254780236
50S ribosomal protein L17
GeneID in NCBI database: | 8209217 | Locus tag: | CLIBASIA_00605 |
Protein GI in NCBI database: | 254780236 | Protein Accession: | YP_003064649.1 |
Gene range: | -(129268, 129678) | Protein Length: | 136aa |
Gene description: | 50S ribosomal protein L17 | ||
COG prediction: | [J] Ribosomal protein L17 | ||
KEGG prediction: | rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 | ||
SEED prediction: | LSU ribosomal protein L17p | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome LSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | |||
163760825 | 142 | 50S ribosomal protein L17 [Hoeflea phototrophica DFL-43 | 1 | 4e-49 | |
15965134 | 141 | 50S ribosomal protein L17 [Sinorhizobium meliloti 1021] | 1 | 5e-49 | |
227821780 | 141 | 50S ribosomal protein L17 [Sinorhizobium fredii NGR234] | 1 | 7e-49 | |
327189695 | 140 | 50S ribosomal protein L17 [Rhizobium etli CNPAF512] Len | 1 | 1e-48 | |
218516291 | 138 | 50S ribosomal protein L17 [Rhizobium etli 8C-3] Length | 1 | 2e-48 | |
150396232 | 141 | 50S ribosomal protein L17 [Sinorhizobium medicae WSM419 | 1 | 2e-48 | |
190891380 | 140 | 50S ribosomal protein L17 [Rhizobium etli CIAT 652] Len | 1 | 2e-48 | |
92117123 | 138 | 50S ribosomal protein L17 [Nitrobacter hamburgensis X14 | 1 | 2e-48 | |
222148391 | 141 | 50S ribosomal protein L17 [Agrobacterium vitis S4] Leng | 1 | 6e-48 | |
86357330 | 140 | 50S ribosomal protein L17 [Rhizobium etli CFN 42] Lengt | 1 | 1e-47 |
>gi|163760825|ref|ZP_02167904.1| 50S ribosomal protein L17 [Hoeflea phototrophica DFL-43] Length = 142 | Back alignment and organism information |
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Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 95/124 (76%), Positives = 107/124 (86%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGRKLNRTSSHRKAMF+NMAAS+I HEQIVTTLPKAKE+RPIVEKLVTLGK+G L Sbjct: 1 MRHGNSGRKLNRTSSHRKAMFANMAASLIEHEQIVTTLPKAKEIRPIVEKLVTLGKRGDL 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120 H+ R AIS+I D D V KLF IA RY+ R+GGY+RIMK GFR GD+APMAV+EFVDRD+ Sbjct: 61 HARRQAISQIRDNDAVRKLFDTIATRYATRNGGYIRIMKAGFRTGDNAPMAVVEFVDRDV 120 Query: 121 SAKG 124 AKG Sbjct: 121 DAKG 124 |
Species: Hoeflea phototrophica Genus: Hoeflea Family: Phyllobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|15965134|ref|NP_385487.1| 50S ribosomal protein L17 [Sinorhizobium meliloti 1021] Length = 141 | Back alignment and organism information |
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>gi|227821780|ref|YP_002825750.1| 50S ribosomal protein L17 [Sinorhizobium fredii NGR234] Length = 141 | Back alignment and organism information |
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>gi|327189695|gb|EGE56842.1| 50S ribosomal protein L17 [Rhizobium etli CNPAF512] Length = 140 | Back alignment and organism information |
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>gi|218516291|ref|ZP_03513131.1| 50S ribosomal protein L17 [Rhizobium etli 8C-3] Length = 138 | Back alignment and organism information |
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>gi|150396232|ref|YP_001326699.1| 50S ribosomal protein L17 [Sinorhizobium medicae WSM419] Length = 141 | Back alignment and organism information |
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>gi|190891380|ref|YP_001977922.1| 50S ribosomal protein L17 [Rhizobium etli CIAT 652] Length = 140 | Back alignment and organism information |
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>gi|92117123|ref|YP_576852.1| 50S ribosomal protein L17 [Nitrobacter hamburgensis X14] Length = 138 | Back alignment and organism information |
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>gi|222148391|ref|YP_002549348.1| 50S ribosomal protein L17 [Agrobacterium vitis S4] Length = 141 | Back alignment and organism information |
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>gi|86357330|ref|YP_469222.1| 50S ribosomal protein L17 [Rhizobium etli CFN 42] Length = 140 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
PRK05591 | 113 | PRK05591, rplQ, 50S ribosomal protein L17; Validated | 6e-50 | |
pfam01196 | 97 | pfam01196, Ribosomal_L17, Ribosomal protein L17 | 1e-38 | |
TIGR00059 | 112 | TIGR00059, L17, ribosomal protein L17 | 5e-34 | |
KOG3280 | 171 | KOG3280, KOG3280, KOG3280, Mitochondrial/chloroplast ri | 2e-23 | |
PTZ00076 | 253 | PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisio | 4e-10 | |
COG0203 | 116 | COG0203, RplQ, Ribosomal protein L17 [Translation, ribo | 4e-43 |
>gnl|CDD|180154 PRK05591, rplQ, 50S ribosomal protein L17; Validated | Back alignment and domain information |
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>gnl|CDD|144696 pfam01196, Ribosomal_L17, Ribosomal protein L17 | Back alignment and domain information |
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>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17 | Back alignment and domain information |
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>gnl|CDD|38490 KOG3280, KOG3280, KOG3280, Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional | Back alignment and domain information |
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>gnl|CDD|30552 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
PRK05591 | 117 | rplQ 50S ribosomal protein L17; Validated | 100.0 | |
COG0203 | 116 | RplQ Ribosomal protein L17 [Translation, ribosomal stru | 100.0 | |
TIGR00059 | 125 | L17 ribosomal protein L17; InterPro: IPR000456 Ribosome | 100.0 | |
PTZ00076 | 257 | 60S ribosomal protein L17; Provisional | 100.0 | |
pfam01196 | 97 | Ribosomal_L17 Ribosomal protein L17. | 100.0 | |
KOG3280 | 171 | consensus | 100.0 |
>PRK05591 rplQ 50S ribosomal protein L17; Validated | Back alignment and domain information |
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>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00059 L17 ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PTZ00076 60S ribosomal protein L17; Provisional | Back alignment and domain information |
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>pfam01196 Ribosomal_L17 Ribosomal protein L17 | Back alignment and domain information |
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>KOG3280 consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
1p85_L | 127 | Real Space Refined Coordinates Of The 50s Subunit F | 7e-37 | |
3fik_N | 120 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 2e-36 | |
3bbo_P | 205 | Homology Model For The Spinach Chloroplast 50s Subu | 1e-34 | |
2gya_L | 114 | Structure Of The 50s Subunit Of A Pre-Translocation | 4e-34 | |
1gd8_A | 118 | The Crystal Structure Of Bacteria-Specific L17 Ribo | 2e-30 | |
1nkw_L | 116 | Crystal Structure Of The Large Ribosomal Subunit Fr | 2e-29 | |
3fin_R | 117 | T. Thermophilus 70s Ribosome In Complex With Mrna, | 2e-29 | |
1pnu_L | 114 | Crystal Structure Of A Streptomycin Dependent Ribos | 4e-28 | |
2ftc_J | 116 | Structural Model For The Large Subunit Of The Mamma | 1e-20 | |
2cqm_A | 122 | Solution Structure Of The Mitochondrial Ribosomal P | 6e-18 |
gi|33357913|pdb|1P85|L Chain L, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 127 | Back alignment and structure |
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 70/126 (55%), Positives = 89/126 (70%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K + Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120 + RLA ++ D ++V KLF + R++ R+GGY RI+K GFR GD+APMA IE VDR Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120 Query: 121 SAKGTP 126 A+ Sbjct: 121 KAEAAA 126 |
>gi|224510743|pdb|3FIK|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 120 | Back alignment and structure |
gi|189096138|pdb|3BBO|P Chain P, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 205 | Back alignment and structure |
>gi|116667446|pdb|2GYA|L Chain L, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 114 | Back alignment and structure |
gi|15988229|pdb|1GD8|A Chain A, The Crystal Structure Of Bacteria-Specific L17 Ribosomal Protein. Length = 118 | Back alignment and structure |
gi|28948931|pdb|1NKW|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 116 | Back alignment and structure |
>gi|224510793|pdb|3FIN|R Chain R, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117 | Back alignment and structure |
>gi|34811565|pdb|1PNU|L Chain L, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 114 | Back alignment and structure |
>gi|99032316|pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 116 | Back alignment and structure |
>gi|159163872|pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein L17 Isolog Length = 122 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
3ofq_N | 120 | 50S ribosomal protein L17; protein biosynthesis, riboso | 3e-43 | |
3bbo_P | 205 | Ribosomal protein L17; large ribosomal subunit, spinach | 1e-42 | |
3i1n_N | 127 | 50S ribosomal protein L17; ribosome structure, protein- | 8e-41 | |
1gd8_A | 118 | 50S ribosomal protein L17; two domains, ribosomal prote | 7e-40 | |
2zjr_K | 116 | 50S ribosomal protein L17; ribosome, large ribosomal su | 2e-37 | |
2cqm_A | 122 | Ribosomal protein L17 isolog; alpha and beta (A+B), str | 4e-32 |
>3ofq_N 50S ribosomal protein L17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_N 2wwq_N 3ofr_N* 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* ... Length = 120 | Back alignment and structure |
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Score = 168 bits (428), Expect = 3e-43 Identities = 69/119 (57%), Positives = 87/119 (73%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K + Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRD 119 + RLA ++ D ++V KLF + R++ R+GGY RI+K GFR GD+APMA IE VDR Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119 |
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} SCOP: i.1.1.2 Length = 205 | Back alignment and structure |
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>3i1n_N 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ... Length = 127 | Back alignment and structure |
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>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Length = 118 | Back alignment and structure |
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>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Length = 116 | Back alignment and structure |
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>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Length = 122 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
2zjr_K | 116 | 50S ribosomal protein L17; ribosome, large ribosomal su | 100.0 | |
3bbo_P | 205 | Ribosomal protein L17; large ribosomal subunit, spinach | 100.0 | |
1gd8_A | 118 | 50S ribosomal protein L17; two domains, ribosomal prote | 100.0 | |
3ofq_N | 120 | 50S ribosomal protein L17; protein biosynthesis, riboso | 100.0 | |
2cqm_A | 122 | Ribosomal protein L17 isolog; alpha and beta (A+B), str | 100.0 |
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O | Back alignment and structure |
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Probab=100.00 E-value=0 Score=329.21 Aligned_cols=116 Identities=51% Similarity=0.757 Sum_probs=115.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||++++++|||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.+++.|+++++||| T Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKe~r~~~EklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (116) T 2zjr_K 1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM 80 (116) T ss_dssp --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH T ss_conf 99888889999785999999999999998669899658999999999999987740577777654013365499999999 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEE Q ss_conf 999988505877559987537899988757999952 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElV 116 (136) ++|+|||+|||||||||+|+|+|.||+|+||+|||| T Consensus 81 ~~lapry~~R~GGYTRI~kl~~R~gD~A~ma~iElV 116 (116) T 2zjr_K 81 DEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV 116 (116) T ss_dssp HTHHHHTTTSCSCCCEEEECCCCTTTCCCEEEEEC- T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEC T ss_conf 999798666998848888788999999876888749 |
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} SCOP: i.1.1.2 | Back alignment and structure |
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>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... | Back alignment and structure |
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>3ofq_N 50S ribosomal protein L17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_N 2wwq_N 3ofr_N* 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* ... | Back alignment and structure |
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>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | |||
d2qamn1 | 120 | d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 { | 4e-41 | |
d2zjrk1 | 113 | d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 { | 3e-35 | |
d1gd8a_ | 105 | d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Therm | 1e-30 | |
d2cqma1 | 109 | d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 | 2e-29 |
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Prokaryotic ribosomal protein L17 superfamily: Prokaryotic ribosomal protein L17 family: Prokaryotic ribosomal protein L17 domain: Prokaryotic ribosomal protein L17 species: Escherichia coli [TaxId: 562] Score = 160 bits (406), Expect = 4e-41 Identities = 69/119 (57%), Positives = 87/119 (73%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K + Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRD 119 + RLA ++ D ++V KLF + R++ R+GGY RI+K GFR GD+APMA IE VDR Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119 |
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113 | Back information, alignment and structure |
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>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Length = 105 | Back information, alignment and structure |
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>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
d2qamn1 | 120 | Prokaryotic ribosomal protein L17 {Escherichia coli [Ta | 100.0 | |
d2zjrk1 | 113 | Prokaryotic ribosomal protein L17 {Deinococcus radiodur | 100.0 | |
d1gd8a_ | 105 | Prokaryotic ribosomal protein L17 {Thermus thermophilus | 100.0 | |
d2cqma1 | 109 | Prokaryotic ribosomal protein L17 {Human (Homo sapiens) | 100.0 |
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Prokaryotic ribosomal protein L17 superfamily: Prokaryotic ribosomal protein L17 family: Prokaryotic ribosomal protein L17 domain: Prokaryotic ribosomal protein L17 species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=336.56 Aligned_cols=120 Identities=58% Similarity=0.876 Sum_probs=118.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||+++++||||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|+++++|++.+|+.|++++.||| T Consensus 1 MrH~~~~rklgr~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf 80 (120) T d2qamn1 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF 80 (120) T ss_dssp CCTTCCCCCTTSCTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTT T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH T ss_conf 99988889999983999999999999999749767649999999999999999842577788899871035888999899 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC Q ss_conf 9999885058775599875378999887579999526886 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElVd~~~ 120 (136) ++|+|||++||||||||+|+|+|.||+|+||+|||||+|. T Consensus 81 ~~iapry~~R~GGYTRI~klg~R~GD~A~maiiElVd~~~ 120 (120) T d2qamn1 81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120 (120) T ss_dssp TTHHHHTTTCCSCCEECCCCCCCSSSCCCBCCEEETTCCC T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC T ss_conf 9987685079988655442689999988878899722899 |
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter | ||
3i1n_N_ | 127 | (N:) 50S ribosomal protein L17; ribosome structure | 1e-41 | |
3bbo_P_ | 205 | (P:) Ribosomal protein L17; large ribosomal subuni | 6e-40 | |
2zjr_K_ | 116 | (K:) 50S ribosomal protein L17; ribosome, large ri | 3e-37 | |
1gd8_A_ | 118 | (A:) 50S ribosomal protein L17; two domains, ribos | 4e-37 | |
2cqm_A_ | 122 | (A:) Ribosomal protein L17 isolog; alpha and beta | 5e-36 |
>3i1n_N (N:) 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ...Length = 127 | Back alignment and structure |
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Score = 162 bits (412), Expect = 1e-41 Identities = 70/125 (56%), Positives = 89/125 (71%) Query: 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60 MRH SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K + Sbjct: 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60 Query: 61 HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120 + RLA ++ D ++V KLF + R++ R+GGY RI+K GFR GD+APMA IE VDR Sbjct: 61 ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120 Query: 121 SAKGT 125 A+ Sbjct: 121 KAEAA 125 |
>3bbo_P (P:) Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum}Length = 205 | Back alignment and structure |
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>2zjr_K (K:) 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 116 | Back alignment and structure |
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>1gd8_A (A:) 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus}Length = 118 | Back alignment and structure |
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>2cqm_A (A:) Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}Length = 122 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 136 | 50S ribosomal protein L17 [Candidatus Liberibacter asia | ||
3i1n_N_ | 127 | 50S ribosomal protein L17; ribosome structure, pro | 100.0 | |
2zjr_K_ | 116 | 50S ribosomal protein L17; ribosome, large ribosom | 100.0 | |
1gd8_A_ | 118 | 50S ribosomal protein L17; two domains, ribosomal | 100.0 | |
3bbo_P_ | 205 | Ribosomal protein L17; large ribosomal subunit, sp | 100.0 | |
2cqm_A_ | 122 | Ribosomal protein L17 isolog; alpha and beta (A+B) | 100.0 |
>3i1n_N (N:) 50S ribosomal protein L17; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N 2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N 2qoz_N* 2qp1_N* ... | Back alignment and structure |
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Probab=100.00 E-value=0 Score=338.64 Aligned_cols=125 Identities=56% Similarity=0.854 Sum_probs=123.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||+++++||||++|||++||+||+++||+||+|+||++||||+|+|||+|||+||+|++|++|++.+||.|+++++||| T Consensus 1 Mrh~~~~~klgr~~~hR~allrnl~t~Li~herI~TT~~KAkelr~~aEklIt~AK~~~~~~~r~~~~~L~~k~~v~KLf 80 (127) T 3i1n_N 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF 80 (127) T ss_dssp CCTTCCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTTCCHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH T ss_conf 99988889999880999999999999999759767659999999999999998732565777788750246889999999 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC Q ss_conf 999988505877559987537899988757999952688662225 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGT 125 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElVd~~~~~~~~ 125 (136) ++|+|||+|||||||||+|+++|.||+|+||+|||||+|.++.+. T Consensus 81 ~~l~pRy~~R~gGYTRi~kl~~R~GD~A~maiiElvd~~~~~~~~ 125 (127) T 3i1n_N 81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKAEAA 125 (127) T ss_dssp HTHHHHTTTCSSCCEEEEECCCCTTTCCCEEEEEESCCCC----- T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC T ss_conf 998798648898978887468999988786899971488765657 |
>2zjr_K (K:) 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} | Back alignment and structure |
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>1gd8_A (A:) 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} | Back alignment and structure |
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>3bbo_P (P:) Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} | Back alignment and structure |
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>2cqm_A (A:) Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
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