254780646

254780646

50S ribosomal protein L21

GeneID in NCBI database:8209648Locus tag:CLIBASIA_02665
Protein GI in NCBI database:254780646Protein Accession:YP_003065059.1
Gene range:-(625207, 625518)Protein Length:103aa
Gene description:50S ribosomal protein L21
COG prediction:[J] Ribosomal protein L21
KEGG prediction:rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SEED prediction:LSU ribosomal protein L21p
Pathway involved in KEGG:Ribosome [PATH:las03010]
Subsystem involved in SEED:Ribosome LSU bacterial;
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT
cEEEEEEccEEEEEccccEEEEEEEccccccEEEEEEEEEEEccccEEEccEEEcccEEEEEEEEEccccEEEEEEEcccccccEEccccccEEEEEEEEEEc
cEEEEEEcccEEEEEcccEEEEEEEEcccccEEEEcEEEEEEccccEEEccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEEEcc
mfaiiehggkqsrvsatdTITVEKIVakdgdnirfdnvlavgkdehlsvgtprvegAYVEAEVVKQLRTKKVVVFKKrrrqnyrrthghrqeMTVVRITSIVT
mfaiiehggkqsrvsatdtITVEkivakdgdnirfDNVLavgkdehlsvgtprvegayveaevvkqlrtkkvvvfkkrrrqnyrrthghrqemtvvritsivt
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLrtkkvvvfkkrrrQNYRRTHGHRQEMTVVRITSIVT
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNY**THGHRQEMTVVRITSIVT
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYR*THGHRQEMTVVRITSIVT
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MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT
MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
315122168103 50S ribosomal protein L21 [Candidatus Liberibacter sola 1 2e-43
86359640105 50S ribosomal protein L21 [Rhizobium etli CFN 42] Lengt 1 2e-25
163761369 216 ribosomal protein L21 [Hoeflea phototrophica DFL-43] Le 1 3e-25
190893914105 50S ribosomal protein L21 [Rhizobium etli CIAT 652] Len 1 4e-25
116254400105 50S ribosomal protein L21 [Rhizobium leguminosarum bv. 1 5e-25
218462944105 50S ribosomal protein L21 [Rhizobium etli Kim 5] Length 1 8e-25
241206877105 50S ribosomal protein L21 [Rhizobium leguminosarum bv. 1 1e-24
319408128158 50S ribosomal protein L21 [Bartonella schoenbuchensis R 1 7e-24
239832936196 ribosomal protein L21 [Ochrobactrum intermedium LMG 330 1 8e-24
161619769142 50S ribosomal protein L21 [Brucella canis ATCC 23365] L 1 9e-24
>gi|315122168|ref|YP_004062657.1| 50S ribosomal protein L21 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 103 Back     alignment and organism information
 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 96/102 (94%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           MFAII+HGGKQ RV+ATDTITVEKIVA+DGDNIRFDNVLA+G D+ LS+GTP VEGAYVE
Sbjct: 1   MFAIIKHGGKQRRVAATDTITVEKIVAQDGDNIRFDNVLAIGNDQSLSIGTPCVEGAYVE 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102
           AEV+KQLRTKKV++FKKRRRQN +RT GHRQEMT+VRIT+IV
Sbjct: 61  AEVIKQLRTKKVIIFKKRRRQNSKRTQGHRQEMTMVRITNIV 102


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|86359640|ref|YP_471532.1| 50S ribosomal protein L21 [Rhizobium etli CFN 42] Length = 105 Back     alignment and organism information
>gi|163761369|ref|ZP_02168443.1| ribosomal protein L21 [Hoeflea phototrophica DFL-43] Length = 216 Back     alignment and organism information
>gi|190893914|ref|YP_001980456.1| 50S ribosomal protein L21 [Rhizobium etli CIAT 652] Length = 105 Back     alignment and organism information
>gi|116254400|ref|YP_770238.1| 50S ribosomal protein L21 [Rhizobium leguminosarum bv. viciae 3841] Length = 105 Back     alignment and organism information
>gi|218462944|ref|ZP_03503035.1| 50S ribosomal protein L21 [Rhizobium etli Kim 5] Length = 105 Back     alignment and organism information
>gi|241206877|ref|YP_002977973.1| 50S ribosomal protein L21 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 105 Back     alignment and organism information
>gi|319408128|emb|CBI81781.1| 50S ribosomal protein L21 [Bartonella schoenbuchensis R1] Length = 158 Back     alignment and organism information
>gi|239832936|ref|ZP_04681265.1| ribosomal protein L21 [Ochrobactrum intermedium LMG 3301] Length = 196 Back     alignment and organism information
>gi|161619769|ref|YP_001593656.1| 50S ribosomal protein L21 [Brucella canis ATCC 23365] Length = 142 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
PRK05573103 PRK05573, rplU, 50S ribosomal protein L21; Validated 9e-34
PRK12278 221 PRK12278, PRK12278, 50S ribosomal protein L21/unknown d 8e-32
COG0261103 COG0261, RplU, Ribosomal protein L21 [Translation, ribo 2e-26
TIGR00061101 TIGR00061, L21, ribosomal protein L21 3e-22
CHL00075108 CHL00075, rpl21, ribosomal protein L21 1e-14
KOG1686151 KOG1686, KOG1686, KOG1686, Mitochondrial/chloroplast ri 2e-14
pfam0082996 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 pr 9e-28
>gnl|CDD|180138 PRK05573, rplU, 50S ribosomal protein L21; Validated Back     alignment and domain information
>gnl|CDD|171362 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|30610 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21 Back     alignment and domain information
>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21 Back     alignment and domain information
>gnl|CDD|36899 KOG1686, KOG1686, KOG1686, Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144428 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 103 50S ribosomal protein L21 [Candidatus Liberibacter asia
CHL00075110 rpl21 ribosomal protein L21 100.0
PRK05573103 rplU 50S ribosomal protein L21; Validated 100.0
PRK12278 216 50S ribosomal protein L21/unknown domain fusion protein 100.0
COG0261103 RplU Ribosomal protein L21 [Translation, ribosomal stru 100.0
TIGR00061101 L21 ribosomal protein L21; InterPro: IPR001787 Ribosome 100.0
pfam0082996 Ribosomal_L21p Ribosomal prokaryotic L21 protein. 100.0
KOG1686151 consensus 99.9
>CHL00075 rpl21 ribosomal protein L21 Back     alignment and domain information
>PRK05573 rplU 50S ribosomal protein L21; Validated Back     alignment and domain information
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional Back     alignment and domain information
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00061 L21 ribosomal protein L21; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>pfam00829 Ribosomal_L21p Ribosomal prokaryotic L21 protein Back     alignment and domain information
>KOG1686 consensus Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
2j01_V101 Structure Of The Thermus Thermophilus 70s Ribosome 6e-26
2aw4_R103 Crystal Structure Of The Bacterial Ribosome From Es 5e-24
1nkw_P100 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-22
3bbo_T257 Homology Model For The Spinach Chloroplast 50s Subu 1e-17
gi|116668253|pdb|2J01|V Chain V, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 101 Back     alignment and structure
 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           MFAI++ GGKQ RV     + VEK+ A+ G  +    +L     E   VGTP VEGA V 
Sbjct: 1   MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLL--GGEKTVVGTPVVEGASVV 58

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
           AEV+   R KK++V K + +  YRR  GHRQ  T + I  I
Sbjct: 59  AEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEI 99


gi|83754078|pdb|2AW4|R Chain R, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 103 Back     alignment and structure
gi|28948935|pdb|1NKW|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 100 Back     alignment and structure
>gi|189096142|pdb|3BBO|T Chain T, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
3bbo_T257 Ribosomal protein L21; large ribosomal subunit, spinach 9e-33
3ofq_R103 50S ribosomal protein L21; protein biosynthesis, riboso 3e-28
3i1n_R103 50S ribosomal protein L21; ribosome structure, protein- 1e-25
2zjr_O100 50S ribosomal protein L21; ribosome, large ribosomal su 3e-23
2j01_V101 50S ribosomal protein L21; ribosome, tRNA, paromomycin, 1e-22
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257 Back     alignment and structure
 Score =  133 bits (336), Expect = 9e-33
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKI-VAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYV 59
           +FA++  G +Q  V     I  +++  A   D I  + VL VG      +GTP V  A V
Sbjct: 124 IFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAV 183

Query: 60  EAEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
            A V +QL   KV+VFK ++++NYRR  GHRQ +T ++IT I
Sbjct: 184 HAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGI 225


>3ofq_R 50S ribosomal protein L21; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Length = 103 Back     alignment and structure
>3i1n_R 50S ribosomal protein L21; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_R 2aw4_R 2awb_R 1vs6_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R 2vhm_R ... Length = 103 Back     alignment and structure
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* Length = 100 Back     alignment and structure
>2j01_V 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.155.1.1 PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 3d5b_V 3d5d_V 3f1f_V 3f1h_V ... Length = 101 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
3ofq_R103 50S ribosomal protein L21; protein biosynthesis, riboso 100.0
3bbo_T257 Ribosomal protein L21; large ribosomal subunit, spinach 100.0
2j01_V101 50S ribosomal protein L21; ribosome, tRNA, paromomycin, 100.0
2zjr_O100 50S ribosomal protein L21; ribosome, large ribosomal su 100.0
2out_A131 MU-like prophage flumu protein GP35, protein HI1507 in 98.65
>3ofq_R 50S ribosomal protein L21; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Back     alignment and structure
Probab=100.00  E-value=8.7e-43  Score=258.35  Aligned_cols=103  Identities=42%  Similarity=0.700  Sum_probs=101.8

Q ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf             96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r    1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR   80 (103)
Q Consensus         1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR   80 (103)
                      |||||++||+||||++||+|.+|++++++||+++|++|||+++++++.+|+|+|+||+|+|+|++|.||+||++||||||
T Consensus         1 MyAIi~~gGkQykV~~gd~l~v~~l~~~~G~~i~l~~VLl~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krr   80 (103)
T 3ofq_R            1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRR   80 (103)
T ss_dssp             CCCCEECSSSEECCCSSCCEEEECCSCCTTCEEEECCBSCCCTTSCCCCSSSSCSSCEEEEEEEEEEECCCCCEECCBTT
T ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCEEEEHHHEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
T ss_conf             99999979999999389999993568899999997454691699847989855467699999974057872189996387


Q ss_pred             CCCEEECCCCCCCEEEEEEEEEC
Q ss_conf             87166427457600999967619
Q gi|254780646|r   81 QNYRRTHGHRQEMTVVRITSIVT  103 (103)
Q Consensus        81 K~yrr~~GhRq~~T~ikI~~I~s  103 (103)
                      |||+|++||||+||+|+|++|.+
T Consensus        81 k~y~r~~GHRQ~~T~ikI~~I~a  103 (103)
T 3ofq_R           81 KHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             TTBCCEECCCCEEEEECCCEEEC
T ss_pred             CCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             77342576378827999998879



>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2j01_V 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.155.1.1 PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ... Back     alignment and structure
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* Back     alignment and structure
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1 Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 103 50S ribosomal protein L21 [Candidatus Liberibacter asia
d2qamr1103 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia 1e-26
d2j01v1101 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus the 2e-24
d2zjro194 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus 2e-20
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Length = 103 Back     information, alignment and structure

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]
 Score =  112 bits (281), Expect = 1e-26
 Identities = 43/101 (42%), Positives = 63/101 (62%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           M+A+ + GGKQ RVS   T+ +EK+    G+ + F  VL +   E + +G P V+G  ++
Sbjct: 1   MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
           AEVV   R +KV + K RRR++YR+  GHRQ  T V+IT I
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101


>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Length = 101 Back     information, alignment and structure
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Length = 94 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
d2qamr1103 Ribosomal protein L21p {Escherichia coli [TaxId: 562]} 100.0
d2j01v1101 Ribosomal protein L21p {Thermus thermophilus [TaxId: 27 100.0
d2zjro194 Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 100.0
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]
Probab=100.00  E-value=5.7e-43  Score=258.02  Aligned_cols=103  Identities=42%  Similarity=0.700  Sum_probs=101.7

Q ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf             96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r    1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR   80 (103)
Q Consensus         1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR   80 (103)
                      |||||++||+||||++||+|.+|++++++||+++|++|||+++++++.+|+|+|+||+|+|+|++|.+|+|+++||||||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~l~~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krr   80 (103)
T d2qamr1           1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRR   80 (103)
T ss_dssp             CCCCCCSSSSCCCCCSSCCEEESCCCCCTTCEEEECCCSCCCSSSCCCCSSSSCSSCCEEEEEEEEECCCCEEEEEECTT
T ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEEHHHEECCCCCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf             98999979999999389999996467788871880462482789827808975236289999953047760899996387


Q ss_pred             CCCEEECCCCCCCEEEEEEEEEC
Q ss_conf             87166427457600999967619
Q gi|254780646|r   81 QNYRRTHGHRQEMTVVRITSIVT  103 (103)
Q Consensus        81 K~yrr~~GhRq~~T~ikI~~I~s  103 (103)
                      |+|+|++||||+||+|+|++|.+
T Consensus        81 k~yrr~~GHRQ~~T~i~I~~I~a  103 (103)
T d2qamr1          81 KHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             SSCEEEEEECCCEEEECCCCCCC
T ss_pred             CCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             76324685448728999988869



>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 103 50S ribosomal protein L21 [Candidatus Liberibacter
3i1n_R_103 (R:) 50S ribosomal protein L21; ribosome structure 1e-28
3bbo_T_257 (T:) Ribosomal protein L21; large ribosomal subuni 7e-28
2zjr_O_100 (O:) 50S ribosomal protein L21; ribosome, large ri 9e-26
2j01_V_1-66_94-10174 (V:1-66,V:94-101) 50S ribosomal protein L21; ribos 5e-15
>3i1n_R (R:) 50S ribosomal protein L21; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_R 2aw4_R 2awb_R 1vs6_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R 2vhm_R ...Length = 103 Back     alignment and structure
 Score =  119 bits (300), Expect = 1e-28
 Identities = 43/101 (42%), Positives = 63/101 (62%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           M+A+ + GGKQ RVS   T+ +EK+    G+ + F  VL +   E + +G P V+G  ++
Sbjct: 1   MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIK 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSI 101
           AEVV   R +KV + K RRR++YR+  GHRQ  T V+IT I
Sbjct: 61  AEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101


>3bbo_T (T:) Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 257 Back     alignment and structure
>2zjr_O (O:) 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 100 Back     alignment and structure
>2j01_V (V:1-66,V:94-101) 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 74 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target103 50S ribosomal protein L21 [Candidatus Liberibacter asia
3i1n_R_103 50S ribosomal protein L21; ribosome structure, pro 100.0
3bbo_T_257 Ribosomal protein L21; large ribosomal subunit, sp 100.0
2zjr_O_100 50S ribosomal protein L21; ribosome, large ribosom 100.0
2j01_V_1-66_94-10174 50S ribosomal protein L21; ribosome, tRNA, paromom 99.84
2j01_V_67-9327 50S ribosomal protein L21; ribosome, tRNA, paromom 97.01
>3i1n_R (R:) 50S ribosomal protein L21; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_R 2aw4_R 2awb_R 1vs6_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R 2vhm_R ... Back     alignment and structure
Probab=100.00  E-value=2.9e-41  Score=250.70  Aligned_cols=103  Identities=42%  Similarity=0.700  Sum_probs=101.9

Q ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf             96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r    1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR   80 (103)
Q Consensus         1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR   80 (103)
                      |||||++||+||||++||.|.+|++++++||.++|++|||+++++++.+|+|+|++|+|+|+|++|.+++|+++||||||
T Consensus         1 myAIi~~ggkQykV~~Gd~i~v~~l~~~~Gd~i~l~~Vl~v~~~~~~~iG~P~l~~~~V~a~V~~~~k~~Ki~v~K~krr   80 (103)
T 3i1n_R            1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRR   80 (103)
T ss_dssp             CEEEECCSSSCCEEETTCCEEESCCCSCTTCEEEECCEEEEESSSCEECSSSSCTTCBEEEEEEEEEECCCEEEEEEETT
T ss_pred             CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEECCCCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf             98999979999999389999996467788870882550480279817855975456389999953047762899996386


Q ss_pred             CCCEEECCCCCCCEEEEEEEEEC
Q ss_conf             87166427457600999967619
Q gi|254780646|r   81 QNYRRTHGHRQEMTVVRITSIVT  103 (103)
Q Consensus        81 K~yrr~~GhRq~~T~ikI~~I~s  103 (103)
                      |+|+|++||||+||+|+|++|.+
T Consensus        81 K~~~R~~GhRq~~T~irI~~I~a  103 (103)
T 3i1n_R           81 KHYRKQQGHRQWFTDVKITGISA  103 (103)
T ss_dssp             TTEEEEEEECCEEEEECCCCCBC
T ss_pred             CCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             76334685358717999988869



>3bbo_T (T:) Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zjr_O (O:) 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} Back     alignment and structure
>2j01_V (V:1-66,V:94-101) 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} Back     alignment and structure
>2j01_V (V:67-93) 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} Back     alignment and structure