254780254

254780254

50S ribosomal protein L16

GeneID in NCBI database:8209235Locus tag:CLIBASIA_00695
Protein GI in NCBI database:254780254Protein Accession:YP_003064667.1
Gene range:-(138729, 139145)Protein Length:138aa
Gene description:50S ribosomal protein L16
COG prediction:[J] Ribosomal protein L16/L10E
KEGG prediction:rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SEED prediction:LSU ribosomal protein L16p (L10e)
Pathway involved in KEGG:Ribosome [PATH:las03010]
Subsystem involved in SEED:Ribosome LSU bacterial
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE
ccccccccccccccccccccccccccEEEEccEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEcccccEEEcccccccccccccccEEEEEcccccEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEcc
cccccHHHHHHHHHccccEEEccccccccccHHHHHcccccHccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEcccccccccEEEEEEccccEEEEEccccHHHHHHHHHHHHccccccEEEEEEEcc
mlrqpkntkypkqfKGRIkgvakggsricfgnfALKAQEANRIGSSEIEAARRAISRGMKRAGRVWIcvfpdvpvtakptevrmgkgkgnveKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE
mlrqpkntkypkqfkgrikgvakggsRICFGNFALKaqeanrigsseiEAARRAISRGMKRAGRVWICVfpdvpvtakptevrmgkgkgnvekwvcrvKPGRILFEIDGVSEEVARRAFrlgaaklsvvTKFIQRVVE
MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE
*****KN**************AKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRM*KGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRV**
*********YPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE
*LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV*
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MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE
MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE
MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
315122811137 50S ribosomal protein L16 [Candidatus Liberibacter sola 1 8e-60
150396214137 50S ribosomal protein L16 [Sinorhizobium medicae WSM419 1 5e-55
222085682137 ribosomal protein L16 [Agrobacterium radiobacter K84] L 1 1e-54
86357312137 50S ribosomal protein L16 [Rhizobium etli CFN 42] Lengt 1 1e-54
15965116137 50S ribosomal protein L16 [Sinorhizobium meliloti 1021] 1 1e-54
116251547137 50S ribosomal protein L16 [Rhizobium leguminosarum bv. 1 4e-54
325293329137 50S ribosomal protein L16 [Agrobacterium sp. H13-3] Len 1 7e-54
15889235137 50S ribosomal protein L16 [Agrobacterium tumefaciens st 1 2e-53
222148373137 50S ribosomal protein L16 [Agrobacterium vitis S4] Leng 1 6e-53
163760806137 50S ribosomal protein L16 [Hoeflea phototrophica DFL-43 1 2e-52
>gi|315122811|ref|YP_004063300.1| 50S ribosomal protein L16 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 137 Back     alignment and organism information
 Score =  233 bits (593), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 125/135 (92%)

Query: 4   QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAG 63
           QPKNTKYPKQFKGRIKG+AK GSRI FG FALKAQE NR+G+ EIEAARRAISR MKRAG
Sbjct: 3   QPKNTKYPKQFKGRIKGIAKRGSRIAFGEFALKAQEPNRVGAREIEAARRAISRSMKRAG 62

Query: 64  RVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGA 123
            +W+CVFPD+PVTAKPTEVRMGKGKG+VE+WVCRVKPGRILFE+DGVSE+VAR A RLGA
Sbjct: 63  CIWVCVFPDIPVTAKPTEVRMGKGKGSVEEWVCRVKPGRILFELDGVSEKVAREALRLGA 122

Query: 124 AKLSVVTKFIQRVVE 138
           +KLSVVTKF+QR+ E
Sbjct: 123 SKLSVVTKFVQRIAE 137


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|150396214|ref|YP_001326681.1| 50S ribosomal protein L16 [Sinorhizobium medicae WSM419] Length = 137 Back     alignment and organism information
>gi|222085682|ref|YP_002544212.1| ribosomal protein L16 [Agrobacterium radiobacter K84] Length = 137 Back     alignment and organism information
>gi|86357312|ref|YP_469204.1| 50S ribosomal protein L16 [Rhizobium etli CFN 42] Length = 137 Back     alignment and organism information
>gi|15965116|ref|NP_385469.1| 50S ribosomal protein L16 [Sinorhizobium meliloti 1021] Length = 137 Back     alignment and organism information
>gi|116251547|ref|YP_767385.1| 50S ribosomal protein L16 [Rhizobium leguminosarum bv. viciae 3841] Length = 137 Back     alignment and organism information
>gi|325293329|ref|YP_004279193.1| 50S ribosomal protein L16 [Agrobacterium sp. H13-3] Length = 137 Back     alignment and organism information
>gi|15889235|ref|NP_354916.1| 50S ribosomal protein L16 [Agrobacterium tumefaciens str. C58] Length = 137 Back     alignment and organism information
>gi|222148373|ref|YP_002549330.1| 50S ribosomal protein L16 [Agrobacterium vitis S4] Length = 137 Back     alignment and organism information
>gi|163760806|ref|ZP_02167885.1| 50S ribosomal protein L16 [Hoeflea phototrophica DFL-43] Length = 137 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
PRK09203138 PRK09203, rplP, 50S ribosomal protein L16; Reviewed 4e-60
TIGR01164126 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/ 8e-44
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e 2e-43
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Translation, 4e-39
KOG3422221 KOG3422, KOG3422, KOG3422, Mitochondrial ribosomal prot 2e-29
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is 1e-28
CHL00044135 CHL00044, rpl16, ribosomal protein L16 3e-46
>gnl|CDD|181697 PRK09203, rplP, 50S ribosomal protein L16; Reviewed Back     alignment and domain information
>gnl|CDD|130232 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/organelle Back     alignment and domain information
>gnl|CDD|144001 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information
>gnl|CDD|30546 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|38632 KOG3422, KOG3422, KOG3422, Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|88606 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|176985 CHL00044, rpl16, ribosomal protein L16 Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 138 50S ribosomal protein L16 [Candidatus Liberibacter asia
PRK09203138 rplP 50S ribosomal protein L16; Reviewed 100.0
CHL00044136 rpl16 ribosomal protein L16 100.0
TIGR01164126 rplP_bact ribosomal protein L16; InterPro: IPR000114 Ri 100.0
COG0197146 RplP Ribosomal protein L16/L10E [Translation, ribosomal 100.0
pfam00252129 Ribosomal_L16 Ribosomal protein L16p/L10e. 100.0
KOG3422221 consensus 100.0
cd01433112 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essent 100.0
PRK04199173 rpl10e 50S ribosomal protein L10e; Reviewed 99.76
PTZ00173215 60S ribosomal protein L10; Provisional 99.61
TIGR00279183 L10e ribosomal protein L10.e; InterPro: IPR001197 Ribos 98.82
KOG0857212 consensus 98.24
>PRK09203 rplP 50S ribosomal protein L16; Reviewed Back     alignment and domain information
>CHL00044 rpl16 ribosomal protein L16 Back     alignment and domain information
>TIGR01164 rplP_bact ribosomal protein L16; InterPro: IPR000114 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>pfam00252 Ribosomal_L16 Ribosomal protein L16p/L10e Back     alignment and domain information
>KOG3422 consensus Back     alignment and domain information
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>PTZ00173 60S ribosomal protein L10; Provisional Back     alignment and domain information
>TIGR00279 L10e ribosomal protein L10 Back     alignment and domain information
>KOG0857 consensus Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
1nkw_K142 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-47
1njm_K141 The Crystal Structure Of The 50s Large Ribosomal Su 9e-47
1p85_K136 Real Space Refined Coordinates Of The 50s Subunit F 7e-45
1wki_A141 Solution Structure Of Ribosomal Protein L16 From Th 3e-44
1vsa_K141 Crystal Structure Of A 70s Ribosome-Trna Complex Re 5e-44
2gya_K131 Structure Of The 50s Subunit Of A Pre-Translocation 7e-43
3bbo_O135 Homology Model For The Spinach Chloroplast 50s Subu 8e-42
3fin_Q136 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-41
3pyo_M136 Crystal Structure Of A Complex Containing Domain 3 3e-41
1pnu_K124 Crystal Structure Of A Streptomycin Dependent Ribos 5e-41
2ftc_I118 Structural Model For The Large Subunit Of The Mamma 2e-20
2pa2_A151 Crystal Structure Of Human Ribosomal Protein L10 Co 3e-06
3izr_I224 Localization Of The Large Subunit Ribosomal Protein 3e-06
3jyw_I165 Structure Of The 60s Proteins For Eukaryotic Riboso 7e-06
3izs_I221 Localization Of The Large Subunit Ribosomal Protein 1e-05
1s1i_I168 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-05
2zkr_h214 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-05
1yhq_H177 Crystal Structure Of Azithromycin Bound To The G209 4e-04
3i55_H174 Co-Crystal Structure Of Mycalamide A Bound To The L 4e-04
2qex_H174 Negamycin Binds To The Wall Of The Nascent Chain Ex 5e-04
1s72_H171 Refined Crystal Structure Of The Haloarcula Marismo 6e-04
gi|28948930|pdb|1NKW|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 142 Back     alignment and structure
 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/137 (53%), Positives = 96/137 (70%)

Query: 1   MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
           M+  PK TK+ KQF+GR+ G AKGG  + FG++ L A E   I S++IEA R  +SR  +
Sbjct: 1   MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFR 60

Query: 61  RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
           R G+++I +FPD PVT KP E RMGKGKG VE WV  VKPGR++FE+ GV+EE A+ AFR
Sbjct: 61  RGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFR 120

Query: 121 LGAAKLSVVTKFIQRVV 137
           L   KL + TK ++R V
Sbjct: 121 LAGHKLPIQTKMVKREV 137


gi|28948893|pdb|1NJM|K Chain K, The Crystal Structure Of The 50s Large Ribosomal Subunit From Deinococcus Radiodurans Complexed With A Trna Acceptor Stem Mimic (Asm) And The Antibiotic Sparsomycin Length = 141 Back     alignment and structure
gi|33357912|pdb|1P85|K Chain K, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 136 Back     alignment and structure
gi|58177182|pdb|1WKI|A Chain A, Solution Structure Of Ribosomal Protein L16 From Thermus Thermophilus Hb8 Length = 141 Back     alignment and structure
gi|149240896|pdb|1VSA|K Chain K, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 141 Back     alignment and structure
>gi|116667445|pdb|2GYA|K Chain K, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 131 Back     alignment and structure
gi|189096137|pdb|3BBO|O Chain O, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 135 Back     alignment and structure
>gi|224510792|pdb|3FIN|Q Chain Q, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 136 Back     alignment and structure
>gi|322812584|pdb|3PYO|M Chain M, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 136 Back     alignment and structure
>gi|34811564|pdb|1PNU|K Chain K, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 124 Back     alignment and structure
>gi|99032315|pdb|2FTC|I Chain I, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 118 Back     alignment and structure
>gi|169791690|pdb|2PA2|A Chain A, Crystal Structure Of Human Ribosomal Protein L10 Core Domain Length = 151 Back     alignment and structure
>gi|315113300|pdb|3IZR|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 224 Back     alignment and structure
>gi|281500839|pdb|3JYW|I Chain I, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 165 Back     alignment and structure
>gi|315113351|pdb|3IZS|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 221 Back     alignment and structure
>gi|49258847|pdb|1S1I|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 168 Back     alignment and structure
gi|187609306|pdb|2ZKR|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 214 Back     alignment and structure
gi|66360791|pdb|1YHQ|H Chain H, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 177 Back     alignment and structure
>gi|290790043|pdb|3I55|H Chain H, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit Length = 174 Back     alignment and structure
>gi|208435502|pdb|2QEX|H Chain H, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit Length = 174 Back     alignment and structure
>gi|50513477|pdb|1S72|H Chain H, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 171 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
3ofq_M136 50S ribosomal protein L16; protein biosynthesis, riboso 6e-47
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, spinach 7e-42
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosomal su 1e-41
3i1n_M136 50S ribosomal protein L16; ribosome structure, protein- 2e-40
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal prot 6e-31
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA, pro 2e-23
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein-prote 1e-19
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60S rib 8e-19
2pa2_A151 60S ribosomal protein L10; QM protein, , structural gen 3e-17
>3ofq_M 50S ribosomal protein L16; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Length = 136 Back     alignment and structure
 Score =  181 bits (460), Expect = 6e-47
 Identities = 76/137 (55%), Positives = 103/137 (75%), Gaps = 2/137 (1%)

Query: 1   MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
           ML QPK TK+ K  KGR +G+A+G + + FG+F LKA    R+ + +IEAARRA++R +K
Sbjct: 1   ML-QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVK 58

Query: 61  RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
           R G++WI VFPD P+T KP  VRMGKGKGNVE WV  ++PG++L+E+DGV EE+AR AF+
Sbjct: 59  RQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFK 118

Query: 121 LGAAKLSVVTKFIQRVV 137
           L AAKL + T F+ + V
Sbjct: 119 LAAAKLPIKTTFVTKTV 135


>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 135 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 1nwy_K* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N 1vp0_N 1wki_A ... Length = 142 Back     alignment and structure
>3i1n_M 50S ribosomal protein L16; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M 2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* 2qp1_M* ... Length = 136 Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I Length = 118 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I Length = 214 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosomal su 100.0
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, spinach 100.0
3ofq_M136 50S ribosomal protein L16; protein biosynthesis, riboso 100.0
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal prot 100.0
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA, pro 100.0
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60S rib 100.0
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein-prote 100.0
2pa2_A151 60S ribosomal protein L10; QM protein, , structural gen 100.0
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 1nwy_K* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N 1vp0_N 1wki_A ... Back     alignment and structure
Probab=100.00  E-value=0  Score=372.56  Aligned_cols=137  Identities=53%  Similarity=0.922  Sum_probs=135.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECC
Q ss_conf             99888775510678989723477875312131032740531325999999999999742678468987549860786215
Q gi|254780254|r    1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPT   80 (138)
Q Consensus         1 mml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~   80 (138)
                      |||+||+|||+|+|||+++|.++++|.|.||+|||+|+|+|+||++||||||++|+|+|++.|++|||||||.|||+||+
T Consensus         1 mml~PKrtKyrK~~kgr~~g~~~~~~~l~fG~yGl~a~~~g~it~~qiEa~R~~I~r~lkr~gk~wirv~p~~pvTkKp~   80 (142)
T 2zjr_J            1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPA   80 (142)
T ss_dssp             -----CCCSSCCCCCCCCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCSSCCCCCCCCCCCCEECCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCC
T ss_conf             98887754312566899877477888862324135981263342999999999999750328449999789974265665


Q ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             440014478811069983215089997497999999999998543895179999862
Q gi|254780254|r   81 EVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        81 e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      |+|||+|||++|||||+|+||+||||++|+++++|++||+++++|||++|+||+|++
T Consensus        81 e~RMGkGKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~aa~KLP~k~k~I~r~~  137 (142)
T 2zjr_J           81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREV  137 (142)
T ss_dssp             SCCCSSSCCTTSEEBCCBCTTEEEECCCSSCSTTTTTHHHHHHHTCSSCEEEECSCC
T ss_pred             CCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             454678888800079997789799997798999999999998752797379997164



>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure
>3ofq_M 50S ribosomal protein L16; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I 3jyw_I Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 138 50S ribosomal protein L16 [Candidatus Liberibacter asia
d2gyck1131 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia 2e-39
d2j01q1136 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus ther 1e-38
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcu 2e-21
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Hal 2e-20
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo 9e-20
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Length = 131 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]
 Score =  154 bits (392), Expect = 2e-39
 Identities = 73/132 (55%), Positives = 100/132 (75%), Gaps = 1/132 (0%)

Query: 4   QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAG 63
           QPK TK+ K  KGR +G+A+G + + FG+F LKA    R+ + +IEAARRA++R +KR G
Sbjct: 1   QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQG 59

Query: 64  RVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGA 123
           ++WI VFPD P+T KP  VRMGKGKGNVE WV  ++PG++L+E+DGV EE+AR AF+L A
Sbjct: 60  KIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAA 119

Query: 124 AKLSVVTKFIQR 135
           AKL + T F+ +
Sbjct: 120 AKLPIKTTFVTK 131


>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Length = 136 Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
d2gyck1131 Ribosomal protein L16p {Escherichia coli [TaxId: 562]} 100.0
d2j01q1136 Ribosomal protein L16p {Thermus thermophilus [TaxId: 27 100.0
d1jj2h_167 Ribosomal protein L10e {Archaeon Haloarcula marismortui 100.0
d1vqoh1163 Ribosomal protein L10e {Archaeon Haloarcula marismortui 100.0
d2pa2a1137 Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 96 100.0
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]
Probab=100.00  E-value=0  Score=356.12  Aligned_cols=131  Identities=56%  Similarity=1.002  Sum_probs=128.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             88775510678989723477875312131032740531325999999999999742678468987549860786215440
Q gi|254780254|r    4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVR   83 (138)
Q Consensus         4 ~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~R   83 (138)
                      |||+|||||+||||++|.+ +++.|+||+|||+|+|+|+||++||||||++|+|+|+++|++|||+|||+|||+||+|+|
T Consensus         1 qPkrtK~rK~~kgr~~g~~-~g~~l~~G~yGL~ale~g~it~~qiEa~R~~i~R~lkr~gk~wirifP~~pvTkKp~e~R   79 (131)
T d2gyck1           1 QPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVR   79 (131)
T ss_dssp             CCCCCCSSCCCCCCSCCCC-CSCCSSCCCCCCEEESCEEEEHHHHHHHHHHHHTTCTTCCCEEECCCCCBCCCBCCSSCS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEEECCCCEECHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCE
T ss_conf             9897764577699986667-685371005235866573466999999999999864107669998538688982434423


Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             0144788110699832150899974979999999999985438951799998
Q gi|254780254|r   84 MGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR  135 (138)
Q Consensus        84 MGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k  135 (138)
                      ||+|||++|||||+|+||+||||++|+++++|++||++|++|||++|+||+|
T Consensus        80 MGkGKG~~~~wva~Vk~G~ilfEi~gv~e~~a~~al~~aa~KLP~k~k~i~k  131 (131)
T d2gyck1          80 MGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTK  131 (131)
T ss_dssp             SCCCBCCSCCCEEEECTEEECEEECCCSCCSSHHHHHHHTTTSSSCBCCCCC
T ss_pred             ECCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             0377688726899964897999975899999999999998618986899869



>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 138 50S ribosomal protein L16 [Candidatus Liberibacter
3bbo_O_135 (O:) Ribosomal protein L16; large ribosomal subuni 2e-31
2zjr_J_142 (J:) 50S ribosomal protein L16; ribosome, large ri 1e-30
3i1n_M_136 (M:) 50S ribosomal protein L16; ribosome structure 1e-29
1ffk_F_157 (F:) Ribosomal protein L10E; ribosome assembly, RN 8e-26
2zkr_h_214 (h:) 60S ribosomal protein L10; protein-RNA comple 8e-25
1vq8_H_171 (H:) 50S ribosomal protein L10E; ribosome 50S, pro 9e-24
2ftc_I_118 (I:) Mitochondrial ribosomal protein L16, 39S ribo 7e-23
2pa2_A_151 (A:) 60S ribosomal protein L10; QM protein, , stru 8e-23
>3bbo_O (O:) Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 135 Back     alignment and structure
 Score =  128 bits (324), Expect = 2e-31
 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 1/135 (0%)

Query: 1   MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
           ML  PK T++ KQ +GR+KG++  G+RICFG +AL+A E   I S +IEA RRA++R  +
Sbjct: 1   ML-SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59

Query: 61  RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
           R G++W+ +FPD PVT +P E RMG GKG+ E WV  VKPGRIL+EI GV+E +ARRA  
Sbjct: 60  RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVA 119

Query: 121 LGAAKLSVVTKFIQR 135
           + A+K+ + T+FI  
Sbjct: 120 IAASKMPIRTQFIIS 134


>2zjr_J (J:) 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 142 Back     alignment and structure
>3i1n_M (M:) 50S ribosomal protein L16; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M 2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* 2qp1_M* ...Length = 136 Back     alignment and structure
>1ffk_F (F:) Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui}Length = 157 Back     alignment and structure
>2zkr_h (h:) 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_ILength = 214 Back     alignment and structure
>1vq8_H (H:) 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}Length = 171 Back     alignment and structure
>2ftc_I (I:) Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_ILength = 118 Back     alignment and structure
>2pa2_A (A:) 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens}Length = 151 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target138 50S ribosomal protein L16 [Candidatus Liberibacter asia
2zjr_J_142 50S ribosomal protein L16; ribosome, large ribosom 100.0
3bbo_O_135 Ribosomal protein L16; large ribosomal subunit, sp 100.0
3i1n_M_136 50S ribosomal protein L16; ribosome structure, pro 100.0
2ftc_I_118 Mitochondrial ribosomal protein L16, 39S ribosomal 100.0
2zkr_h_214 60S ribosomal protein L10; protein-RNA complex, 60 100.0
1vq8_H_171 50S ribosomal protein L10E; ribosome 50S, protein- 100.0
2pa2_A_151 60S ribosomal protein L10; QM protein, , structura 100.0
1ffk_F_157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 100.0
>2zjr_J (J:) 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} Back     alignment and structure
Probab=100.00  E-value=0  Score=331.17  Aligned_cols=138  Identities=53%  Similarity=0.909  Sum_probs=135.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECC
Q ss_conf             99888775510678989723477875312131032740531325999999999999742678468987549860786215
Q gi|254780254|r    1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPT   80 (138)
Q Consensus         1 mml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~   80 (138)
                      |||+||+++|+|+|+++++|.+.+++.|.||+|||+|+|+++|+++||||||++|+|+|++.+++|+++|||.|||+||+
T Consensus         1 m~~~Pkr~k~rK~~k~ri~g~~~~~~~l~~g~~gL~a~e~g~i~~~qlEaaR~~i~r~l~k~~~~~i~v~p~~~vt~k~~   80 (142)
T 2zjr_J            1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPA   80 (142)
T ss_dssp             -----CCCSSCCCCCCCCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCSSCCCCCCCCCCCCEECCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHCCEEECCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCC
T ss_conf             99887764314566899877167774620111165855384883999999999999743628569999838964686045


Q ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             4400144788110699832150899974979999999999985438951799998629
Q gi|254780254|r   81 EVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE  138 (138)
Q Consensus        81 e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~~  138 (138)
                      |+|||+|||+||||||+|++|+||||++|+++++|++||++|++|||++|+||.++.+
T Consensus        81 ~~rMGkGKG~~~~~va~Vk~G~iifEi~~~~~~~a~~al~~a~~KLP~~~~iv~~~~~  138 (142)
T 2zjr_J           81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVY  138 (142)
T ss_dssp             SCCCSSSCCTTSEEBCCBCTTEEEECCCSSCSTTTTTHHHHHHHTCSSCEEEECSCCC
T ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             3347789898204899962364899956999999999999876518974799971643



>3bbo_O (O:) Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3i1n_M (M:) 50S ribosomal protein L16; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M 2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* 2qp1_M* ... Back     alignment and structure
>2ftc_I (I:) Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I Back     alignment and structure
>2zkr_h (h:) 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I Back     alignment and structure
>1vq8_H (H:) 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} Back     alignment and structure
>2pa2_A (A:) 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} Back     alignment and structure
>1ffk_F (F:) Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} Back     alignment and structure