGF+TQVG+ENW+RF +QFP  L +RL+ MY +
Sbjct: 838 FCDAIASWVNPPEDLHQMIQKILHGFKTQVGEENWRRFVEQFPPTLAERLTTMYNI 893

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|20151549|gb|AAM11134.1| LD12333p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|296194370|ref|XP_002806672.1| PREDICTED: LOW QUALITY PROTEIN: transportin-1 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|27819795|gb|AAO24946.1| RE59670p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195492251|ref|XP_002093911.1| GE21552 [Drosophila yakuba] gi|194180012|gb|EDW93623.1| GE21552 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194867579|ref|XP_001972101.1| GG15334 [Drosophila erecta] gi|190653884|gb|EDV51127.1| GG15334 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195337893|ref|XP_002035560.1| GM14771 [Drosophila sechellia] gi|194128653|gb|EDW50696.1| GM14771 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|3293342|gb|AAC25708.1| transportin [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|340714413|ref|XP_003395723.1| PREDICTED: transportin-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350399125|ref|XP_003485429.1| PREDICTED: transportin-1-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query592
UNIPROTKB|F1NSW3896 TNPO1 "Uncharacterized protein 0.809 0.534 0.650 6.2e-216
UNIPROTKB|F1PZL7857 TNPO1 "Uncharacterized protein 0.969 0.669 0.672 5.9e-215
MGI|MGI:2681523898 Tnpo1 "transportin 1" [Mus mus 0.966 0.636 0.672 1.2e-214
UNIPROTKB|F1LQP9897 Tnpo1 "Protein Tnpo1" [Rattus 0.966 0.637 0.672 1.2e-214
UNIPROTKB|Q3SYU7898 TNPO1 "Transportin-1" [Bos tau 0.966 0.636 0.671 2.6e-214
UNIPROTKB|Q92973898 TNPO1 "Transportin-1" [Homo sa 0.966 0.636 0.671 2.6e-214
UNIPROTKB|I3LM93893 TNPO1 "Uncharacterized protein 0.966 0.640 0.671 2.6e-214
UNIPROTKB|E1BX26890 TNPO1 "Uncharacterized protein 0.966 0.642 0.671 7.8e-213
FB|FBgn0024921893 Trn "Transportin" [Drosophila 0.974 0.646 0.654 1.1e-211
ZFIN|ZDB-GENE-040822-16889 tnpo2 "transportin 2 (importin 0.967 0.644 0.662 9.2e-210
UNIPROTKB|F1NSW3 TNPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1651 (586.2 bits), Expect = 6.2e-216, Sum P(2) = 6.2e-216
 Identities = 328/504 (65%), Positives = 386/504 (76%)

Query:     5 AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAXXXXXXXXXXXXXXXXXXXXXX 64
             +EIDIILLKGDVEEDE IPD ++DIRPRFH+S R+V                        
Sbjct:   308 SEIDIILLKGDVEEDEAIPDSEQDIRPRFHRS-RTV-----AQKHEEDGIEDRDDDDDEI 361

Query:    65 XXXXXXXXWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
                     WNLRKCSAAALDVLANVFR+ELLP +LP+LKE LFH +W +KESGIL LGAI
Sbjct:   362 DDDDAISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPEWVVKESGILVLGAI 421

Query:   125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
             AEGCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct:   422 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 481

Query:   185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
             +L  +      + E        L ++        C  L  Y  +++     ++ K    +
Sbjct:   482 LLQRILDSNKRVQEAACSAFATLEEE-------ACTELVPYLAYILDTLVFAFSK---YQ 531

Query:   245 HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVA 304
             HKNLLILYDAIGTLADSVGHHLNKPEYI +LMPPLI KWN+LKDEDKDLFPLLECLSSVA
Sbjct:   532 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIHKWNMLKDEDKDLFPLLECLSSVA 591

Query:   305 TALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEG 364
             TALQ+GFLPYCEPVY+RCV+L+++TL Q M ++  P+Q++APDKDFMIVALDLLSGLAEG
Sbjct:   592 TALQSGFLPYCEPVYQRCVNLVQKTLAQAMLHNAQPDQYEAPDKDFMIVALDLLSGLAEG 651

Query:   365 LDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILG 424
             L  +I+ LV+ SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG
Sbjct:   652 LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG 711

Query:   425 QNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTA-- 482
              NLNP+ ISVCNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENT   
Sbjct:   712 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTGTQ 771

Query:   483 -------ITIGRLGYVCPHDVAPL 499
                    ITIGRLGYVCP +VAP+
Sbjct:   772 KLKHLCTITIGRLGYVCPQEVAPM 795
GO:0005643 "nuclear pore" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
UNIPROTKB|F1PZL7 TNPO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2681523 Tnpo1 "transportin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQP9 Tnpo1 "Protein Tnpo1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYU7 TNPO1 "Transportin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q92973 TNPO1 "Transportin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM93 TNPO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX26 TNPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0024921 Trn "Transportin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040822-16 tnpo2 "transportin 2 (importin 3, karyopherin beta 2b)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BFY9TNPO1_MOUSENo assigned EC number0.58200.88170.5812yesN/A
O14089IMB2_SCHPONo assigned EC number0.38620.94590.6153yesN/A
Q3SYU7TNPO1_BOVINNo assigned EC number0.58040.88170.5812yesN/A
B9FDR3TNPO1_ORYSJNo assigned EC number0.41290.92060.6116yesN/A
Q92973TNPO1_HUMANNo assigned EC number0.58040.88170.5812yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 1e-13
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 1e-09
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-08
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 4e-07
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 5e-05
pfam1364688 pfam13646, HEAT_2, HEAT repeats 5e-04
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information 
 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query: 111 WEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRY 165
           WE++E+  LALGA+A G    + P + EL+P L+  L D    VR    W L R 
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 592
KOG2023|consensus885 100.0
KOG2171|consensus1075 100.0
KOG2023|consensus885 100.0
KOG1241|consensus859 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG2171|consensus 1075 99.96
KOG0213|consensus 1172 99.92
KOG1241|consensus859 99.92
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.84
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.83
KOG1824|consensus 1233 99.8
KOG0212|consensus 675 99.71
KOG1824|consensus 1233 99.7
KOG1991|consensus1010 99.59
KOG0166|consensus514 99.57
KOG0213|consensus 1172 99.56
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.52
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.52
KOG0915|consensus 1702 99.51
KOG0166|consensus514 99.5
KOG1242|consensus569 99.49
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.46
KOG0915|consensus 1702 99.44
KOG1242|consensus569 99.43
KOG0212|consensus 675 99.43
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.32
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.3
KOG0211|consensus759 99.3
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.23
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.21
PRK09687280 putative lyase; Provisional 99.21
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.18
PTZ00429 746 beta-adaptin; Provisional 99.17
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.14
PRK09687280 putative lyase; Provisional 99.11
COG5656 970 SXM1 Importin, protein involved in nuclear import 99.06
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 99.05
KOG2022|consensus982 99.04
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.04
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.03
PTZ00429 746 beta-adaptin; Provisional 98.9
KOG1993|consensus978 98.9
KOG1059|consensus 877 98.89
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.89
KOG1060|consensus 968 98.88
KOG1992|consensus960 98.85
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.84
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.83
KOG0211|consensus759 98.79
KOG1240|consensus 1431 98.75
KOG1062|consensus 866 98.73
KOG1943|consensus 1133 98.71
KOG4224|consensus550 98.71
KOG1060|consensus 968 98.67
KOG2274|consensus 1005 98.64
KOG1991|consensus 1010 98.61
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.55
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.5
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.49
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.46
KOG1240|consensus 1431 98.45
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.36
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.34
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.25
KOG2022|consensus982 98.23
KOG1061|consensus 734 98.22
KOG4224|consensus550 98.21
KOG1248|consensus 1176 98.2
COG5656970 SXM1 Importin, protein involved in nuclear import 98.14
KOG1020|consensus 1692 98.1
KOG1059|consensus 877 98.08
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 98.08
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.96
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.95
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.94
KOG0891|consensus 2341 97.94
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.91
KOG1993|consensus 978 97.91
KOG2259|consensus 823 97.91
KOG0891|consensus 2341 97.91
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.91
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.87
KOG1248|consensus 1176 97.83
KOG2274|consensus 1005 97.79
KOG1967|consensus1030 97.78
KOG1077|consensus 938 97.77
KOG1820|consensus 815 97.77
KOG2956|consensus516 97.76
KOG2032|consensus533 97.72
KOG1943|consensus 1133 97.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 97.68
KOG4413|consensus524 97.67
KOG1020|consensus 1692 97.65
KOG2021|consensus980 97.61
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.58
KOG0168|consensus 1051 97.57
KOG2259|consensus 823 97.56
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.56
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.52
PF05804708 KAP: Kinesin-associated protein (KAP) 97.5
KOG4653|consensus982 97.45
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.44
KOG1058|consensus 948 97.44
KOG1062|consensus 866 97.4
KOG1967|consensus1030 97.38
KOG0413|consensus 1529 97.37
KOG2956|consensus516 97.34
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.33
KOG2032|consensus533 97.28
KOG1078|consensus 865 97.27
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.26
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.25
KOG4524|consensus1014 97.17
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.12
KOG1077|consensus 938 97.11
PF05804708 KAP: Kinesin-associated protein (KAP) 97.1
KOG1061|consensus 734 96.96
KOG1992|consensus 960 96.94
KOG2160|consensus342 96.77
KOG4653|consensus982 96.72
PF14500262 MMS19_N: Dos2-interacting transcription regulator 96.71
TIGR02270410 conserved hypothetical protein. Members are found 96.69
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.63
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.62
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 96.62
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.58
KOG1820|consensus815 96.54
KOG0414|consensus 1251 96.51
KOG0168|consensus 1051 96.49
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 96.44
PF05004309 IFRD: Interferon-related developmental regulator ( 96.43
KOG4535|consensus728 96.21
TIGR02270410 conserved hypothetical protein. Members are found 96.17
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.14
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.14
KOG2933|consensus334 96.06
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.06
KOG1837|consensus1621 96.05
KOG0946|consensus 970 96.02
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 95.99
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.98
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 95.9
PF05004309 IFRD: Interferon-related developmental regulator ( 95.84
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.82
KOG4524|consensus1014 95.8
KOG1058|consensus 948 95.73
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.54
KOG2933|consensus334 95.44
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.38
KOG2062|consensus929 95.34
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 95.27
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 95.24
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 95.23
KOG0392|consensus 1549 95.19
COG51011053 CRM1 Importin beta-related nuclear transport recep 95.16
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.0
KOG1078|consensus 865 95.0
KOG4535|consensus728 94.94
KOG0414|consensus 1251 94.94
KOG2081|consensus559 94.83
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 94.81
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 94.78
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 94.72
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.69
KOG0392|consensus 1549 94.62
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 94.47
KOG1851|consensus1710 94.38
KOG2062|consensus929 94.31
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.24
smart00638574 LPD_N Lipoprotein N-terminal Domain. 94.22
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.21
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 94.15
KOG2160|consensus342 94.14
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.1
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.06
KOG0567|consensus289 94.04
COG50981128 Chromosome condensation complex Condensin, subunit 94.01
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.93
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 93.8
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 93.65
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 93.56
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 93.56
KOG1293|consensus678 93.33
PF13251182 DUF4042: Domain of unknown function (DUF4042) 93.18
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 93.13
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 93.07
KOG2005|consensus878 92.96
COG5116926 RPN2 26S proteasome regulatory complex component [ 92.87
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 92.79
KOG1517|consensus 1387 92.65
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 92.19
KOG0567|consensus289 92.18
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 92.12
KOG2137|consensus700 92.1
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 92.1
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 92.05
KOG2149|consensus 393 91.99
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 91.87
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 91.76
COG5110881 RPN1 26S proteasome regulatory complex component [ 91.71
KOG1837|consensus1621 91.29
KOG1822|consensus 2067 91.14
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 91.03
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 90.99
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 90.75
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 90.7
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.62
KOG4413|consensus 524 90.51
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 90.17
KOG3961|consensus262 90.07
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 90.05
PF09026101 CENP-B_dimeris: Centromere protein B dimerisation 89.55
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 89.37
cd03561133 VHS VHS domain family; The VHS domain is present i 89.16
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 88.94
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 88.91
KOG2025|consensus 892 88.83
KOG2025|consensus 892 88.79
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 88.67
smart0056730 EZ_HEAT E-Z type HEAT repeats. Present in subunits 88.65
KOG2081|consensus559 88.47
cd03561133 VHS VHS domain family; The VHS domain is present i 88.3
KOG2021|consensus 980 88.08
KOG0889|consensus 3550 88.03
KOG2549|consensus576 88.01
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 87.73
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 87.6
COG5098 1128 Chromosome condensation complex Condensin, subunit 87.57
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 87.45
cd06561197 AlkD_like A new structural DNA glycosylase. This d 87.28
KOG2149|consensus393 86.93
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 86.83
KOG2549|consensus 576 86.49
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 86.13
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 86.03
KOG1243|consensus 690 85.93
KOG1243|consensus690 85.88
KOG2199|consensus462 85.71
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 85.4
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 85.36
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 85.16
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 84.69
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 84.42
KOG1517|consensus 1387 84.38
PF0313027 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP 84.31
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 84.26
KOG1293|consensus678 83.81
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 83.67
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 83.62
KOG1822|consensus 2067 83.61
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 83.49
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 82.88
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 82.87
smart00638574 LPD_N Lipoprotein N-terminal Domain. 82.53
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 82.53
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 82.38
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 82.11
KOG2137|consensus700 81.91
COG4912222 Predicted DNA alkylation repair enzyme [DNA replic 81.74
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 81.57
PF05536543 Neurochondrin: Neurochondrin 80.95
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 80.74
KOG2153|consensus704 80.72
KOG4199|consensus461 80.54
cd06561197 AlkD_like A new structural DNA glycosylase. This d 80.19
>KOG2023|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.7e-122  Score=933.42  Aligned_cols=553  Identities=65%  Similarity=1.138  Sum_probs=523.1

Q ss_pred             CCcHHHHHHhcCCcccCCCCCCCCCCCCcccccccccccccccccCCCCCCCCCCCCccCCCCCCCccccchHHHHHHHH
Q psy9904           3 LSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAAA   82 (592)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~Rk~aa~~   82 (592)
                      +|||+|+.+|+ ++|||+.+|||||||||||||+|.++.+..        . +++||+||++||||..++||+|||+|++
T Consensus       309 ~Ysd~D~~LL~-~~eeD~~vpDreeDIkPRfhksk~~~~~~~--------~-~~eDdddDe~DDdD~~~dWNLRkCSAAa  378 (885)
T KOG2023|consen  309 VYSDDDIILLK-NNEEDESVPDREEDIKPRFHKSKEHGNGED--------A-DDEDDDDDEDDDDDAFSDWNLRKCSAAA  378 (885)
T ss_pred             ccccccHHHhc-CccccccCCchhhhccchhhhchhccCccc--------c-ccccccccccccccccccccHhhccHHH
Confidence            79999999999 559999999999999999999999877521        1 2223333444577899999999999999


Q ss_pred             HHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHHH
Q psy9904          83 LDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTL  162 (592)
Q Consensus        83 L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~aL  162 (592)
                      ||+||+.+|++++|.++|++++.+.+++|.+|||+++|||+|||||++++.||++.++|+++++|.|.+|.||++|||||
T Consensus       379 LDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL  458 (885)
T KOG2023|consen  379 LDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL  458 (885)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccchHHHHHHHHccc---cCCcc-----c---h-----hhhHHHHHHhcCchhhHHHHHHHhhhhhhh
Q psy9904         163 SRYSHWVVSQPHDSYLKPLMTEMLGCM---NGMVP-----H---L-----NELVPFLITCLSDKKALVRAITCWTLSRYS  226 (592)
Q Consensus       163 ~~l~~~~~~~~~~~~l~~ll~~Ll~~l---~~~vq-----~---l-----~~l~p~l~~il~d~~~~vr~~a~~~L~~~a  226 (592)
                      +||+.|+..+...+||.|+|..|++++   ||+||     +   |     ++|+||+..||   +++++++     ++| 
T Consensus       459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL---~~l~~af-----~kY-  529 (885)
T KOG2023|consen  459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYIL---DQLVFAF-----GKY-  529 (885)
T ss_pred             hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHH---HHHHHHH-----HHH-
Confidence            999999988777899999999999999   88998     1   2     79999999999   9999999     999 


Q ss_pred             hhhccCCcccchHHHHHhhhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHH
Q psy9904         227 HWVVSQPHDSYLKPLMTEHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATA  306 (592)
Q Consensus       227 ~~~~~~~~~~y~~~~~~~~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~  306 (592)
                                       |.||++++|||||++|+++|..+.+|.|++.+||+|+++|+.++|+++++++++||+++|+.+
T Consensus       530 -----------------Q~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~A  592 (885)
T KOG2023|consen  530 -----------------QKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASA  592 (885)
T ss_pred             -----------------hhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence                             999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHh
Q psy9904         307 LQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCM  386 (592)
Q Consensus       307 ~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l  386 (592)
                      +|.+|+||++++|+||+.+++++++.... .+++..++.+|++|+++++|+++++++++|.++.|+++++.++.++++|+
T Consensus       593 L~~gF~P~~~~Vy~Rc~~il~~t~q~~~~-~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~  671 (885)
T KOG2023|consen  593 LGVGFLPYAQPVYQRCFRILQKTLQLLAK-VQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL  671 (885)
T ss_pred             HhccccccCHHHHHHHHHHHHHHHHHHHh-ccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh
Confidence            99999999999999999999999665443 34455788899999999999999999999999999999899999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy9904         387 QDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLII  466 (592)
Q Consensus       387 ~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~  466 (592)
                      +|+-++|||++|+++|+++++|.+++.|++..++|.+..++++++.++++||+|++|+|+.++|.++++|+..++..|+.
T Consensus       672 ~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~  751 (885)
T KOG2023|consen  672 QDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLIT  751 (885)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--------HhhhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHHHHH
Q psy9904         467 IINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFC  538 (592)
Q Consensus       467 ~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--------~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~~  538 (592)
                      +++.+..+.++.+|.++||||+|..||+.++|        ||..|++++|++||++||+|||.|+..||.++...|+.||
T Consensus       752 iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c  831 (885)
T KOG2023|consen  752 IINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFIC  831 (885)
T ss_pred             HhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHH
Confidence            99999889999999999999999999998776        9999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhCC
Q psy9904         539 DAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV  592 (592)
Q Consensus       539 ~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  592 (592)
                      .+|++|.+|.++++.+|.++|+|||+++|+.+|++|..+|||..+++|++.|||
T Consensus       832 ~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~a~y~v  885 (885)
T KOG2023|consen  832 DAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQAFYGV  885 (885)
T ss_pred             HHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999997

>KOG2171|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG1991|consensus Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0915|consensus Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0915|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0211|consensus Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2022|consensus Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1993|consensus Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>KOG1992|consensus Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0211|consensus Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>KOG1943|consensus Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>KOG1991|consensus Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2022|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0891|consensus Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1993|consensus Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>KOG0891|consensus Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>KOG1967|consensus Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>KOG1820|consensus Back     alignment and domain information
>KOG2956|consensus Back     alignment and domain information
>KOG2032|consensus Back     alignment and domain information
>KOG1943|consensus Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG4413|consensus Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>KOG2021|consensus Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0168|consensus Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG4653|consensus Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>KOG1967|consensus Back     alignment and domain information
>KOG0413|consensus Back     alignment and domain information
>KOG2956|consensus Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2032|consensus Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG4524|consensus Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG1992|consensus Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>KOG4653|consensus Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1820|consensus Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>KOG0168|consensus Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4535|consensus Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2933|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1837|consensus Back     alignment and domain information
>KOG0946|consensus Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG4524|consensus Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2933|consensus Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>KOG4535|consensus Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>KOG2081|consensus Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG1851|consensus Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG0567|consensus Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1293|consensus Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2005|consensus Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1517|consensus Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0567|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2137|consensus Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG2149|consensus Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1837|consensus Back     alignment and domain information
>KOG1822|consensus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG4413|consensus Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG3961|consensus Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>smart00567 EZ_HEAT E-Z type HEAT repeats Back     alignment and domain information
>KOG2081|consensus Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2021|consensus Back     alignment and domain information
>KOG0889|consensus Back     alignment and domain information
>KOG2549|consensus Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>KOG2149|consensus Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG2549|consensus Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG1243|consensus Back     alignment and domain information
>KOG1243|consensus Back     alignment and domain information
>KOG2199|consensus Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1517|consensus Back     alignment and domain information
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>KOG1293|consensus Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG1822|consensus Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2137|consensus Back     alignment and domain information
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2153|consensus Back     alignment and domain information
>KOG4199|consensus Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 0.0
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 0.0
1qbk_B890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 0.0
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 0.0
1ukl_A876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 6e-13
2p8q_A876 Crystal Structure Of Human Importin Beta Bound To T 6e-12
2qna_A762 Crystal Structure Of Human Importin-Beta (127-876) 6e-12
1qgk_A876 Structure Of Importin Beta Bound To The Ibb Domain 7e-12
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 1e-08
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 1e-08
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 2e-08
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 1e-07
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure 
Iteration: 1

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/646 (57%), Positives = 436/646 (67%), Gaps = 124/646 (19%)
Query: 5   AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAXXXXXXXXXXXXXXXXXXXXXX 64
           ++IDIILLKGDVEEDE IPD ++DIRPRFH+S+   +                       
Sbjct: 311 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 370
Query: 65  XXXXXXXXWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
                   WNLRKCSAAA            L VL  + ++ L  H               
Sbjct: 371 SD------WNLRKCSAAA------------LDVLANVYRDELLPH--------------- 397
Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
                  ++P L EL+                        +  WVV +     L  +   
Sbjct: 398 -------ILPLLKELL-----------------------FHHEWVVKESGILVLGAIAE- 426
Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
             GCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 427 --GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 484
Query: 245 --------------------------------------------------HKNLLILYDA 254
                                                             HKNLLILYDA
Sbjct: 485 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 544
Query: 255 IGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFLPY 314
           IGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSSVATALQ+GFLPY
Sbjct: 545 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 604
Query: 315 CEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVS 374
           CEPVY+RCV+L+++TL Q M N+  P+Q++APDKDFMIVALDLLSGLAEGL  +I+ LV+
Sbjct: 605 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 664
Query: 375 NSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISV 434
            SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPILG NLNP+ ISV
Sbjct: 665 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 724
Query: 435 CNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPH 494
           CNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTAITIGRLGYVCP 
Sbjct: 725 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 784
Query: 495 DVAPL--------CSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASWST 546
           +VAP+        C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+FIFFCDAVASW  
Sbjct: 785 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 844
Query: 547 PKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
           PK+DL++MF KILHGF+ QVGDENW+RF+DQFP  L++RL+A YGV
Sbjct: 845 PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 890
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query592
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-163
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 7e-23
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 2e-07
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 8e-75
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 9e-20
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 3e-15
1qgr_A876 Protein (importin beta subunit); transport recepto 4e-72
1qgr_A876 Protein (importin beta subunit); transport recepto 8e-22
1qgr_A 876 Protein (importin beta subunit); transport recepto 9e-07
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 4e-33
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-07
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-32
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 2e-31
2x1g_F971 Cadmus; transport protein, developmental protein, 5e-27
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 7e-24
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-12
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-11
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-08
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-07
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 9e-05
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-21
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-13
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-11
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 6e-12
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 5e-08
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 1e-11
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 7e-10
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 7e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-05
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 4e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 5e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 6e-05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 6e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-05
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 4e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 7e-04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 9e-04
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
 Score =  486 bits (1251), Expect = e-163
 Identities = 373/555 (67%), Positives = 439/555 (79%), Gaps = 36/555 (6%)

Query: 55  EEVEEEDDDLDDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIK 114
               + +     D ++SDWNLRKCSAAALDVLANV+R+ELLP +LP+LKE LFHH+W +K
Sbjct: 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376

Query: 115 ESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 174
           ESGIL LGAIAEGCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP 
Sbjct: 377 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436

Query: 175 DSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPH 234
           D+YLKPLM                    L+  + D    V+   C   +           
Sbjct: 437 DTYLKPLM------------------TELLKRILDSNKRVQEAACSAFATLEE-EACTEL 477

Query: 235 DSYLKPLMT---------EHKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNI 285
             YL  ++          +HKNLLILYDAIGTLADSVGHHLNKPEYI +LMPPLIQKWN+
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537

Query: 286 LKDEDKDLFPLLECLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDA 345
           LKDEDKDLFPLLECLSSVATALQ+GFLPYCEPVY+RCV+L+++TL Q M N+  P+Q++A
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597

Query: 346 PDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLT 405
           PDKDFMIVALDLLSGLAEGL  +I+ LV+ SNI+ L+YQCMQD MPEVRQSSFALLGDLT
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 657

Query: 406 KACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLI 465
           KACF HV PCI+DFMPILG NLNP+ ISVCNNATWAIGEIS+++G +M+ Y+PMV++QL+
Sbjct: 658 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV 717

Query: 466 IIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFR 517
            IINRPNTPKTLLENTAITIGRLGYVCP +VAP         C+SLRNIRDNEEKDSAFR
Sbjct: 718 EIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFR 777

Query: 518 GMCAMITVNPGGVVQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQ 577
           G+C MI+VNP GV+Q+FIFFCDAVASW  PK+DL++MF KILHGF+ QVGDENW+RF+DQ
Sbjct: 778 GICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQ 837

Query: 578 FPDQLRDRLSAMYGV 592
           FP  L++RL+A YGV
Sbjct: 838 FPLPLKERLAAFYGV 852
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.97
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.97
1qgr_A876 Protein (importin beta subunit); transport recepto 99.96
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.95
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.95
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.94
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.94
2x1g_F971 Cadmus; transport protein, developmental protein, 99.94
2x19_B963 Importin-13; nuclear transport, protein transport; 99.93
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.92
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.91
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.86
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.86
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.86
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.81
2x1g_F971 Cadmus; transport protein, developmental protein, 99.78
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.74
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.74
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.73
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.73
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.72
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.71
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.71
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.71
2x19_B963 Importin-13; nuclear transport, protein transport; 99.71
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.66
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.61
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.61
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.61
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.61
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.61
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.6
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.6
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.58
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.57
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.5
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.46
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.42
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.41
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.4
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.39
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.37
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.36
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.34
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.33
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.32
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.32
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.31
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.27
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.24
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.23
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.19
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.18
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.18
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.18
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.16
3nmz_A458 APC variant protein; protein-protein complex, arma 99.15
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.14
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.09
3nmz_A458 APC variant protein; protein-protein complex, arma 99.0
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.97
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 98.97
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.96
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.93
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.93
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.88
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.86
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.84
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.8
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.78
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.78
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.76
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.75
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.74
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 98.67
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.67
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.62
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.5
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.47
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.47
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.43
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.26
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 98.21
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.19
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.16
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.12
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.08
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.06
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.99
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 97.83
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.54
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 97.51
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.35
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.32
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.18
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 97.09
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.88
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.72
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.71
3grl_A 651 General vesicular transport factor P115; vesicle t 96.56
3grl_A 651 General vesicular transport factor P115; vesicle t 96.3
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.25
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.78
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 95.72
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 95.52
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 95.41
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 93.92
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 93.81
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 93.78
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 92.59
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 92.51
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 92.12
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.74
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 89.62
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 89.26
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 88.9
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 87.83
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 87.06
3g2s_A149 C-terminal fragment of sortilin-related receptor; 86.73
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 86.61
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 86.31
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 85.36
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 84.92
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 84.33
1t06_A235 Hypothetical protein; structural genomics, PSI, pr 82.58
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=100.00  E-value=6.1e-68  Score=612.77  Aligned_cols=506  Identities=74%  Similarity=1.275  Sum_probs=460.3

Q ss_pred             CccccchHHHHHHHHHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhc
Q psy9904          68 SSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCL  147 (592)
Q Consensus        68 ~~~~~w~~Rk~aa~~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L  147 (592)
                      |....|++|++|+.+|+.++..+|+.+++.++|++.+.++|++|++|++|+.+||.+++++++.+.+|++.++|.++..|
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l  409 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL  409 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence            34478999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhh
Q psy9904         148 SDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSH  227 (592)
Q Consensus       148 ~D~~~~VR~~a~~aL~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~  227 (592)
                      +|+++.||.+|+|+||++++++.+.....|+.++++.|++.+                  .|.+..+|..++++++.+++
T Consensus       410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L------------------~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI------------------LDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH------------------TCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876556677777776666544                  55577899999999999987


Q ss_pred             hhccCCcccchHHHHHh---------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHH
Q psy9904         228 WVVSQPHDSYLKPLMTE---------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLE  298 (592)
Q Consensus       228 ~~~~~~~~~y~~~~~~~---------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e  298 (592)
                      ..+.. ..||+.+++..         .++...++++++++++.+|+.+.+++|++.+||.+++.|+.+.++++++..+++
T Consensus       472 ~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~  550 (852)
T 4fdd_A          472 EACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLE  550 (852)
T ss_dssp             HHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHH
T ss_pred             HhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            77644 67787776653         234557899999999999999988899999999999999888887777788999


Q ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCch
Q psy9904         299 CLSSVATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNI  378 (592)
Q Consensus       299 ~l~~ia~~~g~~f~py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l  378 (592)
                      |++.++.++|..|.||+++++++++..+..++.+......+++..+.+|++++..++++++.+++++|.+|.+|+..+.+
T Consensus       551 ~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~  630 (852)
T 4fdd_A          551 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI  630 (852)
T ss_dssp             HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCH
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcH
Confidence            99999999999999999999999999999887655444445544456688899999999999999999999999855789


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHH
Q psy9904         379 MHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVP  458 (592)
Q Consensus       379 ~~~l~~~l~~~~~~vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~  458 (592)
                      ++.++.++++++++||+.++.++++++++++..+.+|++.++|.+.+.++++.+++|++|+|++|+++.++|.++.||++
T Consensus       631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~  710 (852)
T 4fdd_A          631 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP  710 (852)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCchHHHHHHHHHHHhhhhCCCchHh--------HhhhcccCCCchHhHHHHHHHHHHHhhCchhh
Q psy9904         459 MVINQLIIIINRPNTPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGV  530 (592)
Q Consensus       459 ~il~~L~~~l~~~~~~~~v~~na~~~lgrl~~~~~~~~~p--------~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~  530 (592)
                      .+++.|++++++++.++.+++|++.|||||+..+|+.++|        ||..|+.+.|++||.+||+|||.++..||+.+
T Consensus       711 ~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~  790 (852)
T 4fdd_A          711 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV  790 (852)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH
Confidence            9999999999988878899999999999999999876654        99999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhCC
Q psy9904         531 VQEFIFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV  592 (592)
Q Consensus       531 ~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  592 (592)
                      .++|..||++|++|..++++++++|.++|++||+++|+++|++++++|||+++++|+++|||
T Consensus       791 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  852 (852)
T 4fdd_A          791 IQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV  852 (852)
T ss_dssp             GGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999998889999999999999999999997
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 592
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-149
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 6e-12
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 1e-42
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 2e-42
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-29
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-05
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-25
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-10
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 5e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 8e-12
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_ 588 a.118.1.2 (A:) Constant regulatory domain of prote 0.001
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-11
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-10
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-08
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-05
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-10
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 3e-08
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 7e-04
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 0.002
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.002
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  449 bits (1155), Expect = e-149
 Identities = 406/598 (67%), Positives = 483/598 (80%), Gaps = 28/598 (4%)

Query: 5   AEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDL 64
           ++IDIILLKGDVEEDE IPD ++DIRPRFH+S+             E+G EE +++DD++
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVA------QQHDEDGIEEEDDDDDEI 362

Query: 65  DDDSSLSDWNLRKCSAAALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAI 124
           DDD ++SDWNLRKCSAAALDVLANV+R+ELLP +LP+LKE LFHH+W +KESGIL LGAI
Sbjct: 363 DDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 422

Query: 125 AEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 184
           AEGCM GM+P+L EL+P LI CLSDKKALVR+ITCWTLSRY+HWVVSQP D+YLKPLMTE
Sbjct: 423 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 482

Query: 185 MLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPLMTE 244
           +L  +      + E        L ++            +              L    ++
Sbjct: 483 LLKRILDSNKRVQEAACSAFATLEEE------------ACTELVPYLAYILDTLVFAFSK 530

Query: 245 --HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSS 302
             HKNLLILYDAIGTLADSVGHHLNKPEYI +LMPPLIQKWN+LKDEDKDLFPLLECLSS
Sbjct: 531 YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSS 590

Query: 303 VATALQAGFLPYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLA 362
           VATALQ+GFLPYCEPVY+RCV+L+++TL Q M N+  P+Q++APDKDFMIVALDLLSGLA
Sbjct: 591 VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLA 650

Query: 363 EGLDMHIDSLVSNSNIMHLLYQCMQDPMPEVRQSSFALLGDLTKACFSHVHPCISDFMPI 422
           EGL  +I+ LV+ SNI+ L+YQCMQD MPEVRQSSFALLGDLTKACF HV PCI+DFMPI
Sbjct: 651 EGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI 710

Query: 423 LGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPNTPKTLLENTA 482
           LG NLNP+ ISVCNNATWAIGEIS+++G +M+ Y+PMV++QL+ IINRPNTPKTLLENTA
Sbjct: 711 LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA 770

Query: 483 ITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEF 534
           ITIGRLGYVCP +VAP         C+SLRNIRDNEEKDSAFRG+C MI+VNP GV+Q+F
Sbjct: 771 ITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDF 830

Query: 535 IFFCDAVASWSTPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV 592
           IFFCDAVASW  PK+DL++MF KILHGF+ QVGDENW+RF+DQFP  L++RL+A YGV
Sbjct: 831 IFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 888
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query592
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.95
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.91
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.89
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.88
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.86
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.86
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.77
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.65
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.62
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.52
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.48
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.38
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.34
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.27
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.23
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.17
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.05
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.96
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.93
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.72
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.71
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.7
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.68
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.36
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.29
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.22
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.1
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.69
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 95.62
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.03
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 93.58
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.54
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.26
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 89.58
d1t06a_235 Hypothetical protein BC3264 {Bacillus cereus (stra 85.36
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 84.21
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 83.8
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 83.15
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 81.89
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 80.66
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-72  Score=646.80  Aligned_cols=566  Identities=72%  Similarity=1.240  Sum_probs=499.1

Q ss_pred             CCCcHHHHHHhcCCcccCCCCCCCCCCCCcccccccccccccccccCCCCCCCCCCCCccCCCCCCCccccchHHHHHHH
Q psy9904           2 NLSAEIDIILLKGDVEEDEMIPDRDEDIRPRFHKSKRSVKAEGENMNMGENGGEEVEEEDDDLDDDSSLSDWNLRKCSAA   81 (592)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~w~~Rk~aa~   81 (592)
                      .+|++.|+..+.++.++|+..+|+.+||+|+|++.+.........      ..++.++++++.+|++....|++|++|+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~r~~a~~  379 (888)
T d1qbkb_         306 MKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDED------GIEEEDDDDDEIDDDDTISDWNLRKCSAA  379 (888)
T ss_dssp             SCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----------CHHHHTTCCCSTTSCCSSHHHHHH
T ss_pred             hhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh------hhhhcccchhhhhhhhhhhhhhHHHHHHH
Confidence            368899999988877888999999999999999887554332111      11111222223345556778999999999


Q ss_pred             HHHHHHhhhchhhhHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhchhchhhhHhhHHHHHHHhccCChHHHHHHHHHH
Q psy9904          82 ALDVLANVFREELLPVLLPILKETLFHHDWEIKESGILALGAIAEGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWT  161 (592)
Q Consensus        82 ~L~~la~~~~~~vl~~ll~~l~~~l~s~~~~~R~aa~~aLg~iaeg~~~~i~~~l~~lvp~l~~~L~D~~~~VR~~a~~a  161 (592)
                      +|+.++..+|+++++.++|++.+.+++++|..|++|+++||++++||.+.+.+|+++++|.+++.|+|+++.||.+|||+
T Consensus       380 ~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~  459 (888)
T d1qbkb_         380 ALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWT  459 (888)
T ss_dssp             HSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccchHHHHHHHHccccCCccchhhhHHHHHHhcCchhhHHHHHHHhhhhhhhhhhccCCcccchHHH
Q psy9904         162 LSRYSHWVVSQPHDSYLKPLMTEMLGCMNGMVPHLNELVPFLITCLSDKKALVRAITCWTLSRYSHWVVSQPHDSYLKPL  241 (592)
Q Consensus       162 L~~l~~~~~~~~~~~~l~~ll~~Ll~~l~~~vq~l~~l~p~l~~il~d~~~~vr~~a~~~L~~~a~~~~~~~~~~y~~~~  241 (592)
                      ||++++|+.+....+|+.++++.++..+                  .|++..|+..+|++|..+++..+ ....||+.++
T Consensus       460 l~~~~~~~~~~~~~~~~~~~l~~ll~~l------------------~d~~~~V~~~a~~al~~l~~~~~-~~l~p~~~~i  520 (888)
T d1qbkb_         460 LSRYAHWVVSQPPDTYLKPLMTELLKRI------------------LDSNKRVQEAACSAFATLEEEAC-TELVPYLAYI  520 (888)
T ss_dssp             HHHTHHHHHSSCHHHHTTTHHHHHHHHH------------------SSSCHHHHHHHHHHHHHHHHHHT-TSSGGGHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHHh------------------cCCCHHHHHHHHHHHHHHHHHhh-hhhhhHHHHH
Confidence            9999999987655567766666665543                  55577888999999998876554 3467787776


Q ss_pred             HHh---------hhhHHHHHHHHHHHHHHhcccCCChhhHhhhhHHHHHHHhhcccCCccchHHHHHHHHHHHHHhhccc
Q psy9904         242 MTE---------HKNLLILYDAIGTLADSVGHHLNKPEYISLLMPPLIQKWNILKDEDKDLFPLLECLSSVATALQAGFL  312 (592)
Q Consensus       242 ~~~---------~~~l~~~~dai~~la~~~g~~~~~~~y~~~lmp~L~~~~~~~~d~~~~~~~~~e~l~~ia~~~g~~f~  312 (592)
                      +..         .+++..++++++++++.+|+.+..++|++.++|.+++.|+...++++.+..+++|++.++.++|..|.
T Consensus       521 l~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~  600 (888)
T d1qbkb_         521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL  600 (888)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHh
Confidence            643         35667889999999999999998889999999999999988777777778899999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhhhhhHhhhccCchHHHHHHHhCCCChH
Q psy9904         313 PYCEPVYRRCVSLIEQTLNQHMANSQNPEQFDAPDKDFMIVALDLLSGLAEGLDMHIDSLVSNSNIMHLLYQCMQDPMPE  392 (592)
Q Consensus       313 py~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~ald~l~~l~~~lg~~~~~~~~~~~l~~~l~~~l~~~~~~  392 (592)
                      ||.++++++++.++...+.+.......++..+.++.++...++++++++++++|.++.+++....+++++..++++.+++
T Consensus       601 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         601 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            99999999999999888776554433444445667889999999999999999999999986677999999999999999


Q ss_pred             HHHHHHHHHHHHHHHchhhhhhhhhhHHHHHHhccCCCChhHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHcCCC
Q psy9904         393 VRQSSFALLGDLTKACFSHVHPCISDFMPILGQNLNPDLISVCNNATWAIGEISVKLGEDMRRYVPMVINQLIIIINRPN  472 (592)
Q Consensus       393 vR~~a~~~l~~la~~~~~~~~~~l~~llp~l~~~l~~~~~~v~~~A~~~Lg~ia~~~~~~~~p~~~~il~~L~~~l~~~~  472 (592)
                      +|++|+.++|+++.+++..+.||++.++|.+.+.++++..+|+++|+|++|+|+.++|+.+.||++.+++.|++++++++
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~  760 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN  760 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCchHHHHHHHHHHHhhhhCCCchHh--------HhhhcccCCCchHhHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcc
Q psy9904         473 TPKTLLENTAITIGRLGYVCPHDVAP--------LCSSLRNIRDNEEKDSAFRGMCAMITVNPGGVVQEFIFFCDAVASW  544 (592)
Q Consensus       473 ~~~~v~~na~~~lgrl~~~~~~~~~p--------~~~~L~~~~d~~Ek~~a~~~l~~li~~~p~~~~~~~~~~~~~i~~~  544 (592)
                      .++++++|+|.|+||++..+|+.++|        ||..|+.++|++||.+||+|||.+++.||+++.++|+.||.+|++|
T Consensus       761 ~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~  840 (888)
T d1qbkb_         761 TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW  840 (888)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhc
Confidence            88999999999999999999987654        9999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHHHHhhCC
Q psy9904         545 STPKEDLKEMFHKILHGFRTQVGDENWQRFADQFPDQLRDRLSAMYGV  592 (592)
Q Consensus       545 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  592 (592)
                      ..+++++++++.++|++||+.+|+++|++++++|||++|++|+++|||
T Consensus       841 ~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~y~~  888 (888)
T d1qbkb_         841 INPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV  888 (888)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHHCC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHHHHHHHHHhhCc
Confidence            999999999999999999999998889999999999999999999997
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure