254780236

254780236

50S ribosomal protein L17

GeneID in NCBI database:8209217Locus tag:CLIBASIA_00605
Protein GI in NCBI database:254780236Protein Accession:YP_003064649.1
Gene range:-(129268, 129678)Protein Length:136aa
Gene description:50S ribosomal protein L17
COG prediction:[J] Ribosomal protein L17
KEGG prediction:rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SEED prediction:LSU ribosomal protein L17p
Pathway involved in KEGG:Ribosome [PATH:las03010]
Subsystem involved in SEED:Ribosome LSU bacterial
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKSHKVEK
cccccccccccccHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccEEEEEEEcccccccccHHHHHHHHHcc
ccccccccccccccHHHHHHHHHHHHHHHHHcEEEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHcHHHHccccccccEEEEEccccccccccEEEEEEEcccHHcccccHHHHHHHHcc
mrhaisgrklnrtSSHRKAMFSNMAASIIWHEQIVTtlpkakelrPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRysdrsggylrimkrgfrygdsapmaVIEFVDrdlsakgtpvsrkshkvek
mrhaisgrklnrtsshRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVtlgkkgglhSLRLaiskigdvdvVNKLFGIIAkrysdrsggylrIMKRGFRYGDSAPMAVIEFVDrdlsakgtpvsrkshkvek
MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKSHKVEK
*****SGR***RTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVD*******************
MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSA**************
*************SSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSA**************
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MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKSHKVEK
MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKSHKVEK
MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKSHKVEK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
163760825142 50S ribosomal protein L17 [Hoeflea phototrophica DFL-43 1 4e-49
15965134141 50S ribosomal protein L17 [Sinorhizobium meliloti 1021] 1 5e-49
227821780141 50S ribosomal protein L17 [Sinorhizobium fredii NGR234] 1 7e-49
327189695140 50S ribosomal protein L17 [Rhizobium etli CNPAF512] Len 1 1e-48
218516291138 50S ribosomal protein L17 [Rhizobium etli 8C-3] Length 1 2e-48
150396232141 50S ribosomal protein L17 [Sinorhizobium medicae WSM419 1 2e-48
190891380140 50S ribosomal protein L17 [Rhizobium etli CIAT 652] Len 1 2e-48
92117123138 50S ribosomal protein L17 [Nitrobacter hamburgensis X14 1 2e-48
222148391141 50S ribosomal protein L17 [Agrobacterium vitis S4] Leng 1 6e-48
86357330140 50S ribosomal protein L17 [Rhizobium etli CFN 42] Lengt 1 1e-47
>gi|163760825|ref|ZP_02167904.1| 50S ribosomal protein L17 [Hoeflea phototrophica DFL-43] Length = 142 Back     alignment and organism information
 Score =  197 bits (501), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 107/124 (86%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGRKLNRTSSHRKAMF+NMAAS+I HEQIVTTLPKAKE+RPIVEKLVTLGK+G L
Sbjct: 1   MRHGNSGRKLNRTSSHRKAMFANMAASLIEHEQIVTTLPKAKEIRPIVEKLVTLGKRGDL 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120
           H+ R AIS+I D D V KLF  IA RY+ R+GGY+RIMK GFR GD+APMAV+EFVDRD+
Sbjct: 61  HARRQAISQIRDNDAVRKLFDTIATRYATRNGGYIRIMKAGFRTGDNAPMAVVEFVDRDV 120

Query: 121 SAKG 124
            AKG
Sbjct: 121 DAKG 124



Species: Hoeflea phototrophica
Genus: Hoeflea
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|15965134|ref|NP_385487.1| 50S ribosomal protein L17 [Sinorhizobium meliloti 1021] Length = 141 Back     alignment and organism information
>gi|227821780|ref|YP_002825750.1| 50S ribosomal protein L17 [Sinorhizobium fredii NGR234] Length = 141 Back     alignment and organism information
>gi|327189695|gb|EGE56842.1| 50S ribosomal protein L17 [Rhizobium etli CNPAF512] Length = 140 Back     alignment and organism information
>gi|218516291|ref|ZP_03513131.1| 50S ribosomal protein L17 [Rhizobium etli 8C-3] Length = 138 Back     alignment and organism information
>gi|150396232|ref|YP_001326699.1| 50S ribosomal protein L17 [Sinorhizobium medicae WSM419] Length = 141 Back     alignment and organism information
>gi|190891380|ref|YP_001977922.1| 50S ribosomal protein L17 [Rhizobium etli CIAT 652] Length = 140 Back     alignment and organism information
>gi|92117123|ref|YP_576852.1| 50S ribosomal protein L17 [Nitrobacter hamburgensis X14] Length = 138 Back     alignment and organism information
>gi|222148391|ref|YP_002549348.1| 50S ribosomal protein L17 [Agrobacterium vitis S4] Length = 141 Back     alignment and organism information
>gi|86357330|ref|YP_469222.1| 50S ribosomal protein L17 [Rhizobium etli CFN 42] Length = 140 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
PRK05591113 PRK05591, rplQ, 50S ribosomal protein L17; Validated 6e-50
pfam0119697 pfam01196, Ribosomal_L17, Ribosomal protein L17 1e-38
TIGR00059112 TIGR00059, L17, ribosomal protein L17 5e-34
KOG3280171 KOG3280, KOG3280, KOG3280, Mitochondrial/chloroplast ri 2e-23
PTZ00076 253 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisio 4e-10
COG0203116 COG0203, RplQ, Ribosomal protein L17 [Translation, ribo 4e-43
>gnl|CDD|180154 PRK05591, rplQ, 50S ribosomal protein L17; Validated Back     alignment and domain information
>gnl|CDD|144696 pfam01196, Ribosomal_L17, Ribosomal protein L17 Back     alignment and domain information
>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17 Back     alignment and domain information
>gnl|CDD|38490 KOG3280, KOG3280, KOG3280, Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional Back     alignment and domain information
>gnl|CDD|30552 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 136 50S ribosomal protein L17 [Candidatus Liberibacter asia
PRK05591117 rplQ 50S ribosomal protein L17; Validated 100.0
COG0203116 RplQ Ribosomal protein L17 [Translation, ribosomal stru 100.0
TIGR00059125 L17 ribosomal protein L17; InterPro: IPR000456 Ribosome 100.0
PTZ00076 257 60S ribosomal protein L17; Provisional 100.0
pfam0119697 Ribosomal_L17 Ribosomal protein L17. 100.0
KOG3280171 consensus 100.0
>PRK05591 rplQ 50S ribosomal protein L17; Validated Back     alignment and domain information
>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00059 L17 ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PTZ00076 60S ribosomal protein L17; Provisional Back     alignment and domain information
>pfam01196 Ribosomal_L17 Ribosomal protein L17 Back     alignment and domain information
>KOG3280 consensus Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
1p85_L127 Real Space Refined Coordinates Of The 50s Subunit F 7e-37
3fik_N120 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-36
3bbo_P205 Homology Model For The Spinach Chloroplast 50s Subu 1e-34
2gya_L114 Structure Of The 50s Subunit Of A Pre-Translocation 4e-34
1gd8_A118 The Crystal Structure Of Bacteria-Specific L17 Ribo 2e-30
1nkw_L116 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-29
3fin_R117 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-29
1pnu_L114 Crystal Structure Of A Streptomycin Dependent Ribos 4e-28
2ftc_J116 Structural Model For The Large Subunit Of The Mamma 1e-20
2cqm_A122 Solution Structure Of The Mitochondrial Ribosomal P 6e-18
gi|33357913|pdb|1P85|L Chain L, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 127 Back     alignment and structure 
 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/126 (55%), Positives = 89/126 (70%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K   +
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120
            + RLA ++  D ++V KLF  +  R++ R+GGY RI+K GFR GD+APMA IE VDR  
Sbjct: 61  ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120

Query: 121 SAKGTP 126
            A+   
Sbjct: 121 KAEAAA 126
>gi|224510743|pdb|3FIK|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 120 Back     alignment and structure
gi|189096138|pdb|3BBO|P Chain P, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 205 Back     alignment and structure
>gi|116667446|pdb|2GYA|L Chain L, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 114 Back     alignment and structure
gi|15988229|pdb|1GD8|A Chain A, The Crystal Structure Of Bacteria-Specific L17 Ribosomal Protein. Length = 118 Back     alignment and structure
gi|28948931|pdb|1NKW|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 116 Back     alignment and structure
>gi|224510793|pdb|3FIN|R Chain R, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117 Back     alignment and structure
>gi|34811565|pdb|1PNU|L Chain L, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 114 Back     alignment and structure
>gi|99032316|pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 116 Back     alignment and structure
>gi|159163872|pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein L17 Isolog Length = 122 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
3ofq_N120 50S ribosomal protein L17; protein biosynthesis, riboso 3e-43
3bbo_P205 Ribosomal protein L17; large ribosomal subunit, spinach 1e-42
3i1n_N127 50S ribosomal protein L17; ribosome structure, protein- 8e-41
1gd8_A118 50S ribosomal protein L17; two domains, ribosomal prote 7e-40
2zjr_K116 50S ribosomal protein L17; ribosome, large ribosomal su 2e-37
2cqm_A122 Ribosomal protein L17 isolog; alpha and beta (A+B), str 4e-32
>3ofq_N 50S ribosomal protein L17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_N 2wwq_N 3ofr_N* 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* ... Length = 120 Back     alignment and structure
 Score =  168 bits (428), Expect = 3e-43
 Identities = 69/119 (57%), Positives = 87/119 (73%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K   +
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRD 119
            + RLA ++  D ++V KLF  +  R++ R+GGY RI+K GFR GD+APMA IE VDR 
Sbjct: 61  ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} SCOP: i.1.1.2 Length = 205 Back     alignment and structure
>3i1n_N 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ... Length = 127 Back     alignment and structure
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Length = 118 Back     alignment and structure
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Length = 116 Back     alignment and structure
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Length = 122 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
2zjr_K116 50S ribosomal protein L17; ribosome, large ribosomal su 100.0
3bbo_P205 Ribosomal protein L17; large ribosomal subunit, spinach 100.0
1gd8_A118 50S ribosomal protein L17; two domains, ribosomal prote 100.0
3ofq_N120 50S ribosomal protein L17; protein biosynthesis, riboso 100.0
2cqm_A122 Ribosomal protein L17 isolog; alpha and beta (A+B), str 100.0
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Back     alignment and structure
Probab=100.00  E-value=0  Score=329.21  Aligned_cols=116  Identities=51%  Similarity=0.757  Sum_probs=115.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||++++++|||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.+++.|+++++|||
T Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKe~r~~~EklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (116)
T 2zjr_K            1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM   80 (116)
T ss_dssp             --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99888889999785999999999999998669899658999999999999987740577777654013365499999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf             999988505877559987537899988757999952
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV  116 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElV  116 (136)
                      ++|+|||+|||||||||+|+|+|.||+|+||+||||
T Consensus        81 ~~lapry~~R~GGYTRI~kl~~R~gD~A~ma~iElV  116 (116)
T 2zjr_K           81 DEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV  116 (116)
T ss_dssp             HTHHHHTTTSCSCCCEEEECCCCTTTCCCEEEEEC-
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEC
T ss_conf             999798666998848888788999999876888749
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} SCOP: i.1.1.2 Back     alignment and structure
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Back     alignment and structure
>3ofq_N 50S ribosomal protein L17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_N 2wwq_N 3ofr_N* 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* ... Back     alignment and structure
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 136 50S ribosomal protein L17 [Candidatus Liberibacter asia
d2qamn1120 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 { 4e-41
d2zjrk1113 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 { 3e-35
d1gd8a_105 d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Therm 1e-30
d2cqma1109 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 2e-29
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

 Score =  160 bits (406), Expect = 4e-41
 Identities = 69/119 (57%), Positives = 87/119 (73%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K   +
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRD 119
            + RLA ++  D ++V KLF  +  R++ R+GGY RI+K GFR GD+APMA IE VDR 
Sbjct: 61  ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113 Back     information, alignment and structure
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Length = 105 Back     information, alignment and structure
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
d2qamn1120 Prokaryotic ribosomal protein L17 {Escherichia coli [Ta 100.0
d2zjrk1113 Prokaryotic ribosomal protein L17 {Deinococcus radiodur 100.0
d1gd8a_105 Prokaryotic ribosomal protein L17 {Thermus thermophilus 100.0
d2cqma1109 Prokaryotic ribosomal protein L17 {Human (Homo sapiens) 100.0
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=336.56  Aligned_cols=120  Identities=58%  Similarity=0.876  Sum_probs=118.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||+++++||||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|+++++|++.+|+.|++++.|||
T Consensus         1 MrH~~~~rklgr~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf   80 (120)
T d2qamn1           1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF   80 (120)
T ss_dssp             CCTTCCCCCTTSCTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99988889999983999999999999999749767649999999999999999842577788899871035888999899


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC
Q ss_conf             9999885058775599875378999887579999526886
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL  120 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElVd~~~  120 (136)
                      ++|+|||++||||||||+|+|+|.||+|+||+|||||+|.
T Consensus        81 ~~iapry~~R~GGYTRI~klg~R~GD~A~maiiElVd~~~  120 (120)
T d2qamn1          81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE  120 (120)
T ss_dssp             TTHHHHTTTCCSCCEECCCCCCCSSSCCCBCCEEETTCCC
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC
T ss_conf             9987685079988655442689999988878899722899
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 136 50S ribosomal protein L17 [Candidatus Liberibacter
3i1n_N_127 (N:) 50S ribosomal protein L17; ribosome structure 1e-41
3bbo_P_205 (P:) Ribosomal protein L17; large ribosomal subuni 6e-40
2zjr_K_116 (K:) 50S ribosomal protein L17; ribosome, large ri 3e-37
1gd8_A_118 (A:) 50S ribosomal protein L17; two domains, ribos 4e-37
2cqm_A_122 (A:) Ribosomal protein L17 isolog; alpha and beta 5e-36
>3i1n_N (N:) 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ...Length = 127 Back     alignment and structure
 Score =  162 bits (412), Expect = 1e-41
 Identities = 70/125 (56%), Positives = 89/125 (71%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K   +
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120
            + RLA ++  D ++V KLF  +  R++ R+GGY RI+K GFR GD+APMA IE VDR  
Sbjct: 61  ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120

Query: 121 SAKGT 125
            A+  
Sbjct: 121 KAEAA 125
>3bbo_P (P:) Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum}Length = 205 Back     alignment and structure
>2zjr_K (K:) 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 116 Back     alignment and structure
>1gd8_A (A:) 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus}Length = 118 Back     alignment and structure
>2cqm_A (A:) Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}Length = 122 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target136 50S ribosomal protein L17 [Candidatus Liberibacter asia
3i1n_N_127 50S ribosomal protein L17; ribosome structure, pro 100.0
2zjr_K_116 50S ribosomal protein L17; ribosome, large ribosom 100.0
1gd8_A_118 50S ribosomal protein L17; two domains, ribosomal 100.0
3bbo_P_205 Ribosomal protein L17; large ribosomal subunit, sp 100.0
2cqm_A_122 Ribosomal protein L17 isolog; alpha and beta (A+B) 100.0
>3i1n_N (N:) 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ... Back     alignment and structure
Probab=100.00  E-value=0  Score=338.64  Aligned_cols=125  Identities=56%  Similarity=0.854  Sum_probs=123.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||+++++||||++|||++||+||+++||+||+|+||++||||+|+|||+|||+||+|++|++|++.+||.|+++++|||
T Consensus         1 Mrh~~~~~klgr~~~hR~allrnl~t~Li~herI~TT~~KAkelr~~aEklIt~AK~~~~~~~r~~~~~L~~k~~v~KLf   80 (127)
T 3i1n_N            1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF   80 (127)
T ss_dssp             CCTTCCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf             99988889999880999999999999999759767659999999999999998732565777788750246889999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             999988505877559987537899988757999952688662225
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGT  125 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElVd~~~~~~~~  125 (136)
                      ++|+|||+|||||||||+|+++|.||+|+||+|||||+|.++.+.
T Consensus        81 ~~l~pRy~~R~gGYTRi~kl~~R~GD~A~maiiElvd~~~~~~~~  125 (127)
T 3i1n_N           81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAA  125 (127)
T ss_dssp             HTHHHHTTTCSSCCEEEEECCCCTTTCCCEEEEEESCCCC-----
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf             998798648898978887468999988786899971488765657
>2zjr_K (K:) 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} Back     alignment and structure
>1gd8_A (A:) 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} Back     alignment and structure
>3bbo_P (P:) Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} Back     alignment and structure
>2cqm_A (A:) Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure