254780626

 Score =  133 bits (335), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKKM+RKIARRTL+NKSRRS VR+F+R ANEAI  GK+EEATEAC+KAES++QK
Sbjct: 1  MANTQSAKKMVRKIARRTLLNKSRRSFVRTFIRRANEAIAVGKVEEATEACKKAESLVQK 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          AKSKG+FH N ASR VSRLSKRLK +
Sbjct: 61 AKSKGVFHRNTASRTVSRLSKRLKNM 86

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK  RKIARRT +NK+RRS VR F+R   EAI  G +  ATEA + A+  IQ+
Sbjct: 1  MANTTSAKKATRKIARRTAVNKARRSRVRGFIRKVEEAIATGDLAVATEALKAAQPEIQR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A ++G+ HGN ASRKVSRL++R+K +
Sbjct: 61 AATRGVLHGNTASRKVSRLAQRVKAL 86

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK  RKIARRT +NK+RRS VR F+R   EAI  G +  ATEA + A+  IQ+
Sbjct: 1  MANTTSAKKATRKIARRTAVNKARRSRVRGFIRKVEEAIASGDLAVATEALKAAQPEIQR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A ++G+ HGN ASRKVSRL++R+K +
Sbjct: 61 AATRGVLHGNTASRKVSRLAQRVKAL 86

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 60/86 (69%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK +RKI RRT +NKSRRS +R+++R   EAI  G  E AT+A R AE ++ +
Sbjct: 1  MANTPSAKKAVRKIERRTAVNKSRRSQMRTYVRKVEEAIASGDREAATQALRAAEPLVMR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A  KGI H N ASRKVSRLS R+  +
Sbjct: 61 AAQKGIVHKNTASRKVSRLSARVSSL 86

Species: Methylocella silvestris
Genus: Methylocella
Family: Beijerinckiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 60/83 (72%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK  RKIARRT +N +RRS VR+F+R   EAI  G    ATEA R+AE  + +
Sbjct: 1  MANTPSAKKAARKIARRTAVNTARRSRVRTFLRRVEEAIASGDKNAATEAFRQAEPEMMR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRL 83
          A SKG+FH N ASRK+SRL++R+
Sbjct: 61 ASSKGVFHKNTASRKISRLAQRV 83

Species: Fulvimarina pelagi
Genus: Fulvimarina
Family: Aurantimonadaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 58/86 (67%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKKM RKIA+RT IN+SRRS +R+FMR   EAI  G    A  A R AE  I +
Sbjct: 1  MANTVSAKKMTRKIAKRTAINRSRRSRMRTFMRKVEEAIASGDAANALAALRSAEPEIMR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A  KGI H N ASRKVSRL+ R+K +
Sbjct: 61 ASQKGIVHKNTASRKVSRLAARVKAL 86

Species: Methylobacterium nodulans
Genus: Methylobacterium
Family: Methylobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK +RKIA RT INK+RRS VR+F+R  ++A+ FG  E A  A +  E  I +
Sbjct: 1  MANTPSAKKAVRKIAARTQINKARRSRVRTFIRKLDDALAFGDKEFAEVAFKNFEPEIMR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A SKG+ H N A+RKVSRL+KRLK +
Sbjct: 61 AVSKGVLHKNTAARKVSRLAKRLKAL 86

Species: Bartonella clarridgeiae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK  RKIARRT  NK+RRS VR+F+R   EAI  G    A+EA + A+  I +
Sbjct: 1  MANTPSAKKAARKIARRTATNKARRSRVRTFLRKVEEAIASGDQAAASEALKVAQPEIMR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A SKG+ H N ASRKVSRL+ R+K +
Sbjct: 61 AASKGVIHANTASRKVSRLNARVKAL 86

Species: Polymorphum gilvum
Genus: 
Family: 
Order: 
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 61/86 (70%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK +RKIA RT +NK+RRS VR+FMR  ++A+ +G    A  A +  E  I +
Sbjct: 1  MANTSSAKKAVRKIAVRTQVNKARRSRVRTFMRKLDDALAYGDKAFAEVAFKNFEPEIMR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A SKG+FH N A+RKVSRL+KRLK +
Sbjct: 61 AVSKGVFHKNTAARKVSRLAKRLKAL 86

Species: Bartonella sp. AR 15-3
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 59/86 (68%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK  RKIARRT +NK+RRS VR+F+R   EAI  G    A EA   A+  + +
Sbjct: 1  MANTSSAKKATRKIARRTEVNKARRSRVRTFVRQVEEAIASGDATLAKEAFLAAQPELAR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
          A +KG+ H N ASRKVSRL+KR+K +
Sbjct: 61 AATKGVLHANTASRKVSRLAKRVKAL 86

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 79.4 bits (197), Expect = 2e-16
 Identities = 41/88 (46%), Positives = 55/88 (62%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK IR+  +R L NKSR+S VR+ ++    AI  G  E A EA + A+S I K
Sbjct: 1  MANIKSAKKRIRQNEKRRLRNKSRKSRVRTAIKKVEAAIAAGDKEAAEEALKAAQSKIDK 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGILT 88
          A SKG+ H N A+RK SRL+ ++  +  
Sbjct: 61 AASKGVIHKNKAARKKSRLAAKVNALAA 88

Length = 88

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 37/83 (44%), Positives = 53/83 (63%)

Query: 2  ANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKA 61
          AN  SAKK IR+  +R L NKS +S +R+ ++   EAI  G+ ++A EA ++ +S I KA
Sbjct: 1  ANIKSAKKRIRQNEKRRLRNKSYKSKMRTLIKKVREAIEAGEKDKAKEALKEVQSKIDKA 60

Query: 62 KSKGIFHGNAASRKVSRLSKRLK 84
            KG+ H N A+RK SRL+  L 
Sbjct: 61 AKKGVIHKNTAARKKSRLAAILN 83

Bacterial ribosomal protein S20 interacts with 16S rRNA. Length = 84

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 33/87 (37%), Positives = 53/87 (60%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SA+K IR+  +R L N S++S +++ ++    AI  G  ++A EA ++A   + +
Sbjct: 1  MANIKSAEKRIRQNEKRRLHNASQKSKMKTIIKKVYAAIAAGDKDKAQEAFKEAAKKLDR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGIL 87
          A  KGI H N A+RK SRL+ +L  + 
Sbjct: 61 AARKGIIHKNKAARKKSRLAAQLNKLA 87

This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20. Length = 87

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKI-------EEATEACRK 53
          MAN  SA K I+   R  L NK+ +SSV++ ++   + +   K        ++  E    
Sbjct: 1  MANNKSAIKRIKISERNRLRNKAYKSSVKTLIKKYLKNLEDYKTSPNSNNKKKVQETLSS 60

Query: 54 AESVIQKAKSKGIFHGNAASRKVSRLSKRLK 84
            S I KA  KG+FH N A+RK S+L+K LK
Sbjct: 61 VYSKIDKAVKKGVFHKNTAARKKSKLAKALK 91

Length = 93

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 38/88 (43%), Positives = 54/88 (61%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK  R+  +R L NKSR+S++R+ ++    AI  G  E A  A ++A+  I K
Sbjct: 1  MANIKSAKKRARQSEKRRLRNKSRKSALRTAIKKVEAAIEAGDKEAAKAALKEAQKKIDK 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGILT 88
          A SKG+ H N A+RK SRL+ +L  +  
Sbjct: 61 AASKGVIHKNKAARKKSRLAAKLNKLAA 88

Length = 88

Probab=99.95  E-value=6.7e-28  Score=187.42  Aligned_cols=88  Identities=44%  Similarity=0.583  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
T Consensus         1 Man~kSA~Kr~rq~~krr~~N~~~ks~~kT~iKk~~~ai~~~d~~~a~~~~~~~~s~iDkaa~kgiihkN~AaRkKSrL~   80 (88)
T PRK00239          1 MANIKSAKKRIRQNEKRRLRNKSRKSRLRTAIKKVRAAIEAGDKEAAEEALKAAQSKLDKAASKGVIHKNKAARKKSRLA   80 (88)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99808889999999999999999999999999999999984899999999999999999998669876315889999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999842
Q gi|254780626|r   81 KRLKGILT   88 (90)
Q Consensus        81 ~~v~~~~~   88 (90)
T Consensus        81 k~ln~l~~   88 (88)
T PRK00239         81 AKVNALAA   88 (88)
T ss_pred             HHHHHHCC
T ss_conf             99977639

Probab=99.95  E-value=3.6e-27  Score=183.05  Aligned_cols=88  Identities=43%  Similarity=0.568  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
T Consensus         1 MAN~~SA~KR~r~~~krr~rN~~~kS~~rT~iKk~~~ai~~gd~~~A~~~l~~a~~~idkaa~KGvihkN~AaR~kSRLa   80 (88)
T COG0268           1 MANIKSAKKRARQSEKRRLRNKSRKSALRTAIKKVEAAIEAGDKEAAKAALKEAQKKIDKAASKGVIHKNKAARKKSRLA   80 (88)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99707789999999999998599999999999999999984779999999999999999998728634338888999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999842
Q gi|254780626|r   81 KRLKGILT   88 (90)
Q Consensus        81 ~~v~~~~~   88 (90)
T Consensus        81 ~~~~~~~~   88 (88)
T COG0268          81 AKLNKLAA   88 (88)
T ss_pred             HHHHHHCC
T ss_conf             99865349

Probab=99.94  E-value=1.2e-26  Score=179.79  Aligned_cols=84  Identities=44%  Similarity=0.576  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             68989999999999999999999999999999999999608989999999999999999986588616699999999999
Q gi|254780626|r    2 ANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSK   81 (90)
Q Consensus         2 an~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~   81 (90)
T Consensus         1 AN~kSA~KR~rq~~krr~~N~~~kS~~rT~iKkv~~ai~~gd~~~A~~~l~~a~~~iDkaa~KGiiHkN~AARkkSRL~~   80 (84)
T pfam01649         1 ANIKSAKKRIRQNEKRRLRNKSYKSKMRTLIKKVREAIEAGEKDKAKEALKEVQSKIDKAAKKGVIHKNTAARKKSRLAA   80 (84)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             97188999999999999999999999999999999999858999999999999999999974586643068889999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780626|r   82 RLKG   85 (90)
Q Consensus        82 ~v~~   85 (90)
T Consensus        81 ~vnK   84 (84)
T pfam01649        81 ILNK   84 (84)
T ss_pred             HHCC
T ss_conf             8629

Bacterial ribosomal protein S20 interacts with 16S rRNA.

Probab=99.93  E-value=1.1e-25  Score=174.10  Aligned_cols=86  Identities=35%  Similarity=0.370  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960-----8989999999999999999986588616699999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITF-----GKIEEATEACRKAESVIQKAKSKGIFHGNAASRK   75 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~-----~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRk   75 (90)
T Consensus         1 MAN~kSa~KRi~~~ErnRlrNkayKS~vrT~~Kk~~~a~e~~~~~~~~~~~~~~~l~~a~s~IDKAVkkGvlHkNtaArk   80 (93)
T CHL00102          1 MANNKSAIKRIQISERNRLRNRAYKSVVKTLTKKYLKDLENYKNSNNNKEKLQLLLSIVYSKIDKAVKKGVFHKNTAARK   80 (93)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             99708789999999999998799999999999999999998723898199999999999999999987288677608889


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999998
Q gi|254780626|r   76 VSRLSKRLKGI   86 (90)
Q Consensus        76 KSrL~~~v~~~   86 (90)
T Consensus        81 KSrLa~~~k~~   91 (93)
T CHL00102         81 KSKLAKALKIS   91 (93)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999998774

Probab=99.93  E-value=5.7e-26  Score=175.84  Aligned_cols=87  Identities=39%  Similarity=0.538  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898-------99999999999999999865886166999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKI-------EEATEACRKAESVIQKAKSKGIFHGNAAS   73 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~-------~~a~~~~~~~~s~lDka~kkgiihkn~As   73 (90)
T Consensus         1 maNiKSA~KR~~q~~kr~~~N~~~Ks~~kT~iK~~~~~v~~~~~dPnPekl~~A~~~~~~~~k~~D~~a~kgiihkN~Aa   80 (94)
T TIGR00029         1 MANIKSAEKRIRQNIKRRLRNKSYKSKLKTIIKKVYASVAAGEKDPNPEKLDKAQEALKEAAKKIDKAARKGIIHKNKAA   80 (94)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             97410367778887873104730555987899999999851267998423899999999987886189850730233476


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999984
Q gi|254780626|r   74 RKVSRLSKRLKGIL   87 (90)
Q Consensus        74 RkKSrL~~~v~~~~   87 (90)
T Consensus        81 R~KSrL~~~l~k~~   94 (94)
T TIGR00029        81 RKKSRLAAQLNKLA   94 (94)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             79999999986209

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 33/90 (36%), Positives = 54/90 (60%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
               SA K  R+  +R L NK+++S++++  + A +    GK EEA +  RKAES+I K
Sbjct: 6  PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDK 65

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGILTSA 90
          A      H NAA+R+ SRL ++++ +L +A
Sbjct: 66 AAKGSTLHKNAAARRKSRLMRKVRQLLEAA 95

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 24/84 (28%), Positives = 44/84 (52%)

Query: 3  NKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAK 62
          N  SAKK   +  +    N SRRS +R+F++    AI  G    A +A  + + ++ +  
Sbjct: 1  NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQA 60

Query: 63 SKGIFHGNAASRKVSRLSKRLKGI 86
          +KG+ H N A+R  + L+ ++  +
Sbjct: 61 AKGLIHKNKAARHKANLTAQINKL 84

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 1   MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGK---------IEEATEAC 51
               DSA K  R+  +R + NKS++S  R+ M+   EA+   K         I    +  
Sbjct: 84  TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLI 143

Query: 52  RKAESVIQKAKSKGIFHGNAASRKVSRLSKRLKGILTSA 90
            +A S I KA      H N  +R+ SRL++R K +    
Sbjct: 144 GEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHH 182

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK   +  +    N SRRS +R+F++    AI  G    A +A  + + ++ +
Sbjct: 1  MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
            +KG+ H N A+R  + L+ ++  +
Sbjct: 61 QAAKGLIHKNKAARHKANLTAQINKL 86

Probab=99.95  E-value=6e-28  Score=186.38  Aligned_cols=90  Identities=37%  Similarity=0.470  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
                      |+||+||+||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|+||||+
T Consensus         6 ~an~~SA~KRiRq~~krr~rN~~~kS~~kT~iKk~~~Ai~~~d~~~a~~~l~~a~s~iDKAa~KgviHkN~AaRkKSRL~   85 (106)
T 2vqe_T            6 PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLM   85 (106)
T ss_dssp             --CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSSCTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             67886289999999999999999999999999999999982789999999999999999998679876214889999999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999984269
Q gi|254780626|r   81 KRLKGILTSA   90 (90)
Q Consensus        81 ~~v~~~~~~A   90 (90)
                      ++|+++..++
T Consensus        86 k~vn~l~~~a   95 (106)
T 2vqe_T           86 RKVRQLLEAA   95 (106)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHH
T ss_conf             9999887400

Probab=99.93  E-value=4.3e-26  Score=175.27  Aligned_cols=85  Identities=28%  Similarity=0.429  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             89899999999999999999999999999999999996089899999999999999999865886166999999999999
Q gi|254780626|r    3 NKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSKR   82 (90)
Q Consensus         3 n~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~~   82 (90)
                      ||+||+||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|++|||++.
T Consensus         1 N~kSA~KR~rq~~krr~~N~~~kS~~kT~iKk~~~ai~~~d~~~a~~~~~~a~s~iDka~~kgiihkN~AaRkkSrL~k~   80 (85)
T 3ofo_T            1 NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQ   80 (85)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTSSTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             92888999999999999999999999999999999985388999999999999999999977987565799999999999


Q ss_pred             HHHHH
Q ss_conf             99984
Q gi|254780626|r   83 LKGIL   87 (90)
Q Consensus        83 v~~~~   87 (90)
                      |++++
T Consensus        81 ~~~ls   85 (85)
T 3ofo_T           81 INKLA   85 (85)
T ss_dssp             HTTCC
T ss_pred             HHHCC
T ss_conf             87509

Probab=99.91  E-value=1.3e-25  Score=172.30  Aligned_cols=89  Identities=31%  Similarity=0.375  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             96898999999999999999999999999999999999960---------898999999999999999998658861669
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITF---------GKIEEATEACRKAESVIQKAKSKGIFHGNA   71 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~---------~d~~~a~~~~~~~~s~lDka~kkgiihkn~   71 (90)
                      |.+.+||+||+||++++|++|++++|++||+||+|+++|+.         +|.++++++|..+++.||+++++||||+|+
T Consensus        84 ~~k~~SAkKRiRQneKRRlrNks~KS~vKTaIKKv~~AIeagkk~~~~~akD~eeA~k~l~~a~S~IDKAakKGIIHKNt  163 (202)
T 3bbn_T           84 TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNT  163 (202)
T ss_dssp             SCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCCSSSCCCHHHHHHHHHHHHHTTSSSSSSSCTTH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             77876279999999999999999999999999999999970444323110269999999999999999998669876204


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999998426
Q gi|254780626|r   72 ASRKVSRLSKRLKGILTS   89 (90)
Q Consensus        72 AsRkKSrL~~~v~~~~~~   89 (90)
                      |+|+||||+++|++|.-.
T Consensus       164 AARKKSRLaKkVKaLei~  181 (202)
T 3bbn_T          164 GARRKSRLARRKKAVEIH  181 (202)
T ss_dssp             HHHHHHHHTTHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             889999999999999997

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Ribosomal protein S20
family: Ribosomal protein S20
domain: Ribosomal protein S20
species: Thermus thermophilus [TaxId: 274]

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query: 6  SAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKG 65
          SA K  R+  +R L NK+++S++++  + A +    GK EEA +  RKAES+I KA    
Sbjct: 4  SALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGS 63

Query: 66 IFHGNAASRKVSRLSKRLKGILTSA 90
            H NAA+R+ SRL ++++ +L +A
Sbjct: 64 TLHKNAAARRKSRLMRKVRQLLEAA 88

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Ribosomal protein S20
family: Ribosomal protein S20
domain: Ribosomal protein S20
species: Escherichia coli [TaxId: 562]

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 23/81 (28%), Positives = 43/81 (53%)

Query: 6  SAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKG 65
          SAKK   +  +    N SRRS +R+F++    AI  G    A +A  + + ++ +  +KG
Sbjct: 2  SAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKG 61

Query: 66 IFHGNAASRKVSRLSKRLKGI 86
          + H N A+R  + L+ ++  +
Sbjct: 62 LIHKNKAARHKANLTAQINKL 82

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Ribosomal protein S20
family: Ribosomal protein S20
domain: Ribosomal protein S20
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=4e-26  Score=174.00  Aligned_cols=87  Identities=38%  Similarity=0.493  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             98999999999999999999999999999999999960898999999999999999998658861669999999999999
Q gi|254780626|r    4 KDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSKRL   83 (90)
Q Consensus         4 ~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~~v   83 (90)
                      |+||+||+||+++++++|++++|.|||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|++|||+++|
T Consensus         2 ~~SA~KRiRq~~krr~rN~~~kS~~kT~iKk~~~ai~~~d~e~A~~~l~~a~s~iDKAakKgiiHkN~AaRkKSRL~k~v   81 (99)
T d2uubt1           2 NLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKV   81 (99)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTSSTTCSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             76279999999999999999999999999999999872688999999999999999998679877114889999999999


Q ss_pred             HHHHHCC
Q ss_conf             9984269
Q gi|254780626|r   84 KGILTSA   90 (90)
Q Consensus        84 ~~~~~~A   90 (90)
                      +++.++|
T Consensus        82 ~~l~~~a   88 (99)
T d2uubt1          82 RQLLEAA   88 (99)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHH
T ss_conf             9987521

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Ribosomal protein S20
family: Ribosomal protein S20
domain: Ribosomal protein S20
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.1e-25  Score=167.98  Aligned_cols=83  Identities=28%  Similarity=0.433  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999999999999999999608989999999999999999986588616699999999999999
Q gi|254780626|r    5 DSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSKRLK   84 (90)
Q Consensus         5 kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~~v~   84 (90)
                      +||+||+||+++++.+|++++|.|||++|+|+.+|++||.+++.++|+.++|.||+++++||||+|+|+|++|||+++|+
T Consensus         1 KSA~Kr~rq~~kr~~~N~~~kS~~rT~iKk~~~ai~~~d~~~a~~~~~~a~s~iDkaa~KgiiHkN~AaRkkSRL~k~v~   80 (83)
T d2gy9t1           1 KSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQIN   80 (83)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             96478999999999999999999999999999998759999999999999999999987797656588899999999987


Q ss_pred             HHH
Q ss_conf             984
Q gi|254780626|r   85 GIL   87 (90)
Q Consensus        85 ~~~   87 (90)
                      +++
T Consensus        81 ~~s   83 (83)
T d2gy9t1          81 KLA   83 (83)
T ss_dssp             HHC
T ss_pred             HCC
T ss_conf             609

 Score = 77.0 bits (190), Expect = 8e-16
 Identities = 33/90 (36%), Positives = 54/90 (60%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
               SA K  R+  +R L NK+++S++++  + A +    GK EEA +  RKAES+I K
Sbjct: 6  PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDK 65

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGILTSA 90
          A      H NAA+R+ SRL ++++ +L +A
Sbjct: 66 AAKGSTLHKNAAARRKSRLMRKVRQLLEAA 95

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 26/86 (30%), Positives = 46/86 (53%)

Query: 1  MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60
          MAN  SAKK   +  +    N SRRS +R+F++    AI  G    A +A  + + ++ +
Sbjct: 1  MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR 60

Query: 61 AKSKGIFHGNAASRKVSRLSKRLKGI 86
            +KG+ H N A+R  + L+ ++  +
Sbjct: 61 QAAKGLIHKNKAARHKANLTAQINKL 86

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 1   MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGK---------IEEATEAC 51
               DSA K  R+  +R + NKS++S  R+ M+   EA+   K         I    +  
Sbjct: 84  TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLI 143

Query: 52  RKAESVIQKAKSKGIFHGNAASRKVSRLSKRLKGILTSA 90
            +A S I KA      H N  +R+ SRL++R K +    
Sbjct: 144 GEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHH 182

Probab=99.96  E-value=1.8e-28  Score=190.48  Aligned_cols=90  Identities=37%  Similarity=0.470  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
                      ||||+|++||+||++++|++|++++|++||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|+||||+
T Consensus         6 MaN~kSA~KRir~~~krr~rNr~~kS~ikT~iKk~~~Ai~~~d~~~a~~~l~~a~s~iDkaa~KGiiHkN~AaRkKSRL~   85 (106)
T 2vqe_T            6 PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLM   85 (106)
T ss_dssp             --CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSSCTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             78986189999999999999999999999999999999872789999999999999999998679876013889999999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999984269
Q gi|254780626|r   81 KRLKGILTSA   90 (90)
Q Consensus        81 ~~v~~~~~~A   90 (90)
                      ..|+++..+|
T Consensus        86 ~~in~~~~~a   95 (106)
T 2vqe_T           86 RKVRQLLEAA   95 (106)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHH
T ss_conf             9999998631

Probab=99.95  E-value=5.8e-28  Score=187.41  Aligned_cols=87  Identities=30%  Similarity=0.445  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS   80 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~   80 (90)
                      ||||+|++||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.++|.||+++++||||+|+|+|++|||+
T Consensus         1 MaN~kSa~KR~r~~~krr~~N~~~kS~~kT~iKk~~~ai~~~d~~~a~~~l~~a~s~iDkaa~KgviHkN~AaRkKSRL~   80 (87)
T 3i1m_T            1 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLT   80 (87)
T ss_dssp             --CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99818899999999999999999999999999999999983888999999999999999999769766668889999999


Q ss_pred             HHHHHHH
Q ss_conf             9999984
Q gi|254780626|r   81 KRLKGIL   87 (90)
Q Consensus        81 ~~v~~~~   87 (90)
                      +.++++.
T Consensus        81 ~~~n~~a   87 (87)
T 3i1m_T           81 AQINKLA   87 (87)
T ss_dssp             HHHTTCC
T ss_pred             HHHHHCC
T ss_conf             9987609

Probab=99.94  E-value=3.9e-28  Score=188.41  Aligned_cols=90  Identities=31%  Similarity=0.351  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             968989999999999999999999999999999999999608---------98999999999999999998658861669
Q gi|254780626|r    1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFG---------KIEEATEACRKAESVIQKAKSKGIFHGNA   71 (90)
Q Consensus         1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~---------d~~~a~~~~~~~~s~lDka~kkgiihkn~   71 (90)
                      ||||+|++||+||++++|++|++++|++||++|+|+++|++|         |.++++++|.++|+.||++++|||||+|+
T Consensus        84 MaN~KSA~KRiRqseKRRlrNka~KS~iKT~iKKv~~AIeag~k~~~~~~~d~e~A~~ll~~a~s~IDKAakKGvIHKNt  163 (202)
T 3bbn_T           84 TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNT  163 (202)
T ss_dssp             SCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCCSSSCCCHHHHHHHHHHHHHTTSSSSSSSCTTH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             76876389999999999999999999999999999999972564434331029999999999999999998569766105


Q ss_pred             HHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999984269
Q gi|254780626|r   72 ASRKVSRLSKRLKGILTSA   90 (90)
Q Consensus        72 AsRkKSrL~~~v~~~~~~A   90 (90)
                      |+|+||||++++|++..++
T Consensus       164 AARkKSRLak~vk~l~~~a  182 (202)
T 3bbn_T          164 GARRKSRLARRKKAVEIHH  182 (202)
T ss_dssp             HHHHHHHHTTHHHHSSCC-
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             8899999999999999974