254780666
Fmu (Sun) domain protein
| GeneID in NCBI database: | 8209670 | Locus tag: | CLIBASIA_02765 |
| Protein GI in NCBI database: | 254780666 | Protein Accession: | YP_003065079.1 |
| Gene range: | +(601032, 602369) | Protein Length: | 445aa |
| Gene description: | Fmu (Sun) domain protein | ||
| COG prediction: | [J] tRNA and rRNA cytosine-C5-methylases | ||
| KEGG prediction: | Fmu (Sun) domain protein; K03500 ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-] | ||
| SEED prediction: | 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | Conserved gene cluster associated with Met-tRNA formyltransferase | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 445 | Fmu (Sun) domain protein [Candidatus Liberibacter asiat | |||
| 254780634 | 429 | NOL1/NOP2/SUN family signature protein [Candidatus | 6e-20 |
| >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 | Back alignment |
|---|
Score = 90.1 bits (222), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKR 274
F G + +QD + I L N+ +LD CA GGKT + L+ + ++ A D +K
Sbjct: 208 FQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKS 267
Query: 275 RLEKLRCNLDR-------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327
R+ + + R LH E + + ++ F VLVDAPCS TGT RR PD
Sbjct: 268 RMAPIVARIKRAGIHNVQLHSSWESLRNL-------QEHFTTVLVDAPCSGTGTWRRRPD 320
Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
+ W ++++ Q+K+L + FV+P G +V+ CS+ +++ + + L +P
Sbjct: 321 IKWRLSQKNLIERTEEQKKILEESAQFVRPEGYLVYITCSILPEENIQQINYFLSKNP 378
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 445 | Fmu (Sun) domain protein [Candidatus Liberibacter asiat | |||
| 315122151 | 443 | Fmu (Sun) domain protein [Candidatus Liberibacter solan | 1 | 0.0 | |
| 209551488 | 462 | Fmu (Sun) domain protein [Rhizobium leguminosarum bv. t | 1 | 1e-125 | |
| 86359687 | 464 | RNA methyltransferase - sun protein [Rhizobium etli CFN | 1 | 1e-124 | |
| 116254448 | 460 | ribosomal RNA small subunit methyltransferase B [Rhizob | 1 | 1e-124 | |
| 218460752 | 466 | RNA methyltransferase - sun protein [Rhizobium etli Kim | 1 | 1e-123 | |
| 222087916 | 469 | tRNA and rRNA cytosine-C5-methylase (RNA methyltransfer | 1 | 1e-123 | |
| 241206925 | 460 | Fmu (Sun) domain protein [Rhizobium leguminosarum bv. t | 1 | 1e-122 | |
| 150398383 | 470 | Fmu (Sun) domain-containing protein [Sinorhizobium medi | 1 | 1e-121 | |
| 227823840 | 473 | Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] | 1 | 1e-120 | |
| 325294195 | 461 | SUN protein [Agrobacterium sp. H13-3] Length = 461 | 1 | 1e-120 |
| >gi|315122151|ref|YP_004062640.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 443 | Back alignment and organism information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/442 (78%), Positives = 393/442 (88%), Gaps = 2/442 (0%)
Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
MKSGMNARLV++HLLSCV RKRISLTCLLD E GD AFR LS +DQ LVRAI++ TLRFL
Sbjct: 1 MKSGMNARLVAAHLLSCVTRKRISLTCLLDPERGDIAFRKLSHKDQALVRAILSTTLRFL 60
Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
PRIDAVLD +L+SSL +KK SL+QL R+S+AQILYLDVADYAVVDLAVEQAKRD+ENRHF
Sbjct: 61 PRIDAVLDLLLVSSLSKKKQSLRQLFRISIAQILYLDVADYAVVDLAVEQAKRDQENRHF 120
Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
+ LVNSILRRVSREK ELLQR + IS+IP+WFK+RLE+FYGKE IS AC++P Y+DL
Sbjct: 121 SNLVNSILRRVSREKTELLQRFSSISVIPQWFKKRLEDFYGKESTYCISQACLTPSYVDL 180
Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
TVK DIE WA+KLNAV+LPTGGIRL+E S+ SLPGFAEGVWWVQDASASIPVQLFG L
Sbjct: 181 TVKSDIEIWANKLNAVVLPTGGIRLREFRGSVSSLPGFAEGVWWVQDASASIPVQLFGPL 240
Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
N LSVLDLCAAPGGKTAQLI+SGAKVTALD+S RLEKL+ NL+RL L A++IIE DAFD
Sbjct: 241 NGLSVLDLCAAPGGKTAQLILSGAKVTALDISNNRLEKLQHNLNRLRLCADNIIEGDAFD 300
Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
Y PKKLFDAVLVDAPCSSTGT+RRHPDVLWTRD +DIV+SACFQ +LLL G++ VKPGGI
Sbjct: 301 YRPKKLFDAVLVDAPCSSTGTMRRHPDVLWTRDAEDIVRSACFQERLLLHGLALVKPGGI 360
Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
VVFSNCSLDKQDSE+VV+KVLRSS IPVE++ LN+A W +MAMA++PEGW+RITPDML
Sbjct: 361 VVFSNCSLDKQDSEDVVRKVLRSSLIPVEIMSLNNASWN--NMAMAITPEGWLRITPDML 418
Query: 421 EKIDGVSSGMDGFFAVALRRLI 442
+I+GV SGMDGFFAVALRRLI
Sbjct: 419 GEIEGVPSGMDGFFAVALRRLI 440
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209551488|ref|YP_002283405.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 462 | Back alignment and organism information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/441 (51%), Positives = 303/441 (68%), Gaps = 4/441 (0%)
Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
+K G+ AR ++ +L V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR L
Sbjct: 25 VKPGLQARAAAAKILGAVVERKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHL 84
Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
PRIDA + +L S LP +LQ +L + VAQILYLDV D++ VDLAVEQA +D NR F
Sbjct: 85 PRIDAAISSLLESPLPEGARALQHVLAIGVAQILYLDVPDHSAVDLAVEQANQDPRNRRF 144
Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
AKLVN++LRR+ REK E+L I ++ +P WF RLE YG++ LAIS++ + P IDL
Sbjct: 145 AKLVNAVLRRLGREKDEVLGEIDKVAPMPAWFIARLEKAYGRDAALAISESQLQPAAIDL 204
Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
TVK D E WA +LN V+LPTGG+RL I SL GF +G WWVQDA+ASIP +LFG L
Sbjct: 205 TVKSDAEGWAKRLNGVVLPTGGVRLAAFDGGIPSLEGFDDGAWWVQDAAASIPAKLFGDL 264
Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
+ DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE I D
Sbjct: 265 SGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRRLRSNLDRLSLKAE-TIAADLTT 323
Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
+ P + FDA+L+DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL ++ +KP G
Sbjct: 324 FEPAERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIGRLAALQERLLRHALTLLKPDGT 383
Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
+VFSNCSLD + EEVV +VL + +E V +++ W ++ A++P G R P ML
Sbjct: 384 LVFSNCSLDPTEGEEVVARVLADTD-GIERVRIDAGDWPGLE--AAITPLGEFRTLPTML 440
Query: 421 EKIDGVSSGMDGFFAVALRRL 441
+ DG++SG+DGF+A LRR+
Sbjct: 441 KMPDGIASGLDGFYAAMLRRV 461
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86359687|ref|YP_471579.1| RNA methyltransferase - sun protein [Rhizobium etli CFN 42] Length = 464 | Back alignment and organism information |
|---|
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/440 (52%), Positives = 300/440 (68%), Gaps = 4/440 (0%)
Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
+K G+ AR ++ +L+ V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR L
Sbjct: 27 LKPGLQARAAAAKILAAVVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHL 86
Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
PRIDA + +L S LP +L +L + AQILYLDV D++ VDLAVEQA +D NR F
Sbjct: 87 PRIDAAIASLLESPLPEGARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRF 146
Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
AKLVN++LRR+ REK E+L RI ++ +P WF RLE YG++ LAIS + + P IDL
Sbjct: 147 AKLVNAVLRRLGREKDEVLARIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAIDL 206
Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
TVK D E WA +LN V LPTGG+RL I SL GF EG WWVQDA+ASIP +LFG L
Sbjct: 207 TVKSDAEGWAKRLNGVALPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDL 266
Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
+ DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE + D
Sbjct: 267 SGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRRLRSNLDRLALKAE-TVAADLMT 325
Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
+ P + FDA+L+DAPCSSTGT RRHPDVLWT+ DDI + A Q +LL ++ +KP G
Sbjct: 326 FKPSEGFDAILLDAPCSSTGTTRRHPDVLWTKGPDDIARLAALQERLLRHALTLLKPLGT 385
Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
+VFSNCSLD + EEVV +VL S +E V +N+ W ++ A++P G R P ML
Sbjct: 386 LVFSNCSLDPAEGEEVVARVL-SDTNAIERVAINAGDWPGLE--AAITPLGEFRTLPTML 442
Query: 421 EKIDGVSSGMDGFFAVALRR 440
+ DG++SG+DGF+A LRR
Sbjct: 443 KMPDGIASGLDGFYAAVLRR 462
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460 | Back alignment and organism information |
|---|
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/440 (52%), Positives = 300/440 (68%), Gaps = 4/440 (0%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G+ AR ++ +L+ V+ +++ L LD E+G+ A+R L + D+ LVRAI+N TLR LP
Sbjct: 24 KLGLQARAAAAKILAAVVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLP 83
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RIDA + +L S LP +L +L + AQILYLDV D++ VDLAVEQA +D NR FA
Sbjct: 84 RIDAAIAGLLDSPLPEGARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFA 143
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
KLVN+ILRR+ REK ++L I ++ +P WF RLE YG++ LAIS++ + P IDLT
Sbjct: 144 KLVNAILRRLGREKEQVLADIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLT 203
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK D E WA +LN V+LPTGGIRL I SL GF EG WWVQDA+ASIP +LFG L
Sbjct: 204 VKSDPEGWAKRLNGVVLPTGGIRLAAFDGGIPSLEGFDEGAWWVQDAAASIPAKLFGDLA 263
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE I D +
Sbjct: 264 GKRTADLCAAPGGKTAQLILAGGAVTALDQSENRLRRLRSNLDRLGLKAE-TIAADLTTF 322
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P + FDA+L+DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL ++ +KPGG +
Sbjct: 323 GPTERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTL 382
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD + E+VV +VL S VE VP+ + W ++ A++P G R P ML+
Sbjct: 383 VFSNCSLDPVEGEDVVARVL-SDTDAVERVPIGAGDWPGLE--AAITPLGEFRTLPTMLK 439
Query: 422 KIDGVSSGMDGFFAVALRRL 441
DG+ SG+DGF+A LRRL
Sbjct: 440 MPDGIGSGLDGFYAAVLRRL 459
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|218460752|ref|ZP_03500843.1| RNA methyltransferase - sun protein [Rhizobium etli Kim 5] Length = 466 | Back alignment and organism information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/440 (51%), Positives = 299/440 (67%), Gaps = 4/440 (0%)
Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
+K G+ AR ++ +L+ V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR L
Sbjct: 29 VKPGLQARAAAAKILAAVVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHL 88
Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120
PRIDA + +L S LP +L +L + AQILYLDV D++ VDLAVEQA +D NR F
Sbjct: 89 PRIDAAIASLLESPLPEGARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRF 148
Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180
AKLVN++LRR+ REK E+L I ++ +P WF RLE YG+E LAIS + + P IDL
Sbjct: 149 AKLVNAVLRRLGREKEEVLAEIGKVAPMPSWFLARLEKAYGREAALAISQSQLEPAAIDL 208
Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240
TVK D E WA +LN V LPTGG+RL I SL GF EG WWVQDA+ASIP +LFG L
Sbjct: 209 TVKSDAEGWAKRLNGVALPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDL 268
Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300
DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE + D
Sbjct: 269 AGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRRLRSNLDRLGLTAE-TVAADLTT 327
Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360
+ P + FDA+L+DAPCSSTGT RRHPDVLWT+ DDI + A Q +LL ++ + P G+
Sbjct: 328 FKPPEGFDAILLDAPCSSTGTTRRHPDVLWTKGPDDIARLAALQERLLRHALTLLTPFGM 387
Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420
+VFSNCSLD + EEVV +VL S +E VP+N+ W ++ A++P G R P ML
Sbjct: 388 LVFSNCSLDPAEGEEVVARVL-SDTDAIERVPINAGDWPGLE--AAITPLGEFRTLPTML 444
Query: 421 EKIDGVSSGMDGFFAVALRR 440
+ +G++SG+DGF+A LRR
Sbjct: 445 KMPEGIASGLDGFYAAVLRR 464
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222087916|ref|YP_002546454.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] Length = 469 | Back alignment and organism information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/439 (52%), Positives = 298/439 (67%), Gaps = 4/439 (0%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G AR ++ +LS V+ ++ L +LD E G+ A++ L D+ LVRAI+N LR LP
Sbjct: 33 KPGFAARAAAAKILSAVIDRKTPLDGMLDAEGGNPAYKALGDSDRALVRAILNSALRHLP 92
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RI+A + +L S LP +L +L V AQ+LYLDV D++ VD+AVEQA +D NR FA
Sbjct: 93 RIEAAIASLLDSPLPEGARALHHVLVVGAAQMLYLDVPDHSAVDIAVEQANQDPRNRRFA 152
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
KLVN+ILRR+ REK ++L + A + +P+WF RLE YG++ L ISD + P ID+T
Sbjct: 153 KLVNAILRRIGREKQDILSQGADVPAMPKWFLTRLEAAYGRQAALKISDTQLEPAAIDVT 212
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK D E WA +LN V+LPTGG+RL SI SL GFA+G WWVQDA+ASIP +LFG+L
Sbjct: 213 VKSDAEGWAKRLNGVVLPTGGVRLAAFEGSIPSLDGFADGEWWVQDAAASIPAKLFGSLA 272
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
V+DLCAAPGGKTAQLI++G KVTALD S RL++L NL RL L AE ++ D +
Sbjct: 273 GQRVVDLCAAPGGKTAQLILAGGKVTALDQSANRLKRLSGNLARLGLEAETVV-ADMAKF 331
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P LFDA L+DAPCSSTGT RRHPDVLWT+ +DI K Q +LL ++ VKPGG+V
Sbjct: 332 QPDDLFDAALLDAPCSSTGTTRRHPDVLWTKGPEDIAKLTALQERLLRHALTLVKPGGLV 391
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD ++ E++V +VL + + E V + W ++ A+SP G R TPDML
Sbjct: 392 VFSNCSLDPEEGEDLVARVLSETDM-AERVAIKPEDWPGLE--AAISPLGAFRTTPDMLP 448
Query: 422 KIDGVSSGMDGFFAVALRR 440
G +SG+DGFFAV LRR
Sbjct: 449 LSGGFASGLDGFFAVVLRR 467
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241206925|ref|YP_002978021.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 460 | Back alignment and organism information |
|---|
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/440 (51%), Positives = 302/440 (68%), Gaps = 4/440 (0%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G+ AR ++ +L+ V+ +++ L LD E+G+ A+R L + D+ LVRAI+N TLR LP
Sbjct: 24 KPGLQARAAAAKILAAVVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLP 83
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RIDA + +L S LP +L +L + AQILYLDV D++ VDLAVEQA D NR FA
Sbjct: 84 RIDAAIAGLLDSPLPEGARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANLDPRNRRFA 143
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
KLVN+ILRR+ REK ++L +I ++ +P WF RLE YG++ LAIS++ + P IDLT
Sbjct: 144 KLVNAILRRLGREKEQVLDQIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLT 203
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK D E WA +LN V+LPTG +RL SI S+ GF EG WWVQDA+ASIP +LFG L
Sbjct: 204 VKSDPEDWAKRLNGVVLPTGSVRLAAFDGSIPSVEGFDEGAWWVQDAAASIPAKLFGDLL 263
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE I D +
Sbjct: 264 GKRTADLCAAPGGKTAQLILAGGAVTALDQSESRLRRLRSNLDRLGLKAE-TIAADLTTF 322
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P + FDA+L+DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL ++ +KPGG +
Sbjct: 323 EPAERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTL 382
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD + E+VV +VL S VE VP+ ++ W ++ A++P G R P ML+
Sbjct: 383 VFSNCSLDPVEGEDVVARVL-SDTDAVERVPIGASDWPGLE--AAITPLGEFRTLPTMLK 439
Query: 422 KIDGVSSGMDGFFAVALRRL 441
+G++SG+DGF+A LRR+
Sbjct: 440 MPEGIASGLDGFYAAVLRRV 459
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|150398383|ref|YP_001328850.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419] Length = 470 | Back alignment and organism information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/439 (50%), Positives = 303/439 (69%), Gaps = 5/439 (1%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G+ +R ++ +L+ V+ ++ L +LD E G+ +R L+ D+ LVRAI+N LR LP
Sbjct: 34 KPGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLP 93
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RI A +D +L + LP +L+ +L V+ AQILYLDV D++ VDLAVEQA+ D NR FA
Sbjct: 94 RIRAAIDSLLQTPLPEGARALEHVLTVAAAQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
LVN++LRR+SREK +L+R+ + +P WF +RL YG+++ ISDA + P ID+T
Sbjct: 154 SLVNAVLRRLSREKEAILERLQQVPAMPGWFFDRLVTCYGRDQAERISDAQLVPAAIDVT 213
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK D +WA +LN +LPTG +RL++ SI SLPGF+EG WWVQDA+ASIP +LFG ++
Sbjct: 214 VKSDAASWADRLNGTVLPTGSVRLQDFDGSIPSLPGFSEGGWWVQDAAASIPARLFGDIS 273
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
V+DLCAAPGGKTAQL+++GAKV ALD S RL +L+ NL+RL L + E D D+
Sbjct: 274 GRKVVDLCAAPGGKTAQLVLAGAKVIALDQSSSRLRRLKANLERLGLESA-TKEADMADF 332
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P++LFDA L+DAPCSSTGT RRHPDVLWT+ DD+ K A Q +LL ++ VKPGG++
Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPDDVEKLAGLQERLLRHALTLVKPGGLL 392
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD ++ EEVV +V+ E VP+++A W ++ A++ G R TP ML
Sbjct: 393 VFSNCSLDPREGEEVVARVVADG--GCERVPIDAAAWPGLE--QAITALGEFRTTPAMLS 448
Query: 422 KIDGVSSGMDGFFAVALRR 440
+SG+DGF+A LRR
Sbjct: 449 LGPPFASGLDGFYAAVLRR 467
|
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227823840|ref|YP_002827813.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] Length = 473 | Back alignment and organism information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/439 (50%), Positives = 299/439 (68%), Gaps = 5/439 (1%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G+ +R ++ +L+ V+ + SL +LD E+G+ A+R L+ D+ LVRAI+N LR LP
Sbjct: 34 KPGLKSRQAAAKILAAVIDRNTSLDGMLDQEHGNPAYRELNDADRALVRAILNSALRHLP 93
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RI A +D +L + LP +L+ +L V+ AQILYLD+ D++ VDLAVEQA+ D NR FA
Sbjct: 94 RIRAAIDSLLQTPLPEGARALEHVLTVAAAQILYLDIPDHSAVDLAVEQAQSDPRNRRFA 153
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
LVN++LRR+SREK +L+ + + IP WF ERL YG+ AIS+A + P IDLT
Sbjct: 154 SLVNAVLRRLSREKQAILEALQTVPAIPAWFYERLVAHYGRAEAEAISEAQLVPAAIDLT 213
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK + WA +L +LPTG +RL + +I SLPGF+EG WWVQDA+ASIP +LFG L+
Sbjct: 214 VKSEPALWAERLGGTVLPTGSVRLGDFTGTIPSLPGFSEGAWWVQDAAASIPARLFGDLS 273
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
+V+DLCAAPGGKTAQLI++GAKVTALD S RL +L+ NL+RL L A E D ++
Sbjct: 274 GKTVVDLCAAPGGKTAQLILAGAKVTALDQSSSRLRRLKANLERLGLEAR-TKETDMAEF 332
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P +LFDA L+DAPCSSTGT RRHPDVLWT+ D+ K A Q +LL ++ V+PGGIV
Sbjct: 333 RPDELFDAALLDAPCSSTGTTRRHPDVLWTKGPGDVEKLARLQERLLRHALTVVRPGGIV 392
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD ++ EEVV +V+ E +P+ ++ W ++ A++ G R TP ML
Sbjct: 393 VFSNCSLDPREGEEVVARVVADG--DCERLPIAASDWPGLE--AAITALGEFRTTPAMLP 448
Query: 422 KIDGVSSGMDGFFAVALRR 440
S+G+DGF+A LRR
Sbjct: 449 LDQPFSAGLDGFYAAVLRR 467
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|325294195|ref|YP_004280059.1| SUN protein [Agrobacterium sp. H13-3] Length = 461 | Back alignment and organism information |
|---|
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/439 (51%), Positives = 293/439 (66%), Gaps = 11/439 (2%)
Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61
K G+ AR+ ++ +L+ V+ K+ SL +LD E G+ +R LS D+ LVRAIVN LR LP
Sbjct: 33 KPGLAARVAATRILAAVLEKKTSLDGMLDSENGNPVYRALSLADRALVRAIVNSALRHLP 92
Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121
RI+A L +L LP+ SL +L V AQ+L+LDV D++ VDLAVEQA RD NR FA
Sbjct: 93 RIEAALSMLLDGPLPQGARSLHHVLVVGAAQVLHLDVPDHSAVDLAVEQAHRDPRNRRFA 152
Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181
KLVN++LRR+ REK E+ + IA + ++P+WF RL + YG E IS+A ++P IDLT
Sbjct: 153 KLVNAVLRRLGREKAEIEKAIADVPVLPDWFYARLVSAYGDEVAKRISEAQLTPSSIDLT 212
Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
VK D WA KL +LP G +RL E I SL GFAEG WWVQD +AS+PV+L G ++
Sbjct: 213 VKKDQAVWAEKLGGTVLPNGSVRLGEFEGQIPSLEGFAEGAWWVQDLAASMPVKLMGDIS 272
Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301
V DLCAAPGGKTAQL ++GAKVTALD S RL +LR NLDRL L+AE +E + Y
Sbjct: 273 GKRVADLCAAPGGKTAQLALAGAKVTALDQSGNRLRRLRENLDRLGLHAE-TVEANMLKY 331
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
P++LFDAVL+DAPCSSTGT+R+HPDV WT+D +DI K A Q ++L ++ V GGIV
Sbjct: 332 QPEQLFDAVLLDAPCSSTGTLRKHPDVCWTKDENDIAKLAALQGQMLRHALTLVGAGGIV 391
Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421
VFSNCSLD + E ++ +VL +P E V + W M A++ EG +R TPDM
Sbjct: 392 VFSNCSLDPSEGEAMIAQVLAENP-DFERVAVRKDDWPG--MEAAVTAEGDLRTTPDMF- 447
Query: 422 KIDGVSSGMDGFFAVALRR 440
G+DGFF+ LR+
Sbjct: 448 ------GGIDGFFSSVLRK 460
|
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 445 | Fmu (Sun) domain protein [Candidatus Liberibacter asiat | ||
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; Provi | 8e-65 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methyltran | 3e-54 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; Provi | 7e-36 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; Provi | 3e-59 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; Provi | 1e-43 | |
| KOG2360 | 413 | KOG2360, KOG2360, KOG2360, Proliferation-associated nuc | 1e-19 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; Provi | 9e-50 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Tra | 3e-68 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 2e-41 | |
| KOG1122 | 460 | KOG1122, KOG1122, KOG1122, tRNA and rRNA cytosine-C5-me | 5e-33 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA met | 2e-32 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase | 2e-21 | |
| KOG2198 | 375 | KOG2198, KOG2198, KOG2198, tRNA cytosine-5-methylases a | 3e-25 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltransfe | 1e-09 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-dependent | 4e-05 | |
| pfam01029 | 126 | pfam01029, NusB, NusB family | 1e-14 | |
| cd00620 | 126 | cd00620, Methyltransferase_Sun, N-terminal RNA binding | 1e-13 | |
| PRK09634 | 207 | PRK09634, nusB, transcription antitermination protein N | 3e-06 | |
| cd00447 | 129 | cd00447, NusB_Sun, RNA binding domain of NusB (N protei | 8e-06 | |
| TIGR01951 | 129 | TIGR01951, nusB, transcription antitermination factor N | 0.003 |
| >gnl|CDD|182822 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 8e-65
Identities = 137/402 (34%), Positives = 212/402 (52%), Gaps = 38/402 (9%)
Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63
MN R +++ + V+ + SL+ L + + +S +D+ L++ + LR LPR+
Sbjct: 1 SMNLRALAAAAILQVVDQGQSLSAALP-----ALQQKVSDKDRALLQELCYGVLRRLPRL 55
Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123
+ ++ +L L K+ + LL V + Q+LY + +A VD VE AK K L
Sbjct: 56 EWLIAQLLAKPLKGKQRIVHALLLVGLYQLLYTRIPAHAAVDETVEAAKALK-RPWAKGL 114
Query: 124 VNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGK--ERVLAISDACISPL- 176
VN++LRR RE+ ELL + + P W +RL+ Y + + +LA ++ P+
Sbjct: 115 VNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAYPEQWQAILAANNQ-RPPMW 173
Query: 177 ------------YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224
Y+ L + IE + H + IRL E P + LPGFAEG
Sbjct: 174 LRVNRRHHSRDAYLALLAEAGIEAFPHAVGP-----DAIRL-ETPVPVHQLPGFAEGWVS 227
Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282
VQDA+A + L N VLD CAAPGGKTA + + A+V ALD+ +RLE++R N
Sbjct: 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN 287
Query: 283 LDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339
L RL L A +I DA D + + FD +L+DAPCS+TG IRRHPD+ W R +DI
Sbjct: 288 LQRLGLKAT-VIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAA 346
Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
A Q ++L +KPGG ++++ CS+ +++E+ ++ L
Sbjct: 347 LAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL 388
|
Length = 427 |
| >gnl|CDD|161931 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-54
Identities = 124/393 (31%), Positives = 195/393 (49%), Gaps = 33/393 (8%)
Query: 21 KRISLTCLLDLEYGDSAFRLL-------SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73
+ I+ L LE G S LL S +D+ L++ + LR L ++D ++ ++
Sbjct: 1 RSIAAQALEQLEQGQSLSNLLPPLQQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMDR 60
Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133
+ K ++ L+ V + Q+LY + +A V VE AK K + LVN +LRR R
Sbjct: 61 PMKGKPRTVHYLILVGLYQLLYTRIPAHAAVAETVEGAKAIK-RKGLKGLVNGVLRRFQR 119
Query: 134 EKIELLQ---RIAGISIIPEWFKERL-ENFYGKERVLAISDACISPLYIDLTV---KFDI 186
E+ ELL + + PEW +RL + + G+ + +I +A + L + K
Sbjct: 120 EQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQ--SICEANNQRPPMWLRINRTKHSR 177
Query: 187 ETWAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239
+ W L L +RL E P ++ +LPGF EG VQDASA
Sbjct: 178 DEWLALLAEAGMKGFPHDLAPDAVRL-ETPAAVHALPGFEEGWVTVQDASAQWVATWLAP 236
Query: 240 LNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297
N ++LD CAAPGGKT + + A+V ALD+ + RL+++ NL RL L + D
Sbjct: 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIK-AETKD 295
Query: 298 A-----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352
+ + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L
Sbjct: 296 GDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIW 355
Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
+K GG +V++ CS+ +++ E ++ L+ P
Sbjct: 356 PLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Length = 426 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 7e-36
Identities = 113/404 (27%), Positives = 195/404 (48%), Gaps = 37/404 (9%)
Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60
MK+ N RL++ LL RK + + DS L +D+ + +V +R
Sbjct: 1 MKT--NVRLLAYRLL----RKYEKEKFIFREDV-DSVLSFLDDKDRRFFKELVWGVVR-- 51
Query: 61 PRIDAVLDFVLISSLPRKK---YSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116
+ +LD+ I+ L +KK +++ LR+ Q+L+++ V DYA V V+ +
Sbjct: 52 --KEELLDWY-INQLLKKKDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLV----K 104
Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
N +F KLVN++LRR+ + + + P+W +F +E VL I + PL
Sbjct: 105 NENFKKLVNAVLRRLR--TVPEPKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPL 162
Query: 177 YIDLTV--------KFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226
L V + AV + +++L ++ +G+ VQ
Sbjct: 163 PTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQ 222
Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283
S+ I L L VLD CAAPGGKT A+L+ K+ A+D+S+ +++ + +
Sbjct: 223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA 282
Query: 284 DRLHLYAEDIIEMDA--FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341
RL L + +I DA + FD +LVDAPC+S GT R HP+VL + +D K +
Sbjct: 283 KRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLS 342
Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385
Q +++ Q ++ GGI+++S C++ K+++ EVV++ +
Sbjct: 343 EIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK 386
|
Length = 431 |
| >gnl|CDD|184895 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 3e-59
Identities = 135/429 (31%), Positives = 212/429 (49%), Gaps = 51/429 (11%)
Query: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99
LS +D+ L+ +V T++ +D L + + LLR+S+ Q+LYLD V
Sbjct: 36 LSDKDKALLTELVYGTIQRKLTLDYYLAPFIKKRKKLDPWVRN-LLRMSLYQLLYLDKVP 94
Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISI---IPEWF 152
D+A V+ AVE AK+ + ++ AK VN +LR + RE + + I +SI P W
Sbjct: 95 DHAAVNEAVEIAKK-RGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWL 153
Query: 153 KERLENFYGKERVLAISDACISPLYIDL---TVKFDIETWAHKLNAVMLPTGGIRLKE-- 207
+R + YG+E+ I ++ P + T+K +E KL G ++E
Sbjct: 154 VKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEE-----EGYEVEESL 208
Query: 208 -LPE-------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT--- 256
PE +I F +G+ +QD S+ + +VLD CAAPGGKT
Sbjct: 209 LSPEALVIEKGNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHI 268
Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKL---FDAVL 311
A+L+ + KV ALD+ + +L+ + N RL L IE A D +K FD +L
Sbjct: 269 AELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFAEKFDKIL 325
Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371
VDAPCS G IRR PD+ + + +DI Q ++L ++K GGI+V+S C+++K+
Sbjct: 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE 385
Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431
++EEV++ L P ELVPL + + +G+++I P+ G D
Sbjct: 386 ENEEVIEAFLEEHP-EFELVPLQHEKPDELVYEVK---DGYLQILPND--------YGTD 433
Query: 432 GFFAVALRR 440
GFF LR+
Sbjct: 434 GFFIAKLRK 442
|
Length = 444 |
| >gnl|CDD|184897 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-43
Identities = 132/453 (29%), Positives = 217/453 (47%), Gaps = 52/453 (11%)
Query: 23 ISLTCLLDLEYG----DSAF-RLLS-----QRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72
++L L +LE G D+ R+L + D+ L +VN LR+ ++D + I
Sbjct: 7 LALQVLQELETGERKSDTLLHRMLERSSLERNDRALATELVNGVLRYRLQLDFI-----I 61
Query: 73 SSLPRKKYS-----LQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126
S L+ +LR+ V Q+L+LD V +A V+ V+ A++ K H AKLVN
Sbjct: 62 SRFYHHDLEKAAPVLKNILRLGVYQLLFLDRVPRWAAVNECVKLARKYK-GEHMAKLVNG 120
Query: 127 ILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAI-SDACISPL 176
+LR +S E I +R++ + PEW ER YG+ER A+ S +PL
Sbjct: 121 VLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPL 180
Query: 177 Y---IDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSL-PGFAEGVWWVQDASA 230
+ I+ +K E + +V G+ L + P G+ VQ+ +
Sbjct: 181 FGFRIN-RLKTTPEKFLAAPADASVTFEKSGLPNFFLSKDFSLFEPFLKLGLVSVQNPTQ 239
Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287
++ L +VLDLCAAPGGK+ A+L+ + ++TA+D ++LEK+R + L
Sbjct: 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG 299
Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347
+ + IE DA + P++ DA+L+DAPC+ TG + R ++ W + + + Q +L
Sbjct: 300 ITIIETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAEL 359
Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407
L S +KPGG++V++ CS++ +++E ++ L+ P E S
Sbjct: 360 LDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP---EFSAEPSPGSLPEPFHEVA 416
Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
P+G I P G G DG FA LR+
Sbjct: 417 HPKGAILTLP-------GEHEGFDGGFAQRLRK 442
|
Length = 445 |
| >gnl|CDD|37571 KOG2360, KOG2360, KOG2360, Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 1e-19
Identities = 95/453 (20%), Positives = 173/453 (38%), Gaps = 69/453 (15%)
Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71
+ +L V +K S+ L Y S+++ A+V TL++ P +D +L+
Sbjct: 5 AEILRDVEKKEGSIK---MLVYE------SSKQNPKRTLALVCETLKYRPVLDEILED-- 53
Query: 72 ISSLPRKKYSLQQLLRVSVAQILY---------------LDVADYAVVDLAVEQAKRDKE 116
K + + V V +L + ++ L +E K+
Sbjct: 54 SELKDAKMLARLVHMVVLVHDLLLSKIKRSGLMIDKRELKVIRLRLILRLKIETVMLKKK 113
Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176
+ V S LR + L R I+ + + + ++ E+ I++
Sbjct: 114 -----RKVKS-LRELKLTMKIPLPRYVRINTL-KGTTDEALDYLDYEKWKMITELKPDEF 166
Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236
Y+D V+ + + IV + G + +QD ++ +P L
Sbjct: 167 YVDPHVE------------------NLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHL 208
Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293
V+D CAAPG KT+ L + + K+ A + +R LR L + +
Sbjct: 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVES 268
Query: 294 IEMDAFDYCPKKLFDAV---LVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLL 348
+E D + + F V LVD CS +G + R + T + + FQ ++L
Sbjct: 269 VEGDFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRIL 328
Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMAL 407
++F + V+S CSL ++++E+VVQ+VL+ +P L P W ++
Sbjct: 329 KHALTFPNLKRL-VYSTCSLHREENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFS 387
Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440
E +R +P S+ GFF R
Sbjct: 388 GAEHCLRASPK--------STLTIGFFVALFER 412
|
Length = 413 |
| >gnl|CDD|184894 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 9e-50
Identities = 118/387 (30%), Positives = 176/387 (45%), Gaps = 56/387 (14%)
Query: 82 LQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR--EKIEL 138
L+ LL + + Q+ Y+D + A V+ VE AK++ A +VN ILR+ R E +
Sbjct: 74 LRWLLHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGG-LAGVVNGILRQYLRAREAGDP 132
Query: 139 L-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIET 188
L +R+A + P+W + + G E + P +DL + + +E
Sbjct: 133 LPLPEDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEE 192
Query: 189 WAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241
L + G+RL P SI LPG+ EG W VQD SA + L
Sbjct: 193 VQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQP 252
Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298
+LD CAAPGGKT A+L+ ++ A+D S RL+KL+ N RL L + I+ D+
Sbjct: 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS 312
Query: 299 FDYCPKK-----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353
+ K FD +L+DAPCS GT+ RHPD W + + I + A Q +LL
Sbjct: 313 RNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372
Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413
+KPGG +V++ C+L ++E +++ L P WK L P
Sbjct: 373 LLKPGGTLVYATCTLHPAENEAQIEQFLARHP-----------DWK-------LEPPKQ- 413
Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440
+I P DGFF LR+
Sbjct: 414 KIWPH--------RQDGDGFFMAVLRK 432
|
Length = 434 |
| >gnl|CDD|30493 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 3e-68
Identities = 128/364 (35%), Positives = 183/364 (50%), Gaps = 32/364 (8%)
Query: 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI---IPEWFKE 154
V +A VD VE AK AK VN++LRR+ R + LL+ I + PEW E
Sbjct: 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEILRPAFRYSHPEWLVE 60
Query: 155 RLENFYGKERVLAISDACISPLYIDL---TVKFDIETWAHKLNAV-------MLPTGGIR 204
+L + G++ AI+ A + P L T+K D+E L + +R
Sbjct: 61 KLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLR 120
Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---- 260
++ I LP FAEG+ +VQD ++ +P + VLDLCAAPGGKT L
Sbjct: 121 IEA-SGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELME 179
Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF----DYCPKKLFDAVLVDAPC 316
GA V A+DVS +RL++LR NL RL + ++ DA + FD +L+DAPC
Sbjct: 180 NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPC 239
Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376
S TG IRR PDV W R +DI + A Q+++L + +KPGG++V+S CSL +++EEV
Sbjct: 240 SGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEV 299
Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436
V++ L P EL P+ W + + R+ P G DGFF
Sbjct: 300 VERFLERHPD-FELEPVRLP-WGPLFEGLGSELGKTRRLYPH--------VHGTDGFFIA 349
Query: 437 ALRR 440
LR+
Sbjct: 350 KLRK 353
|
Length = 355 |
| >gnl|CDD|144689 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 2e-41
Identities = 89/244 (36%), Positives = 129/244 (52%), Gaps = 17/244 (6%)
Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQ 258
+ + +LP SI SLP F G VQDAS+ + + +LD+CAAPGGKT A+
Sbjct: 45 ALPVGDLPYSIGSLPPFENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAE 104
Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAP 315
L+ + V A+D +K+RL+++ N+ RL ++ + E DA FD +L+DAP
Sbjct: 105 LMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRILLDAP 164
Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
CS TG IRR PD+ W R DI + A Q++LL VKPGG++V+S CS+ +++E
Sbjct: 165 CSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEA 224
Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
V++ L+ P VELVP + K RI L+ + DGFF
Sbjct: 225 VIKYFLQKRPD-VELVPTGLSEGKIA---------LAKRIVKGGLQSLPH-ELNRDGFFF 273
Query: 436 VALR 439
LR
Sbjct: 274 AKLR 277
|
Length = 277 |
| >gnl|CDD|36338 KOG1122, KOG1122, KOG1122, tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-33
Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 12/246 (4%)
Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQ 258
G+ + + I + P + G + +Q+AS+ +PV +LD+CAAPGGKT A
Sbjct: 202 GLVVFDSVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAA 261
Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAP 315
L+ + + A D ++ RL+ L+ NL RL + + D ++ K+ FD VL+DAP
Sbjct: 262 LMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAP 321
Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375
CS TG I + V + DI++ A QR+LLL I VK GG++V+S CS+ +++E
Sbjct: 322 CSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381
Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435
VV L+ P V+LVP G + + + MDGFF
Sbjct: 382 VVDYALKKRP-EVKLVPTGLDIGGE-----GRFRGGRFHPSLKLTRRFYPHVHNMDGFFV 435
Query: 436 VALRRL 441
L++
Sbjct: 436 AKLKKA 441
|
Length = 460 |
| >gnl|CDD|129538 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 2e-32
Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---A 257
G + E P I S P + G++++Q+AS+ IP VLD+ AAPGGKT +
Sbjct: 31 GFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQIS 90
Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLVDA 314
L+ + + A + SK R + L N++R + + D PK FDA+L+DA
Sbjct: 91 ALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPK--FDAILLDA 148
Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374
PCS G IR+ P +DI + + Q++L+ +KPGG++V+S CSL+ +++E
Sbjct: 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENE 208
Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434
VV +L P VE +P ++ + +G +R+ P +GFF
Sbjct: 209 AVVDYLLEKRPDVVEELPKGDEFFGANKGKE--EVKGALRVFPQ--------IYDCEGFF 258
Query: 435 AVALRR 440
LR+
Sbjct: 259 VAKLRK 264
|
Length = 264 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-21
Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 22/230 (9%)
Query: 221 GVWWVQDASASIPVQ-LFGTLN-NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274
G++++Q+AS+ +PV LF N VLD+ AAPG KT Q+ GA V A + S
Sbjct: 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIV-ANEYSAS 149
Query: 275 RLEKLRCNLDRLHLYAEDIIEMDA--F-DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331
R++ L N+ R + + D F P+ FDA+L+DAPCS GT+R+ PD L
Sbjct: 150 RVKVLHANISRCGVSNVALTHFDGRVFGAALPET-FDAILLDAPCSGEGTVRKDPDALKN 208
Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391
+ ++ A QR+L+ +KPGG +V+S C+L++++++ V + + P VE
Sbjct: 209 WSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFE 268
Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441
PL + AL+ EG++ + P + + +GFF LR+
Sbjct: 269 PLGDLF---PGAEKALTEEGFLHVFPQIYDS--------EGFFVARLRKT 307
|
Length = 470 |
| >gnl|CDD|37409 KOG2198, KOG2198, KOG2198, tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 112 bits (280), Expect = 3e-25
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------VSGAKVTALDVSKR 274
G + Q+A + +PV G VLD+CAAPGGKTAQL+ + V A DV +
Sbjct: 135 GNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPK 194
Query: 275 RLEKLRCNLDRLHLYAEDIIEMDA--FDYCPKK--------LFDAVLVDAPCSSTGTIRR 324
RL L L RL + DA F K FD VLVD PCS GT+R+
Sbjct: 195 RLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRK 254
Query: 325 HPDVL---WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381
+P++ W + + Q ++L +G+ +K GG +V+S CSL+ ++E VVQ+ L
Sbjct: 255 NPNIWKEGWKTQRALGLHA--LQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312
Query: 382 RSSPIPVELV 391
+ VELV
Sbjct: 313 QKVGGAVELV 322
|
Length = 375 |
| >gnl|CDD|31289 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 244 SVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCN--LDRLHLYAEDIIEMDAFD 300
VL+L + GG + + GA VT++D+SKR LE R N L+ L I D F
Sbjct: 220 RVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279
Query: 301 YCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355
+ K + FD +++D P + R ++ D + L + +
Sbjct: 280 WLRKAERRGEKFDLIILDPP-----SFARSKKQEFSAQRD--------YKDLNDLALRLL 326
Query: 356 KPGGIVVFSNCS 367
PGG +V S+CS
Sbjct: 327 APGGTLVTSSCS 338
|
Length = 393 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 245 VLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--Y 301
VLDL G L GA+VT +D+S LE R L ++++ DA +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361
+ FD ++ D P D ++ A R+LL KPGG++
Sbjct: 62 EADESFDVIISDPPLHH-----------LVEDLARFLEEA---RRLL-------KPGGVL 100
Query: 362 VFS 364
V +
Sbjct: 101 VLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).. Length = 107 |
| >gnl|CDD|144570 pfam01029, NusB, NusB family | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
NAR ++ L V + SL LLD L +RD+ +V LR L +D
Sbjct: 1 RNARELALQALYAVEERGASLNELLDKL----LEADLDERDRAFATELVYGVLRNLEELD 56
Query: 65 AVLD-FVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122
A++ + L R + +LR++ ++LYL D+ + ++ AVE AK+ A
Sbjct: 57 ALIAKLLENWPLERLDPVDRAILRLAAYELLYLDDIPPHVAINEAVELAKK-FGGEKSAG 115
Query: 123 LVNSILRRVSR 133
VN +LR+++R
Sbjct: 116 FVNGVLRKIAR 126
|
The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. Length = 126 |
| >gnl|CDD|29566 cd00620, Methyltransferase_Sun, N-terminal RNA binding domain of the methyltransferase Sun | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64
MNAR ++ +L V+++ SL +L S RD+ L +V TLR+L +D
Sbjct: 1 MNARSTAAEVLRDVLQRGASLNAVLSALQKKD----KSDRDRGLATELVYGTLRWLALLD 56
Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124
+++ +L K ++ LLR+ + Q+LYLDV +A VD VE AK K+ A LV
Sbjct: 57 WIINPLLKKPDVGKDPDVRNLLRLGLYQLLYLDVPPHAAVDETVEIAKIRKD-LGRAGLV 115
Query: 125 NSILRRVSREK 135
N++LRR RE
Sbjct: 116 NAVLRRFERED 126
|
The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.. Length = 126 |
| >gnl|CDD|182007 PRK09634, nusB, transcription antitermination protein NusB; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 16/107 (14%)
Query: 39 RLLSQRDQILVRA----IVNVTLRFLPRIDAVLDFVL----ISSLPRKKYSLQQLLRVSV 90
LL DQ VR + +R ID +LD V+ + LPR + +LR++V
Sbjct: 102 ELLQLADQEEVREYALERIGAVIRNRKEIDQLLDTVMVGWQLKRLPRID---RDILRLAV 158
Query: 91 AQILYLDVADYAVVDLAVEQAKR--DKENRHFAKLVNSILRRVSREK 135
+IL+L+ ++ AVE AKR D++ R F +N +LRR+
Sbjct: 159 VEILFLNTPAAVAINEAVELAKRYSDEQGRRF---INGVLRRLQDAL 202
|
Length = 207 |
| >gnl|CDD|29564 cd00447, NusB_Sun, RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-06
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVL----ISSLPRKKYSLQQLLRVSVAQILYL 96
L+++D+ +V LR LP +D ++ +L + L + ++ +LL + Q+LY
Sbjct: 33 LAKKDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRAILRLLLYELYQLLY- 91
Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
DV ++ AVE AKR + AK VN +LRR+++E
Sbjct: 92 DVPPPVAINEAVELAKRFGD-DDSAKFVNGVLRRIAKES 129
|
This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the N-terminal non-catalytic RNA-binding domain with NusB.. Length = 129 |
| >gnl|CDD|162621 TIGR01951, nusB, transcription antitermination factor NusB | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL-------LRVS 89
R L + D+ +V L ID ++ L K +SL++L LR++
Sbjct: 31 EERELDEEDREYFLELVRGVLENQEEIDELISPHL------KDWSLERLDPVDRAILRLA 84
Query: 90 VAQILYLDVADYAVV-DLAVEQAKR---DKENRHFAKLVNSILRRVSRE 134
++LY Y VV + AVE AK+ + K VN +L ++++E
Sbjct: 85 AYELLYRPDVPYKVVINEAVELAKKFGDEDS----HKFVNGVLDKIAKE 129
|
A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. Length = 129 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 445 | Fmu (Sun) domain protein [Candidatus Liberibacter asiat | ||
| PRK10901 | 428 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 487 | rsmB ribosomal RNA small subunit methyltransferase B; I | 100.0 | |
| KOG2360 | 413 | consensus | 100.0 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translation, | 100.0 | |
| PRK11933 | 471 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Revi | 100.0 | |
| pfam01189 | 277 | Nol1_Nop2_Fmu NOL1/NOP2/sun family. | 100.0 | |
| TIGR00446 | 284 | nop2p NOL1/NOP2/sun family putative RNA methylase; Inte | 100.0 | |
| KOG1122 | 460 | consensus | 100.0 | |
| KOG2198 | 375 | consensus | 100.0 | |
| pfam05175 | 170 | MTS Methyltransferase small domain. This domain is foun | 99.22 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [General fun | 99.13 | |
| pfam10672 | 286 | Methyltrans_SAM S-adenosylmethionine-dependent methyltr | 99.08 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | 98.97 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.93 | |
| PRK08287 | 186 | cobalt-precorrin-6Y C(15)-methyltransferase; Validated | 98.87 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provi | 98.87 | |
| pfam01209 | 233 | Ubie_methyltran ubiE/COQ5 methyltransferase family. | 98.82 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.78 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltransfer | 98.78 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provisional | 98.69 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone biosy | 98.69 | |
| PRK09328 | 277 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 98.64 | |
| pfam08704 | 309 | GCD14 tRNA methyltransferase complex GCD14 subunit. GCD | 98.64 | |
| TIGR03534 | 251 | RF_mod_HemK protein-(glutamine-N5) methyltransferase, r | 98.61 | |
| PRK01544 | 503 | bifunctional N5-glutamine S-adenosyl-L-methionine-depen | 98.59 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ribosom | 98.58 | |
| pfam01170 | 171 | UPF0020 Putative RNA methylase family UPF0020. This dom | 98.57 | |
| COG2520 | 341 | Predicted methyltransferase [General function predictio | 98.56 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provi | 98.55 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function predict | 98.49 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.43 | |
| pfam02384 | 312 | N6_Mtase N-6 DNA Methylase. Restriction-modification (R | 98.3 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal structu | 98.28 | |
| KOG1540 | 296 | consensus | 98.23 | |
| PRK11036 | 256 | putative metallothionein SmtA; Provisional | 98.19 | |
| TIGR00438 | 192 | rrmJ ribosomal RNA large subunit methyltransferase J; I | 98.04 | |
| KOG2904 | 328 | consensus | 98.03 | |
| pfam01728 | 176 | FtsJ FtsJ-like methyltransferase. This family consists | 98.0 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related methyl | 98.0 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal structu | 97.99 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, ribo | 97.98 | |
| TIGR01934 | 242 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis meth | 97.9 | |
| PRK00517 | 298 | prmA ribosomal protein L11 methyltransferase; Reviewed | 97.88 | |
| pfam01269 | 229 | Fibrillarin Fibrillarin. | 97.75 | |
| KOG2187 | 534 | consensus | 97.75 | |
| pfam06325 | 294 | PrmA Ribosomal protein L11 methyltransferase (PrmA). Th | 97.66 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methylt | 97.62 | |
| ) (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00080">TIGR00080 | 228 | pimt protein-L-isoaspartate O-methyltransferase; InterP | 97.58 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General function | 97.56 | |
| TIGR02072 | 272 | BioC biotin biosynthesis protein BioC; InterPro: IPR011 | 97.53 | |
| PRK00107 | 216 | gidB glucose-inhibited division protein B; Reviewed | 97.47 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Provisio | 97.47 | |
| KOG2915 | 314 | consensus | 97.44 | |
| TIGR02143 | 361 | trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: | 97.41 | |
| KOG2671 | 421 | consensus | 97.28 | |
| PRK06922 | 679 | hypothetical protein; Provisional | 97.28 | |
| pfam02390 | 199 | Methyltransf_4 Putative methyltransferase. This is a fa | 97.26 | |
| PRK00121 | 229 | trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | 97.25 | |
| PTZ00146 | 296 | fibrillarin; Provisional | 97.18 | |
| pfam02527 | 184 | GidB rRNA small subunit methyltransferase G. This is a | 97.0 | |
| TIGR00537 | 183 | hemK_rel_arch methylase, putative; InterPro: IPR004557 | 96.99 | |
| KOG1099 | 294 | consensus | 96.86 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General function | 96.74 | |
| TIGR00406 | 330 | prmA ribosomal protein L11 methyltransferase; InterPro: | 96.54 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyltrans | 96.42 | |
| TIGR01177 | 358 | TIGR01177 conserved hypothetical protein TIGR01177; Int | 96.31 | |
| PRK03612 | 516 | spermidine synthase; Provisional | 96.19 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.18 | |
| pfam08003 | 315 | Methyltransf_9 Protein of unknown function (DUF1698). T | 95.98 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, ribo | 95.97 | |
| KOG1596 | 317 | consensus | 95.92 | |
| pfam12147 | 311 | Hydrolase_5 Putative lysophospholipase. This domain is | 95.91 | |
| TIGR00536 | 311 | hemK_fam methyltransferase, HemK family; InterPro: IPR0 | 95.83 | |
| TIGR00138 | 197 | gidB methyltransferase GidB; InterPro: IPR003682 GidB ( | 95.8 | |
| pfam01564 | 240 | Spermine_synth Spermine/spermidine synthase. Spermine a | 95.65 | |
| TIGR00006 | 323 | TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: | 95.6 | |
| TIGR00477 | 239 | tehB tellurite resistance protein TehB; InterPro: IPR00 | 95.43 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltransfer | 95.15 | |
| KOG4589 | 232 | consensus | 94.93 | |
| PRK01581 | 363 | speE spermidine synthase; Validated | 94.88 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent methyltra | 94.87 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and meta | 94.63 | |
| pfam10294 | 171 | Methyltransf_16 Putative methyltransferase. | 94.56 | |
| pfam04989 | 202 | CmcI Cephalosporin hydroxylase. Members of this family | 94.38 | |
| KOG2899 | 288 | consensus | 93.97 | |
| KOG1541 | 270 | consensus | 93.79 | |
| KOG1975 | 389 | consensus | 93.75 | |
| pfam05724 | 203 | TPMT Thiopurine S-methyltransferase (TPMT). This family | 93.27 | |
| KOG2078 | 495 | consensus | 93.01 | |
| TIGR00091 | 216 | TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; Inter | 92.88 | |
| KOG0820 | 315 | consensus | 90.36 | |
| cd00620 | 126 | Methyltransferase_Sun N-terminal RNA binding domain of | 99.94 | |
| pfam01029 | 126 | NusB NusB family. The NusB protein is involved in the r | 99.86 | |
| cd00447 | 129 | NusB_Sun RNA binding domain of NusB (N protein-Utilizat | 99.85 | |
| PRK00202 | 132 | nusB transcription antitermination protein NusB; Review | 99.84 | |
| cd00619 | 130 | Terminator_NusB Transcription termination factor NusB ( | 99.79 | |
| TIGR01951 | 140 | nusB transcription antitermination factor NusB; InterPr | 99.77 | |
| COG0781 | 151 | NusB Transcription termination factor [Transcription] | 99.68 | |
| PRK09634 | 206 | nusB transcription antitermination protein NusB; Provis | 99.46 | |
| pfam02475 | 199 | Met_10 Met-10+ like-protein. The methionine-10 mutant a | 98.96 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 98.89 | |
| PRK11873 | 258 | arsM arsenite S-adenosylmethyltransferase; Reviewed | 98.86 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransferase, | 98.85 | |
| PRK05134 | 233 | 3-demethylubiquinone-9 3-methyltransferase; Provisional | 98.81 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methyltran | 98.8 | |
| PRK03522 | 375 | rumB 23S rRNA methyluridine methyltransferase; Reviewed | 98.7 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase and rel | 98.67 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replication, | 98.67 | |
| pfam09445 | 165 | Methyltransf_15 RNA cap guanine-N2 methyltransferase. R | 98.62 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (PKS) e | 98.6 | |
| PRK11207 | 198 | tellurite resistance protein TehB; Provisional | 98.58 | |
| PRK10909 | 198 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | 98.48 | |
| PRK01683 | 252 | trans-aconitate 2-methyltransferase; Provisional | 98.46 | |
| TIGR02469 | 135 | CbiT precorrin-6Y C5,15-methyltransferase (decarboxylat | 98.46 | |
| PRK13942 | 214 | protein-L-isoaspartate O-methyltransferase; Provisional | 98.41 | |
| PRK00312 | 213 | pcm protein-L-isoaspartate O-methyltransferase; Reviewe | 98.36 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factors [Tr | 98.36 | |
| PRK09329 | 285 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 98.33 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.29 | |
| PRK11783 | 716 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | 98.28 | |
| pfam02353 | 273 | CMAS Cyclopropane-fatty-acyl-phospholipid synthase. Thi | 98.22 | |
| pfam01135 | 205 | PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransf | 98.21 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzo | 98.16 | |
| TIGR01983 | 275 | UbiG ubiquinone biosynthesis O-methyltransferase; Inter | 98.16 | |
| pfam03848 | 192 | TehB Tellurite resistance protein TehB. | 98.16 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransferase [P | 98.04 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, recombi | 98.03 | |
| pfam05401 | 201 | NodS Nodulation protein S (NodS). This family consists | 97.97 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provisional | 97.9 | |
| pfam01596 | 204 | Methyltransf_3 O-methyltransferase. Members of this fam | 97.88 | |
| TIGR00095 | 210 | TIGR00095 putative methyltransferase; InterPro: IPR0043 | 97.86 | |
| pfam03602 | 181 | Cons_hypoth95 Conserved hypothetical protein 95. | 97.85 | |
| pfam08241 | 95 | Methyltransf_11 Methyltransferase domain. Members of th | 97.8 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function predict | 97.75 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.75 | |
| PRK04338 | 376 | N(2),N(2)-dimethylguanosine tRNA methyltransferase; Pro | 97.74 | |
| pfam08242 | 98 | Methyltransf_12 Methyltransferase domain. Members of th | 97.74 | |
| TIGR02021 | 224 | BchM-ChlM magnesium protoporphyrin O-methyltransferase; | 97.51 | |
| KOG1270 | 282 | consensus | 97.51 | |
| KOG1271 | 227 | consensus | 97.36 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.29 | |
| PRK12335 | 289 | tellurite resistance protein TehB; Provisional | 97.22 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltransfer | 97.17 | |
| pfam03291 | 327 | Pox_MCEL mRNA capping enzyme. This family of enzymes ar | 96.8 | |
| COG4076 | 252 | Predicted RNA methylase [General function prediction on | 96.75 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylation) [ | 96.49 | |
| pfam01861 | 243 | DUF43 Protein of unknown function DUF43. This family in | 96.37 | |
| pfam05219 | 265 | DREV DREV methyltransferase. This family contains DREV | 96.34 | |
| KOG1663 | 237 | consensus | 96.3 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.28 | |
| pfam00398 | 258 | RrnaAD Ribosomal RNA adenine dimethylase. | 95.93 | |
| KOG2361 | 264 | consensus | 95.86 | |
| KOG4300 | 252 | consensus | 95.62 | |
| TIGR02085 | 386 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase R | 94.96 | |
| COG1568 | 354 | Predicted methyltransferases [General function predicti | 93.61 | |
| KOG1661 | 237 | consensus | 93.12 | |
| pfam05891 | 217 | Hydroxy-O-Methy Putative hydroxyindole-O-methyltransfer | 92.3 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism] | 90.88 | |
| pfam05185 | 447 | PRMT5 PRMT5 arginine-N-methyltransferase. The human hom | 90.36 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 90.2 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to tRNA ( | 98.67 | |
| PRK05031 | 363 | tRNA (uracil-5-)-methyltransferase; Validated | 98.56 | |
| PRK13168 | 440 | rumA 23S rRNA 5-methyluridine methyltransferase; Review | 98.55 | |
| pfam05958 | 353 | tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. Thi | 98.44 | |
| PRK13943 | 317 | protein-L-isoaspartate O-methyltransferase; Provisional | 98.42 | |
| TIGR00479 | 434 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA; Inter | 98.03 | |
| KOG2730 | 263 | consensus | 97.51 | |
| pfam02005 | 375 | TRM N2,N2-dimethylguanosine tRNA methyltransferase. Thi | 97.15 | |
| pfam04445 | 235 | DUF548 Protein of unknown function (DUF548). Protein of | 96.82 | |
| PRK00050 | 309 | mraW S-adenosyl-methyltransferase MraW; Provisional | 96.65 | |
| PRK11760 | 356 | putative RNA 2'-O-ribose methyltransferase; Provisional | 96.58 | |
| pfam01795 | 310 | Methyltransf_5 MraW methylase family. Members of this f | 96.44 | |
| PRK05785 | 225 | hypothetical protein; Provisional | 96.27 | |
| KOG1253 | 525 | consensus | 96.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 96.24 | |
| COG3897 | 218 | Predicted methyltransferase [General function predictio | 96.17 | |
| PHA02056 | 279 | putative methyltransferase | 95.96 | |
| KOG3420 | 185 | consensus | 95.91 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.61 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 95.43 | |
| PRK06202 | 233 | hypothetical protein; Provisional | 95.23 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylase | 95.11 | |
| PTZ00338 | 296 | dimethyladenosine transferase; Provisional | 95.08 | |
| pfam07021 | 193 | MetW Methionine biosynthesis protein MetW. This family | 95.06 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Tr | 94.74 | |
| pfam00145 | 319 | DNA_methylase C-5 cytosine-specific DNA methylase. | 94.6 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General func | 94.48 | |
| PRK00274 | 267 | ksgA dimethyladenosine transferase; Reviewed | 94.03 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, recom | 92.19 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA replic | 97.23 | |
| KOG1098 | 780 | consensus | 96.31 | |
| pfam01234 | 261 | NNMT_PNMT_TEMT NNMT/PNMT/TEMT family. | 90.62 | |
| pfam04816 | 204 | DUF633 Family of unknown function (DUF633). This family | 95.56 | |
| pfam10354 | 166 | DUF2431 Domain of unknown function (DUF2431). This is t | 94.66 | |
| pfam10237 | 161 | N6-adenineMlase Probable N6-adenine methyltransferase. | 91.87 | |
| KOG3115 | 249 | consensus | 91.44 |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=837.26 Aligned_cols=410 Identities=30% Similarity=0.482 Sum_probs=366.4 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 77846999999999999955998899999985112321689889999999999999608999999999842881004889 Q gi|254780666|r 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 (445) Q Consensus 2 ~~~~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~ 81 (445) T Consensus 1 ~~~~n~R~~A~~~L~~v~~~g~~~~~~L~~~~-----~~l~~~Dr~l~~elvyG~lR~~~~LD~il~~~~~~p~~~~~~~ 75 (428) T PRK10901 1 KKQYNLRSIAAQAVEQVVEQGQSLSNVLPPLQ-----QKVSDKDKALLQELCFGVLRTLSQLEWLINKLMARPMTGKQRT 75 (428) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 99764999999999999986992999999987-----0599988999999999999768999999999837998543479 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCC---HHHHHHHCCCHHHHHHHHH Q ss_conf 9999999999999868997332562258775225875544444310221100111100---0001231299789999884 Q gi|254780666|r 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL---QRIAGISIIPEWFKERLEN 158 (445) Q Consensus 82 ~~~iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~---~~l~~~~s~P~Wl~~~~~~ 158 (445) T Consensus 76 v~~lLrlg~yQll~~~iP~~AaVne~Ve~ak~~~~-~~~~glVNAVLR~~~r~~~~~~~~~~~~~~~~s~P~Wlv~~~~~ 154 (428) T PRK10901 76 VHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKR-PQLKGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQK 154 (428) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCHHHHHHHHH T ss_conf 99999999999961799951479899999986166-30467889999998604321103324621243098789999999 Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHHHHHHHHCC-------CCCCEECCCCCCHHHCHHHHHCCCEECCC Q ss_conf 1267999999996146983667615---9989999864321023-------56611104567855585011001013463 Q gi|254780666|r 159 FYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228 (445) Q Consensus 159 ~~G~~~~~~l~~~~~~p~~l~i~~k---~~~~~~~~~L~~~~~~-------~~~~~~~~~~~~i~~~~~f~eG~~~VQD~ 228 (445) T Consensus 155 ~~~~-~~~~ll~a~n~~pp~~lRvN~~k~~~~~~~~~L~~~gi~~~~~~~~~~~l~l~~-~~~i~~l~~f~~G~~~VQD~ 232 (428) T PRK10901 155 AYPE-QWQSIVEANNQRPPMWLRVNRTHHSRDEWLALLEEAGMKGFPHPDYPDAVRLET-PAPVHALPGFEEGWVTVQDA 232 (428) T ss_pred HHHH-HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECC-CCCHHHCCCCCCCEEEEECH T ss_conf 7589-999999960899983788357769999999999858997352688997699879-99811081001681898172 Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CC Q ss_conf 2123222356321331003556447000010--256841000105967987765443204887417720774457---74 Q gi|254780666|r 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY---CP 303 (445) Q Consensus 229 aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~---~~ 303 (445) T Consensus 233 aSql~~~ll~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~-~~v~~~d~~~~~~~~~ 311 (428) T PRK10901 233 SAQGCVTLLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCG 311 (428) T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHCC T ss_conf 767899864988898798716887668999999645892899969888999999999975997-3999776557233134 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 312 ~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~ 391 (428) T PRK10901 312 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQR 391 (428) T ss_pred CCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 45678799758988872444685421128999999999999999999998668898899998999957789999999985 Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEC Q ss_conf 8874178137632335566434558688089887632355777888631466765412 Q gi|254780666|r 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 (445) Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~ 441 (445) T Consensus 392 ~~-d~~l~~~~~~------------~~~~~~~~P~--------~~~~DGFf~a~L~kk 428 (428) T PRK10901 392 TP-DAELCETGTP------------EQPGKQNLPG--------AEEGDGFFYAKLIKK 428 (428) T ss_pred CC-CCEECCCCCC------------CCCCEEECCC--------CCCCCCEEEEEEEEC T ss_conf 99-9786067788------------9998788999--------999873799999849 |
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=791.97 Aligned_cols=422 Identities=33% Similarity=0.457 Sum_probs=349.0 Q ss_pred HHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 999999999999559988-9999998511232168988999999999999960899999999984288100488999999 Q gi|254780666|r 8 RLVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL 86 (445) Q Consensus 8 R~~A~~iL~~v~~~~~~~-~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~iL 86 (445) T Consensus 1 R~~A~~~l~~V~~~~~sys~~~~~~~~~~---~~ls~~dr~Ll~ELvyGv~r~~~~Ld~li~~L~~kP~~~k~~~~~r~l 77 (487) T TIGR00563 1 RDIAAEALIQVLEQGQSYSNLLPDLVLKQ---NELSDQDRRLLTELVYGVLRRLRALDYLIKKLIDKPLKGKPRVVHRLL 77 (487) T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 95789999999731551456789988630---578830032311122232135045789999974178888748999999 Q ss_pred HHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC-------CHHHHHHHCCCHHHHH-HHH Q ss_conf 9999999986-899733256225877522587554444431022110011110-------0000123129978999-988 Q gi|254780666|r 87 RVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKE-RLE 157 (445) Q Consensus 87 r~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~-------~~~l~~~~s~P~Wl~~-~~~ 157 (445) T Consensus 78 ~L~ly~~~yl~~vP~~AAv~e~V~~Ak~~-g~~~l~~lVNGvLR~~qR~~~~~~~~l~~~~~~~~~~y~hP~WL~~~l~~ 156 (487) T TIGR00563 78 RLVLYQQLYLERVPAHAAVNEAVELAKAL-GLKGLKGLVNGVLRRFQREQVQSKDELLAEVRKLAEEYSHPEWLVKKLKK 156 (487) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999975078246788998999971-67522367888888886035765547888987411233586899999987 Q ss_pred HCCCHHHHHHHHHHHCCCCCEEEEE---CCCHHHHHHHHHHHHC-------CCCCCEECC----------------CCCC Q ss_conf 4126799999999614698366761---5998999986432102-------356611104----------------5678 Q gi|254780666|r 158 NFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVML-------PTGGIRLKE----------------LPES 211 (445) Q Consensus 158 ~~~G~~~~~~l~~~~~~p~~l~i~~---k~~~~~~~~~L~~~~~-------~~~~~~~~~----------------~~~~ 211 (445) T Consensus 157 ~~~~~~~~E~i~~~~nq~P~~~LRvN~~k~~r~~~~~~L~e~nltttamaGlPqGlrlGG~~~~~~~~~pdAv~L~~p~~ 236 (487) T TIGR00563 157 AYPGKWEAESICEANNQKPPMWLRVNQLKASREELLDLLAEENLTTTAMAGLPQGLRLGGIEGEKGDLAPDAVKLEKPIA 236 (487) T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHCCCCCH T ss_conf 24475578999998677778440213003458999999988543577763276540435614556666145664046523 Q ss_pred HHHCHHH-----HHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHH Q ss_conf 5558501-----10010134632123222356321331003556447000010---256841000105967987765443 Q gi|254780666|r 212 IVSLPGF-----AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 (445) Q Consensus 212 i~~~~~f-----~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~ 283 (445) T Consensus 237 ~~~lp~fnGevseeGwvTvQD~Saq~va~~L~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~ 316 (487) T TIGR00563 237 VTKLPGFNGEVSEEGWVTVQDASAQWVATLLDPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENL 316 (487) T ss_pred HHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH T ss_conf 44377978723168532132168999999738898874773114845704767742479720898862125788999999 Q ss_pred HCCCCCCEEEEECCCC--CCC---CC-C----CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2048874177207744--577---43-4----476689616742110011011033328866778899999999999998 Q gi|254780666|r 284 DRLHLYAEDIIEMDAF--DYC---PK-K----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 (445) Q Consensus 284 ~R~g~~~~~~~~~D~~--~~~---~~-~----~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~ 353 (445) T Consensus 317 ~RLGl~~i~~~~~~~~~~~~~~W~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP 396 (487) T TIGR00563 317 DRLGLTIIKVEEVDGDKAGPKEWLAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAP 396 (487) T ss_pred HHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 86188378877202567766544452010233314215607877443300178755566856517899999999998856 Q ss_pred HCCCCCEEEEEECCCCHHHCHHHHHHHH-----HHC-----CCCEEEC-CCCCCCCCCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 6089828999774788343999899999-----968-----8741781-3763233556643455868808988763235 Q gi|254780666|r 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSS-----PIPVELV-PLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 (445) Q Consensus 354 ~lk~gG~lvYsTCSi~~eEne~vV~~fL-----~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~ 422 (445) T Consensus 397 ~vK~GGtLvYsTCt~~p~EN~~qI~aFL~~~A~~e~cetGt~dW~sepPdlsfE~~~P~~~-~~~~~~g~lq~LP~~--- 472 (487) T TIGR00563 397 LVKKGGTLVYSTCTVLPEENEEQIEAFLNATADQEHCETGTEDWLSEPPDLSFEKRLPEKV-TESVRSGGLQILPHA--- 472 (487) T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC-CCCCCCCCCCCCCCC--- T ss_conf 5357975888614588443289999997653557875158743357888741002377888-986223630106888--- Q ss_pred CCCCCCCCCEEEEEEEEECC Q ss_conf 57778886314667654127 Q gi|254780666|r 423 IDGVSSGMDGFFAVALRRLI 442 (445) Q Consensus 423 ~~~~~~g~DGFF~A~l~k~~ 442 (445) T Consensus 473 -----~~~DGFFiA~L~Kka 487 (487) T TIGR00563 473 -----EEGDGFFIAKLKKKA 487 (487) T ss_pred -----CCCCCEEEEEEECCC T ss_conf -----787741552110379 |
All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing. |
| >KOG2360 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=294.59 Aligned_cols=383 Identities=22% Similarity=0.283 Sum_probs=246.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH Q ss_conf 99999999995599889999998511232168988999999999999960899999999984288100488999999999 Q gi|254780666|r 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 (445) Q Consensus 10 ~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~iLr~a 89 (445) T Consensus 3 ~~~~~l~~~~~~~~s~k~l~~~s~---------~q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~~--~~l 71 (413) T KOG2360 3 EAAEILRDVEKKEGSIKMLVYESS---------KQNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVHM--VVL 71 (413) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC--EEE T ss_conf 411666647764307999987651---------105399999999887644899999720243445664654353--200 Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH Q ss_conf 99999868997332562258775225875544444310221100111100000123129978999988412679999999 Q gi|254780666|r 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 (445) Q Consensus 90 ~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~~~l~~~~s~P~Wl~~~~~~~~G~~~~~~l~ 169 (445) T Consensus 72 ~~~ll~~~~~~-------------~~~~~~~~el~~~~~~~~~e~-------------~~-~~v~-~~~k~~~~~~~~l~ 123 (413) T KOG2360 72 VHDLLLSKIKR-------------SGLMIDKRELKVIRLRLILRL-------------KI-ETVM-LKKKRKVKSLRELK 123 (413) T ss_pred HHHHHHCCCCC-------------CCCEECCCHHHHHHHHHHHHH-------------HH-HHHH-HHHHHHHHHHHHHH T ss_conf 33443102465-------------322230431444448777566-------------79-9988-87631378888763 Q ss_pred HHHCCCCCEEEEECCC---HHHHHHHHHHHHCC------CC---------CCEECCCCCCHHHCHHHHHCCCEECCCCCC Q ss_conf 9614698366761599---89999864321023------56---------611104567855585011001013463212 Q gi|254780666|r 170 DACISPLYIDLTVKFD---IETWAHKLNAVMLP------TG---------GIRLKELPESIVSLPGFAEGVWWVQDASAS 231 (445) Q Consensus 170 ~~~~~p~~l~i~~k~~---~~~~~~~L~~~~~~------~~---------~~~~~~~~~~i~~~~~f~eG~~~VQD~aSq 231 (445) T Consensus 124 ~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asc 203 (413) T KOG2360 124 LTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASC 203 (413) T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHCCCCCCCCEEECCCCCCCCEEEECHHHC T ss_conf 05777775357850344741544003314445556540786054063006453027875224411211586477022103 Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-- Q ss_conf 3222356321331003556447000010---25684100010596798776544320488741772077445774344-- Q gi|254780666|r 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 (445) Q Consensus 232 l~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~-- 306 (445) T Consensus 204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~ 283 (413) T KOG2360 204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFR 283 (413) T ss_pred CHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 53654389998823554146653211299886224872132341688999999998717874532014444777810026 Q ss_pred -CCEEEECCCCCCCCHHHCCCHHH--HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf -76689616742110011011033--328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 307 -FDAVLVDAPCSSTGTIRRHPDVL--WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 307 -fD~iLlDaPCSg~Gt~rr~Pd~~--w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 284 ~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~ 362 (413) T KOG2360 284 DVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQ 362 (413) T ss_pred CEEEEEECCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HHEEEECCHHHHHHHHHHHHHHHHH T ss_conf 505998579878776522324226777535799998787799999988607753-2401102325454415999998751 Q ss_pred CCCCEEECC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEC Q ss_conf 887417813--7632335566434558688089887632355777888631466765412 Q gi|254780666|r 384 SPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 (445) Q Consensus 384 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~ 441 (445) T Consensus 363 ~p~~~~l~~kK~~p~-w~~rg~~~~~~~e~~lr~~p~--------~~~~~gffva~fer~ 413 (413) T KOG2360 363 NPDAKRLAPKKVLPA-WPHRGLSTFSGAEHCLRASPK--------STLTIGFFVALFERV 413 (413) T ss_pred CHHHHHHHHHHCCHH-HHHCCCCCCCCCCCCEECCCC--------CCCCCEEEEEEEECC T ss_conf 817766333432334-553477545421133042557--------887532799985049 |
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=597.55 Aligned_cols=334 Identities=37% Similarity=0.581 Sum_probs=280.2 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHH---HHHCCCHHHHHHHHHCCCHHHHHHHHHHHCC Q ss_conf 9973325622587752258755444443102211001111000001---2312997899998841267999999996146 Q gi|254780666|r 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFYGKERVLAISDACIS 174 (445) Q Consensus 98 ~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~~~~~~l~---~~~s~P~Wl~~~~~~~~G~~~~~~l~~~~~~ 174 (445) T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~ 80 (355) T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEILRPAFRYSHPEWLVEKLPDALGEDEAEAIAAALLR 80 (355) T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCC T ss_conf 97266778878898862101244433346787532000245555302011220639999999988264479999997156 Q ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCC-------CCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCCCCCC Q ss_conf 983667615---99899998643210235-------66111045678555850110010134632123222356321331 Q gi|254780666|r 175 PLYIDLTVK---FDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 (445) Q Consensus 175 p~~l~i~~k---~~~~~~~~~L~~~~~~~-------~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~ 244 (445) T Consensus 81 ~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~ 159 (355) T COG0144 81 PPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRI-EASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159 (355) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE-ECCCCCCCCHHHCCEEEEEECHHHHHHHHHCCCCCCCE T ss_conf 88725775264478789999864425534466655645897-15887656835604489996778766799719999796 Q ss_pred EECCCCCCCCCEEEE---CCCCCCH-HHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEEEECCCC Q ss_conf 003556447000010---2568410-0010596798776544320488741772077445774----3447668961674 Q gi|254780666|r 245 VLDLCAAPGGKTAQL---IVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPC 316 (445) Q Consensus 245 VLD~CAAPGGKT~~l---~~~~~~i-~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~iLlDaPC 316 (445) T Consensus 160 VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPC 239 (355) T COG0144 160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPC 239 (355) T ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC T ss_conf 88807999769999999668998769974498789999999999719983489951330143113455777859987999 Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 21100110110333288667788999999999999986089828999774788343999899999968874178137632 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~ 396 (445) T Consensus 240 Sg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~~~~ 318 (355) T COG0144 240 SGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPVRLP 318 (355) T ss_pred CCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHCC-CCEEECCCCC T ss_conf 877113358123203899999999999999999999844879889999023750028899999998589-9544114455 Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECC Q ss_conf 3355664345586880898876323557778886314667654127 Q gi|254780666|r 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 (445) Q Consensus 397 ~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445) T Consensus 319 ~~~~~~~~~-~~~~~~~r~~p~--------~~~~dGFFia~l~k~~ 355 (355) T COG0144 319 WGPLFEGLG-SELGKTRRLYPH--------VHGTDGFFIAKLRKKR 355 (355) T ss_pred CCCCCCCCC-CCCCCEEEECCC--------CCCCCCEEEEEEEECC T ss_conf 444444445-455661786787--------7897867999999679 |
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=530.47 Aligned_cols=286 Identities=25% Similarity=0.456 Sum_probs=244.0 Q ss_pred HCCCHHHHHHHHHCCCHH-HHHHHHHHHCCCCCEEEEEC---CCHHHHHHHHHHH-------HCCCCCCEECCC---CCC Q ss_conf 129978999988412679-99999996146983667615---9989999864321-------023566111045---678 Q gi|254780666|r 146 SIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLTVK---FDIETWAHKLNAV-------MLPTGGIRLKEL---PES 211 (445) Q Consensus 146 ~s~P~Wl~~~~~~~~G~~-~~~~l~~~~~~p~~l~i~~k---~~~~~~~~~L~~~-------~~~~~~~~~~~~---~~~ 211 (445) T Consensus 2 ~~LP~~F~~~~~~llg~~~~~~~fl~~~~~p~~~~lRvN~lK~~~~~~~~~l~~~g~~~~pvpw~~~g~~~~~~~~~~~~ 81 (471) T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPKGWTLTPIPWCEEGFWIERDDEDALP 81 (471) T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCC T ss_conf 76839999999998678403999999856998865986798799999999877659963226867870698415545678 Q ss_pred HHHCHHHHHCCCEECCCCCCCCCCCC--CCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCC Q ss_conf 55585011001013463212322235--6321331003556447000010---256841000105967987765443204 Q gi|254780666|r 212 IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 (445) Q Consensus 212 i~~~~~f~eG~~~VQD~aSql~~~~l--~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~ 286 (445) T Consensus 82 lg~~~~~~aG~~yiQe~ssm~~~~~l~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~ 161 (471) T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRC 161 (471) T ss_pred CCCCHHHHCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 88983664854999776885578885248899998999577854899999997589966999838899999999999971 Q ss_pred CCCCEEEEECCCCCCCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 88741772077445774--3447668961674211001101103332886677889999999999999860898289997 Q gi|254780666|r 287 HLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445) Q Consensus 287 g~~~~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445) T Consensus 162 G~~n~~vt~~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYS 241 (471) T PRK11933 162 GVSNVALTHFDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (471) T ss_pred CCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 99847999358667403230106679987888887335559757641898799999999999999999873889689998 Q ss_pred ECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECC Q ss_conf 747883439998999999688741781376323355664345586880898876323557778886314667654127 Q gi|254780666|r 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 (445) Q Consensus 365 TCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445) T Consensus 242 TCT~~peENE~vv~~~l~~~p~~v~~~~l~~~~p---~~~~~~~~~g~~RlwPH~~--------~GEGhF~A~LrK~~ 308 (471) T PRK11933 242 TCTLNREENQAVCLWLKETYGDAVEFESLGDLFP---GAEKALTEEGFLHVFPQIY--------DSEGFFVARLRKTA 308 (471) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCC---CCCCCCCCCCCEEECCCCC--------CCCCEEEEEEEECC T ss_conf 1799956679999999986886331033444577---7544567677478688865--------87744999998657 |
|
| >pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=520.81 Aligned_cols=261 Identities=35% Similarity=0.514 Sum_probs=228.5 Q ss_pred HHHHHCCCCCEEEEE---CCCHHHHHHHHHHHHCC-------CCCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCC Q ss_conf 999614698366761---59989999864321023-------56611104567855585011001013463212322235 Q gi|254780666|r 168 ISDACISPLYIDLTV---KFDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 (445) Q Consensus 168 l~~~~~~p~~l~i~~---k~~~~~~~~~L~~~~~~-------~~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l 237 (445) T Consensus 1 il~a~n~~~p~~lRvN~lk~~~e~~~~~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~vQD~aS~l~~~~L 80 (277) T pfam01189 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAVTVQDASSQLDAIAL 80 (277) T ss_pred CHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCHHHHCCEEEEECHHHHHHHHHH T ss_conf 94440999985999768769999999999877995898889987179726887812192655917999880677899971 Q ss_pred CCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCCEEE Q ss_conf 6321331003556447000010---25684100010596798776544320488741772077445774---34476689 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVL 311 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD~iL 311 (445) T Consensus 81 ~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~fD~vL 160 (277) T pfam01189 81 NPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRIL 160 (277) T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEEE T ss_conf 88999989883678881699999875898779983797899999999999759974799966444557434666665799 Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEC Q ss_conf 61674211001101103332886677889999999999999860898289997747883439998999999688741781 Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 (445) Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~ 391 (445) T Consensus 161 vDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eENe~vV~~fL~~~~-~~~~~ 239 (277) T pfam01189 161 LDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKYFLQKRP-DVELV 239 (277) T ss_pred ECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC-CCEEE T ss_conf 72898898634558531211999999999999999999999971769989999499998998999999998699-98990 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 376323355664345586880898876323557778886314667654 Q gi|254780666|r 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 (445) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~ 439 (445) T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~r~~P~--------~~~~dGFF~A~Lr 277 (277) T pfam01189 240 PTGLSEGKIA--LAKRIVKGGLQSLPH--------ELNRDGFFFAKLR 277 (277) T ss_pred CCCCCCCCCC--CCCCCCCCEEEECCC--------CCCCCCEEEEEEC T ss_conf 4666545433--345577990798989--------9997727999859 |
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=492.22 Aligned_cols=255 Identities=33% Similarity=0.541 Sum_probs=221.4 Q ss_pred EEEE-ECCCHHHHHHHHHHHHCC--------CCCC--EECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCC--CCCC Q ss_conf 6676-159989999864321023--------5661--1104567855585011001013463212322235632--1331 Q gi|254780666|r 178 IDLT-VKFDIETWAHKLNAVMLP--------TGGI--RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL--NNLS 244 (445) Q Consensus 178 l~i~-~k~~~~~~~~~L~~~~~~--------~~~~--~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~--~g~~ 244 (445) T Consensus 1 IRvNTLKi~~~~l~~~L~~~G~~LtP~p~~~~~~~~~~v~~s~~~iG~tPEyL~G~y~~q~aSSmiPp~aL~p~Gn~~~~ 80 (284) T TIGR00446 1 IRVNTLKIEVEDLLERLENRGVKLTPKPTCEEGFFIEEVKESPLSIGSTPEYLLGYYYVQEASSMIPPLALEPEGNEKER 80 (284) T ss_pred CCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCE T ss_conf 90012125889999887744700067220027427765402677646516788537899878736760301778768887 Q ss_pred EECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCC----CCEEEECCCC Q ss_conf 003556447000010---25684100010596798776544320488741772077445774-344----7668961674 Q gi|254780666|r 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL----FDAVLVDAPC 316 (445) Q Consensus 245 VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~----fD~iLlDaPC 316 (445) T Consensus 81 vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eifFD~iLLDAPC 160 (284) T TIGR00446 81 VLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIFFDRILLDAPC 160 (284) T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEEEEEEEECCCC T ss_conf 99974088964899999865885189973763410667865556210033324137630012314430343214525787 Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE-- Q ss_conf 21100110110333288667788999999999999986089----828999774788343999899999968874178-- Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL-- 390 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~----gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~-- 390 (445) T Consensus 161 SG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYSTCsl~~eENE~V~dy~L~~r~~v~e~~~ 240 (284) T TIGR00446 161 SGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYSTCSLEVEENEEVVDYLLRKRPDVVEEVN 240 (284) T ss_pred CCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEC T ss_conf 98833765723311477245776467679999999875044566688889850327712274899998617997077523 Q ss_pred -CCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEE Q ss_conf -13763233556643-455868808988763235577788863146676541 Q gi|254780666|r 391 -VPLNSAYWKSIDMA-MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 (445) Q Consensus 391 -~~~~~~~~~~~~~~-~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k 440 (445) T Consensus 241 ~~~~G~E~~~~~~~k~y~~~v~~~lR~~P~--------~~~~~GFFVAklRK 284 (284) T TIGR00446 241 LLVKGDEAFTANKGKEYSEEVKKALRVFPQ--------SYDCEGFFVAKLRK 284 (284) T ss_pred CCHHCCCCCCCCCCCCCCHHHHHHCCCCCC--------CCCCCCEEEEEECC T ss_conf 300001134665421002002100002878--------88977017754129 |
In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . . |
| >KOG1122 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=481.71 Aligned_cols=384 Identities=26% Similarity=0.340 Sum_probs=289.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCC Q ss_conf 898899999999999996089999999998-42-8810048899999999999999868-99733256225877522587 Q gi|254780666|r 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFV-LI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 (445) Q Consensus 41 L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~-~~-~~~~~~~~~~~~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~ 117 (445) T Consensus 35 ~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~~~~~~P----~L~~v~~~~~~-~~ 104 (460) T KOG1122 35 LDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEEEKDSVP----DLQNVDLRIVE-LV 104 (460) T ss_pred HHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCC----CCCHHHHHHHH-HH T ss_conf 55664322-4667777877640451256788752234345422375322----222234687----63103577655-01 Q ss_pred CCCCCCCCCHHHHHHH--CCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECC---CHHHHHHH Q ss_conf 5544444310221100--111100000123129978999988412679999999961469836676159---98999986 Q gi|254780666|r 118 RHFAKLVNSILRRVSR--EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHK 192 (445) Q Consensus 118 ~~~~~~vNAVLR~~~r--~~~~~~~~l~~~~s~P~Wl~~~~~~~~G~~~~~~l~~~~~~p~~l~i~~k~---~~~~~~~~ 192 (445) T Consensus 105 ~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~ 184 (460) T KOG1122 105 PVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVE 184 (460) T ss_pred HHHCCHHCCCCCCCCHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH T ss_conf 21033001465443056679998744150004088999875454569999999871057898168724551013447999 Q ss_pred HHHHHC--------CCCCCEECCCCCCHHHCHHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE---CC Q ss_conf 432102--------3566111045678555850110010134632123222356321331003556447000010---25 Q gi|254780666|r 193 LNAVML--------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 (445) Q Consensus 193 L~~~~~--------~~~~~~~~~~~~~i~~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~ 261 (445) T Consensus 185 L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMk 264 (460) T KOG1122 185 LSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMK 264 (460) T ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCEEECCCCCCCEEEECCCCCCCEECCHHCCCCCHHHHHHHHHC T ss_conf 97456676654400042089953731157753323551242267623524520799887112121079950778999872 Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHH Q ss_conf 6841000105967987765443204887417720774457743---4476689616742110011011033328866778 Q gi|254780666|r 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 (445) Q Consensus 262 ~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~ 338 (445) T Consensus 265 n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~ 344 (460) T KOG1122 265 NTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDIL 344 (460) T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 77469961354377999998899748774489736763255333676423145348777775554551013301299998 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCC Q ss_conf 89999999999999860898289997747883439998999999688741781376323355664345586880898876 Q gi|254780666|r 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 (445) Q Consensus 339 ~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~ 418 (445) T Consensus 345 ~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG~~G~~~-----~~--~~~ps 416 (460) T KOG1122 345 RYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIGGEGRFR-----GG--RFHPS 416 (460) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHCC-CEEECCCCCCCCCCCCCC-----CC--CCCCC T ss_conf 72799999999987311577089998532260122899999997098-627525656678887646-----75--45753 Q ss_pred --CCCCCCCCCCCCCEEEEEEEEECC Q ss_conf --323557778886314667654127 Q gi|254780666|r 419 --MLEKIDGVSSGMDGFFAVALRRLI 442 (445) Q Consensus 419 --~~~~~~~~~~g~DGFF~A~l~k~~ 442 (445) T Consensus 417 l~~~~r~yPh~hnmdgffvaKl~k~s 442 (460) T KOG1122 417 LKLTRRFYPHVHNMDGFFVAKLKKAS 442 (460) T ss_pred HHHEEEECCCCCCCCHHHHHHHHHHC T ss_conf 33403306755577517999988650 |
|
| >KOG2198 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=318.24 Aligned_cols=180 Identities=37% Similarity=0.533 Sum_probs=155.1 Q ss_pred HHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC------CCCCHHHHHCCHHHHHHHHHHHHCCCCCC Q ss_conf 011001013463212322235632133100355644700001025------68410001059679877654432048874 Q gi|254780666|r 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV------SGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 (445) Q Consensus 217 ~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~------~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~ 290 (445) T Consensus 131 e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~ 210 (375) T KOG2198 131 ETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN 210 (375) T ss_pred HCCCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCC T ss_conf 21445211242442264020226799844420138984489999997237777736753457889999999985269843 Q ss_pred EEEEECCCCCCCC----------CCCCCEEEECCCCCCCCHHHCCCHHHHC-CCHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 1772077445774----------3447668961674211001101103332-8866778899999999999998608982 Q gi|254780666|r 291 EDIIEMDAFDYCP----------KKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGG 359 (445) Q Consensus 291 ~~~~~~D~~~~~~----------~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~-~~~~~l~~l~~~Q~~iL~~a~~~lk~gG 359 (445) T Consensus 211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375) T KOG2198 211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375) T ss_pred EEEECCCCEECCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 33431211005641014676033441253687145689843022802766655541135973899999999998725787 Q ss_pred EEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCC Q ss_conf 8999774788343999899999968874178137632 Q gi|254780666|r 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 (445) Q Consensus 360 ~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~ 396 (445) T Consensus 291 ~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~ 327 (375) T KOG2198 291 RLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGD 327 (375) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC T ss_conf 7999425787200279999999983685432230365 |
|
| >pfam05175 MTS Methyltransferase small domain | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-11 Score=103.75 Aligned_cols=131 Identities=21% Similarity=0.224 Sum_probs=110.4 Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC Q ss_conf 4632123222356321331003556447000010256--84100010596798776544320488741772077445774 Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445) Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445) T Consensus 16 lD~Gt~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~~~ 95 (170) T pfam05175 16 LDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAVE 95 (170) T ss_pred CCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 79899999970897789949997764829899999978986798515449999999999998099848999744666577 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHC Q ss_conf 3447668961674211001101103332886677889999999999999860898289997747883439 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEn 373 (445) T Consensus 96 ~~~fD~IvsNPP~------h---------~g~--~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y~~ 148 (170) T pfam05175 96 PGKFDLIISNPPF------H---------AGK--ATDYDVAQRFIAGAARHLKPGGELWIVANRHLGYPS 148 (170) T ss_pred CCCEEEEEECCCC------C---------CCC--CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH T ss_conf 8866089989772------1---------142--032899999999999961649799999989999479 |
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-11 Score=101.47 Aligned_cols=152 Identities=26% Similarity=0.359 Sum_probs=117.6 Q ss_pred HHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC--EE Q ss_conf 5011001013463212322235632133100355644700001025684-10001059679877654432048874--17 Q gi|254780666|r 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 (445) Q Consensus 216 ~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~--~~ 292 (445) T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~ 271 (393) T COG1092 195 DGLKTGFFLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHR 271 (393) T ss_pred CCCCCEEEHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEE T ss_conf 7420045287679999986131---6876788646676999999866997148982657899999999986299710105 Q ss_pred EEECCCCCCCC-----CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 72077445774-----3447668961674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 293 IIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 293 ~~~~D~~~~~~-----~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 272 ~i~~Dvf~~l~~~~~~g~~fDlIilDPP-----sF~r~k~~~--------~~~~rdy~~l~~~~~~lL~pgG~l~~~s~~ 338 (393) T COG1092 272 FIVGDVFKWLRKAERRGEKFDLIILDPP-----SFARSKKQE--------FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393) T ss_pred EEHHHHHHHHHHHHHCCCCCCEEEECCC-----CCCCCCCCC--------HHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 6722399999999855995568997881-----003582100--------538989999999999970799689999367 Q ss_pred CCHHHCH--HHHHHHHHH Q ss_conf 8834399--989999996 Q gi|254780666|r 368 LDKQDSE--EVVQKVLRS 383 (445) Q Consensus 368 i~~eEne--~vV~~fL~~ 383 (445) T Consensus 339 ~~~~~~~f~~~i~~a~~~ 356 (393) T COG1092 339 RHFSSDLFLEIIARAAAA 356 (393) T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 766989999999999986 |
|
| >pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=91.46 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=111.5 Q ss_pred CHHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCC--CE Q ss_conf 85011001013463212322235632133100355644700001025684-1000105967987765443204887--41 Q gi|254780666|r 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLY--AE 291 (445) Q Consensus 215 ~~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~--~~ 291 (445) T Consensus 100 ~~gqktG~flDqR~nR~~~~~~---~~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~ 176 (286) T pfam10672 100 GRNQNFGLFLDMRLGRRWVQEN---AKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRV 176 (286) T ss_pred CCCCCCEEEHHHHHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCE T ss_conf 4586667834238889999987---2898325311478699999876798779999198899999999999769995436 Q ss_pred EEEECCCCCCC----CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 77207744577----43447668961674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 292 DIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 292 ~~~~~D~~~~~----~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 177 ~~~~~D~f~~l~~~~~~~~fD~VilDPPsf~k~-------------~~~~~---~~Y~~l~~~a~~ll~~gG~L~~~s~s 240 (286) T pfam10672 177 SFLGHDIFKSWGKIKKLGPYDLVIIDPPSFQKG-------------SFALT---KDYKKILRRLPELLVEGGTVLACVNS 240 (286) T ss_pred EEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCC-------------HHHHH---HHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 999830999999986179998799879998887-------------24788---78999999999860899689998188 Q ss_pred CCHHHCHHHHHHHHHHCC Q ss_conf 883439998999999688 Q gi|254780666|r 368 LDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 368 i~~eEne~vV~~fL~~~~ 385 (445) T Consensus 241 ~~l~~-~~~~~~~~~~~~ 257 (286) T pfam10672 241 PAVGP-DFLIEEMAEEAP 257 (286) T ss_pred CCCCH-HHHHHHHHHHCC T ss_conf 65899-999999998587 |
Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.9e-09 Score=86.19 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=106.4 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE Q ss_conf 23563213310035564470000102--568410001059679877654432048874177207744577434-476689 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445) T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiF 107 (187) T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIF 107 (187) T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCEEE T ss_conf 86088999989995788668999999739885599992588899999999998499967999546457636999999999 Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEEC Q ss_conf 61674211001101103332886677889999999999999860898289997747883439998999999688741781 Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 (445) Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~ 391 (445) T Consensus 108 IG----Gg~~----------------------i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~~~~~~~g~~-ei~ 157 (187) T COG2242 108 IG----GGGN----------------------IEEILEAAWERLKPGGRLVANAI---TLETLAKALEALEQLGGR-EIV 157 (187) T ss_pred EC----CCCC----------------------HHHHHHHHHHHCCCCCEEEEEEE---CHHHHHHHHHHHHHCCCC-EEE T ss_conf 87----9877----------------------78999999997186876999860---088899999999972985-699 Q ss_pred CCCC Q ss_conf 3763 Q gi|254780666|r 392 PLNS 395 (445) Q Consensus 392 ~~~~ 395 (445) T Consensus 158 ~v~i 161 (187) T COG2242 158 QVQI 161 (187) T ss_pred EEEE T ss_conf 9984 |
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-09 Score=89.25 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=96.0 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCE Q ss_conf 2235632133100355644700001025---684100010596798776544320488741772077445774-344766 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~ 309 (445) T Consensus 12 l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~lp~~d~sfD~ 90 (241) T PRK08317 12 FELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL-SNVEFVRGDADGLPFPDESFDA 90 (241) T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCCCE T ss_conf 973699997999996641749999999974999789999698899999999986228-9649995546435898887045 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-----EEECCCCHHHCHHHHHHHHHH Q ss_conf 89616742110011011033328866778899999999999998608982899-----977478834399989999996 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-----FSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-----YsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 91 v~~~------~~l~h----------------~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~-~~~~~~~i~~~ 146 (241) T PRK08317 91 VRSD------RVLQH----------------LEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSG-DRALMRKILNF 146 (241) T ss_pred EEHH------HHHHH----------------CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CHHHHHHHHHH T ss_conf 6221------15762----------------258999999999981888389999667886742898-88999999999 |
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=81.11 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=103.6 Q ss_pred CCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEC Q ss_conf 356321331003556447000010--256841000105967987765443204887417720774457743447668961 Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 (445) Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlD 313 (445) T Consensus 25 kL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap~~l-~~~pD~vFIG 103 (186) T PRK08287 25 KLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEAPITL-TGKADAIFMG 103 (186) T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHC-CCCCCEEEEE T ss_conf 719999999999578877899999997899889999379899999999899729998799937781103-5789849997 Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC-CEEECC Q ss_conf 6742110011011033328866778899999999999998608982899977478834399989999996887-417813 Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVP 392 (445) Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~-~~~~~~ 392 (445) T Consensus 104 G----sg--------------g~l-------~~il~~~~~~L~~gGriVinavtl---et~~~a~~~~~~~~~~~~e~~q 155 (186) T PRK08287 104 G----SG--------------GHL-------TAIIDWALGHLHPGGRLVLNFILQ---ENLHSALAHLEKIGACELDCVQ 155 (186) T ss_pred C----CC--------------CCH-------HHHHHHHHHHCCCCCEEEEEEEEH---HHHHHHHHHHHHCCCCCEEEEE T ss_conf 4----78--------------988-------999999997579998999982608---7799999999976997615999 Q ss_pred CCCC Q ss_conf 7632 Q gi|254780666|r 393 LNSA 396 (445) Q Consensus 393 ~~~~ 396 (445) T Consensus 156 v~vs 159 (186) T PRK08287 156 LQVS 159 (186) T ss_pred EEEE T ss_conf 9901 |
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=82.50 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=107.9 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCC--CCCCC Q ss_conf 2356321331003556447000010---25684100010596798776544320488-741772077445774--34476 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP--KKLFD 308 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~--~~~fD 308 (445) T Consensus 34 ~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~~l~p~pD 113 (198) T PRK00377 34 SKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLPKLNPKSD 113 (198) T ss_pred HHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCC T ss_conf 97099998999991770329999999966978759999678889999999999809998859995254887720899889 Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCE Q ss_conf 68961674211001101103332886677889999999999999860898289997747883439998999999688741 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~ 388 (445) T Consensus 114 ~vFIGG~------------------~g~l-------~~il~~~~~~L~~gGriVinaVtl---et~~~~~~~l~~~~~~~ 165 (198) T PRK00377 114 RYFIGGG------------------GEEL-------PEIIQAALEKIGKGGRIVADAILL---ESLNKALSALEELGYKY 165 (198) T ss_pred EEEEECC------------------CCCH-------HHHHHHHHHHCCCCCEEEEEEECH---HHHHHHHHHHHHCCCCC T ss_conf 8999788------------------7778-------999999998579998999983629---88999999999769981 Q ss_pred EECCCCCCCC Q ss_conf 7813763233 Q gi|254780666|r 389 ELVPLNSAYW 398 (445) Q Consensus 389 ~~~~~~~~~~ 398 (445) T Consensus 166 ev~qv~vsr~ 175 (198) T PRK00377 166 EVTEVIIAKG 175 (198) T ss_pred EEEEEEEEEC T ss_conf 4999994647 |
|
| >pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-09 Score=88.03 Aligned_cols=125 Identities=25% Similarity=0.371 Sum_probs=93.6 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCC Q ss_conf 2223563213310035564470000102---5684100010596798776544320488741772077445774-34476 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD 308 (445) T Consensus 39 ~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d~sfD 118 (233) T pfam01209 39 TMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFD 118 (233) T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC T ss_conf 99861899999899825405889999999849997499996999999999999985699983699821666886665657 Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH Q ss_conf 68961674211001101103332886677889999999999999860898289997747883439998999999 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 119 ~v~~-----~fg-lrn~~d---------------~-~~al~E~~RVLKPGG~l~i--lefs~P~~~-~~~~~~~ 167 (233) T pfam01209 119 IVTI-----SFG-LRNFPD---------------Y-LKVLKEAFRVLKPGGRVVC--LEFSKPENP-LLSQAYE 167 (233) T ss_pred HHHH-----HHH-HHCCCC---------------H-HHHHHHHHHHCCCCCEEEE--EECCCCCCH-HHHHHHH T ss_conf 3142-----101-212588---------------8-9999999987278978999--978888777-9999999 |
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=79.20 Aligned_cols=121 Identities=19% Similarity=0.267 Sum_probs=97.0 Q ss_pred CCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CCCCEEE Q ss_conf 356321331003556447000010--256841000105967987765443204887417720774457743--4476689 Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVL 311 (445) Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--~~fD~iL 311 (445) T Consensus 35 kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~p~pD~vF 114 (196) T PRK07402 35 QLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRIC 114 (196) T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEE T ss_conf 70899999999947887799999998789988999976888999999989972999879997263666840899999999 Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 61674211001101103332886677889999999999999860898289997747883439998999999688 Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 115 IGG----g~---------------~l-------~~il~~~~~~L~pgGriVinaitL---etl~~~~~~l~~~~ 159 (196) T PRK07402 115 IEG----GR---------------PI-------KEILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQLQ 159 (196) T ss_pred ECC----CC---------------CH-------HHHHHHHHHHCCCCCEEEEEEEEH---HHHHHHHHHHHHCC T ss_conf 848----96---------------88-------999999998679998999985709---88999999999738 |
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=84.18 Aligned_cols=116 Identities=30% Similarity=0.321 Sum_probs=88.1 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCC-CCCCCE Q ss_conf 235632133100355644700001025---684100010596798776544320488-741772077445774-344766 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP-KKLFDA 309 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~-~~~fD~ 309 (445) T Consensus 45 ~~l~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~ 124 (239) T PRK00216 45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDA 124 (239) T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC T ss_conf 86278999989884577638799999972997679999198899999999999738988850798235568887666765 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH Q ss_conf 89616742110011011033328866778899999999999998608982899977478834399 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445) T Consensus 125 v~-----~~f~-l~~~~d---------~-------~~~l~E~~RVLkPGG~l~ilefs--~p~~~ 165 (239) T PRK00216 125 VT-----IAFG-LRNVPD---------I-------DKALREMYRVLKPGGRLVILEFS--KPTNP 165 (239) T ss_pred CC-----CCCE-EEECCC---------H-------HHHHHHHHHHCCCCEEEEEEECC--CCCCH T ss_conf 00-----2615-671486---------7-------99999999876648089999758--99976 |
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.4e-08 Score=77.63 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=89.9 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECC Q ss_conf 56321331003556447000010256-84100010596798776544320488741772077445774-34476689616 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDa 314 (445) T Consensus 48 l~L~~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~~--~~v~f~~~d~~~~~f~d~sFDvV~--- 122 (263) T PTZ00098 48 IELDANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQDK--AKIEFEAKDILKKDFPENNFDLIY--- 122 (263) T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCCCCEEEEE--- T ss_conf 488999868886888788999999974987999858899999999855125--854899678536778867455898--- Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCCHHHCHHHHHHHHHH Q ss_conf 742110011011033328866778899999999999998608982899977--478834399989999996 Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN--CSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT--CSi~~eEne~vV~~fL~~ 383 (445) T Consensus 123 --------S~--dailHip~~D-------K~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~r 176 (263) T PTZ00098 123 --------SR--DAILHLSLAD-------KKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKKR 176 (263) T ss_pred --------EE--HHHHCCCHHH-------HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC T ss_conf --------75--0223088243-------999999999984688789997501357899739899999846 |
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-08 Score=81.15 Aligned_cols=117 Identities=28% Similarity=0.335 Sum_probs=91.6 Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEE Q ss_conf 356321331003556447000010256--84100010596798776544320488741772077445774-344766896 Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 (445) Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLl 312 (445) T Consensus 46 ~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238) T COG2226 46 LLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238) T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCEEEE T ss_conf 60789998799966873199999999658844999979999999999874324766327997056549888876588986 Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHH Q ss_conf 1674211001101103332886677889999999999999860898289997747883439998 Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 (445) Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~v 376 (445) T Consensus 126 ~f---g---lrnv~---------d~-------~~aL~E~~RVlKpgG~~--~vle~~~p~~~~~ 165 (238) T COG2226 126 SF---G---LRNVT---------DI-------DKALKEMYRVLKPGGRL--LVLEFSKPDNPVL 165 (238) T ss_pred EE---H---HHCCC---------CH-------HHHHHHHHHHHCCCEEE--EEEECCCCCCCHH T ss_conf 51---2---35278---------78-------99999998762687499--9987689986016 |
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=76.84 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=100.6 Q ss_pred CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 33100355644700001025--6841000105967987765443204887417720774457743447668961674211 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445) T Consensus 110 ~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~~~~~fDlIVSNPPYI~~ 189 (277) T PRK09328 110 PCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSALSGQQFAMIVSNPPYIDA 189 (277) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCEEEECCCCCCC T ss_conf 88189954556999999998677989999648999999999999980988699994475211378777889978998770 Q ss_pred CHHH-------CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 0011-------01103332886677889999999999999860898289997747883439998999999688 Q gi|254780666|r 320 GTIR-------RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 320 Gt~r-------r~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 190 ~~~~~~~~~v~~EP~~AL~gg~dG----l~~~~~ii~~a~~~L~~~G~l~~E---ig~~-Q~~~v~~l~~~~g 254 (277) T PRK09328 190 QDPHLQQGDVRFEPLSALVAADNG----MADLAHIIEQARQYLVPGGWLLLE---HGWQ-QGEAVRQLFIRAG 254 (277) T ss_pred CHHHHCCHHCCCCCHHHHHCCCCH----HHHHHHHHHHHHHHCCCCCEEEEE---ECHH-HHHHHHHHHHHCC T ss_conf 003438242166838998179758----999999999999844669899999---6815-8999999999679 |
|
| >pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.8e-08 Score=77.85 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=96.7 Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCC Q ss_conf 01346321232223563213310035564470000102---56841000105967987765443204887-417720774 Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA 298 (445) Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~ 298 (445) T Consensus 86 iYpkD~s--~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv 163 (309) T pfam08704 86 LYTPDIS--LIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDV 163 (309) T ss_pred ECCCCHH--HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCH T ss_conf 5560099--99998098999999983678429999999974888659998447899999999998749875058898520 Q ss_pred CCCC----CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEE-EEECCCCHHH Q ss_conf 4577----434476689616742110011011033328866778899999999999998608-982899-9774788343 Q gi|254780666|r 299 FDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQD 372 (445) Q Consensus 299 ~~~~----~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk-~gG~lv-YsTCSi~~eE 372 (445) T Consensus 164 ~~~gf~~~~~~~~D~VfLDlp------------~PW---------------~ai~~~~~~Lk~~Gg~l~~f~P~i----- 211 (309) T pfam08704 164 CKSGFDTEVSNKADAVFLDLP------------APW---------------EAIPHAAKALKVEGGRLCSFSPCI----- 211 (309) T ss_pred HCCCCCCCCCCCCCEEEECCC------------CHH---------------HHHHHHHHHHCCCCCEEEEECCCH----- T ss_conf 013666445664358997589------------979---------------988999986068996899991989----- Q ss_pred CHHHHHHH---HHHCC Q ss_conf 99989999---99688 Q gi|254780666|r 373 SEEVVQKV---LRSSP 385 (445) Q Consensus 373 ne~vV~~f---L~~~~ 385 (445) T Consensus 212 --eQv~r~~~aL~~~g 225 (309) T pfam08704 212 --EQVQRTCLALAALG 225 (309) T ss_pred --HHHHHHHHHHHHCC T ss_conf --99999999999779 |
GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. |
| >TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=75.81 Aligned_cols=139 Identities=27% Similarity=0.447 Sum_probs=103.5 Q ss_pred CCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 33100355644700001025--6841000105967987765443204887417720774457743447668961674211 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445) T Consensus 88 ~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYI~~ 167 (251) T TIGR03534 88 PLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEPLPGGKFDLIVSNPPYIPE 167 (251) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCEEEECCCCCCH T ss_conf 98699955671699999999679978999989879999999999980998268651314321568986689978998874 Q ss_pred CHHHC-CCHHHHCCCHH-HH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 00110-11033328866-77---889999999999999860898289997747883439998999999688 Q gi|254780666|r 320 GTIRR-HPDVLWTRDTD-DI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 320 Gt~rr-~Pd~~w~~~~~-~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 168 ~e~~~l~~eV~~~-EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E---ig~-~q~~~v~~l~~~~g 233 (251) T TIGR03534 168 ADIHLLDPEVRFH-EPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLE---IGY-DQGEAVRALFEAAG 233 (251) T ss_pred HHHHHCCCHHCCC-CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE---ECH-HHHHHHHHHHHHCC T ss_conf 5666328601026-729997179846999999999999853679889999---683-78999999999689 |
Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=75.30 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=103.4 Q ss_pred CCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCC Q ss_conf 213310035564470000102--568410001059679877654432048874-17720774457743447668961674 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445) T Consensus 134 ~~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l~~~kFDlIVSNPPY 213 (503) T PRK01544 134 DKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIGKQKFDFIVSNPPY 213 (503) T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCCCCEEEECCCC T ss_conf 55772788466679999999986789989999898999999999999808820179996553101588872479838998 Q ss_pred CCCCHHH--------CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--------ECCCCHHHC--HHHHH Q ss_conf 2110011--------01103332886677889999999999999860898289997--------747883439--99899 Q gi|254780666|r 317 SSTGTIR--------RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS--------NCSLDKQDS--EEVVQ 378 (445) Q Consensus 317 Sg~Gt~r--------r~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs--------TCSi~~eEn--e~vV~ 378 (445) T Consensus 214 I~~~e~~~L~~eV~~yEP~lAL~ggeDGL~----~Yr~Ia~~a~~~Lkp~G~l~lEIGy~Q~e~V~~IF~~~gy~~~~~~ 289 (503) T PRK01544 214 ISHSEKSEMAIETINYEPSIALFAEEDGLQ----AYFIIAENAKQFLKPNGKIILEIGFKQAEAVTQIFLDHGYNIDSIY 289 (503) T ss_pred CCHHHHHHCCHHHHCCCCHHHHCCCCCCHH----HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHH T ss_conf 875666652766531693788648876289----9999999889852889889999787868999999996594377776 Q ss_pred HHHHHCCCCEEECCCCCCC Q ss_conf 9999688741781376323 Q gi|254780666|r 379 KVLRSSPIPVELVPLNSAY 397 (445) Q Consensus 379 ~fL~~~~~~~~~~~~~~~~ 397 (445) T Consensus 290 kdl~~~~rvi~~~~~~~~~ 308 (503) T PRK01544 290 KDLQSHNRVIEISPINLNR 308 (503) T ss_pred HHHCCCCEEEEECCCCCCH T ss_conf 6650576289962421156 |
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=74.39 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=107.1 Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC Q ss_conf 4632123222356321331003556447000010256--84100010596798776544320488741772077445774 Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445) Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445) T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~ 222 (300) T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE 222 (300) T ss_pred CCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC T ss_conf 68388999973775569968870788429999999868987289982669999998876997398763799812446654 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 223 -~kfd~IisNPPf------h---------~G~~v--~~~~~~~ii~~A~~~L~~gGeL~iVan~~l~y------~~~L~~ 278 (300) T COG2813 223 -GKFDLIISNPPF------H---------AGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPY------EKKLKE 278 (300) T ss_pred -CCCCEEEECCCC------C---------CCCCH--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH------HHHHHH T ss_conf -400689848884------6---------77101--67889999999997604597799997588896------899998 Q ss_pred C Q ss_conf 8 Q gi|254780666|r 384 S 384 (445) Q Consensus 384 ~ 384 (445) T Consensus 279 ~ 279 (300) T COG2813 279 L 279 (300) T ss_pred H T ss_conf 6 |
|
| >pfam01170 UPF0020 Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=74.36 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=93.4 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEE--ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC-CCCCCCEE Q ss_conf 235632133100355644700001--02568410001059679877654432048874-177207744577-43447668 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC-PKKLFDAV 310 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~--l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~-~~~~fD~i 310 (445) T Consensus 22 ~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~d~I 101 (171) T pfam01170 22 NLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTI 101 (171) T ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEE T ss_conf 98589999978868998789999999961358953675879999999999998289984699976665387987883189 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH Q ss_conf 9616742110011011033328866778899999999999998608982899977478834 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445) T Consensus 102 v~nPP------YG~r------~~--~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~~ 146 (171) T pfam01170 102 VTDPP------YGIR------IG--SKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKDF 146 (171) T ss_pred EECCC------CCCC------CC--CHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHHH T ss_conf 98898------2011------36--545699999999999998689--9789999686899 |
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-07 Score=71.44 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=107.2 Q ss_pred HHCCCEECCCCCCCCCCCCC---------CCCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCC Q ss_conf 10010134632123222356---------321331003556447000010256841-00010596798776544320488 Q gi|254780666|r 219 AEGVWWVQDASASIPVQLFG---------TLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHL 288 (445) Q Consensus 219 ~eG~~~VQD~aSql~~~~l~---------~~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~ 288 (445) T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v 236 (341) T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV 236 (341) T ss_pred CCCEEEEECHHHEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 18889997247848778744789999863069988998357865401246654786399994598999999999985576 Q ss_pred CC-EEEEECCCCCCCCC-CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE- Q ss_conf 74-17720774457743-4476689616742110011011033328866778899999999999998608982899977- Q gi|254780666|r 289 YA-EDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN- 365 (445) Q Consensus 289 ~~-~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT- 365 (445) T Consensus 237 ~~~v~~i~gD~rev~~~~~~aDrIim~~p~--------------------------~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341) T COG2520 237 EGRVEPILGDAREVAPELGVADRIIMGLPK--------------------------SAHEFLPLALELLKDGGIIHYYEF 290 (341) T ss_pred CCEEEEEECCHHHHHHCCCCCCEEEECCCC--------------------------CCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 551567966488850204667889838987--------------------------202338999998514867999962 Q ss_pred CCCCHHH--CHHHHHHHHHHC Q ss_conf 4788343--999899999968 Q gi|254780666|r 366 CSLDKQD--SEEVVQKVLRSS 384 (445) Q Consensus 366 CSi~~eE--ne~vV~~fL~~~ 384 (445) T Consensus 291 ~~e~~~~~~~~~~i~~~~~~~ 311 (341) T COG2520 291 VPEDDIEERPEKRIKSAARKG 311 (341) T ss_pred CCHHHCCCCHHHHHHHHHHHC T ss_conf 243411112599999987643 |
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-07 Score=74.67 Aligned_cols=138 Identities=20% Similarity=0.269 Sum_probs=109.0 Q ss_pred HHCHH-HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCC Q ss_conf 55850-11001013463212322235632133100355644700001025--6841000105967987765443204887 Q gi|254780666|r 213 VSLPG-FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445) Q Consensus 213 ~~~~~-f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445) T Consensus 170 ~slPGVFS~~~l---D~GS~lLL~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~ 246 (342) T PRK09489 170 KTLPGVFSRDGL---DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLE 246 (342) T ss_pred ECCCCCCCCCCC---CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC T ss_conf 336875789997---87999999737832488478606781799999998699976999968899999999989980988 Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 41772077445774344766896167421100110110333288667788999999999999986089828999774788 Q gi|254780666|r 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 290 ~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 247 ~-~v~~sd~~~~v-~~~fD~IvsNPPF------H~--G---~~~~~------~i~~~fi~~A~~~L~~gG~L~iVANr~L 307 (342) T PRK09489 247 G-EVFASNVFSEI-KGRFDMIISNPPF------HD--G---IQTSL------DAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342) T ss_pred C-EEEECCCCCCC-CCCCCEEEECCCC------CC--C---CCCCH------HHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 6-89975644565-5678989968852------15--7---52658------9999999999986124988999981898 Q ss_pred HHH Q ss_conf 343 Q gi|254780666|r 370 KQD 372 (445) Q Consensus 370 ~eE 372 (445) T Consensus 308 pY~ 310 (342) T PRK09489 308 PYP 310 (342) T ss_pred CCH T ss_conf 968 |
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-07 Score=74.81 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=104.0 Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC-C-CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCC-- Q ss_conf 123222356321331003556447000010256-8-410001059679877654432048874-17720774457743-- Q gi|254780666|r 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-G-AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK-- 304 (445) Q Consensus 230 Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~-- 304 (445) T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248) T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248) T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCC T ss_conf 99997652656687698836894689999745587780799981799999999988618613401676430887654236 Q ss_pred -CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHH-----HHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH Q ss_conf -447668961674211001101103332886677889999-----99999999986089828999774788343999899 Q gi|254780666|r 305 -KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF-----QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445) Q Consensus 305 -~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~-----Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445) T Consensus 113 ~~~fD~Ii~NPPyf~~~~~-~~--------~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V----~r~erl~ei~ 179 (248) T COG4123 113 FASFDLIICNPPYFKQGSR-LN--------ENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV----HRPERLAEII 179 (248) T ss_pred CCCCCEEEECCCCCCCCCC-CC--------CCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE----ECHHHHHHHH T ss_conf 5654789959898787533-48--------674665566322288999999999974679789999----5588889999 Q ss_pred HHHHHCC Q ss_conf 9999688 Q gi|254780666|r 379 KVLRSSP 385 (445) Q Consensus 379 ~fL~~~~ 385 (445) T Consensus 180 ~~l~~~~ 186 (248) T COG4123 180 ELLKSYN 186 (248) T ss_pred HHHHHCC T ss_conf 9998669 |
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=67.36 Aligned_cols=120 Identities=25% Similarity=0.269 Sum_probs=83.0 Q ss_pred CCCCCEECCCCCCCCCEEE---ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------CCCCC Q ss_conf 2133100355644700001---02568410001059679877654432048874177207744577---------43447 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------PKKLF 307 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~---l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~---------~~~~f 307 (445) T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~---------~--pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~ 118 (209) T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D--PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC---------C--CCCCCEEECCCCCCHHHHHHHHHHHCCCCC T ss_conf 78998998068997578999997399973999865304---------5--378967640344588999999998589873 Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 66896167421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 119 DvVlSDmAPn~tG~~~-----------~D~~~s~~L~~~al~~a~~~Lk~gG~fv---~K~F~G~~~~~~~~~~k~~ 181 (209) T PRK11188 119 DVVMSDMAPNMSGTPA-----------VDIPRAMYLVELALDMCRQVLAPGGSFV---VKVFQGEGFDEYLREIRSL 181 (209) T ss_pred CEEECCCCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEECCCCHHHHHHHHHCC T ss_conf 0896666656678703-----------3599999999999999998626798899---9996487999999999702 |
|
| >pfam02384 N6_Mtase N-6 DNA Methylase | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=67.01 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=105.3 Q ss_pred HHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC----C-----CCCCHHHHHCCHHHHHHHHHHHHCCCCC Q ss_conf 100101346321232223563213310035564470000102----5-----6841000105967987765443204887 Q gi|254780666|r 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----V-----SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445) Q Consensus 219 ~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~----~-----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445) T Consensus 24 ~~GeffTPr~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~ 103 (312) T pfam02384 24 SGGEFYTPREVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE 103 (312) T ss_pred CCCEECCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 58635887899999999828999998821687733789999999998437855655636889989999999999984798 Q ss_pred --CEEEEECCCCCCC---CCCCCCEEEECCCCCCCCHHHCCC--HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf --4177207744577---434476689616742110011011--033328866778899999999999998608982899 Q gi|254780666|r 290 --AEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHP--DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445) Q Consensus 290 --~~~~~~~D~~~~~---~~~~fD~iLlDaPCSg~Gt~rr~P--d~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445) T Consensus 104 ~~~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~--~~~~~~~~~e~~Fiqh~l~~Lk~~Graa 181 (312) T pfam02384 104 YNDFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRA--YGVPPKSNADFAFLQHIIYHLSPNGRAA 181 (312) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHC--CCCCCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 87455214776557676654551189837864667665432102721103--6878887442999999998569997699 Q ss_pred EEE--CCCCHHHCHHHHHHHHHHC Q ss_conf 977--4788343999899999968 Q gi|254780666|r 363 FSN--CSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 363 YsT--CSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 182 iVlp~g~Lf~~~~e~~iR~~lle~ 205 (312) T pfam02384 182 VVLPNGVLFRGGAEGDIRKALVEK 205 (312) T ss_pred EEECCCCCCCCCHHHHHHHHHHHC T ss_conf 995582310465088999999975 |
Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=67.98 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=101.7 Q ss_pred ECCCCCCCCC--CCCCCCCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC Q ss_conf 3463212322--23563213310035564470000102568-41000105967987765443204887417720774457 Q gi|254780666|r 225 VQDASASIPV--QLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 (445) Q Consensus 225 VQD~aSql~~--~~l~~~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~ 301 (445) T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~ 105 (198) T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF 105 (198) T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCHHHC T ss_conf 848999999999873884788888827884788999986297179999369899999998888608-8469998210114 Q ss_pred CCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH Q ss_conf 74344766896167421100110110333288667788999999999999986089828999774788343999899999 Q gi|254780666|r 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445) Q Consensus 302 ~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445) T Consensus 106 --~~~~dtvimNPP---FG~~~rhaDr~F-----------------l~~Ale~s----~vVY---siH~a~~~~f~~~~~ 156 (198) T COG2263 106 --RGKFDTVIMNPP---FGSQRRHADRPF-----------------LLKALEIS----DVVY---SIHKAGSRDFVEKFA 156 (198) T ss_pred --CCCCCEEEECCC---CCCCCCCCCHHH-----------------HHHHHHHH----HEEE---EEECCCCHHHHHHHH T ss_conf --776666997899---732213688899-----------------99999740----1478---740166079999998 Q ss_pred HHCCCCEE Q ss_conf 96887417 Q gi|254780666|r 382 RSSPIPVE 389 (445) Q Consensus 382 ~~~~~~~~ 389 (445) T Consensus 157 ~~~G~~v~ 164 (198) T COG2263 157 ADLGGTVT 164 (198) T ss_pred HHCCCEEE T ss_conf 85497089 |
|
| >KOG1540 consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.5e-06 Score=64.16 Aligned_cols=129 Identities=26% Similarity=0.285 Sum_probs=99.2 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECC---C-----CCCHHHHHCCHHHHHHHHHHHHCCCCCC---EEEEECCCCCCCC Q ss_conf 235632133100355644700001025---6-----8410001059679877654432048874---1772077445774 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---S-----GAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP 303 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~---~-----~~~i~A~D~~~~Rl~~l~~~~~R~g~~~---~~~~~~D~~~~~~ 303 (445) T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF 173 (296) T KOG1540 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF 173 (296) T ss_pred HCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC T ss_conf 21587778758983477525677798761134577776179993898999999877751597768716999477010899 Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH Q ss_conf -3447668961674211001101103332886677889999999999999860898289997747883439998999999 Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 174 dd~s~D~yTi------afGIRN---------------~th~~-k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~ 228 (296) T KOG1540 174 DDDSFDAYTI------AFGIRN---------------VTHIQ-KALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYD 228 (296) T ss_pred CCCCCEEEEE------ECCEEC---------------CCCHH-HHHHHHHHHCCCCCEEE---EEECCCCCCHHHHHHHH T ss_conf 9775115888------421114---------------78778-99999987527786799---99735454077899997 Q ss_pred HCCCCE Q ss_conf 688741 Q gi|254780666|r 383 SSPIPV 388 (445) Q Consensus 383 ~~~~~~ 388 (445) T Consensus 229 ~ysf~V 234 (296) T KOG1540 229 QYSFDV 234 (296) T ss_pred HHHHHH T ss_conf 122232 |
|
| >PRK11036 putative metallothionein SmtA; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-06 Score=65.61 Aligned_cols=129 Identities=21% Similarity=0.315 Sum_probs=94.4 Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCC- Q ss_conf 4632123222356321331003556447000010256841000105967987765443204887-41772077445774- Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP- 303 (445) Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~~~- 303 (445) T Consensus 32 ~dl~~~l~-~-l~-~~plrVLDvG~G~G~~a~~lA~~Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~ 108 (256) T PRK11036 32 QDLDRLLA-E-LG-PRPLRVLDAGGGEGQTAIKMAELGHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (256) T ss_pred HHHHHHHH-H-CC-CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH T ss_conf 99999998-4-69-999839983798779899999779979986699999999999988649661279885689988542 Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH Q ss_conf -3447668961674211001101103332886677889999999999999860898289997747883439998999999 Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 109 ~~~~fDlVlcHaV------------LE~v~dP----------~~~l~~l~~~lkPGG~l--SLmfyN--~~alv~~n~l~ 162 (256) T PRK11036 109 LETPVDLILFHAV------------LEWVADP----------KSVLQTLWSVLRPGGAL--SLMFYN--ANGLLMHNMVA 162 (256) T ss_pred CCCCCCEEEEEHH------------HHHCCCH----------HHHHHHHHHHHCCCCEE--EEEECC--HHHHHHHHHHH T ss_conf 3688667865136------------7723789----------99999999975899379--998428--51699999982 Q ss_pred H Q ss_conf 6 Q gi|254780666|r 383 S 383 (445) Q Consensus 383 ~ 383 (445) T Consensus 163 G 163 (256) T PRK11036 163 G 163 (256) T ss_pred C T ss_conf 5 |
|
| >TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=61.43 Aligned_cols=122 Identities=26% Similarity=0.306 Sum_probs=86.1 Q ss_pred CCCCCCEECCCCCCCCCE---EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------C--C Q ss_conf 321331003556447000---0102568410001059679877654432048874177207744577---------4--3 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------P--K 304 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT---~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~---------~--~ 304 (445) T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~---------~k~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192) T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP---------MKGFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192) T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC---------CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 10788678657898738778877606853389985455---------788564661475447678789999998578987 Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 4476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 101 kk~DVV~SDaaP~~SG~~~i-----------Dh~Rs~dLv~~aL~ia~~vL~~~GnfvvK--vFqGe~~d~y~~e-~r~ 165 (192) T TIGR00438 101 KKVDVVMSDAAPNISGIWDI-----------DHLRSIDLVELALDIAKEVLKPKGNFVVK--VFQGEEIDEYLNE-LRK 165 (192) T ss_pred CEEEEEEECCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHCCCCEEEE--EEECCCHHHHHHH-HHH T ss_conf 43778985268887898754-----------34437999999999999986158989999--8537428899997-652 |
1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing. |
| >KOG2904 consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-05 Score=60.05 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=101.1 Q ss_pred CCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEEC----CCCCCC--CCCCCCEEE Q ss_conf 133100355644700001025--68410001059679877654432048874-177207----744577--434476689 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEM----DAFDYC--PKKLFDAVL 311 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~----D~~~~~--~~~~fD~iL 311 (445) T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328) T KOG2904 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328) T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEE T ss_conf 66668870578318899998347873489985328899999988998741584689841222012565545457524885 Q ss_pred ECCCCCCCCHHHC-CCHHHHCCCHHHH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 6167421100110-1103332886677---889999999999999860898289997747883439998999999688 Q gi|254780666|r 312 VDAPCSSTGTIRR-HPDVLWTRDTDDI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 312 lDaPCSg~Gt~rr-~Pd~~w~~~~~~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m~s~~ 303 (328) T KOG2904 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVRIWMISLK 303 (328) T ss_pred CCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCHHHHHHHHHCH T ss_conf 3899655551223271330237445430666326999999876675456688588973355--668199999987132 |
|
| >pfam01728 FtsJ FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=57.79 Aligned_cols=119 Identities=25% Similarity=0.263 Sum_probs=73.2 Q ss_pred CCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------CCCCCE Q ss_conf 21331003556447000010256--84100010596798776544320488741772077445774--------344766 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDA 309 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--------~~~fD~ 309 (445) T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~---------~--~~~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176) T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM---------K--PIQGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC---------C--CCCCCEEECCCCCCHHHHHHHHHHCCCCCCE T ss_conf 7999999968999769999998566873999973446---------5--6778456516766878999999973998468 Q ss_pred EEECC--CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 89616--7421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 310 VLVDA--PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 310 iLlDa--PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 89 V~sD~a~~~~g~----~------~~d~~~s~~L~---~~~l~~a~~~L~~gG~fv~K~f~~~~-~~~~l~~-~l~~~ 150 (176) T pfam01728 89 VLCDGAPNVSGL----E------NTDSFISLRLV---LAALLLALEVLRPGGNFVVKLFKGFE-FSVELLY-KLKKG 150 (176) T ss_pred EEECCCCCCCCC----C------CHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHH-HHHHC T ss_conf 973366565677----3------34789999999---99999999982437639999982787-6499999-99831 |
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=62.17 Aligned_cols=130 Identities=16% Similarity=0.264 Sum_probs=97.3 Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCCE Q ss_conf 3222356321331003556447000010256-841000105967987765443204887-41772077445774344766 Q gi|254780666|r 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDA 309 (445) Q Consensus 232 l~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~~~~~~fD~ 309 (445) T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~--fDr 140 (283) T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP--FDR 140 (283) T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC--CCE T ss_conf 999756999999898747884499999999849979996689999999999999759976607996562103243--420 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 896167421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 141 Iv------SvgmfEh-------vg~~~~-------~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~y 194 (283) T COG2230 141 IV------SVGMFEH-------VGKENY-------DDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKY 194 (283) T ss_pred EE------EHHHHHH-------HCCCCH-------HHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCHHHHHHH T ss_conf 55------6006887-------371028-------999999996459996599999667885544-332789985 |
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=59.74 Aligned_cols=120 Identities=26% Similarity=0.305 Sum_probs=84.2 Q ss_pred CCCCCEECCCCCCCCCEE---EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------CCCC Q ss_conf 213310035564470000---1025684100010596798776544320488741772077445774---------3447 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------KKLF 307 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~---~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---------~~~f 307 (445) T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205) T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205) T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC-----------CCCCEEEEEECCCCCHHHHHHHHCCCCCC T ss_conf 5898799838799849999999738888489997754556-----------78946884132484379999987077876 Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 66896167421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 113 DvV~sD~ap~~~g~~~~-----------Dh~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~ 175 (205) T COG0293 113 DVVLSDMAPNTSGNRSV-----------DHARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRL 175 (205) T ss_pred CEEEECCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHHEECCCCEEE---EEEEECCCHHHHHHHHHHH T ss_conf 66872588776787220-----------088999999999999987257898399---9997579879999999986 |
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=58.12 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=95.3 Q ss_pred CCCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC Q ss_conf 32123222356--32133100355644700001025684-10001059679877654432048874-1772077445774 Q gi|254780666|r 228 ASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303 (445) Q Consensus 228 ~aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~ 303 (445) T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300) T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCC T ss_conf 01799999999860589879982678159999999819866899718889999999999976996022003456300013 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 227 ~~~~DvIVA-----------------------NI--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~ 278 (300) T COG2264 227 NGPFDVIVA-----------------------NI--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQ 278 (300) T ss_pred CCCCCEEEE-----------------------HH--HHHHHHHHHHHHHHHCCCCCEEEEEE--ECHHH-HHHHHHHHHH T ss_conf 686568986-----------------------05--27899999999998708893699986--20758-9999999985 Q ss_pred CC Q ss_conf 88 Q gi|254780666|r 384 SP 385 (445) Q Consensus 384 ~~ 385 (445) T Consensus 279 ~g 280 (300) T COG2264 279 AG 280 (300) T ss_pred CC T ss_conf 89 |
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities | Back alignment and domain information |
|---|
Probab=97.90 E-value=5e-06 Score=64.47 Aligned_cols=121 Identities=25% Similarity=0.260 Sum_probs=93.5 Q ss_pred CCCCCEECCCCCCCCCEEEECCC-----------CCCHHHHHCCHHHHHHHHHHHHCCC----CCCEEEEECCCCCCCC- Q ss_conf 21331003556447000010256-----------8410001059679877654432048----8741772077445774- Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVS-----------GAKVTALDVSKRRLEKLRCNLDRLH----LYAEDIIEMDAFDYCP- 303 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~-----------~~~i~A~D~~~~Rl~~l~~~~~R~g----~~~~~~~~~D~~~~~~- 303 (445) T Consensus 42 k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~ 121 (242) T TIGR01934 42 KKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFE 121 (242) T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCC T ss_conf 88897788723839999999863575553357763378987079889999987413420033321642110005508799 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 122 D~sFD~~Ti----------------aF-----GlRN~~d~~-~aL~E~~RVLKpgG~l--~iLEf~~P~~~~~~~~~Y~~ 177 (242) T TIGR01934 122 DNSFDAVTI----------------AF-----GLRNVTDIQ-KALREMYRVLKPGGRL--VILEFSKPANGAFLKKFYKF 177 (242) T ss_pred CCCEEEEEE----------------EC-----CCCCCCCHH-HHHHHHHHCCCCCCEE--EEECCCCCCCHHHHHHHHHH T ss_conf 862444664----------------02-----554746867-8987731101889879--98407867641688999998 Q ss_pred C Q ss_conf 8 Q gi|254780666|r 384 S 384 (445) Q Consensus 384 ~ 384 (445) T Consensus 178 Y 178 (242) T TIGR01934 178 Y 178 (242) T ss_pred H T ss_conf 8 |
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=54.73 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=88.4 Q ss_pred CCCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCC Q ss_conf 32123222356--32133100355644700001025684-100010596798776544320488741-772077445774 Q gi|254780666|r 228 ASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCP 303 (445) Q Consensus 228 ~aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~~~~~ 303 (445) T Consensus 147 ~TT~lcl~~l~~~~~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~~--~~ 224 (298) T PRK00517 147 PTTRLCLEWLEKLVLPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPEDQ--PL 224 (298) T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CC T ss_conf 4799999999843546886887157706999999974998499998989999999999998699842689616643--44 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 225 ~~~~DlvvAN-------------------------Ila~vl~~l~~~~~~~l~~~G~lilS--GIl~~~~~~v~~~~-~~ 276 (298) T PRK00517 225 EGKADVIVAN-------------------------ILANPLIELAPDLAALVKPGGRLILS--GILAEQADEVLEAY-ED 276 (298) T ss_pred CCCCCEEEEE-------------------------CCHHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHH-HH T ss_conf 6764689973-------------------------15899999999999973899799992--78488999999999-98 Q ss_pred CC Q ss_conf 88 Q gi|254780666|r 384 SP 385 (445) Q Consensus 384 ~~ 385 (445) T Consensus 277 ~g 278 (298) T PRK00517 277 AG 278 (298) T ss_pred CC T ss_conf 79 |
|
| >pfam01269 Fibrillarin Fibrillarin | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00084 Score=47.96 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=86.6 Q ss_pred CCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCE Q ss_conf 56321331003556447000010---25684100010596798776544320488741772077445774----344766 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDA 309 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~ 309 (445) T Consensus 69 ~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R--~NIvPIl~DAr~P~~Y~~lv~~VD~ 146 (229) T pfam01269 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKR--PNIVPILEDARHPQKYRMLVEMVDV 146 (229) T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHCCCCCE T ss_conf 68589987999447779857678872288953999971735578999997427--9944576677875676542556668 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE---C---CCCHHHCHHHHHHHHH Q ss_conf 8961674211001101103332886677889999999999999-8608982899977---4---7883439998999999 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI-SFVKPGGIVVFSN---C---SLDKQDSEEVVQKVLR 382 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~-~~lk~gG~lvYsT---C---Si~~eEne~vV~~fL~ 382 (445) T Consensus 147 ifqDva---------Q~----------------~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~e~~~L~ 201 (229) T pfam01269 147 IFADVA---------QP----------------DQARILALNAKYFLKNGGYFMISIKARSIDVTKEPEEVFAREVEKLK 201 (229) T ss_pred EEECCC---------CH----------------HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 996278---------77----------------78999999999861269889999971342167898999999999998 Q ss_pred HC Q ss_conf 68 Q gi|254780666|r 383 SS 384 (445) Q Consensus 383 ~~ 384 (445) T Consensus 202 ~~ 203 (229) T pfam01269 202 EE 203 (229) T ss_pred HC T ss_conf 76 |
|
| >KOG2187 consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.1e-05 Score=55.48 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=85.3 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---C---CC Q ss_conf 22356321331003556447000010256841000105967987765443204887417720774457743---4---47 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---K---LF 307 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~---~f 307 (445) T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534) T KOG2187 376 GEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSE 455 (534) T ss_pred HHHHCCCCCCEEEEEEECCCCEEHHHHCCCCCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCHHHCCCHHCCCCCCCC T ss_conf 99708998847998630688400001026661210233845444355400115865402430642001501205678887 Q ss_pred C-EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH Q ss_conf 6-689616742110011011033328866778899999999999998608982899977478834399989 Q gi|254780666|r 308 D-AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445) Q Consensus 308 D-~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445) T Consensus 456 ~~v~iiDPpR~Gl------------------h~~-------~ik~l~~~~~~~rlvyvSCn~~t~-ar~v~ 500 (534) T KOG2187 456 TLVAIIDPPRKGL------------------HMK-------VIKALRAYKNPRRLVYVSCNPHTA-ARNVI 500 (534) T ss_pred CEEEEECCCCCCC------------------CHH-------HHHHHHHCCCCCCEEEEECCHHHH-HHHHH T ss_conf 5689978886761------------------099-------999998534755058997166775-30378 |
|
| >pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=54.09 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=85.3 Q ss_pred CCCCCCCCCC--CCCCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC Q ss_conf 2123222356--3213310035564470000102568-410001059679877654432048874177207744577434 Q gi|254780666|r 229 SASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 (445) Q Consensus 229 aSql~~~~l~--~~~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~ 305 (445) T Consensus 146 TT~lcl~~l~~~~~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~-~~~~~~~-~~~~ 223 (294) T pfam06325 146 TTALCLEALESLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQL-EVYLPGD-LPEG 223 (294) T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCE-EEECCCC-CCCC T ss_conf 7999999998650369867850565089999999759996899988899999999999976998317-9964431-5566 Q ss_pred CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 224 ~~DlIvA-------------------------NIla~~L~~l~~~~~~~l~~~G~lilS--Gil~~q~~~v~-~a~~~ 273 (294) T pfam06325 224 KADVVVA-------------------------NILADPLIELAPDIYALVKPGGYLILS--GILEEQADDVA-EAYSQ 273 (294) T ss_pred CCCEEEE-------------------------HHCHHHHHHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHH-HHHHC T ss_conf 4578984-------------------------108999999999999973899899991--78289999999-99986 |
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=53.86 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=97.6 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEE Q ss_conf 23563213310035564470000102---5684100010596798776544320488741772077445774-3447668 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~i 310 (445) T Consensus 39 ~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~~~~~fdyv 118 (231) T TIGR02752 39 KRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPYDDNSFDYV 118 (231) T ss_pred HHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCCEE T ss_conf 77656404121121037337888988861777716740035889999998887543200222305200178776661257 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399989999 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445) T Consensus 119 tiGfG------lrnvPdy----------------~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~~ 166 (231) T TIGR02752 119 TIGFG------LRNVPDY----------------MTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYFF 166 (231) T ss_pred EECCC------CCCHHHH----------------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH T ss_conf 75255------1230269----------------999999888627997179862577625799999999 |
Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.. |
| >TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase ( |
|---|
Probab=97.58 E-value=4.5e-05 Score=57.39 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=90.8 Q ss_pred CCCC--CCCCCCEECCCCCCCCCEE---EECCCCCCHHHHHCCHHHHHHHHHHHHC-----CCCCCEEEEECCCCC-CCC Q ss_conf 2356--3213310035564470000---1025684100010596798776544320-----488741772077445-774 Q gi|254780666|r 235 QLFG--TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR-----LHLYAEDIIEMDAFD-YCP 303 (445) Q Consensus 235 ~~l~--~~~g~~VLD~CAAPGGKT~---~l~~~~~~i~A~D~~~~Rl~~l~~~~~R-----~g~~~~~~~~~D~~~-~~~ 303 (445) T Consensus 74 ~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~ 153 (228) T TIGR00080 74 EYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEE 153 (228) T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH T ss_conf 98885214035566504785589999999871397189985357889999987654314440688658997788657102 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 154 ~APYd~I~~~AA------------------~k~iP~A----------L~~QL~eGG~L~~Pv---~~~d~~Q~l~~~~k~ 202 (228) T TIGR00080 154 KAPYDAILVTAA------------------AKEIPKA----------LIDQLEEGGILVLPV---GEVDEEQVLKRVEKR 202 (228) T ss_pred CCCCCEEEEECC------------------CCCCCHH----------HHHHHHHCCEEEECC---EEECCCEEEEEEEEE T ss_conf 488352775237------------------8987657----------899997289886200---000675379999870 Q ss_pred C Q ss_conf 8 Q gi|254780666|r 384 S 384 (445) Q Consensus 384 ~ 384 (445) T Consensus 203 n 203 (228) T TIGR00080 203 N 203 (228) T ss_pred C T ss_conf 8 |
1.1.77" />) (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=3.7e-05 Score=57.97 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=84.0 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCC---CCCCCCC Q ss_conf 235632133100355644700001025684-100010596798776544320488--7417720774457---7434476 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDY---CPKKLFD 308 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~~~~---~~~~~fD 308 (445) T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287) T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287) T ss_pred HEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCC T ss_conf 24443668784432467138999998758748999960877277413588984202003178616599997418865301 Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHCHHHHHHH Q ss_conf 689616742110011011033328866778899999999999998608982899-977478834399989999 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKV 380 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCSi~~eEne~vV~~f 380 (445) T Consensus 208 aIiHDPP-------------RfS~Ag-eLY-----seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287) T COG2521 208 AIIHDPP-------------RFSLAG-ELY-----SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287) T ss_pred EEEECCC-------------CCCHHH-HHH-----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHH T ss_conf 6860797-------------331023-576-----89999999997076980799727987402467714789 |
|
| >TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable) | Back alignment and domain information |
|---|
Probab=97.53 E-value=4.9e-05 Score=57.06 Aligned_cols=136 Identities=24% Similarity=0.295 Sum_probs=94.6 Q ss_pred CCEECCCCCCCCCCCCCC-----CCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHH----CCCCCC Q ss_conf 101346321232223563-----2133100355644700001025--68410001059679877654432----048874 Q gi|254780666|r 222 VWWVQDASASIPVQLFGT-----LNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLD----RLHLYA 290 (445) Q Consensus 222 ~~~VQD~aSql~~~~l~~-----~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~----R~g~~~ 290 (445) T Consensus 12 ~A~~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~ 91 (272) T TIGR02072 12 HAKIQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKNLKA 91 (272) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHH T ss_conf 67999999999999887407654455435651268548999999868800123333256789999974467886576045 Q ss_pred EEEEECCCCCCCC-CCC--CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 1772077445774-344--7668961674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 291 EDIIEMDAFDYCP-KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 291 ~~~~~~D~~~~~~-~~~--fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 92 ~~f~~gD~E~l~~~~~~~~~DLI~Sn------------~a~QW~~~~----------~~~l~~l~~~lk~gG~l~FStf- 148 (272) T TIGR02072 92 VQFICGDIEKLPLEDSSFKFDLIVSN------------LALQWCDDL----------SQALSELARVLKPGGLLAFSTF- 148 (272) T ss_pred HHHHHHHHHHCCCCCCCCEEEHHHHH------------HHHHHCCCH----------HHHHHHHHHHCCCCCEEEEEEC- T ss_conf 66666377717887663034127563------------588710478----------8999999975287968998613- Q ss_pred CCHHHCHHHHHHHHH Q ss_conf 883439998999999 Q gi|254780666|r 368 LDKQDSEEVVQKVLR 382 (445) Q Consensus 368 i~~eEne~vV~~fL~ 382 (445) T Consensus 149 --~~~~l~El~~~~~ 161 (272) T TIGR02072 149 --GPGTLKELRQSFG 161 (272) T ss_pred --CCHHHHHHHHHHH T ss_conf --5413499999999 |
The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process. |
| >PRK00107 gidB glucose-inhibited division protein B; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=47.10 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=87.5 Q ss_pred CCCCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCC Q ss_conf 213310035564470000--102568410001059679877654432048874177207744577434476689616742 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445) T Consensus 68 ~~~~~vlDiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~itsRA--- 144 (216) T PRK00107 68 EKPIRVLDVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA--- 144 (216) T ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEEEH--- T ss_conf 65877997079999426789997787729997387699999999999769998799863544046567866898605--- Q ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 11001101103332886677889999999999999860898289997747883439998999999688 Q gi|254780666|r 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 318 g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 145 ----------------va~l~-------~l~~~~~~~l~~~g~~i~~KG~-~~~~Ei~~a~~~~~~~~ 188 (216) T PRK00107 145 ----------------VASLS-------DLVELCLPLLKPGGRFLALKGQ-DPEEEIAELPKAIKKLG 188 (216) T ss_pred ----------------HHCHH-------HHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHHHHCC T ss_conf ----------------40699-------9999999754889799998799-95999999898999839 |
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00017 Score=53.17 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=89.8 Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCE Q ss_conf 23222356321331003556447000010256-84100010596798776544320488741772077445774344766 Q gi|254780666|r 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 (445) Q Consensus 231 ql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~ 309 (445) T Consensus 157 ~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g~~VtgiTlS~eQ~~~a~~r~~--gl~-v~v~l~DYRd~--~g~fD~ 231 (383) T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLP-VEIRLQDYRDL--NGQFDR 231 (383) T ss_pred HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC--CCC-CEEEECCHHHC--CCCCCE T ss_conf 9999864899999798857874999999999749759998588999999999973--898-78997152443--677355 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 896167421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 232 Iv------SIeM~Eh-------VG~-------~~~~~yF~~i~~lLkp~G~~~lqtI~~~--~~~~~~d~fI~kY 284 (383) T PRK11705 232 IV------SVGMFEH-------VGP-------KNYRTYFEVVDRCLKPDGLFLLHTIGSN--KTDTNVDPWINKY 284 (383) T ss_pred EE------EEEHHHH-------CCH-------HHHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCCCHHHHHH T ss_conf 99------9714865-------287-------7799999999985699973999993366--7777655128884 |
|
| >KOG2915 consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00021 Score=52.41 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=88.2 Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCC---C Q ss_conf 32223563213310035564470000102---5684100010596798776544320488-741772077445774---3 Q gi|254780666|r 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP---K 304 (445) Q Consensus 232 l~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~---~ 304 (445) T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314) T KOG2915 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314) T ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC T ss_conf 99998657999789863788634889999863767626999832878999999999737786348999641567735313 Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHH Q ss_conf 44766896167421100110110333288667788999999999999986089828999774788343999899999 Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 (445) Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL 381 (445) T Consensus 176 ~~aDaVFLDlP------------aPw~---------------AiPha~~~lk~~g~---r~csFSPC--IEQvqrtc 220 (314) T KOG2915 176 LKADAVFLDLP------------APWE---------------AIPHAAKILKDEGG---RLCSFSPC--IEQVQRTC 220 (314) T ss_pred CCCCEEEECCC------------CHHH---------------HHHHHHHHHHHCCC---EEEECCHH--HHHHHHHH T ss_conf 42356997589------------8055---------------22336777540682---59962178--99999999 |
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=8.7e-05 Score=55.24 Aligned_cols=122 Identities=16% Similarity=0.309 Sum_probs=96.8 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC------------ Q ss_conf 22356321331003556447000010256841000105967987765443204887417720774457------------ Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY------------ 301 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~------------ 301 (445) T Consensus 196 ~~~~~~~~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~R 275 (361) T TIGR02143 196 LEVTQNSKGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRR 275 (361) T ss_pred HHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCC T ss_conf 99835888872010002675310445653334554302402479999998717988310102327999998603776546 Q ss_pred -CC------CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH Q ss_conf -74------34476689616742110011011033328866778899999999999998608982899977478834399 Q gi|254780666|r 302 -CP------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445) Q Consensus 302 -~~------~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445) T Consensus 276 L~d~gIdL~~Y~f~tiFVDPPRaGl-------------D~---------------~t~~Lv~~y~rIlYISC--NP~TL~ 325 (361) T TIGR02143 276 LKDGGIDLKSYNFNTIFVDPPRAGL-------------DP---------------DTVKLVQKYERILYISC--NPETLK 325 (361) T ss_pred CCCCCCCCCCCCCCEEEECCCCCCC-------------CH---------------HHHHHHHHCCCEEEEEC--CHHHHH T ss_conf 5668863342025602677988888-------------98---------------99999962598799846--968999 Q ss_pred HHHHHHHHHCC Q ss_conf 98999999688 Q gi|254780666|r 375 EVVQKVLRSSP 385 (445) Q Consensus 375 ~vV~~fL~~~~ 385 (445) T Consensus 326 ~NL~~L~~TH~ 336 (361) T TIGR02143 326 ENLEQLSETHR 336 (361) T ss_pred HHHHHHHHCCE T ss_conf 99998860653 |
All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing. |
| >KOG2671 consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00073 Score=48.39 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=98.3 Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHH-------HHHHHHHCCCCCC--EEEEECCCCC Q ss_conf 123222356321331003556447000010256841000105967987-------7654432048874--1772077445 Q gi|254780666|r 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE-------KLRCNLDRLHLYA--EDIIEMDAFD 300 (445) Q Consensus 230 Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~-------~l~~~~~R~g~~~--~~~~~~D~~~ 300 (445) T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421) T KOG2671 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421) T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCEEEEHHHHCCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEECCCC T ss_conf 88875553067998874476566742666223063564124531201134577742667687747753203204510567 Q ss_pred CC--CCCCCCEEEECCCCC---CCCHHHCCCHHHHCCCHH----------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 77--434476689616742---110011011033328866----------778899999999999998608982899977 Q gi|254780666|r 301 YC--PKKLFDAVLVDAPCS---STGTIRRHPDVLWTRDTD----------DIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 301 ~~--~~~~fD~iLlDaPCS---g~Gt~rr~Pd~~w~~~~~----------~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 277 ~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~--r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421) T KOG2671 277 PPLRSNLKFDAIVCDPPYGVREGARKTGKKKSV--RTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421) T ss_pred CCHHHCCEEEEEEECCCCCHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 630103233378727981145666654145765--575212433557764466799997508876376630285589834 Q ss_pred CCCCHHHCHHHHHHHHHHCC Q ss_conf 47883439998999999688 Q gi|254780666|r 366 CSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 366 CSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 355 ----p~~~e~~~~~~~P~h~ 370 (421) T KOG2671 355 ----PTITEEYGEDDIPSHP 370 (421) T ss_pred ----CCHHHCCCCCCCCCCC T ss_conf ----7412125743477773 |
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00075 Score=48.30 Aligned_cols=129 Identities=16% Similarity=0.304 Sum_probs=84.0 Q ss_pred CCCCCCCCCEECCCCCCCCCEEE-EC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCC Q ss_conf 35632133100355644700001-02---5684100010596798776544320488741772077445774---34476 Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQ-LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFD 308 (445) Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~-l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD 308 (445) T Consensus 415 Ildyi~G~~ivdi--G~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~-ksW~V~~gDAL~l~d~f~~eSvd 491 (679) T PRK06922 415 ILDYIKGDTIVDV--GAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVD 491 (679) T ss_pred EEECCCCCEEEEE--CCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCC-CCCEEECCCCCCCHHHCCCCCCC T ss_conf 4200147679986--69962148766765899861466660889999988777548-98423214303615434756664 Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH Q ss_conf 6896167421100110110333288667788999999999999986089828999774788343999899 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445) T Consensus 492 Tiv----~sSI-----lHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRDGImT--E~kd~~r 550 (679) T PRK06922 492 TIV----YSSI-----LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT--EDKRLMR 550 (679) T ss_pred EEE----EHHH-----HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHHHHH T ss_conf 687----4277-----888886345667134799999999999987288864999457536--8887787 |
|
| >pfam02390 Methyltransf_4 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00044 Score=50.02 Aligned_cols=126 Identities=15% Similarity=0.256 Sum_probs=90.5 Q ss_pred CCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCC----CCCCCCCEEEEC Q ss_conf 1331003556447000010256--841000105967987765443204-887417720774457----743447668961 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDAFDY----CPKKLFDAVLVD 313 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~~~~~~~D~~~~----~~~~~fD~iLlD 313 (445) T Consensus 20 ~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i~ 99 (199) T pfam02390 20 EQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFIN 99 (199) T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEE T ss_conf 99449997368889999999978998789999505999999999998457773787604799999975798864279996 Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH Q ss_conf 674211001101103332886677889999999999999860898289997747883439998999999 Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 100 FP---------DP---WpKkrH~KR--Rli~~~fl~~~~~~Lk~gG~l~~~TD~~~y~--~~~~e~~~~ 152 (199) T pfam02390 100 FP---------DP---WPKKRHHKR--RLLQPEFLKEYARVLKPGGVLHLATDVEEYF--EWMLEHLSE 152 (199) T ss_pred CC---------CC---CCCCCCCCC--CCCCHHHHHHHHHHCCCCCEEEEEECCHHHH--HHHHHHHHH T ss_conf 79---------99---876442440--0079999999999638898999982899999--999999996 |
This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00045 Score=49.98 Aligned_cols=130 Identities=17% Similarity=0.244 Sum_probs=97.0 Q ss_pred CCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCCCCEEEECC Q ss_conf 1331003556447000010256--841000105967987765443204887417720774457----7434476689616 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----CPKKLFDAVLVDA 314 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----~~~~~fD~iLlDa 314 (445) T Consensus 54 ~~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i~F 133 (229) T PRK00121 54 DAPIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYLNF 133 (229) T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEECC T ss_conf 99439996158969999999868888689999616999999999998299838988347899999714645414046717 Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCC Q ss_conf 7421100110110333288667788999999999999986089828999774788343999899999968874 Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 (445) Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~ 387 (445) T Consensus 134 P-----------D-PWpKkrH~--KRRli~~~fl~~~~~~Lk~~G~i~~~TD~~~Y~---~~~~e~~~~~~~f 189 (229) T PRK00121 134 P-----------D-PWPKKRHH--KRRLVQPEFLELYARVLKPGGEFHFATDWEEYA---EYMLEVFGAHPGF 189 (229) T ss_pred C-----------C-CCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHHHHHCCCC T ss_conf 9-----------9-99763202--401289999999998579998899981879999---9999999868693 |
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0031 Score=43.77 Aligned_cols=117 Identities=26% Similarity=0.240 Sum_probs=86.1 Q ss_pred CCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCE Q ss_conf 563213310035564470000102---5684100010596798776544320488741772077445774----344766 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDA 309 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~ 309 (445) T Consensus 131 i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R--~NIvPIleDAr~P~kYr~lV~~VDv 208 (296) T PTZ00146 131 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR--TNIVPIIEDARYPQKYRMLVPMVDC 208 (296) T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHCCCCCE T ss_conf 44379998998514679865566650178861999970646688999997227--9833577778974675542455558 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHH-HHHHHHCCCCCEEEEE---ECCCCHHHCHHHHHHH Q ss_conf 896167421100110110333288667788999999999-9999860898289997---7478834399989999 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL-LQGISFVKPGGIVVFS---NCSLDKQDSEEVVQKV 380 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL-~~a~~~lk~gG~lvYs---TCSi~~eEne~vV~~f 380 (445) T Consensus 209 If~DVA---------Qp----------------dQarI~~~Na~~FLK~gG~~~i~IKArsIDst~~p~~VF~~E 258 (296) T PTZ00146 209 IFADVA---------QP----------------DQARIVALNAQHFLKNGGHFVISIKANCIDSTADPEVVFASE 258 (296) T ss_pred EEECCC---------CH----------------HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH T ss_conf 996178---------76----------------589999999998531698899999726632567989999999 |
|
| >pfam02527 GidB rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=43.84 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=86.8 Q ss_pred CCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 3310035564470000--10256841000105967987765443204887417720774457743447668961674211 Q gi|254780666|r 242 NLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445) Q Consensus 242 g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445) T Consensus 49 ~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~~~~~D~v~aR------ 122 (184) T pfam02527 49 RIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDVITSR------ 122 (184) T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEEC------ T ss_conf 98688347988846799999677855999928289999999999985999769995604414644678789981------ Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 00110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 123 -------------A~a~l~-------~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a-~~~~~~l 166 (184) T pfam02527 123 -------------AVASLN-------ELTEWALPLLKPGGYFLAYKGKQAEDEIEEL-DKACQKL 166 (184) T ss_pred -------------HHCCHH-------HHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHHHH T ss_conf -------------005799-------9999999863889899998899989999987-8779982 |
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. |
| >TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0019 Score=45.38 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=105.4 Q ss_pred CCCCCCCCCCCCCC-EECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 23222356321331-00355644700001025684-10001059679877654432048874177207744577434476 Q gi|254780666|r 231 SIPVQLFGTLNNLS-VLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 (445) Q Consensus 231 ql~~~~l~~~~g~~-VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD 308 (445) T Consensus 10 ~LL~~nL~~~k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~-~~l~v~~~Dlf~~v~geKFd 88 (183) T TIGR00537 10 LLLEANLRELKPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNN-VELDVLETDLFEGVRGEKFD 88 (183) T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCC-CCEEEEECCCCCCCCCCCEE T ss_conf 99999867516995289971680489999851588207886368799998773100026-64047611135785555102 Q ss_pred EEEECCCCC---CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 689616742---11001101103332886677889999999999999860898289997747883439998999999688 Q gi|254780666|r 309 AVLVDAPCS---STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 309 ~iLlDaPCS---g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 89 viLFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr----~vidrFldelp~~lk~gGrv~l~~SSl~~e--~~~~~kl-~~~G 161 (183) T TIGR00537 89 VILFNPPYLPLEDDEKRGDYLDLAIDGGKDGR----KVIDRFLDELPEYLKEGGRVQLIQSSLSDE--KDTLDKL-DELG 161 (183) T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHH-HHCC T ss_conf 77307898888765234766443331787305----788888765688870599899996066886--8899887-6158 Q ss_pred CCEEEC Q ss_conf 741781 Q gi|254780666|r 386 IPVELV 391 (445) Q Consensus 386 ~~~~~~ 391 (445) T Consensus 162 F~~ei~ 167 (183) T TIGR00537 162 FKVEIV 167 (183) T ss_pred CCEEEE T ss_conf 847998 |
No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity. |
| >KOG1099 consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0018 Score=45.40 Aligned_cols=112 Identities=29% Similarity=0.396 Sum_probs=71.3 Q ss_pred CCCEECCCCCCCCCEEEE----C---CCCC----CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------- Q ss_conf 331003556447000010----2---5684----10001059679877654432048874177207744577-------- Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQL----I---VSGA----KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l----~---~~~~----~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-------- 302 (445) T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------M--aPI~GV~qlq~DIT~~stae~Ii~h 110 (294) T KOG1099 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------M--APIEGVIQLQGDITSASTAEAIIEH 110 (294) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCC---------C--CCCCCEEEEECCCCCHHHHHHHHHH T ss_conf 3677435308983999999997324887420116279985565---------7--7667627850455777689999998 Q ss_pred -CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH----HCCCCCEEEEEECCCCHHHCHHHH Q ss_conf -434476689616742110011011033328866778899999999999998----608982899977478834399989 Q gi|254780666|r 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVVFSNCSLDKQDSEEVV 377 (445) Q Consensus 303 -~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~----~lk~gG~lvYsTCSi~~eEne~vV 377 (445) T Consensus 111 fggekAdlVvcDGA----------PDvT---GlHd~DEy~--Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslL 172 (294) T KOG1099 111 FGGEKADLVVCDGA----------PDVT---GLHDLDEYV--QAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLL 172 (294) T ss_pred HCCCCCCEEEECCC----------CCCC---CCCCHHHHH--HHHHHHHHHHHHHHEECCCCEEEH---HHHCCCCHHHH T ss_conf 57997667884799----------8744---532088999--999999998777420147875255---46426750789 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780666|r 378 QKVLR 382 (445) Q Consensus 378 ~~fL~ 382 (445) T Consensus 173 ysql~ 177 (294) T KOG1099 173 YSQLR 177 (294) T ss_pred HHHHH T ss_conf 99999 |
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.002 Score=45.11 Aligned_cols=122 Identities=24% Similarity=0.317 Sum_probs=86.1 Q ss_pred CCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCC Q ss_conf 632133100355644700001025--684100010596798776544320488741772077445774344766896167 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445) T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAv 101 (257) T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAV 101 (257) T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC-----CCCCEECCCHHHCCCCCCCCHHHHHHH T ss_conf 866641034557788778899998688886760469999999999748-----997321052754499876330334436 Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCC Q ss_conf 42110011011033328866778899999999999998608982899977478834399989999996887 Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 (445) Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~ 386 (445) T Consensus 102 ------------lqWlpd----------H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~ 150 (257) T COG4106 102 ------------LQWLPD----------HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPF 150 (257) T ss_pred ------------HHHCCC----------CHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCH T ss_conf ------------644364----------0899999998508885699978876476457999998742836 |
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0013 Score=46.59 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=97.6 Q ss_pred CCCCCCCCCCCC--CCCC--CCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCC-- Q ss_conf 632123222356--3213--31003556447000010256-8410001059679877654432048874-17720774-- Q gi|254780666|r 227 DASASIPVQLFG--TLNN--LSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298 (445) Q Consensus 227 D~aSql~~~~l~--~~~g--~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~-- 298 (445) T Consensus 178 H~TT~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vP 257 (330) T TIGR00406 178 HPTTSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVP 257 (330) T ss_pred CHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCC T ss_conf 45789999987401477766547871267178999999751231122137728999999768745886457643205787 Q ss_pred -CCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH Q ss_conf -4577434476689616742110011011033328866778899999999999998608982899977478834399989 Q gi|254780666|r 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445) Q Consensus 299 -~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445) T Consensus 258 e~~~~~e~~~DViVA-------------------------NiLA~vi~~L~p~~~~L~~~~G~lilS--GIl~~-~~~sV 309 (330) T TIGR00406 258 ELEQPIEGKADVIVA-------------------------NILAEVIKELYPQFSRLVKPGGHLILS--GILET-QAQSV 309 (330) T ss_pred CCCCCCCCCCCEEEE-------------------------CCHHHHHHHHHHHHHHHCCCCCCEEEH--HHHHH-HHHHH T ss_conf 534532256675788-------------------------002457876413551310689965741--34764-79999 Q ss_pred HHHHHHCCCCEEECCCC Q ss_conf 99999688741781376 Q gi|254780666|r 378 QKVLRSSPIPVELVPLN 394 (445) Q Consensus 378 ~~fL~~~~~~~~~~~~~ 394 (445) T Consensus 310 ~~ay~q~--GF~~~~~~ 324 (330) T TIGR00406 310 CEAYEQA--GFTVVEIL 324 (330) T ss_pred HHHHHCC--CCEEHHHH T ss_conf 9998557--94634346 |
1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0027 Score=44.15 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=100.3 Q ss_pred HCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEE---CC-C--CCCHHHHHCCHHHHHHHHHHHHCCCCC-CEE Q ss_conf 0010134632123222356321331003556447000010---25-6--841000105967987765443204887-417 Q gi|254780666|r 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV-S--GAKVTALDVSKRRLEKLRCNLDRLHLY-AED 292 (445) Q Consensus 220 eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l---~~-~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~ 292 (445) T Consensus 165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489) T COG0286 165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489) T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCC T ss_conf 78605879999999997577656523473354037999999999751555049989566889999996116627874223 Q ss_pred EEECCCCCCC------CCCCCCEEEECCCCCCCCHHHCCCHH--HHCCCHHHHHHHHHHH-HHHHHHHHHHCCCCC---E Q ss_conf 7207744577------43447668961674211001101103--3328866778899999-999999998608982---8 Q gi|254780666|r 293 IIEMDAFDYC------PKKLFDAVLVDAPCSSTGTIRRHPDV--LWTRDTDDIVKSACFQ-RKLLLQGISFVKPGG---I 360 (445) Q Consensus 293 ~~~~D~~~~~------~~~~fD~iLlDaPCSg~Gt~rr~Pd~--~w~~~~~~l~~l~~~Q-~~iL~~a~~~lk~gG---~ 360 (445) T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aai 324 (489) T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 43344236873323466555016865799554443443310024320002577888952789999999997186770589 Q ss_pred EEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 999774788343999899999968 Q gi|254780666|r 361 VVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 361 lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 325 vl~~gv-lfr~~~e~~IR~~l~~~ 347 (489) T COG0286 325 VLPDGV-LFRGGAEKDIRKDLLED 347 (489) T ss_pred EECCCC-CCCCCCHHHHHHHHHHH T ss_conf 925886-62777225799998750 |
|
| >TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0086 Score=40.43 Aligned_cols=139 Identities=22% Similarity=0.136 Sum_probs=108.6 Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHH-HCCHHHHHHHHHHHHCCCCCC--EEEEECCCCCCC Q ss_conf 46321232223563213310035564470000102568410001-059679877654432048874--177207744577 Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYC 302 (445) Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~-D~~~~Rl~~l~~~~~R~g~~~--~~~~~~D~~~~~ 302 (445) T Consensus 188 ~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (358) T TIGR01177 188 DPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLP 267 (358) T ss_pred CHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCC T ss_conf 54677777654202467510042226660332333321100024403567642521113330554315676403300111 Q ss_pred CC-----CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHH Q ss_conf 43-----4476689616742110011011033328866778899999999999998608982899977478834399989 Q gi|254780666|r 303 PK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 (445) Q Consensus 303 ~~-----~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV 377 (445) T Consensus 268 ~~~~~~~~~~~~~~~d~p~g~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 334 (358) T TIGR01177 268 LRLPGLDESVDAIATDPPYGRS-------------TTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTDLDLESLAEG 334 (358) T ss_pred CCCCCCHHHHHHHHCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH T ss_conf 0035310112222125654531-------------112210368888888888888642687179974033464665411 |
. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0067 Score=41.23 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=96.4 Q ss_pred HCHHHHHCCCEE--CCCC---CCC--CCCCCCCCCCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHH-- Q ss_conf 585011001013--4632---123--22235632133100355644700001025684--100010596798776544-- Q gi|254780666|r 214 SLPGFAEGVWWV--QDAS---ASI--PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCN-- 282 (445) Q Consensus 214 ~~~~f~eG~~~V--QD~a---Sql--~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~-- 282 (445) T Consensus 260 ~~rLyLdG~lQ~s~~DE~~YhE~LvHp~m~~~~~-p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~ 338 (516) T PRK03612 260 DLRLYLNGRLQFSSRDEYRYHEALVHPALAASPR-ARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPA 338 (516) T ss_pred CEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCC T ss_conf 6489988923357864888776340402156999-773899837760879998648996637899518899999985721 Q ss_pred HHCCC---CC--CEEEEECCCCCCC--CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32048---87--4177207744577--43447668961674211001101103332886677889999999999999860 Q gi|254780666|r 283 LDRLH---LY--AEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 (445) Q Consensus 283 ~~R~g---~~--~~~~~~~D~~~~~--~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445) T Consensus 339 l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~yDvIi~D~p---------dP~~~---~~~~L-----Ys~eFY~~~~~~L 401 (516) T PRK03612 339 LRALNGGALDDPRVTVVNDDAFNWLRKLPETFDAIIVDLP---------DPSNP---ALGKL-----YSVEFYRLLKRRL 401 (516) T ss_pred HHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECC---------CCCCC---CCCCC-----CCHHHHHHHHHHC T ss_conf 4444123234996489853789999868887888998189---------97995---22467-----5399999999844 Q ss_pred CCCCEEEE-EECCCCHHHCHHHHHHHHHHC Q ss_conf 89828999-774788343999899999968 Q gi|254780666|r 356 KPGGIVVF-SNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 356 k~gG~lvY-sTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 402 ~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~ 431 (516) T PRK03612 402 APDGLLVVQSTSPYFAPKAFWSIEATLEAA 431 (516) T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 999589993689755220346899999983 |
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.019 Score=37.83 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=91.7 Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCEEEE--CCCCCCHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCCC--CC Q ss_conf 23222356321331003556447000010--25684100010596798776544320488--74177207744577--43 Q gi|254780666|r 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYC--PK 304 (445) Q Consensus 231 ql~~~~l~~~~g~~VLD~CAAPGGKT~~l--~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~~~~~--~~ 304 (445) T Consensus 57 Mm~~LLf~p~P-k~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~-lP~dd~Rl~V~~~Dg~~fv~~~~ 134 (262) T PRK04457 57 MMGFLLFNPRP-QHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFE-LPFEDEKFEIIEADGAEYIKVFP 134 (262) T ss_pred HHHHHHCCCCC-CEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC-CCCCCCCEEEEECCHHHHHHHCC T ss_conf 99998658997-86999925701999999983986758999878899999998657-99999726999553899985486 Q ss_pred CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 44766896167421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 305 ~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 135 ~~~DvI~vD~f-d~~g~----~~--------~-----L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~-~~~~l~~i~~~F 195 (262) T PRK04457 135 ASTDVILVDGF-DGEQI----VD--------A-----LVTQPFFRDCRNALSSDGVFVTNLWSGDKR-YQRYIERLLSVF 195 (262) T ss_pred CCCCEEEEECC-CCCCC----CC--------C-----CCCHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHHHHH T ss_conf 77788999688-98888----60--------0-----082999999998649893999986889986-599999999972 Q ss_pred CCCEEECC Q ss_conf 87417813 Q gi|254780666|r 385 PIPVELVP 392 (445) Q Consensus 385 ~~~~~~~~ 392 (445) T Consensus 196 ~~~~~~~~ 203 (262) T PRK04457 196 EGRVLELP 203 (262) T ss_pred CCEEEEEE T ss_conf 87399972 |
|
| >pfam08003 Methyltransf_9 Protein of unknown function (DUF1698) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.03 Score=36.44 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=74.5 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEE Q ss_conf 22235632133100355644700001025684-10001059679877654432048874-17720774457743447668 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAV 310 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~i 310 (445) T Consensus 107 l~~~i~~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~~~FDtV 186 (315) T pfam08003 107 VLPHLSPLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALEAFDTV 186 (315) T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCCCEE T ss_conf 87342242689887517786499998622399879988981999999999999708987568853676548663421557 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCH Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne 374 (445) T Consensus 187 F------sMGVLYH------rrsP~~----------hL~~Lk~~L~~gGeLvLETlvi~gd~~~ 228 (315) T pfam08003 187 F------SMGVLYH------RRSPLD----------HLLQLKDQLVKGGELVLETLVIEGDENT 228 (315) T ss_pred E------EEEEEEC------CCCHHH----------HHHHHHHHCCCCCEEEEEEEEECCCCCE T ss_conf 7------6544432------689899----------9999998528797899998776598872 |
This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.026 Score=36.86 Aligned_cols=115 Identities=27% Similarity=0.280 Sum_probs=82.5 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEE Q ss_conf 5632133100355644700001025--684100010596798776544320488741772077445774----3447668 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAV 310 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~i 310 (445) T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231) T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVI 149 (231) T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHCCCCCEE T ss_conf 7769998789950367985767776047870899996444699999998747--87400201368837765312454389 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHH-HHHHHHCCCCCEEEEE--ECCCC-HHHCHHHHH Q ss_conf 96167421100110110333288667788999999999-9999860898289997--74788-343999899 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL-LQGISFVKPGGIVVFS--NCSLD-KQDSEEVVQ 378 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL-~~a~~~lk~gG~lvYs--TCSi~-~eEne~vV~ 378 (445) T Consensus 150 y~DVA---------Qp----------------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~ 196 (231) T COG1889 150 YQDVA---------QP----------------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFK 196 (231) T ss_pred EEECC---------CC----------------HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHH T ss_conf 98368---------81----------------0789999889973216973999998512304589899999 |
|
| >KOG1596 consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.034 Score=36.04 Aligned_cols=120 Identities=24% Similarity=0.238 Sum_probs=87.3 Q ss_pred CCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCCE Q ss_conf 56321331003556447000010---256841000105967987765443204887417720774457743----44766 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFDA 309 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD~ 309 (445) T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDv 229 (317) T KOG1596 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDV 229 (317) T ss_pred EEECCCCEEEEEECCCCCEEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCC--CCCEEEEECCCCCHHEEEEEEEEEE T ss_conf 25358866999633678433300003077743999984355328899876426--8700245047785003566105778 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE---EECCCCHHHCHHHHHHHHH Q ss_conf 896167421100110110333288667788999999999999986089828999---7747883439998999999 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF---SNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY---sTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 230 IFaDva---------qpd---------q~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~ 281 (317) T KOG1596 230 IFADVA---------QPD---------QA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVK 281 (317) T ss_pred EECCCC---------CCH---------HH------HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 962689---------703---------44------54533466650268718999854654444547888999999 |
|
| >pfam12147 Hydrolase_5 Putative lysophospholipase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.026 Score=36.87 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=87.9 Q ss_pred CCCEECCCCCCCCCEEEECCCC----CCHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCC----CCCCCEEEE Q ss_conf 3310035564470000102568----4100010596798776544320488741-772077445774----344766896 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSG----AKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCP----KKLFDAVLV 312 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~----~~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~~~~~----~~~fD~iLl 312 (445) T Consensus 136 ~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l~IV 215 (311) T pfam12147 136 PVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTLAIV 215 (311) T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCEEEE T ss_conf 56999851686162999998579887458851488877999999999749620006740576797676326999978997 Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 1674211001101103332886677889999999999999860898289997747883439998999999688 Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 216 ----SGL----------yELF~dN-----~lv~~sl~Gl~~ai~~gGyLIYTgQPWHPQ--Le~IAr~LtSHr 267 (311) T pfam12147 216 ----SGL----------YELFPDN-----DLVRRSLAGLAQAVEPGGYLIYTGQPWHPQ--LEMIARALTSHR 267 (311) T ss_pred ----ECH----------HHHCCCH-----HHHHHHHHHHHHHCCCCCEEEECCCCCCHH--HHHHHHHHHCCC T ss_conf ----012----------6636872-----999999999997508997899829988667--999999972566 |
This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.024 Score=37.07 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=102.7 Q ss_pred CCC-CCEECCCCCCCCCEEEEC--CC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCC---CCCEE Q ss_conf 213-310035564470000102--56--8410001059679877654432048874-177207744577434---47668 Q gi|254780666|r 240 LNN-LSVLDLCAAPGGKTAQLI--VS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAV 310 (445) Q Consensus 240 ~~g-~~VLD~CAAPGGKT~~l~--~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~---~fD~i 310 (445) T Consensus 124 ~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 203 (311) T TIGR00536 124 PPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKLDLL 203 (311) T ss_pred CCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEE T ss_conf 77650111014563156665543046666226641122367888887677643201200101124443320366522366 Q ss_pred EECCCCCCCCHHHCC-CHHHHCCCHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHH Q ss_conf 961674211001101-103332886677----88999999999999986089828999774788343999899 Q gi|254780666|r 311 LVDAPCSSTGTIRRH-PDVLWTRDTDDI----VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 (445) Q Consensus 311 LlDaPCSg~Gt~rr~-Pd~~w~~~~~~l----~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~ 378 (445) T Consensus 204 ~~~ppy~~~~~~~~~~~~~~~~~p~~~l~~~g~~g~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 276 (311) T TIGR00536 204 VSNPPYIDEEDLADLSPGVVLFEPLLALVGFGDDGLKILKRILELAPDYLKPGGFLLLEIGNWQLGLLKELLR 276 (311) T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH T ss_conf 4588654413455531123432003454304740078999998754543056755899616223567787664 |
Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation. |
| >TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.02 Score=37.74 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=85.6 Q ss_pred CCCCEECCCCCCCCCE--EE-ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCC---CCCCCCCCEEEECC Q ss_conf 1331003556447000--01-025684100010596798776544320488741772077445---77434476689616 Q gi|254780666|r 241 NNLSVLDLCAAPGGKT--AQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDA 314 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT--~~-l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~---~~~~~~fD~iLlDa 314 (445) T Consensus 49 ~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E~~g~~~~~~~~D~~~~-- 126 (197) T TIGR00138 49 TGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNNVEILNGRVEDLGSKQHEEQFDVITS-- 126 (197) T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCCCCCCCEEEE-- T ss_conf 331267734789714565342205764289842774068999999998389982420011255055453335787898-- Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHH Q ss_conf 74211001101103332886677889999999999999860898289997747883439998 Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 (445) Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~v 376 (445) T Consensus 127 -----------------RAl~~l-------~~~~e~~~~L~~~~G~~~~~KG~~~~~E~~~~ 164 (197) T TIGR00138 127 -----------------RALVSL-------NELLELTLPLLKVGGYFLAYKGKYLEDEIEEK 164 (197) T ss_pred -----------------CCCHHH-------HHHHHHHHHCCCCCCEEEEECCCCHHHHHHCC T ss_conf -----------------031024-------68888663037889789997086658887605 |
Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle. |
| >pfam01564 Spermine_synth Spermine/spermidine synthase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.088 Score=32.94 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=84.6 Q ss_pred CCCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCC--CC--CEEEEECCCCCCCC--CCCCCEEEEC Q ss_conf 3310035564470000102568--410001059679877654432048--87--41772077445774--3447668961 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLH--LY--AEDIIEMDAFDYCP--KKLFDAVLVD 313 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g--~~--~~~~~~~D~~~~~~--~~~fD~iLlD 313 (445) T Consensus 76 pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII~D 155 (240) T pfam01564 76 PKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVIIVD 155 (240) T ss_pred CCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEE T ss_conf 55367645865799999856799538999757889999999987985243479855999816899998572544589995 Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 6742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 156 ~~---------DP~~-----~~----~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~--~~~~~~~~i~~~ 205 (240) T pfam01564 156 ST---------DPVG-----PA----ENLFSKEFYDLLKRALKEDGVFVTQAESPW--LHLELIINILKN 205 (240) T ss_pred CC---------CCCC-----HH----HHHHHHHHHHHHHHHCCCCCEEEEECCCHH--HCHHHHHHHHHH T ss_conf 89---------9765-----33----444229999999986599978999248834--379999999999 |
Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. |
| >TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0089 Score=40.32 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=103.7 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------C Q ss_conf 2235632133100355644700001025---68410001059679877654432048874177207744577-------4 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------P 303 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-------~ 303 (445) T Consensus 20 v~~L~ik~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~F~~~~~~~~~~~~ 99 (323) T TIGR00006 20 VEGLNIKPDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDNFANFFEYLKELDL 99 (323) T ss_pred HHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCC T ss_conf 72765488873654025851789999852399950788747989999999985321067578850760342003211588 Q ss_pred CCCCCEEEECCCCCCC--------------CHH--HCCCH-HH-------HCCCHHHHHH-------------------- Q ss_conf 3447668961674211--------------001--10110-33-------3288667788-------------------- Q gi|254780666|r 304 KKLFDAVLVDAPCSST--------------GTI--RRHPD-VL-------WTRDTDDIVK-------------------- 339 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~--------------Gt~--rr~Pd-~~-------w~~~~~~l~~-------------------- 339 (445) T Consensus 100 ~~k~dGIL~DLGVSS~QLD~~~RGFSF~~d~PLDMRMD~s~~~~sA~e~~~~~~~~dL~~il~~yGEe~~~KrIA~~I~e 179 (323) T TIGR00006 100 VTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSSQKLSAAEVLNTYSEEDLERILKKYGEEKFSKRIARAIVE 179 (323) T ss_pred EEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 15774588615776031187888826467879665456555657789998400089999999872520243067899999 Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH Q ss_conf -----------------------------------------------999999999999986089828999774788343 Q gi|254780666|r 340 -----------------------------------------------SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445) Q Consensus 340 -----------------------------------------------l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445) T Consensus 180 ~~~~~p~~tT~~Lae~i~~a~p~f~K~k~~hPAtrvFQAiRI~vNdEL~~L-e~~L~~~~~~L~~~Grl--~vIsFHSLE 256 (323) T TIGR00006 180 ARKKKPIQTTKELAELISKAVPGFSKHKSIHPATRVFQAIRIYVNDELEEL-EEALQQAPNLLKPGGRL--SVISFHSLE 256 (323) T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEE--EEEEHHHHH T ss_conf 984278875778999999744761004788851255535677888789999-99999999841789718--987400056 Q ss_pred CHHHHHHHHHHCCCCEE Q ss_conf 99989999996887417 Q gi|254780666|r 373 SEEVVQKVLRSSPIPVE 389 (445) Q Consensus 373 ne~vV~~fL~~~~~~~~ 389 (445) T Consensus 257 -DriVK~~f~~~s~~~~ 272 (323) T TIGR00006 257 -DRIVKNFFKELSKFPQ 272 (323) T ss_pred -HHHHHHHHHHHCCCCC T ss_conf -7999999986147667 |
Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity. |
| >TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0057 Score=41.75 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=90.3 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 21331003556447000010256841000105967987765443204887417720774457743447668961674211 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445) T Consensus 72 v~PcKtLDLGCGqGrNsLyLsl~GYDV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa~~~e~YDFI~sTV----- 146 (239) T TIGR00477 72 VKPCKTLDLGCGQGRNSLYLSLAGYDVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAAALDEDYDFILSTV----- 146 (239) T ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEH----- T ss_conf 379865326888853789997616841012168668875998887626711004655433554012787421020----- Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEE---E----C----CCCHHHCHHH Q ss_conf 00110110333288667788999999999999986089828-9997---7----4----7883439998 Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-VVFS---N----C----SLDKQDSEEV 376 (445) Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~-lvYs---T----C----Si~~eEne~v 376 (445) T Consensus 147 --------Vf~FL~a~rvP-------~iIanMq~hT~pGGYNLIVaAMdTaDyPC~~pFsFtFkE~ELr 200 (239) T TIGR00477 147 --------VFMFLEAERVP-------EIIANMQEHTKPGGYNLIVAAMDTADYPCTLPFSFTFKEDELR 200 (239) T ss_pred --------HHHHHCCCCCH-------HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH T ss_conf --------12210588772-------6788658746798732223321578888885387344106788 |
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.012 Score=39.50 Aligned_cols=146 Identities=16% Similarity=0.243 Sum_probs=81.4 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCC---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------CC Q ss_conf 22356321331003556447000010256---8410001059679877654432048874177207744577------43 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PK 304 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~~ 304 (445) T Consensus 16 i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i 94 (314) T COG0275 16 VELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGI 94 (314) T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHCCC T ss_conf 985264899479982377747689999858988708997689899999999853037-8489995768789988876388 Q ss_pred CCCCEEEECCCCCCCCH----------------HHCCCHHH-------HCCCHHHHH----------------------- Q ss_conf 44766896167421100----------------11011033-------328866778----------------------- Q gi|254780666|r 305 KLFDAVLVDAPCSSTGT----------------IRRHPDVL-------WTRDTDDIV----------------------- 338 (445) Q Consensus 305 ~~fD~iLlDaPCSg~Gt----------------~rr~Pd~~-------w~~~~~~l~----------------------- 338 (445) T Consensus 95 ~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~arrIA~aIv~~R 174 (314) T COG0275 95 GKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAKRIARAIVERR 174 (314) T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 72227999536783202887678602788986567488889789999855999999999998451766899999999986 Q ss_pred --------------------------------------------HHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHHC Q ss_conf --------------------------------------------899999999999998608982899977-47883439 Q gi|254780666|r 339 --------------------------------------------KSACFQRKLLLQGISFVKPGGIVVFSN-CSLDKQDS 373 (445) Q Consensus 339 --------------------------------------------~l~~~Q~~iL~~a~~~lk~gG~lvYsT-CSi~~eEn 373 (445) T Consensus 175 ~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L-~~~L~~a~~~L~~~GRl~VIsFHSLE---- 249 (314) T COG0275 175 KKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEEL-EEALEAALDLLKPGGRLAVISFHSLE---- 249 (314) T ss_pred CCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHEEEEHHHHHHH-HHHHHHHHHHHCCCCEEEEEEECCHH---- T ss_conf 2698766999999999867701113678950665634100005679999-99999999961889679999953428---- Q ss_pred HHHHHHHHHHCC Q ss_conf 998999999688 Q gi|254780666|r 374 EEVVQKVLRSSP 385 (445) Q Consensus 374 e~vV~~fL~~~~ 385 (445) T Consensus 250 DRiVK~ff~~~s 261 (314) T COG0275 250 DRIVKNFFKELS 261 (314) T ss_pred HHHHHHHHHHHC T ss_conf 999999999840 |
|
| >KOG4589 consensus | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.29 Score=29.16 Aligned_cols=120 Identities=28% Similarity=0.340 Sum_probs=78.0 Q ss_pred CCCCCEECCCCCCCCCE---EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCC---------CCCC Q ss_conf 21331003556447000---0102568410001059679877654432048874177207-744577---------4344 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYC---------PKKL 306 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT---~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~---------~~~~ 306 (445) T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232) T KOG4589 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEE---------C--CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 8887799816788718999988628874288874331---------1--4888764014324688889999998679983 Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 766896167421100110110333288667788999999999999986089828999774788343999899999968 Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 137 VdvVlSDMapnaTGvr~~-----------Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~~l~r~l~~~ 200 (232) T KOG4589 137 VDVVLSDMAPNATGVRIR-----------DHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEALLQRRLQAV 200 (232) T ss_pred CCEEEECCCCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEECCCCHHHHHHHHHHH T ss_conf 218871357787675124-----------378999999999988632147785799---9970497328999999998 |
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.088 Score=32.97 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=77.7 Q ss_pred CCCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHH--HHCCC---CCC--EEEEECCCCCCCC--CCCCCEE Q ss_conf 3310035564470000102568--4100010596798776544--32048---874--1772077445774--3447668 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCN--LDRLH---LYA--EDIIEMDAFDYCP--KKLFDAV 310 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~--~~R~g---~~~--~~~~~~D~~~~~~--~~~fD~i 310 (445) T Consensus 140 ~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvI 219 (363) T PRK01581 140 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVI 219 (363) T ss_pred CCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEE T ss_conf 77389980764399999871798562789956999999875197998751200149804999210899986167544289 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHCHHHHHHHHHHC Q ss_conf 9616742110011011033328866778899999999999998608982899-9774788343999899999968 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv-YsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 220 IVDlP---------DP~------n~~L~KLYS--~eFY~Ll~~~La~dG~~vVQSTSPyfApkaFWsI~~Tl~aA 277 (363) T PRK01581 220 IIDFP---------DPA------TELLSTLYT--SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHA 277 (363) T ss_pred EEECC---------CCC------CHHHHHHHH--HHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHHHHC T ss_conf 99589---------998------624666735--99999999861988539996079765762336777779873 |
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.027 Score=36.75 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=82.9 Q ss_pred CCCEECCCCCCCCCEE--EECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-CCEEEECCCCCC Q ss_conf 3310035564470000--1025684100010596798776544320488741772077445774344-766896167421 Q gi|254780666|r 242 NLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSS 318 (445) Q Consensus 242 g~~VLD~CAAPGGKT~--~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~-fD~iLlDaPCSg 318 (445) T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215) T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215) T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCEEEEEEEC-- T ss_conf 887998579999731768885668818997167507999999999859997498631276601446657589854202-- Q ss_pred CCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH Q ss_conf 10011011033328866778899999999999998608982899977478834399989999 Q gi|254780666|r 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445) Q Consensus 319 ~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445) T Consensus 146 -----------------~L~-------~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~ 183 (215) T COG0357 146 -----------------SLN-------VLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAI 183 (215) T ss_pred -----------------CHH-------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf -----------------568-------89999998434688320265876555689999998 |
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.14 Score=31.36 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=85.6 Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCC--C--CCEEEEECCCCC Q ss_conf 632123222356321331003556447000010256--8410001059679877654432048--8--741772077445 Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH--L--YAEDIIEMDAFD 300 (445) Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g--~--~~~~~~~~D~~~ 300 (445) T Consensus 63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282) T COG0421 63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282) T ss_pred HHHHHHCHHHHCCCC-CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHH T ss_conf 999870306437997-7699988976699999983688433799970889999999866675433579736899610799 Q ss_pred CCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH Q ss_conf 774--34476689616742110011011033328866778899999999999998608982899977478834 Q gi|254780666|r 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445) Q Consensus 301 ~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445) T Consensus 142 ~v~~~~~~fDvIi~D~t---------dp~g---p~-~~-----Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282) T COG0421 142 FLRDCEEKFDVIIVDST---------DPVG---PA-EA-----LFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282) T ss_pred HHHHCCCCCCEEEECCC---------CCCC---CC-CC-----CCCHHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 98748876778998588---------9988---43-02-----377999999998628896899944784324 |
|
| >pfam10294 Methyltransf_16 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.13 Score=31.67 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=68.1 Q ss_pred CCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCC-----CCCCCCCCCCEE Q ss_conf 213310035564470000102--5684100010596798776544320488--7417720774-----457743447668 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDA-----FDYCPKKLFDAV 310 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~-----~~~~~~~~fD~i 310 (445) T Consensus 43 ~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~I 121 (171) T pfam10294 43 LSGKNVLELGSGCGLVGIAVALLLPGASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLI 121 (171) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEE T ss_conf 0687678705665758999998579858996383-789999999999705789966999811089884333146776789 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 9616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 122 l~-------------sD~iY--~~-------~~~~~L~~ti~~ll~~~g~~lla~-~~R~---~~~-~~F~~~ 167 (171) T pfam10294 122 LA-------------ADCVY--NE-------DAFPLLVKTLKDLLGKETVILVAY-KKRR---EAE-KRFFKL 167 (171) T ss_pred EE-------------ECEEE--CH-------HHHHHHHHHHHHHHCCCCEEEEEE-CCCC---HHH-HHHHHH T ss_conf 97-------------12133--57-------779999999999958998999997-8206---779-999999 |
|
| >pfam04989 CmcI Cephalosporin hydroxylase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.17 Score=30.75 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=76.2 Q ss_pred CCCCCEECCCCCCCCCEEE------ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-------CC Q ss_conf 2133100355644700001------0256841000105967987765443204887417720774457743-------44 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-------KL 306 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~------l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-------~~ 306 (445) T Consensus 31 ~kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~-----i~~~~I~lieg~s~d~~~~~~v~~~~~~ 105 (202) T pfam04989 31 LKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPA-----IEAPRITFIQGSSTDPEIIEQVRSLAEP 105 (202) T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-----HCCCCEEEEECCCCCHHHHHHHHHHHCC T ss_conf 59998999616766289999999997389987999957644335435-----3168769997685678899889998537 Q ss_pred CC--EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCC-CHHH---------- Q ss_conf 76--6896167421100110110333288667788999999999999986089828999-77478-8343---------- Q gi|254780666|r 307 FD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSL-DKQD---------- 372 (445) Q Consensus 307 fD--~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi-~~eE---------- 372 (445) T Consensus 106 ~~~vlVilDs~Ht~~hVl-----------------------~eL~~y~~lv~~GsY~IVeDTii~~~p~~~~~~r~w~~g 162 (202) T pfam04989 106 PHPVLVILDSDHTHEHVL-----------------------AELRAYAPLVSEGSYLVVEDTIIEDLPESPFPDRPWGKG 162 (202) T ss_pred CCCEEEEECCCCCHHHHH-----------------------HHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCC T ss_conf 985899964886568899-----------------------999987521576889999576243175566788868789 Q ss_pred -C-HHHHHHHHHHCCCCEEE Q ss_conf -9-99899999968874178 Q gi|254780666|r 373 -S-EEVVQKVLRSSPIPVEL 390 (445) Q Consensus 373 -n-e~vV~~fL~~~~~~~~~ 390 (445) T Consensus 163 nnP~~Av~eFL~~~~~-F~i 181 (202) T pfam04989 163 NNPKTAVTEFLAEHPE-FEI 181 (202) T ss_pred CCHHHHHHHHHHHCCC-CEE T ss_conf 8979999999987899-386 |
Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified. |
| >KOG2899 consensus | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.063 Score=34.03 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=83.3 Q ss_pred CCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHHHHCCCCCC---------------------------- Q ss_conf 133100355644700001025684--10001059679877654432048874---------------------------- Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYA---------------------------- 290 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g~~~---------------------------- 290 (445) T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288) T KOG2899 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288) T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 76205750677546589999860643346761568999999973566010103345787543354445410124466510 Q ss_pred --------------EEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHC-CCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf --------------17720774457743447668961674211001101103332-886677889999999999999860 Q gi|254780666|r 291 --------------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFV 355 (445) Q Consensus 291 --------------~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~-~~~~~l~~l~~~Q~~iL~~a~~~l 355 (445) T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlc----LSi--------TkWIHLNwgD-----~GL~~ff~kis~ll 199 (288) T KOG2899 138 TTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILC----LSI--------TKWIHLNWGD-----DGLRRFFRKISSLL 199 (288) T ss_pred CCCCCCCHHCCCCCEEEECCHHH-HHCCCCCCEEEE----EEE--------EEEEECCCCC-----HHHHHHHHHHHHHH T ss_conf 03677201013233798600455-505654227999----773--------3467645645-----78999999999860 Q ss_pred CCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEECCCCCCCC Q ss_conf 8982899977478834399989999996887417813763233 Q gi|254780666|r 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 (445) Q Consensus 356 k~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~~~~~~~~~ 398 (445) T Consensus 200 ~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~ 242 (288) T KOG2899 200 HPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDW 242 (288) T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCHHHHHHH T ss_conf 8685799758861779999999998605840103288898765 |
|
| >KOG1541 consensus | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.41 Score=27.98 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=85.8 Q ss_pred CCEECCCCCCCCCCCCCCCC--CCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECC-C Q ss_conf 10134632123222356321--33100355644700001025684100010596798776544320488741772077-4 Q gi|254780666|r 222 VWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-A 298 (445) Q Consensus 222 ~~~VQD~aSql~~~~l~~~~--g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D-~ 298 (445) T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--~e~e---gdlil~DMG 103 (270) T KOG1541 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--RELE---GDLILCDMG 103 (270) T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCCCCEEEEECCCHHHHHHHHH--HHHH---CCEEEEECC T ss_conf 43221778887898760899887179983457774320021689558862289899999997--6640---476631247 Q ss_pred CCC-CCCCCCCEEEE-CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHH---HHHHHHCCCCCEEEEEECCCCHHHC Q ss_conf 457-74344766896-167421100110110333288667788999999999---9999860898289997747883439 Q gi|254780666|r 299 FDY-CPKKLFDAVLV-DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL---LQGISFVKPGGIVVFSNCSLDKQDS 373 (445) Q Consensus 299 ~~~-~~~~~fD~iLl-DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL---~~a~~~lk~gG~lvYsTCSi~~eEn 373 (445) T Consensus 104 ~GlpfrpGtFDg~ISISA-------------vQWLcnA~--~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q----fYpen 164 (270) T KOG1541 104 EGLPFRPGTFDGVISISA-------------VQWLCNAD--KSLHVPKKRLLRFFGTLYSCLKRGARAVLQ----FYPEN 164 (270) T ss_pred CCCCCCCCCCCEEEEEEE-------------EEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCC T ss_conf 887889974124788620-------------32101468--444673899999866453210368615888----52454 Q ss_pred HHHHHHHHHH Q ss_conf 9989999996 Q gi|254780666|r 374 EEVVQKVLRS 383 (445) Q Consensus 374 e~vV~~fL~~ 383 (445) T Consensus 165 ~~q~d~i~~~ 174 (270) T KOG1541 165 EAQIDMIMQQ 174 (270) T ss_pred HHHHHHHHHH T ss_conf 6799999999 |
|
| >KOG1975 consensus | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.057 Score=34.36 Aligned_cols=129 Identities=21% Similarity=0.266 Sum_probs=70.4 Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCEEEE-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 123222356321331003556447000010-2568410001059679877654432048874177207744577434476 Q gi|254780666|r 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 (445) Q Consensus 230 Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD 308 (445) T Consensus 108 s~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r------------~~~~~f~ 173 (389) T KOG1975 108 SVLINLY--TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR------------FKKFIFT 173 (389) T ss_pred HHHHHHH--HCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHH------------HHCCCCE T ss_conf 9999998--6122300000567762076765514563576534340099999999999866------------6413651 Q ss_pred EEEECCCCCCCCHHHCC--CHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHH Q ss_conf 68961674211001101--103-----------33288667788999999999999986089828999774788343999 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRH--PDV-----------LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~--Pd~-----------~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~ 375 (445) T Consensus 174 a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFete------e~ar~~l~Nva~~LkpGG~FIgTi------Pdsd 241 (389) T KOG1975 174 AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE------ESARIALRNVAKCLKPGGVFIGTI------PDSD 241 (389) T ss_pred EEEEEECCCHHHHHHHCCCCCCCCCEEEEEEEEEEEECCH------HHHHHHHHHHHHHCCCCCEEEEEC------CCHH T ss_conf 6999714416689874257898855565545675431338------889999998996358885799846------9689 Q ss_pred HHHHHHHHC Q ss_conf 899999968 Q gi|254780666|r 376 VVQKVLRSS 384 (445) Q Consensus 376 vV~~fL~~~ 384 (445) T Consensus 242 ~Ii~rlr~~ 250 (389) T KOG1975 242 VIIKRLRAG 250 (389) T ss_pred HHHHHHHHC T ss_conf 999999851 |
|
| >pfam05724 TPMT Thiopurine S-methyltransferase (TPMT) | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.17 Score=30.92 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=72.0 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHH------------HCCCCCCEEEEECCCCCCCCC Q ss_conf 56321331003556447000010256841000105967987765443------------204887417720774457743 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL------------DRLHLYAEDIIEMDAFDYCPK 304 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~------------~R~g~~~~~~~~~D~~~~~~~ 304 (445) T Consensus 18 l~~~~~~rvlVPlCGks~D~~wLa~~G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~ 97 (203) T pfam05724 18 LNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPRE 97 (203) T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHH T ss_conf 38999988999689985999999838984899956799999999973788751013662132058648997732137843 Q ss_pred --CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH Q ss_conf --44766896167421100110110333288667788999999999999986089828999774788343 Q gi|254780666|r 305 --KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 (445) Q Consensus 305 --~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eE 372 (445) T Consensus 98 ~~g~fD~IyDraal~AL-----pp~~R---------------~~Ya~~l~~lL~pgg~~lLitl~y~~~~ 147 (203) T pfam05724 98 ELGKFDLIYDRAALCAL-----PPEMR---------------PRYAKQMYELLPPGGEGLLITLDYPQTD 147 (203) T ss_pred HCCCCCEEEEECCEEEC-----CHHHH---------------HHHHHHHHHHHCCCCEEEEEEEECCCCC T ss_conf 46873489970323538-----98999---------------9999999997189966999999738655 |
This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. |
| >KOG2078 consensus | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.061 Score=34.13 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=84.6 Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCC--CCCEE---- Q ss_conf 32133100355644700001025684100010596798776544320488--74177207744577434--47668---- Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK--LFDAV---- 310 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~--~~~~~~~~D~~~~~~~~--~fD~i---- 310 (445) T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~~ 326 (495) T KOG2078 247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIADE 326 (495) T ss_pred CCCCCHHHHHHCCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHHHCCCCHHHHHHHHH T ss_conf 58741334440476743350222585899347997899999975653665613636644618887412874256677787 Q ss_pred EEC--CCCCCC-CH-HHCCCHHH---HCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCE----EEEEECCCCH--HH Q ss_conf 961--674211-00-11011033---3288667788999999999999986089-----828----9997747883--43 Q gi|254780666|r 311 LVD--APCSST-GT-IRRHPDVL---WTRDTDDIVKSACFQRKLLLQGISFVKP-----GGI----VVFSNCSLDK--QD 372 (445) Q Consensus 311 LlD--aPCSg~-Gt-~rr~Pd~~---w~~~~~~l~~l~~~Q~~iL~~a~~~lk~-----gG~----lvYsTCSi~~--eE 372 (445) T Consensus 327 v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~~~s 406 (495) T KOG2078 327 VLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCDVSS 406 (495) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCC T ss_conf 76543201023223345678741221044443321573999988987678874357445654305888987612567771 Q ss_pred CHH-HHHHHHHHCC Q ss_conf 999-8999999688 Q gi|254780666|r 373 SEE-VVQKVLRSSP 385 (445) Q Consensus 373 ne~-vV~~fL~~~~ 385 (445) T Consensus 407 ~e~~V~ar~~~~~k 420 (495) T KOG2078 407 TEDLVTARIVAALK 420 (495) T ss_pred HHHHHHHHHHHHCC T ss_conf 58899998876046 |
|
| >TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.056 Score=34.41 Aligned_cols=124 Identities=16% Similarity=0.284 Sum_probs=93.5 Q ss_pred CCCEECCCCCCCCCEEEECCC--CCCHHHHHC--------CHHHHHHHHHHHHCCCCC--CEEEEECCCCCCCC----CC Q ss_conf 331003556447000010256--841000105--------967987765443204887--41772077445774----34 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVS--GAKVTALDV--------SKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCP----KK 305 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~--------~~~Rl~~l~~~~~R~g~~--~~~~~~~D~~~~~~----~~ 305 (445) T Consensus 20 ~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~~~~~~ 99 (216) T TIGR00091 20 KPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEKFFPDG 99 (216) T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCC T ss_conf 54489841687602689977279972777899988741022728998875576617844213522136023204540078 Q ss_pred --CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH- Q ss_conf --47668961674211001101103332886677889999999999999860898289997747883439998999999- Q gi|254780666|r 306 --LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR- 382 (445) Q Consensus 306 --~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~- 382 (445) T Consensus 100 PP~l~k~f~~FP-----------D-PW~KkRH~KRR--~~~~~Fl~~~~~~L~~~G~i~~~T------D~~~lfE~mL~~ 159 (216) T TIGR00091 100 PPSLSKVFLNFP-----------D-PWPKKRHNKRR--ITQPHFLKEVANVLKKGGVIELKT------DNEPLFEDMLKV 159 (216) T ss_pred CCCEEEEEEECC-----------C-CCHHHHHCCCC--CCCHHHHHHHHHHCCCCCEEEEEC------CCHHHHHHHHHH T ss_conf 980456888778-----------8-95102102234--256789999999704596899970------784678999999 Q ss_pred --HCC Q ss_conf --688 Q gi|254780666|r 383 --SSP 385 (445) Q Consensus 383 --~~~ 385 (445) T Consensus 160 l~~~~ 164 (216) T TIGR00091 160 LSEND 164 (216) T ss_pred HHHCC T ss_conf 96536 |
It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity. |
| >KOG0820 consensus | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.25 Score=29.56 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=87.9 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC Q ss_conf 563213310035564470000102568410001059679877654432048874-1772077445774344766896167 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP 315 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445) T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P~fd~cVsNlP 132 (315) T KOG0820 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LPRFDGCVSNLP 132 (315) T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-CCCCCEEECCCC T ss_conf 4789987799957987789999997208489994080789999998669986560468850312578-851031122698 Q ss_pred C--CCCCHHHCCCHHHHCCCHHHHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCHH Q ss_conf 4--2110011011033328866778899--999999999998608982899977478834 Q gi|254780666|r 316 C--SSTGTIRRHPDVLWTRDTDDIVKSA--CFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 (445) Q Consensus 316 C--Sg~Gt~rr~Pd~~w~~~~~~l~~l~--~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~e 371 (445) T Consensus 133 yqISSp~vfK-------LL~~~~~fr~AvlmfQ~E---fa~RLva~pgd~~Ycrlsin~q 182 (315) T KOG0820 133 YQISSPLVFK-------LLLHRPVFRCAVLMFQRE---FALRLVARPGDSLYCRLSINVQ 182 (315) T ss_pred CCCCCHHHHH-------HCCCCCCCCEEEEEHHHH---HHHHHCCCCCCCHHCEEEHHHH T ss_conf 5336788998-------627887760234402566---6555135889841100111137 |
|
| >cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=217.48 Aligned_cols=125 Identities=38% Similarity=0.448 Sum_probs=116.2 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 46999999999999955998899999985112321689889999999999999608999999999842881004889999 Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 (445) Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~~~~~~~~~~~~ 84 (445) T Consensus 1 mnaR~~A~~iL~~V~~~~~~~~~~l~~~~~----~~l~~~Dra~~~~lv~g~lR~~~~ld~~l~~~l~~p~~~~~~~~~~ 76 (126) T cd00620 1 MNARSTAAEVLRDVLQRGASLNAVLSALQK----KDKSDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRN 76 (126) T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 989999999999999679989999999886----5799888999999999999819999999999857771107999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC Q ss_conf 99999999998689973325622587752258755444443102211001 Q gi|254780666|r 85 LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445) Q Consensus 85 iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445) T Consensus 77 lLrlg~yql~~~~~p~~A~VneaV~lak~~~-~~~~~~lVNAVLR~~~Re 125 (126) T cd00620 77 LLRLGLYQLLYLDVPPHAAVDETVEIAKIRK-DLGRAGLVNAVLRRFERE 125 (126) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCC T ss_conf 9999999987079996106999999999868-997666138983087625 |
The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli. |
| >pfam01029 NusB NusB family | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-21 Score=175.67 Aligned_cols=124 Identities=31% Similarity=0.385 Sum_probs=113.4 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHH Q ss_conf 46999999999999955998899999985112321689889999999999999608999999999842-88100488999 Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQ 83 (445) Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~ 83 (445) T Consensus 1 ~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~----~~~~~d~~~~~~l~~gv~~~~~~id~~i~~~~~~~~~~~l~~~~~ 76 (126) T pfam01029 1 RNARELALQALYAVEERGASLNELLDKLLEA----DLDERDRAFATELVYGVLRNLEELDALIAKLLENWPLERLDPVDR 76 (126) T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH T ss_conf 9499999999999986098999999999871----898899999999999999989999999998855999666599999 Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 9999999999986-8997332562258775225875544444310221100 Q gi|254780666|r 84 QLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 (445) Q Consensus 84 ~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r 133 (445) T Consensus 77 ~iLr~a~~El~~~~~~p~~~~InE~v~lak~~~-~~~~~~fvNaVL~~i~r 126 (126) T pfam01029 77 AILRLAAYELLYLDDIPPHVAINEAVELAKKFG-GEKSAGFVNGVLRKIAR 126 (126) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHC T ss_conf 999999999985789982445899999999877-88643028999887549 |
The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. |
| >cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=171.91 Aligned_cols=125 Identities=27% Similarity=0.293 Sum_probs=112.9 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHH Q ss_conf 69999999999999559988999999851123216898899999999999996089999999998428-81004889999 Q gi|254780666|r 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQ 84 (445) Q Consensus 6 ~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~-~~~~~~~~~~~ 84 (445) T Consensus 1 ~AR~~a~~~L~~~~~~~~~~~~~l~~~~~~~---~l~~~d~~~~~~lv~gv~~~~~~ld~~i~~~l~~~~~~~~~~i~~~ 77 (129) T cd00447 1 SAREIAFQALYQVEIRNGISLEAVLSALEKL---QLAKKDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRA 77 (129) T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9899999999999820999999999999877---8977899999999999999699999999998278803110088899 Q ss_pred HHHHHHHHHHHC--CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC Q ss_conf 999999999986--89973325622587752258755444443102211001 Q gi|254780666|r 85 LLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445) Q Consensus 85 iLr~a~~ell~~--~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445) T Consensus 78 iLrl~~~el~~~~~~ip~~~~InE~v~lak~~~-~~~~~~fvNavLr~i~r~ 128 (129) T cd00447 78 ILRLLLYELYQLLYDVPPPVAINEAVELAKRFG-DDDSAKFVNGVLRRIAKE 128 (129) T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCC T ss_conf 999999999985058985167899999999867-886320079997798734 |
This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the |
| >PRK00202 nusB transcription antitermination protein NusB; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=168.47 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=115.6 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHH Q ss_conf 7846999999999999955998899999985112321689889999999999999608999999999842-881004889 Q gi|254780666|r 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYS 81 (445) Q Consensus 3 ~~~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~ 81 (445) T Consensus 2 ~R~~aR~~A~q~Ly~~~~~~~~~~~il~~~~~~~---~~~~~d~~~~~~lv~gv~~~~~~iD~~I~~~l~~w~~~rl~~v 78 (132) T PRK00202 2 ARRKAREAAVQALYQWELSGNDIAEIEAEFLEEQ---DGADADVAYFRELVSGVVENQEELDELISPHLKDWTLERLDPV 78 (132) T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH T ss_conf 5799999999999999851999999999999874---5655779999999999999699999999998559996424689 Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC Q ss_conf 999999999999986-89973325622587752258755444443102211001 Q gi|254780666|r 82 LQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445) Q Consensus 82 ~~~iLr~a~~ell~~-~~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445) T Consensus 79 ~~~ILr~a~yEl~~~~~~p~~v~InE~v~lak~~~-~~~~~~fVNgVLd~i~r~ 131 (132) T PRK00202 79 ERAILRLAAYELLFRDDVPYKVVINEAIELAKKFG-DEDSHKFVNGVLDKIAKE 131 (132) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH T ss_conf 99999999999985757754779999999999977-897213369999998752 |
|
| >cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=157.31 Aligned_cols=126 Identities=24% Similarity=0.251 Sum_probs=112.7 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHH Q ss_conf 469999999999999559988999999851123216898899999999999996089999999998428-8100488999 Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQ 83 (445) Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~~~~L~~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~~-~~~~~~~~~~ 83 (445) T Consensus 2 ~~aRe~a~q~LYq~~~~~~~~~~i~~~~~~~---~~~~~~d~~f~~~l~~gv~~~~~~iD~~I~~~l~~w~~~rl~~i~~ 78 (130) T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLLELL---QYKSKKVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVER 78 (130) T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHH T ss_conf 1999999999999670799999999999875---1133468999999999999849999999998718999676679999 Q ss_pred HHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHC Q ss_conf 99999999999868-9973325622587752258755444443102211001 Q gi|254780666|r 84 QLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 (445) Q Consensus 84 ~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~ 134 (445) T Consensus 79 ~ILr~a~~El~~~~~~p~~v~InEavelak~f~-~~~~~~fiNgVLd~i~k~ 129 (130) T cd00619 79 AILRLAVYELLFLPDVPHPVVINEAIELAKRFG-GDDSHKFVNGVLDKIAKD 129 (130) T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH T ss_conf 999999999986867634679999999999857-786204489999998751 |
NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. |
| >TIGR01951 nusB transcription antitermination factor NusB; InterPro: IPR011605 The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=152.01 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=111.3 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--CCCCCC Q ss_conf 469999999999999559988999999851123--21689889999999---99999960899999999984--288100 Q gi|254780666|r 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA--FRLLSQRDQILVRA---IVNVTLRFLPRIDAVLDFVL--ISSLPR 77 (445) Q Consensus 5 ~~aR~~A~~iL~~v~~~~~~~~~~l~~~~~~~~--~~~L~~~Dr~~~~~---Lv~gvlR~~~~ld~il~~~~--~~~~~~ 77 (445) T Consensus 2 ~~aR~~a~q~Ly~~e~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~f~~l~~Gv~~~~~~iD~~I~~~La~~W~l~R 81 (140) T TIGR01951 2 RKARELAFQALYQLELRGEDIDSLVEELALEEDDEAEDIDKKDKEYAEKFAELVRGVLENLEEIDELIEKHLAKDWTLER 81 (140) T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 58889999999998527998889999999887316898464668989999999989999999889999888634797235 Q ss_pred CCHHHHHHHHHHHHHHHHC--CCCCCC--CCCCHHHHHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 4889999999999999986--899733--2562258775225875544444310221100 Q gi|254780666|r 78 KKYSLQQLLRVSVAQILYL--DVADYA--VVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 (445) Q Consensus 78 ~~~~~~~iLr~a~~ell~~--~~p~~a--~vneaVelak~~~~~~~~~~~vNAVLR~~~r 133 (445) T Consensus 82 L~~VdraILRl~~yEl~~~~~D~P~~VA~~InEAielAK~ys~-~~s~kFiNGvLd~i~~ 140 (140) T TIGR01951 82 LSKVDRAILRLAAYELLYLKKDVPVKVAVVINEAIELAKKYSD-DKSSKFINGVLDAIAK 140 (140) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHCC T ss_conf 1287899999999999863689894054325789999998426-8764137877664329 |
The antitermination proteins of Escherichia coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle. The solution structure indicates that the protein folds into an alpha/alpha-helical topology consisting of six helices; the arginine-rich N-terminus appears to be disordered .; GO: 0003715 transcription termination factor activity, 0006353 transcription termination. |
| >COG0781 NusB Transcription termination factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=137.84 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=107.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC Q ss_conf 97784699999999999995599-8899999985112321689--889999999999999608999999999842-8810 Q gi|254780666|r 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLS--QRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLP 76 (445) Q Consensus 1 M~~~~~aR~~A~~iL~~v~~~~~-~~~~~l~~~~~~~~~~~L~--~~Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~ 76 (445) T Consensus 7 ~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~~ 86 (151) T COG0781 7 KLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPHLKKWSLE 86 (151) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 12589999999999999986588325678999999986212101453499999999999997999999999988069888 Q ss_pred CCCHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 048899999999999999868-997332562258775225875544444310221100111 Q gi|254780666|r 77 RKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 (445) Q Consensus 77 ~~~~~~~~iLr~a~~ell~~~-~p~~a~vneaVelak~~~~~~~~~~~vNAVLR~~~r~~~ 136 (445) T Consensus 87 rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e-~s~kFINgVLd~i~~~~~ 146 (151) T COG0781 87 RLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGE-DSHKFVNGVLDKIAKKLR 146 (151) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH T ss_conf 823999999999999999647999751299999999996778-733779999999998742 |
|
| >PRK09634 nusB transcription antitermination protein NusB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=120.19 Aligned_cols=89 Identities=28% Similarity=0.389 Sum_probs=81.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC Q ss_conf 9999999999999608999999999842-881004889999999999999986899733256225877522587554444 Q gi|254780666|r 45 DQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 (445) Q Consensus 45 Dr~~~~~Lv~gvlR~~~~ld~il~~~~~-~~~~~~~~~~~~iLr~a~~ell~~~~p~~a~vneaVelak~~~~~~~~~~~ 123 (445) T Consensus 113 VR~~a~~~i~~v~~~~~eID~~i~~~~~~W~l~Rl~~iDr~ILRlAv~El~~~d~P~~VaInEAVELAk~ys-~~~s~~F 191 (206) T PRK09634 113 VREYALERVGLVIRNRDEIDELLDEVMVGWQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYS-DEQGRRF 191 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCHHH T ss_conf 999999999999975899999999872699877757889999999999980359995113999999999867-8861144 Q ss_pred CCCHHHHHHHC Q ss_conf 43102211001 Q gi|254780666|r 124 VNSILRRVSRE 134 (445) Q Consensus 124 vNAVLR~~~r~ 134 (445) T Consensus 192 INGVL~r~~~~ 202 (206) T PRK09634 192 INGVLRRLQDA 202 (206) T ss_pred HHHHHHHHHHH T ss_conf 99898889876 |
|
| >pfam02475 Met_10 Met-10+ like-protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-09 Score=91.03 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=86.1 Q ss_pred CCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC Q ss_conf 321331003556447000010256--8410001059679877654432048874-1772077445774344766896167 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP 315 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445) T Consensus 98 ~~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~~~~~~DrvimnlP 177 (199) T pfam02475 98 VKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVILEGVADRVIMNLP 177 (199) T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECCC T ss_conf 48998899816886577899864078648999828999999999999980999836999287878604674009994897 Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 421100110110333288667788999999999999986089828999 Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 (445) Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445) T Consensus 178 ~~a--------------------------~~fL~~A~~~lk~gg~iHy 199 (199) T pfam02475 178 KSA--------------------------HEFLDKALRAVKDGGVIHY 199 (199) T ss_pred CCH--------------------------HHHHHHHHHHHCCCCEEEC T ss_conf 316--------------------------9999999998558989839 |
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-09 Score=84.66 Aligned_cols=125 Identities=19% Similarity=0.335 Sum_probs=97.7 Q ss_pred CCCCCEECCCCCCCCCEEEEC--CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCC Q ss_conf 213310035564470000102--568410001059679877654432048874-17720774457743447668961674 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~--~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445) T Consensus 132 ~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~l~~~~fDlIvSNPPY 211 (307) T PRK11805 132 EQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRRYDLIVSNPPY 211 (307) T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEECCCC T ss_conf 78872777427827999999987899889998589999999999999838877389980402212688750779967997 Q ss_pred CCCCHHHCC-CHHHHCCCHHH-H---HHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 211001101-10333288667-7---88999999999999986089828999774 Q gi|254780666|r 317 SSTGTIRRH-PDVLWTRDTDD-I---VKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 317 Sg~Gt~rr~-Pd~~w~~~~~~-l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 212 I~~~~~~~L~~ev~~--EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG 264 (307) T PRK11805 212 VDAEDMADLPAEYRH--EPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVG 264 (307) T ss_pred CCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 885656339775315--87888768924889999999988974476968999979 |
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-09 Score=88.31 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=95.0 Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC Q ss_conf 6321232223563213310035564470000102---5684100010596798776544320488741772077445774 Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 (445) Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~ 303 (445) T Consensus 59 ~~gCGnP~~~a~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl 138 (258) T PRK11873 59 GLGCGNPTALAELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 138 (258) T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC T ss_conf 87889854546579999899947887775999999869997799985999999999999997599755999955531368 Q ss_pred -CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf -344766896167421100110110333288667788999999999999986089828999774788 Q gi|254780666|r 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 304 -~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 139 ~D~SfDvViS------ncVlnl~pD----------------k~~vl~E~~RVLKPGGRl~ISDiv~~ 183 (258) T PRK11873 139 ADGSVDVIIS------NCVINLSPD----------------KERVFREAFRVLKPGGRFAISDVVLT 183 (258) T ss_pred CCCCEEEEEE------CCEEECCCC----------------HHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 9883519988------246760798----------------79999999996288978999974127 |
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-09 Score=85.08 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=95.1 Q ss_pred CCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCC Q ss_conf 32133100355644700001025--68410001059679877654432048874-1772077445774344766896167 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAP 315 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445) T Consensus 119 ~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~~~~~~fDlIVSNPP 198 (284) T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP 198 (284) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCEEEECCC T ss_conf 36777155521680799999998789987999989999999999999860854336888351433145777787997799 Q ss_pred CCCCCHHHCC-CHHHHCCCHHH-H---HHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 4211001101-10333288667-7---88999999999999986089828999 Q gi|254780666|r 316 CSSTGTIRRH-PDVLWTRDTDD-I---VKSACFQRKLLLQGISFVKPGGIVVF 363 (445) Q Consensus 316 CSg~Gt~rr~-Pd~~w~~~~~~-l---~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445) T Consensus 199 YI~~~e~~~l~~ev~~--EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~l 249 (284) T TIGR03533 199 YVDAEDMADLPAEYHH--EPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284) T ss_pred CCCHHHHHHCCHHHCC--CCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 7884655449764115--86998758955879999999988984256978999 |
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-09 Score=86.61 Aligned_cols=109 Identities=26% Similarity=0.304 Sum_probs=86.7 Q ss_pred CCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECCC Q ss_conf 632133100355644700001025684100010596798776544320488741772077445774--344766896167 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDaP 315 (445) T Consensus 45 ~~l~G~~ILDVGCGgG~lse~LAr~Ga~VtGID~S~~~I~~Ar~ha~~~~l-~i~y~~~~~e~l~~~~~~~FDvV~~--- 120 (233) T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLGATVTGIDASEENIEVARLHALESGL-KIDYRQITAEELAAEHPGQFDVVTC--- 120 (233) T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHCCCCEEEEEE--- T ss_conf 466899899975589711289996799799987998999999998564434-5116751476654305786347744--- Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 421100110110333288667788999999999999986089828999774788 Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 121 ---~EVlE----------------HV~d~~~~l~~~~rlLKPGG~l~lsTiNrt 155 (233) T PRK05134 121 ---MEMLE----------------HVPDPASFIRACAKLVKPGGLVFFSTLNRN 155 (233) T ss_pred ---EHHHH----------------HCCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf ---21477----------------538999999999997389914999726789 |
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.6e-09 Score=84.59 Aligned_cols=101 Identities=29% Similarity=0.407 Sum_probs=84.4 Q ss_pred CEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECCCCCCCC Q ss_conf 1003556447000010256-84100010596798776544320488741772077445774--34476689616742110 Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 (445) Q Consensus 244 ~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~G 320 (445) T Consensus 1 rVLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~~- 79 (107) T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107) T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCEECC- T ss_conf 9999988879999999956898899998988899999998753278864671488678863205753199991750106- Q ss_pred HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 011011033328866778899999999999998608982899977 Q gi|254780666|r 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 321 t~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 80 --------------------~~~~~~~l~~~~~~LkpgG~~~is~ 104 (107) T cd02440 80 --------------------VEDLARFLEEARRLLKPGGVLVLTL 104 (107) T ss_pred --------------------CCCHHHHHHHHHHHCCCCCEEEEEE T ss_conf --------------------5189999999998748581999999 |
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-08 Score=82.79 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=87.2 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEE Q ss_conf 235632133100355644700001025684100010596798776544320488741772077445774--344766896 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLV 312 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLl 312 (445) T Consensus 227 ~~~~~~~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvv 306 (375) T PRK03522 227 DWVRELPPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLV 306 (375) T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE T ss_conf 98631589789996578538889876417889999845999999999999869987699973778887634568978998 Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 167421100110110333288667788999999999999986089828999774788 Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 307 DPPR~Gl~-----~~--------~~~~l~~------------~~p-~~IvYVSCnP~ 337 (375) T PRK03522 307 NPPRRGIG-----KP--------LCDYLSQ------------MAP-RFILYSSCNAQ 337 (375) T ss_pred CCCCCCCH-----HH--------HHHHHHH------------CCC-CEEEEEECCHH T ss_conf 99977751-----99--------9999986------------599-96999907989 |
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-08 Score=80.81 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=101.3 Q ss_pred HHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEE Q ss_conf 1100101346321232223563213310035564470000102---568410001059679877654432048874-177 Q gi|254780666|r 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 (445) Q Consensus 218 f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~ 293 (445) T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256) T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256) T ss_pred CCCCCCEECCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEE T ss_conf 76787333577799999870999887899815680599999999648884599999527899999999998424561378 Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECC Q ss_conf 20774457743447668961674211001101103332886677889999999999999860898289-997747 Q gi|254780666|r 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV-VFSNCS 367 (445) Q Consensus 294 ~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~l-vYsTCS 367 (445) T Consensus 151 ~~~Dv~~~~~~~~vDav~LDmp------------~PW---------------~~le~~~~~Lkpgg~~~~y~P~v 198 (256) T COG2519 151 KLGDVREGIDEEDVDAVFLDLP------------DPW---------------NVLEHVSDALKPGGVVVVYSPTV 198 (256) T ss_pred EECCCCCCCCCCCCCEEEECCC------------CHH---------------HHHHHHHHHHCCCCEEEEECCCH T ss_conf 7054000246554677997589------------848---------------99999998717996799983978 |
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=76.91 Aligned_cols=121 Identities=23% Similarity=0.272 Sum_probs=97.5 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCC-CCCEE Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207-744577434-47668 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-DAFDYCPKK-LFDAV 310 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~-D~~~~~~~~-~fD~i 310 (445) T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI 268 (347) T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI 268 (347) T ss_pred HHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEE T ss_conf 87774164698764576783488883664275676032379998556641566276761688730221277887742358 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 96167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 269 atDPPY------Grst-------~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347) T COG1041 269 ATDPPY------GRST-------KIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347) T ss_pred EECCCC------CCCC-------CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 846998------7100-------245552899999999999987304848999617 |
|
| >pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-08 Score=82.53 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=93.0 Q ss_pred CCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-----CCCCCEEEECCCC Q ss_conf 310035564470000102568410001059679877654432048874-1772077445774-----3447668961674 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-----KKLFDAVLVDAPC 316 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-----~~~fD~iLlDaPC 316 (445) T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~sPPW 81 (165) T pfam09445 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLSPPW 81 (165) T ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 79999377807999999975898999979899999999989983987317999775999978876358875589977999 Q ss_pred CCCCHHHCC-CHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHH Q ss_conf 211001101-103332886677889999999999999860898289997747883439998999999 Q gi|254780666|r 317 SSTGTIRRH-PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 317 Sg~Gt~rr~-Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 82 GGp~Y~~~~~fdl~~~~~p~~~~~l~~~~~~it~ni~lfLP-------------rn~d~~ql~~~~~ 135 (165) T pfam09445 82 GGPSYKRQNVYDLEKKLKPYGLYQLLKESTEISKNIILFLP-------------RNSDLNQLSSLTR 135 (165) T ss_pred CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCEEEECC-------------CCCCHHHHHHHHH T ss_conf 99885656766877726877999999999863625799848-------------9899899999877 |
RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-08 Score=77.42 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=91.1 Q ss_pred CCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCCCCEEEECCCCCCC Q ss_conf 31003556447000010256--8410001059679877654432048874-17720774457743447668961674211 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~fD~iLlDaPCSg~ 319 (445) T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d~FD~V~s------~ 74 (224) T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG------F 74 (224) T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCEEEH------H T ss_conf 9089983668888999999779988999979999999999999972998651478521103999998356768------5 Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-C--CCCHHHCHHH---------HHHHHHHCCC Q ss_conf 0011011033328866778899999999999998608982899977-4--7883439998---------9999996887 Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN-C--SLDKQDSEEV---------VQKVLRSSPI 386 (445) Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT-C--Si~~eEne~v---------V~~fL~~~~~ 386 (445) T Consensus 75 evl~Hi~D----------------~~~~l~ei~RvLKPGG~lviaD~~~n~~~~i~~~~~~~~~~t~~eW~~ll~~~~l 137 (224) T smart00828 75 EVIHHIKD----------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNL 137 (224) T ss_pred HHHHCCCC----------------HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 35765399----------------9999999998717984999998533788877787630024789999999976785 |
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=74.61 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=87.7 Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCC Q ss_conf 35632133100355644700001025684100010596798776544320488741772077445774344766896167 Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 (445) Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445) T Consensus 25 ~~~~~~~g~~LDlgcG~Grna~~La~~G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~~~~yDlIl---- 100 (198) T PRK11207 25 AVKVVKPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTFDGEYDFIL---- 100 (198) T ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEE---- T ss_conf 7335899747772478878699998689859999799999999999998759982465620312388777705897---- Q ss_pred CCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 42110011011033328866778899999999999998608982899977 Q gi|254780666|r 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 316 CSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 101 --stvv~~-------fl~p~~~-------p~iia~mq~~t~PGG~~LIV~ 134 (198) T PRK11207 101 --STVVLM-------FLEAKTI-------PGLIANMQRCTKPGGYNLIVA 134 (198) T ss_pred --EEEEEE-------ECCHHHH-------HHHHHHHHHHCCCCCEEEEEE T ss_conf --864521-------0486678-------999999999608994899999 |
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=75.73 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=80.8 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECCCC Q ss_conf 21331003556447000010256841-00010596798776544320488741772077445774--3447668961674 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPC 316 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDaPC 316 (445) T Consensus 51 i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DPPY 130 (198) T PRK10909 51 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 130 (198) T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECCCC T ss_conf 29987998277746889999987997899997899999999999998488867999556999862559952189989997 Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 2110011011033328866778899999999999998608982899977 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 131 ~----------------~~~~---~~~l~~l~~--~~~L~~~gliiiE~ 158 (198) T PRK10909 131 R----------------KGLL---EETINLLEQ--NGWLADDALIYVES 158 (198) T ss_pred C----------------CCHH---HHHHHHHHH--CCCCCCCCEEEEEE T ss_conf 6----------------5559---999999998--88918996999995 |
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-07 Score=72.55 Aligned_cols=102 Identities=26% Similarity=0.389 Sum_probs=83.4 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECC Q ss_conf 56321331003556447000010256--8410001059679877654432048874177207744577434476689616 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDA 314 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDa 314 (445) T Consensus 27 l~~~~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~~-----~~~~f~~~D~~~~~~~~~~D~ifSNa 101 (252) T PRK01683 27 VPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQAL-----PDCQFVEADIRNWQPEQALDLIYANA 101 (252) T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC-----CCCEEEECCHHCCCCCCCCCEEEEEE T ss_conf 8888999899937749899999999779987999989899999999758-----99838725042078767878895610 Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 742110011011033328866778899999999999998608982899977 Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 102 a------------lhW~~d----------~~~~~~~~~~~L~PGG~la~Q~ 130 (252) T PRK01683 102 S------------LQWLPD----------HYELFPHLVSLLAPQGVLAVQM 130 (252) T ss_pred E------------HHHCCC----------HHHHHHHHHHHCCCCCEEEEEC T ss_conf 0------------450787----------7999999998248787999988 |
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-07 Score=74.33 Aligned_cols=103 Identities=23% Similarity=0.229 Sum_probs=84.4 Q ss_pred CCCCCCCC-CEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCC-CCCCEEEEECCCC------CCCC- Q ss_conf 35632133-10035564470000102---56841000105967987765443204-8874177207744------5774- Q gi|254780666|r 236 LFGTLNNL-SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDAF------DYCP- 303 (445) Q Consensus 236 ~l~~~~g~-~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~-g~~~~~~~~~D~~------~~~~- 303 (445) T Consensus 14 ~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~~~ 93 (135) T TIGR02469 14 KLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLNSDAPED 93 (135) T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHH T ss_conf 71789999468896057483899999735986079998537689879999999828999632563556843336777710 Q ss_pred ---CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf ---344766896167421100110110333288667788999999999999986089828999 Q gi|254780666|r 304 ---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 (445) Q Consensus 304 ---~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445) T Consensus 94 ~~~~~~~Da~fvGG----s--------------~~------~~-~~il~~~~~~l~~GGr~v~ 131 (135) T TIGR02469 94 SAKLPEPDAVFVGG----S--------------GG------KL-EEILEAVERRLRPGGRIVL 131 (135) T ss_pred HCCCCCCCEEEECC----C--------------CH------HH-HHHHHHHHHCCCCCCEEEE T ss_conf 05887468888838----9--------------71------78-9999999850596888888 |
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-07 Score=72.16 Aligned_cols=105 Identities=23% Similarity=0.260 Sum_probs=85.4 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCE Q ss_conf 223563213310035564470000102---5684100010596798776544320488741772077445774-344766 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~ 309 (445) T Consensus 69 l~~L~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~~apfD~ 148 (214) T PRK13942 69 CELLDLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEENAPYDR 148 (214) T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE T ss_conf 99727999997999679952999999997476785799971799999999999863768758985675667844598127 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 896167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 149 Iiv~aa~~~------iP~~----------------------l~~qL~~gGrLV~Pvg 177 (214) T PRK13942 149 IYVTAAGPD------IPKP----------------------LLEQLKDGGIMVIPVG 177 (214) T ss_pred EEEEECCCC------CCHH----------------------HHHHCCCCCEEEEEEC T ss_conf 999851765------7899----------------------9996288958999988 |
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.1e-07 Score=70.30 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=85.4 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEE Q ss_conf 2235632133100355644700001025684100010596798776544320488741772077445774-344766896 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLl 312 (445) T Consensus 71 l~~L~l~~~~~VLeIGtGsGY~tAlLa~l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~~~~pfD~Iii 150 (213) T PRK00312 71 TELLELKPGDRVLEIGTGSGYQAAVLAHLVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILV 150 (213) T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE T ss_conf 99843689975999659860999999986292899942899999999999984998769996887667876697248999 Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 16742110011011033328866778899999999999998608982899977 Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 151 ~~a~~~------~P~----------------------~l~~qL~~gGrLV~Pi 175 (213) T PRK00312 151 TAAAPE------IPR----------------------ALLDQLAEGGILVAPI 175 (213) T ss_pred EECCHH------HHH----------------------HHHHHCCCCCEEEEEE T ss_conf 843412------259----------------------9998453297999998 |
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=68.28 Aligned_cols=133 Identities=25% Similarity=0.412 Sum_probs=92.8 Q ss_pred CEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC- Q ss_conf 10035564470000102568--410001059679877654432048874177207744577434476689616742110- Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG- 320 (445) Q Consensus 244 ~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~G- 320 (445) T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIVsNPPYip~~~ 191 (280) T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIVSNPPYIPAED 191 (280) T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHCC-CCCCCEEEECCCCCCCCC T ss_conf 1899658831999999961898879999899999999999999828974798740033346-888577996899888852 Q ss_pred ------HHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf ------01101103332886677889999999999999860898289997747883439998999999688 Q gi|254780666|r 321 ------TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 321 ------t~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl----~~~~~i~~~a~~~l~~~g~l~l-e~g~~q---~~~v~~~~~~~~ 254 (280) T COG2890 192 PELLPEVVRYEPLLALVGGGDGL----EVYRRILGEAPDILKPGGVLIL-EIGLTQ---GEAVKALFEDTG 254 (280) T ss_pred CCCCCCCCCCCHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCCEEEE-EECCCC---HHHHHHHHHHCC T ss_conf 11374213589799872487778----9999999989987286828999-976984---899999999749 |
|
| >PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=66.98 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=97.9 Q ss_pred CCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCC Q ss_conf 3100355644700001025--68410001059679877654432048874177207744577434476689616742110 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~G 320 (445) T Consensus 111 ~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~-~v~~~~~dl~~~-~~~~~DlIvSNPPYI~~~ 188 (285) T PRK09329 111 QTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGL-DVDFLLGDLFAP-FSRPADAFVCNPPYLSFK 188 (285) T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCC-CEEEEECCHHHH-HCCCCCEEEECCCCCCHH T ss_conf 778884541799999999858986588033769999999999997299-479997630033-347678899899988844 Q ss_pred HHHC-CCHHHHCCCHH-HH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCC Q ss_conf 0110-11033328866-77---889999999999999860898289997747883439998999999688 Q gi|254780666|r 321 TIRR-HPDVLWTRDTD-DI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 (445) Q Consensus 321 t~rr-~Pd~~w~~~~~-~l---~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~ 385 (445) T Consensus 189 e~~~l~~eV~~~-EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~---Eig~~Q~~-~v~~l~~~~g 253 (285) T PRK09329 189 EFFHVDPEVRCH-EPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWL---EIGSSQGE-SVKKIFAKHG 253 (285) T ss_pred HHHHCCHHHHHC-CCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE---EECCHHHH-HHHHHHHHCC T ss_conf 454498755436-70998847973899999999999996004988999---96854899-9999999669 |
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.8e-07 Score=71.38 Aligned_cols=118 Identities=25% Similarity=0.273 Sum_probs=89.0 Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC Q ss_conf 01346321232223563213310035564470000102568410001059679877654432048874177207744577 Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 (445) Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~ 302 (445) T Consensus 24 A~~Q~~~a~~Ll~~l~~~~~~~vLDlGcGtG~~t~~l~~~~~~v~~~Dls~~Ml~~a~~~~-----~~~~~~~~D~e~Lp 98 (251) T PRK10258 24 ADLQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKD-----AADHYLAGDIESLP 98 (251) T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC-----CCHHHHHCHHHHCC T ss_conf 6999999999997366578993999831002789999974996999959899999998748-----63343536063099 Q ss_pred C-CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 4-3447668961674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 303 P-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 303 ~-~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 99 ~~~~sfDli~S-----~~~-------lqW~~d~----------~~~l~e~~rvLkPgG~l~fst~g 142 (251) T PRK10258 99 LATATFDLAWS-----NLA-------VQWCGNL----------STALRELYRVVRPGGVVAFTTLV 142 (251) T ss_pred CCCCCCCEEEE-----CCC-------HHHCCCH----------HHHHHHHHHHCCCCCEEEEECCC T ss_conf 98788217855-----040-------4525999----------99999999645899499998157 |
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-06 Score=67.55 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=102.7 Q ss_pred CCEECCCCCCCCCCCCC---------C----------CCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHH Q ss_conf 10134632123222356---------3----------21331003556447000010256841-0001059679877654 Q gi|254780666|r 222 VWWVQDASASIPVQLFG---------T----------LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRC 281 (445) Q Consensus 222 ~~~VQD~aSql~~~~l~---------~----------~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~ 281 (445) T Consensus 514 ~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~i~~~a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~ 593 (716) T PRK11783 514 FLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRMIGQMAKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER 593 (716) T ss_pred EEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHH T ss_conf 69999578689997772022674544379999999970788464312225610213352796122786270879999999 Q ss_pred HHHCCCCCC--EEEEECCCCCCCC--CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 432048874--1772077445774--344766896167421100110110333288667788999999999999986089 Q gi|254780666|r 282 NLDRLHLYA--EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 (445) Q Consensus 282 ~~~R~g~~~--~~~~~~D~~~~~~--~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~ 357 (445) T Consensus 594 N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPPt-----FSn------Sk~m~~~~dvqrDh~~li~~~~~~L~~ 662 (716) T PRK11783 594 NFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPPT-----FSN------SKRMEDSFDVQRDHVALIKLAMRLLRP 662 (716) T ss_pred HHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCCC-----CCC------CCCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 998549996347389640899998577766789988999-----987------666788632203099999999986089 Q ss_pred CCEEEEEECCCC Q ss_conf 828999774788 Q gi|254780666|r 358 GGIVVFSNCSLD 369 (445) Q Consensus 358 gG~lvYsTCSi~ 369 (445) T Consensus 663 ~G~l~FS~N~r~ 674 (716) T PRK11783 663 GGTLYFSNNKRG 674 (716) T ss_pred CCEEEEECCCCC T ss_conf 968999628876 |
|
| >pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-06 Score=68.48 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=94.7 Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC Q ss_conf 4632123222356321331003556447000010256-8410001059679877654432048874-1772077445774 Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303 (445) Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~ 303 (445) T Consensus 47 Q~~Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~-- 124 (273) T pfam02353 47 QQAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF-- 124 (273) T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC-- T ss_conf 999999999865889999899978880899999998479518999797899999999998708743212000626547-- Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 344766896167421100110110333288667788999999999999986089828999774788 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 125 ~~~fD~Iv------Siem~Ehvg~--------------~~~~~~f~~i~~~LkpgG~~~iq~i~~~ 170 (273) T pfam02353 125 DEPFDRIV------SVGMFEHVGH--------------ENYDTFFKKLYNLLPPGGLMLLHTITGL 170 (273) T ss_pred CCCCCEEE------EEHHHHHCCH--------------HHHHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 66666677------6516876287--------------7799999999986588973999999425 |
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. |
| >pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-06 Score=68.47 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=84.8 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-CCCCCCE Q ss_conf 22356321331003556447000010---2568410001059679877654432048874177207744577-4344766 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDA 309 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-~~~~fD~ 309 (445) T Consensus 66 l~~L~l~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~~~apfD~ 145 (205) T pfam01135 66 LELLELKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWPEFAPYDA 145 (205) T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE T ss_conf 99707899998999669965999999998387876999835899999999999984888658984564558833398058 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 896167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 146 Iiv~aa~~~------iP~----------------------~l~~qL~~gGrLv~pvg 174 (205) T pfam01135 146 IHVGAAAPE------IPE----------------------ALIDQLKEGGRLVIPVG 174 (205) T ss_pred EEEEEECCC------CCH----------------------HHHHHCCCCCEEEEEEC T ss_conf 999750676------889----------------------99996287978999987 |
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-06 Score=68.28 Aligned_cols=107 Identities=25% Similarity=0.304 Sum_probs=81.7 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCCCCC Q ss_conf 21331003556447000010256841000105967987765443204887417720774457743-44766896167421 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSS 318 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaPCSg 318 (445) T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~~~FDvV~c------ 130 (243) T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAGGQFDVVTC------ 130 (243) T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCCCEEEE------ T ss_conf 77770887458832864999977994697438767789998754424632-25223329999724897448977------ Q ss_pred CCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 100110110333288667788999999999999986089828999774788 Q gi|254780666|r 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 319 ~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 131 m-------E---------VlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243) T COG2227 131 M-------E---------VLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243) T ss_pred H-------H---------HHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 3-------5---------877169999999999986299928999420138 |
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.1e-07 Score=70.30 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=89.8 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCC-----CEEEEECCCCCCCCC----CC Q ss_conf 56321331003556447000010256841-000105967987765443204887-----417720774457743----44 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLY-----AEDIIEMDAFDYCPK----KL 306 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~-----~~~~~~~D~~~~~~~----~~ 306 (445) T Consensus 80 ~~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~ 159 (275) T TIGR01983 80 LLKDSGLRVLDVGCGGGLLSEPLARLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKS 159 (275) T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 41178977998427857888999755884257752117799999988873340233111145444307887305578415 Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 766896167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 160 FD~V~~----------------------mEvlEHV~dp~~f~~~c~~llkPgG~lF~STI 197 (275) T TIGR01983 160 FDVVTC----------------------MEVLEHVPDPQAFIKACAQLLKPGGILFFSTI 197 (275) T ss_pred CCEEEE----------------------EEEEECCCCHHHHHHHHHHHCCCCCCEEEECC T ss_conf 733764----------------------32000027888999999985089984897300 |
A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process. |
| >pfam03848 TehB Tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.1e-06 Score=63.81 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=86.7 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCC Q ss_conf 56321331003556447000010256841000105967987765443204887417720774457743447668961674 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445) T Consensus 26 ~~~i~pgk~LDlgcG~GRNslyLa~~G~~VtavD~n~~aL~~l~~ia~~e~l~-i~~~~~Din~~~~~e~YD~Ii----- 99 (192) T pfam03848 26 VKTVKPGKALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLD-IPTALYDINSASIDENYDFIL----- 99 (192) T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCEEE----- T ss_conf 86379974666047897318999868991799979999999999999970997-526873155568767768798----- Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 21100110110333288667788999999999999986089828999774 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 100 -sTVvfm-------FL~~~~ip-------~iI~~mq~~T~pGGynlIv~a 134 (192) T pfam03848 100 -STVVLM-------FLQAERIP-------AIIANMQEHTNVGGYNLIVAA 134 (192) T ss_pred -EEEEEE-------ECCHHHHH-------HHHHHHHHHCCCCCEEEEEEE T ss_conf -888777-------31867877-------999999985289988999976 |
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3e-06 Score=66.13 Aligned_cols=105 Identities=23% Similarity=0.298 Sum_probs=87.9 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEE Q ss_conf 2235632133100355644700001025684100010596798776544320488741772077445774-344766896 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLl 312 (445) T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~V 144 (209) T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIV 144 (209) T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEE T ss_conf 99748999986888777830999999997484999997199999999999976987349997885568877798478999 Q ss_pred CCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 313 DaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 145 taaa~~v------P~--------~--------------Ll~QL~~gGrlv~PvG 170 (209) T COG2518 145 TAAAPEV------PE--------A--------------LLDQLKPGGRLVIPVG 170 (209) T ss_pred EECCCCC------CH--------H--------------HHHHCCCCCEEEEEEC T ss_conf 5035779------98--------9--------------9985065988999985 |
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-06 Score=65.04 Aligned_cols=108 Identities=26% Similarity=0.431 Sum_probs=78.5 Q ss_pred CCCC--CCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCC----CCCCCC Q ss_conf 3563--2133100355644700001025684-1000105967987765443204887-417720774457----743447 Q gi|254780666|r 236 LFGT--LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDY----CPKKLF 307 (445) Q Consensus 236 ~l~~--~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~----~~~~~f 307 (445) T Consensus 36 il~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~F 115 (187) T COG0742 36 ILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPF 115 (187) T ss_pred HCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCC T ss_conf 73434457988999468764768999857885699996598999999999998487612599840089998722778851 Q ss_pred CEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCEEEE Q ss_conf 668961674211001101103332886677889999999999-99986089828999 Q gi|254780666|r 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL-QGISFVKPGGIVVF 363 (445) Q Consensus 308 D~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~-~a~~~lk~gG~lvY 363 (445) T Consensus 116 DlVflDPPy~--------------------~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187) T COG0742 116 DLVFLDPPYA--------------------KGLLDKELALLLLEENGWLKPGALIVV 152 (187) T ss_pred CEEEECCCCC--------------------CCHHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 2899689975--------------------360668999988876587788968999 |
|
| >pfam05401 NodS Nodulation protein S (NodS) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=62.01 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=95.5 Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC Q ss_conf 01346321232223563213310035564470000102568410001059679877654432048874177207744577 Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 (445) Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~ 302 (445) T Consensus 25 wYE~~r~~~~l~aaLp~~ry~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla--~~~hV~v~~~~vp~~w 102 (201) T pfam05401 25 PFEQERHTQMLRLSLAQGTIANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMK--KWSHISWIVSDVQQFS 102 (201) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCCEEEECCCCCCC T ss_conf 87899999999986783433002043566248789999987467321362999999999855--7998289825666659 Q ss_pred CCCCCCEEEECCCCCCCCHHHCCCHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 434476689616742110011011033328-86677889999999999999860898289997 Q gi|254780666|r 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445) Q Consensus 303 ~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~-~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445) T Consensus 103 P~~~FDLIV~-------------SEVlYYL~d~a~l-------r~~~~~~v~~LaP~G~Lvfg 145 (201) T pfam05401 103 TNELFDLIVV-------------AEVLYYLGDVAEM-------RGAVRNLVSMLAPDGQLVFG 145 (201) T ss_pred CCCCEEEEEE-------------EHHHHHHCCHHHH-------HHHHHHHHHHHCCCCEEEEE T ss_conf 9888627975-------------1477861879999-------99999999971899659973 |
This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=61.57 Aligned_cols=105 Identities=22% Similarity=0.307 Sum_probs=83.6 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-CCCCC Q ss_conf 22356321331003556447000010---2568410001059679877654432048874-1772077445774-34476 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-KKLFD 308 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-~~~fD 308 (445) T Consensus 65 l~~L~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~apfD 144 (205) T PRK13944 65 CELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFD 144 (205) T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC T ss_conf 99706899998999789851999999998374771799953699999999999985986330679765565774349804 Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 6896167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 145 ~Iiv~aa~~~i------P~--------~--------------l~~QL~~gGrLV~Pvg 174 (205) T PRK13944 145 AIIVTAAASTI------PS--------A--------------LVRQLKDGGVLVIPVE 174 (205) T ss_pred EEEEEEECCCC------CH--------H--------------HHHHCCCCCEEEEEEC T ss_conf 89998507768------99--------9--------------9985487979999987 |
|
| >pfam01596 Methyltransf_3 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.5e-05 Score=60.86 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=86.9 Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC- Q ss_conf 321232223563213310035564470000102---568410001059679877654432048874-177207744577- Q gi|254780666|r 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC- 302 (445) Q Consensus 228 ~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~- 302 (445) T Consensus 31 ~~g~~L~~l~~~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~ 110 (204) T pfam01596 31 EEGQFLSMLVKLVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLE 110 (204) T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHH T ss_conf 99999999999759878999834325999999984899968999980489999999999977987447999874999999 Q ss_pred ------CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf ------4344766896167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 303 ------~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 111 ~l~~~~~~~~fD~vFiDad------------------K~~Y-------~~y~e~~~~lL~~gGiii~DNv 155 (204) T pfam01596 111 QLVEDKPLGEFDFAFVDAD------------------KSSY-------PNYYERLLELVKVGGLIAIDNT 155 (204) T ss_pred HHHHCCCCCCCCEEEEECC------------------HHHH-------HHHHHHHHHHHCCCEEEEEECC T ss_conf 9984477776438998188------------------8777-------9999999986369809999445 |
Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production. |
| >TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.9e-05 Score=60.23 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=85.0 Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCC----CCC-EE-EEECCCCCC---C-CCC-C Q ss_conf 32133100355644700001025684-10001059679877654432048----874-17-720774457---7-434-4 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLH----LYA-ED-IIEMDAFDY---C-PKK-L 306 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g----~~~-~~-~~~~D~~~~---~-~~~-~ 306 (445) T Consensus 53 ~i~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~ 132 (210) T TIGR00095 53 EIVGAHFLDLFAGSGSLGLEALSRGAKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSP 132 (210) T ss_pred HHCCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCC T ss_conf 63687278854064465376640141623787368679999999999988871585300000002566657765179961 Q ss_pred CCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 76689616742110011011033328866778899999999999998608982899 Q gi|254780666|r 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445) Q Consensus 307 fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445) T Consensus 133 ~d~iylDPP--------------f~~~~ad~~~~l~l~~~alerl~~~L~~~~~i~ 174 (210) T TIGR00095 133 FDIIYLDPP--------------FNTGLADLEAILELLGEALERLNKWLNPKGLIV 174 (210) T ss_pred EEEEEECCC--------------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 147871488--------------887610379999999999998731048785799 |
. |
| >pfam03602 Cons_hypoth95 Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Probab=97.85 E-value=1e-05 Score=62.20 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=75.3 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCCCCEEEECC Q ss_conf 2133100355644700001025684-1000105967987765443204887417720774457----7434476689616 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----CPKKLFDAVLVDA 314 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----~~~~~fD~iLlDa 314 (445) T Consensus 42 i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~DP 121 (181) T pfam03602 42 LGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLDP 121 (181) T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECCC T ss_conf 48987998278726989999976998899996999999999999998589977998108999987533578887663599 Q ss_pred CCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 742110011011033328866778899999999999998608982899977 Q gi|254780666|r 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 315 PCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 122 PY~~----------------~~~---~~~l~~l~~--~~~l~~~~iiiiE~ 151 (181) T pfam03602 122 PYAK----------------GLI---EEALELLAE--KGWLNPNALIVVET 151 (181) T ss_pred CCCC----------------HHH---HHHHHHHHH--CCCCCCCEEEEEEE T ss_conf 7542----------------069---999999996--66657980999996 |
|
| >pfam08241 Methyltransf_11 Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.7e-05 Score=59.07 Aligned_cols=92 Identities=29% Similarity=0.323 Sum_probs=69.9 Q ss_pred ECCCCCCCCCEEEECCC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCCCCCHHH Q ss_conf 03556447000010256-84100010596798776544320488741772077445774-34476689616742110011 Q gi|254780666|r 246 LDLCAAPGGKTAQLIVS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIR 323 (445) Q Consensus 246 LD~CAAPGGKT~~l~~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~Gt~r 323 (445) T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~~---~~~~~~~d~~~~~~~~~~fD~I~~------~~~l~ 71 (95) T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQED---GLTFVVGDAEDLPFPDESFDVVVS------SLVLH 71 (95) T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCC---CCEEEEECCCCCCCCCCCCCEEEE------CCCHH T ss_conf 964624999999998457999999949789987766310266---947998033246755456859998------33066 Q ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 011033328866778899999999999998608982899 Q gi|254780666|r 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445) Q Consensus 324 r~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445) T Consensus 72 ~~~---------~-------~~~~l~~~~r~LkpgG~l~ 94 (95) T pfam08241 72 HLP---------D-------PERALREIARVLKPGGKLV 94 (95) T ss_pred HCC---------C-------HHHHHHHHHHHCCCCEEEE T ss_conf 468---------9-------9999999998778694997 |
Members of this family are SAM dependent methyltransferases. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.2e-05 Score=58.47 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=89.1 Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEE-CCCCCC Q ss_conf 6321232223563213310035564470000102---568410001059679877654432048874-17720-774457 Q gi|254780666|r 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIE-MDAFDY 301 (445) Q Consensus 227 D~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~-~D~~~~ 301 (445) T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219) T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219) T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH T ss_conf 14899999999734986499963523799999996388897699970798999999999997597652898835747999 Q ss_pred CC---CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 74---344766896167421100110110333288667788999999999999986089828999774788 Q gi|254780666|r 302 CP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 302 ~~---~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 125 l~~~~~~~fDliFIDad------------------K~-------~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219) T COG4122 125 LSRLLDGSFDLVFIDAD------------------KA-------DYPEYLERALPLLRPGGLIVADNVLFG 170 (219) T ss_pred HHHCCCCCCCEEEEECC------------------HH-------HCHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 97334788568998378------------------43-------599999999997378968998303567 |
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.6e-05 Score=60.63 Aligned_cols=108 Identities=27% Similarity=0.289 Sum_probs=81.3 Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCCEEEECCCCC Q ss_conf 321331003556447000010256841000105967987765443204887-4177207744577434476689616742 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~-~~~~~~~D~~~~~~~~~fD~iLlDaPCS 317 (445) T Consensus 61 dl~G~rVLDaGCGtG~la~~LA~~Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~--~~G~FD~Vv~----- 133 (230) T PRK07580 61 DLTGLSILDAGCGTGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLES--LLGSFDTVVC----- 133 (230) T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCCCCCHHH----- T ss_conf 978998988187867879999977998999838999999999755862787675389667654--5798660233----- Q ss_pred CCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH Q ss_conf 11001101103332886677889999999999999860898289997747883 Q gi|254780666|r 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445) Q Consensus 318 g~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445) T Consensus 134 --------mdvLiHYp~~d~~-------~~l~~la~~~~--~~~ifTfAP~T~ 169 (230) T PRK07580 134 --------LDVLIHYPQEDAE-------RMLAHLASLTR--GSLIFTFAPYTP 169 (230) T ss_pred --------CCCEEECCHHHHH-------HHHHHHHHCCC--CEEEEEECCCCH T ss_conf --------3715545788999-------99999972558--859999689869 |
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.6e-05 Score=58.08 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=75.7 Q ss_pred CCCCCCCEECCCCCCCCCEEEEC-CC-CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEEC Q ss_conf 63213310035564470000102-56-84100010596798776544320488741772077445774--3447668961 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLI-VS-GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVD 313 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~-~~-~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlD 313 (445) T Consensus 48 ~~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~IDlD 127 (376) T PRK04338 48 GPKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVDID 127 (376) T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEC T ss_conf 42069768740676549999998727998799956999999999999998299826981324899998378758778678 Q ss_pred CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH Q ss_conf 674211001101103332886677889999999999999860898289997747883 Q gi|254780666|r 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445) Q Consensus 314 aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445) T Consensus 128 PfGSp~--------------------------pflDsAi~~v~~~G-lL~vTaTD~a 157 (376) T PRK04338 128 PFGSPA--------------------------PFLDSAIRALRRGG-LLCVTATDTA 157 (376) T ss_pred CCCCCC--------------------------HHHHHHHHHHHCCC-EEEEEECCCC T ss_conf 999920--------------------------87999999840398-8999946861 |
|
| >pfam08242 Methyltransf_12 Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.5e-05 Score=60.97 Aligned_cols=94 Identities=27% Similarity=0.402 Sum_probs=68.8 Q ss_pred ECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCCCCEEEECCCCCCCCH Q ss_conf 03556447000010256--841000105967987765443204887417720774457--74344766896167421100 Q gi|254780666|r 246 LDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGT 321 (445) Q Consensus 246 LD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~--~~~~~fD~iLlDaPCSg~Gt 321 (445) T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~------~~v 74 (98) T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVA------SNV 74 (98) T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEE------CCC T ss_conf 98863379999999987899889998598899999999998713453111000000022203589889961------041 Q ss_pred HHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 1101103332886677889999999999999860898289 Q gi|254780666|r 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 (445) Q Consensus 322 ~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~l 361 (445) T Consensus 75 l~~~~~----------------~~~~l~~~~r~LkpgG~l 98 (98) T pfam08242 75 LHHLAD----------------PRAVLRNLRRLLKPGGVL 98 (98) T ss_pred HHHCCC----------------HHHHHHHHHHHCCCCCCC T ss_conf 772589----------------999999999974999899 |
Members of this family are SAM dependent methyltransferases. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively | Back alignment and domain information |
|---|
Probab=97.51 E-value=6.8e-05 Score=56.03 Aligned_cols=105 Identities=29% Similarity=0.265 Sum_probs=86.4 Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CC-EEEEECCCCCCCCCCCCCEEEECCCC Q ss_conf 32133100355644700001025684100010596798776544320488-74-17720774457743447668961674 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YA-EDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~-~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445) T Consensus 52 ~l~G~~vlDAGCGtGllsi~LAk~GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~-~~G~fD~VV~---- 126 (224) T TIGR02021 52 SLKGKKVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESL-ELGKFDAVVA---- 126 (224) T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH-CCCCCCEEEE---- T ss_conf 98767777558893154498884798686623768999999862100210167003545304441-3898555675---- Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 211001101103332886677889999999999999860898289997 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445) T Consensus 127 ---------mDvlIHYp~~d~~-------~~l~~Laslt~~~~~ftfA 158 (224) T TIGR02021 127 ---------MDVLIHYPAEDIA-------KALEHLASLTKERVIFTFA 158 (224) T ss_pred ---------EHHHHHCCHHHHH-------HHHHHHHHHHCCCEEEEEC T ss_conf ---------2122320222279-------9999988743586489867 |
They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. |
| >KOG1270 consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=51.02 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=77.9 Q ss_pred CCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC------EEEEECCCCCCCCCCCCCEEE Q ss_conf 63213310035564470000102568410001059679877654432048874------177207744577434476689 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVL 311 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~------~~~~~~D~~~~~~~~~fD~iL 311 (445) T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVv 163 (282) T KOG1270 86 KPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVV 163 (282) T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHC--CCCCCEEE T ss_conf 4557864787236755023235750885685265599999998751049033056414630201533214--56564544 Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 6167421100110110333288667788999999999999986089828999774 Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 (445) Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 366 (445) T Consensus 164 c----s------------------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282) T KOG1270 164 C----S------------------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282) T ss_pred E----H------------------HHHHHHHCHHHHHHHHHHHHCCCCCEEEEEH T ss_conf 1----9------------------8999874789999999998488982586411 |
|
| >KOG1271 consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00023 Score=52.13 Aligned_cols=120 Identities=27% Similarity=0.298 Sum_probs=89.9 Q ss_pred CEECCCCCCCCCEEEECCC--CCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-CCCCCEEEECCCCCCC Q ss_conf 1003556447000010256--8410001059679877654432048874-1772077445774-3447668961674211 Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 (445) Q Consensus 244 ~VLD~CAAPGGKT~~l~~~--~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~ 319 (445) T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD------K 143 (227) T KOG1271 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD------K 143 (227) T ss_pred CEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEE------C T ss_conf 1166157961889998871388886453157889999987887527885316887322577555543238960------5 Q ss_pred CHH---HCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHH Q ss_conf 001---1011033328866778899999999999998608982899977478834399989999 Q gi|254780666|r 320 GTI---RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 (445) Q Consensus 320 Gt~---rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~f 380 (445) T Consensus 144 GT~DAisLs~d~~~~-------r~----~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227) T KOG1271 144 GTLDAISLSPDGPVG-------RL----VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227) T ss_pred CCEEEEECCCCCCCC-------CE----EEEHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCC T ss_conf 741225507777665-------43----443556863038896799985576589999997259 |
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00085 Score=47.88 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=77.2 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCCCCEE Q ss_conf 5632133100355644700001025--684100010596798776544320488741772077445774----3447668 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAV 310 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~----~~~fD~i 310 (445) T Consensus 68 ~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R--~NivPIl~DAr~P~~Y~~~v~~VD~i 145 (226) T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER--KNIIPILGDARKPEEYAHLVEKVDVI 145 (226) T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHCCCCCEE T ss_conf 6758998799954777984888987517964999982707789999998508--99625754678845644205656589 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEE Q ss_conf 961674211001101103332886677889999999999999-86089828999 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI-SFVKPGGIVVF 363 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~-~~lk~gG~lvY 363 (445) T Consensus 146 ~qDvA---------Q~----------------dQa~I~~~Na~~FLk~gG~~~l 174 (226) T PRK04266 146 YQDVA---------QP----------------NQAEIAADNADIFLKPGGYLML 174 (226) T ss_pred EEECC---------CH----------------HHHHHHHHHHHHHHHCCCEEEE T ss_conf 96067---------74----------------2899999999986015988999 |
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00021 Score=52.37 Aligned_cols=105 Identities=22% Similarity=0.256 Sum_probs=82.1 Q ss_pred CCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCC Q ss_conf 56321331003556447000010256841000105967987765443204887417720774457743447668961674 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445) T Consensus 118 ~~~i~pgkaLDLGCG~GRNsLyLa~~GfdVTA~D~N~~sl~~L~~ia~~E~L-~i~~~~yDIN~a~l~~~YDfI~S---- 192 (289) T PRK12335 118 AKTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQASLENLQQIAEKENL-NIRAGSYDINSASLQEEYDFILS---- 192 (289) T ss_pred HHHCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC-CCCCEEECCCCCCCCCCCCEEEE---- T ss_conf 7526887466604788822788975798425886899999999999997198-87725751666666777678999---- Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 2110011011033328866778899999999999998608982899 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445) T Consensus 193 --TVV~m-------FL~~~~ip-------~iI~nMQ~~T~~gGyNl 222 (289) T PRK12335 193 --TVVLM-------FLNPERIP-------DIIKNMQEHTNPGGYNL 222 (289) T ss_pred --EEEEE-------EECHHHHH-------HHHHHHHHHCCCCCEEE T ss_conf --67886-------42877869-------99999998447998689 |
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00057 Score=49.17 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=90.2 Q ss_pred CCEECCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCCCCEEEECCCC Q ss_conf 310035564470000102568--41000105967987765443204887417720774457----743447668961674 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY----CPKKLFDAVLVDAPC 316 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~----~~~~~fD~iLlDaPC 316 (445) T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227) T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227) T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEECCC T ss_conf 66999688898789999987898778999973489999999999829984699807799999735898856579997999 Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 211001101103332886677889999999999999860898289997747 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 130 ------------PWpKkRH~KRR--l~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227) T COG0220 130 ------------PWPKKRHHKRR--LTQPEFLKLYARKLKPGGVLHFATDN 166 (227) T ss_pred ------------CCCCCCCCCCC--CCCHHHHHHHHHHCCCCCEEEEEECC T ss_conf ------------99876643321--47889999999972689789997267 |
|
| >pfam03291 Pox_MCEL mRNA capping enzyme | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0044 Score=42.60 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=65.2 Q ss_pred CCCCCEECCCCCCCCCEEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC Q ss_conf 2133100355644700001025-684100010596798776544320488741772077445774344766896167421 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg 318 (445) T Consensus 62 ~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~--------~~~~~~~~f~~~f~~~D~~~ 133 (327) T pfam03291 62 KPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRS--------KSKYYKFDFIAEFITGDCFV 133 (327) T ss_pred CCCCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCC--------CCCCCCCCCCEEEEECCCCH T ss_conf 8898799836866445788974798689996689999999999999864211--------44445667500123156215 Q ss_pred CCHHHCCCH--HHHCCCH--HHHHH---HHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 100110110--3332886--67788---99999999999998608982899977 Q gi|254780666|r 319 TGTIRRHPD--VLWTRDT--DDIVK---SACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 319 ~Gt~rr~Pd--~~w~~~~--~~l~~---l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 134 ~~l~~~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIGT~ 187 (327) T pfam03291 134 SSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIGTT 187 (327) T ss_pred HHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 678775357788503775178789876489999999999998605898899996 |
This family of enzymes are related to pfam03919. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00099 Score=47.42 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=78.6 Q ss_pred CCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCH Q ss_conf 33100355644700001025684100010596798776544320488741772077445774344766896167421100 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt 321 (445) T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm------- 104 (252) T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM------- 104 (252) T ss_pred HHCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-CCCCEEHHHH------- T ss_conf 41056346886328898875320278874180787776505777887646898055321332-3453408777------- Q ss_pred HHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 11011033328866778899999999999998608982899 Q gi|254780666|r 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445) Q Consensus 322 ~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445) T Consensus 105 -------------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252) T COG4076 105 -------------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252) T ss_pred -------------HHHHHHCCCCCHHHHHHHHHHHCCCCCC T ss_conf -------------6677633421289999999863388252 |
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0024 Score=44.59 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=91.2 Q ss_pred CCCEECCCC-CCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC Q ss_conf 010134632-1232223563213310035564470000102568410001059679877654432048874177207744 Q gi|254780666|r 221 GVWWVQDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 (445) Q Consensus 221 G~~~VQD~a-Sql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~ 299 (445) T Consensus 9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaL 86 (259) T COG0030 9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDAL 86 (259) T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHH T ss_conf 64541478799999985578999869997898778899999606957999968899999997506--5665599947242 Q ss_pred CCCCCC--CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 577434--47668961674211001101103332886677-8899999999999998608982899977478 Q gi|254780666|r 300 DYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 (445) Q Consensus 300 ~~~~~~--~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi 368 (445) T Consensus 87 k~d~~~l~~~~~vVaNlPY~Isspii~----kll~~~~~~~~~v~M~QkEvaeRl---~A~pgsk~Yg~LsV 151 (259) T COG0030 87 KFDFPSLAQPYKVVANLPYNISSPILF----KLLEEKFIIQDMVLMVQKEVAERL---VAKPGSKDYGRLSV 151 (259) T ss_pred CCCCHHHCCCCEEEECCCCCCCHHHHH----HHHHCCCCCCEEEEEEHHHHHHHH---HCCCCCCCCCHHHH T ss_conf 475135157888998089765679999----998466765428998299999997---17889865206655 |
|
| >pfam01861 DUF43 Protein of unknown function DUF43 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0076 Score=40.85 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=76.2 Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCCH---HHC------CCHHH-- Q ss_conf 41000105967987765443204887417720774457743---44766896167421100---110------11033-- Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGT---IRR------HPDVL-- 329 (445) Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~Gt---~rr------~Pd~~-- 329 (445) T Consensus 68 ~~I~VvDIDeRll~fI~~~A~~~gl-~i~~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~G~~LFlsRgi~~Lk~eg~agY 146 (243) T pfam01861 68 KRIAVVDIDERLIKFIERVAKEEGL-KIEAFVHDLRNPLPEDLKHKFDVFITDPPETVDGLKAFLGRGIATLKGEGCAGY 146 (243) T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCE T ss_conf 5489996758999999999997499-716887410148999996167989718998778999999999998266885226 Q ss_pred --HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCHHHCHHHHHHHHH Q ss_conf --3288667788999999999999986089828999-7747883439998999999 Q gi|254780666|r 330 --WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF-SNCSLDKQDSEEVVQKVLR 382 (445) Q Consensus 330 --w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY-sTCSi~~eEne~vV~~fL~ 382 (445) T Consensus 147 fglt~~esS~~kw~~~Qk~l~~~g--~v------Itdii~~Fn~Y~~~~~~~~t~~ 194 (243) T pfam01861 147 FGITHRESSLDKWREIQRMLIEMG--VV------ITDLIRNFNVYENWGYIEETRA 194 (243) T ss_pred EEEECCCCHHHHHHHHHHHHHHCC--EE------HHHHHHHHHCCCCCCHHHHHHH T ss_conf 876426014999999999999859--20------9998766630567312332145 |
This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long. |
| >pfam05219 DREV DREV methyltransferase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0059 Score=41.63 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=66.6 Q ss_pred CCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCCCC Q ss_conf 133100355644700001025684100010596798776544320488741772077445774-3447668961674211 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~ 319 (445) T Consensus 94 ~~~~LLDlGAGdG~VT~~la~~F~~V~aTE~S~~----Mr~rL~~rgf~vl~---~~--~~~~~~~~fDvIsc------L 158 (265) T pfam05219 94 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWT----MRDRLKKKNYNVLT---EI--EWQETDVNLDLILC------L 158 (265) T ss_pred CCCEEEEECCCCCHHHHHHHHHHCEEEEEECCHH----HHHHHHHCCCEEEE---EH--HCCCCCCCEEEEHH------H T ss_conf 7664788358997899999975235888727899----99999975986875---01--20356874455422------2 Q ss_pred CHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 0011011033328866778899999999999998608982899977 Q gi|254780666|r 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 320 Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 159 NvLDRc----------------~~P~~LL~~i~~~L~P~G~lilAv 188 (265) T pfam05219 159 NLLDRC----------------FDPFKLLEDIHLALAPNGRVIVAL 188 (265) T ss_pred HHHHCC----------------CCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 445313----------------886999999997249996799999 |
This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs). |
| >KOG1663 consensus | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0042 Score=42.73 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=85.1 Q ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEE---ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCC Q ss_conf 013463212322235632133100355644700001---02568410001059679877654432048874-17720774 Q gi|254780666|r 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA 298 (445) Q Consensus 223 ~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~---l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~ 298 (445) T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237) T KOG1663 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237) T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCH T ss_conf 42376887999999998587338998121278999999745999659999618688887599998606330342342525 Q ss_pred CCCC-------CCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 4577-------434476689616742110011011033328866778899999999999998608982899977 Q gi|254780666|r 299 FDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 299 ~~~~-------~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDad---------------K------~nY~----~y~e~~l~Llr~GGvi~~DN 183 (237) T KOG1663 135 LESLDELLADGESGTFDFAFVDAD---------------K------DNYS----NYYERLLRLLRVGGVIVVDN 183 (237) T ss_pred HHHHHHHHHCCCCCCEEEEEECCC---------------H------HHHH----HHHHHHHHHCCCCCEEEEEC T ss_conf 666999985579984259997366---------------6------7789----99999985621353899922 |
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.031 Score=36.27 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=79.1 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCC--CHHHHHCCHHHHHHHHHHHHCCC---CCC--EEEEECCCCCCCC--CCCCCEE Q ss_conf 2133100355644700001025684--10001059679877654432048---874--1772077445774--3447668 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLH---LYA--EDIIEMDAFDYCP--KKLFDAV 310 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~--~i~A~D~~~~Rl~~l~~~~~R~g---~~~--~~~~~~D~~~~~~--~~~fD~i 310 (445) T Consensus 77 ~~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yDvI 156 (283) T PRK00811 77 PNPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFDVI 156 (283) T ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCEE T ss_conf 99774899568747999998427885679999468999999999838863133029715998278999998452355489 Q ss_pred EECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 9616742110011011033328866778899999999999998608982899977478 Q gi|254780666|r 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 (445) Q Consensus 311 LlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi 368 (445) T Consensus 157 I~D~t---------DP~g-----pa~--~--Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp 196 (283) T PRK00811 157 IVDST---------DPVG-----PAE--G--LFTKEFYENCKRALKEGGIFVAQSESP 196 (283) T ss_pred EEECC---------CCCC-----HHH--H--HCCHHHHHHHHHHCCCCCEEEECCCCH T ss_conf 98089---------9886-----445--5--345999999998539995899927983 |
|
| >pfam00398 RrnaAD Ribosomal RNA adenine dimethylase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0061 Score=41.57 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=80.0 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434-476689 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445) T Consensus 22 Iv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~--~~~~~~ii~~D~l~~d~~~~~~~~vv 99 (258) T pfam00398 22 IVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA--LHPNVEVVHQDFLKFSFPKHEPFLVV 99 (258) T ss_pred HHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCEEEE T ss_conf 9997089999979997996239999999616947999544779999998644--28977999663010575457861689 Q ss_pred ECCCCCCCCH-HHCCCHHHHCCCHH-HH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH Q ss_conf 6167421100-11011033328866-77-889999999999999860898289997747883 Q gi|254780666|r 312 VDAPCSSTGT-IRRHPDVLWTRDTD-DI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 (445) Q Consensus 312 lDaPCSg~Gt-~rr~Pd~~w~~~~~-~l-~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~ 370 (445) T Consensus 100 gNLPY~Iss~il~~-----ll~~~~~~~~~~vlmvQkEvA~R---l~a~pg~k~y~~LSv~~ 153 (258) T pfam00398 100 GNIPYNITTPIVKK-----LLFEPRFGRVKMLLVVQKEFARR---LLARPGSKIYSRLTVLT 153 (258) T ss_pred ECCCCCCCHHHHHH-----HHHCCCCCCCEEEEEEEHHHHHH---HHCCCCCCCCCHHHHHH T ss_conf 44886341789999-----99704767204899988999999---85589986513689999 |
|
| >KOG2361 consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0081 Score=40.64 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=80.5 Q ss_pred HCHHHHHCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECC----CCCCHHHHHCCHHHHHHHHHHHHCCCCC Q ss_conf 585011001013463212322235632133100355644700001025----6841000105967987765443204887 Q gi|254780666|r 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 (445) Q Consensus 214 ~~~~f~eG~~~VQD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~~l~~----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~ 289 (445) T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~---~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~ 122 (264) T KOG2361 47 ENRFFKDRNWLLREFPELLPVDE---KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-S 122 (264) T ss_pred CCCCCCHHHHHHHHHHHHHCCCC---CCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCH-H T ss_conf 45453116778775677507555---5734511222477751224442489987389974898689999873633264-5 Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 417720774457743447668961674211001101103332886677889999999999999860898289997 Q gi|254780666|r 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 (445) Q Consensus 290 ~~~~~~~D~~~~~~~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYs 364 (445) T Consensus 123 ~~~afv~Dlt~~~--------~~~~~~~~svD~it---~IFvLSA--i--~pek~~~a~~nl~~llKPGG~llfr 182 (264) T KOG2361 123 RVEAFVWDLTSPS--------LKEPPEEGSVDIIT---LIFVLSA--I--HPEKMQSVIKNLRTLLKPGGSLLFR 182 (264) T ss_pred HHCCCCEECCCHH--------CCCCCCCCCCCEEE---EEEEEEC--C--CHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 5012000165601--------03788867633478---9998751--4--8477899999999974888679984 |
|
| >KOG4300 consensus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.056 Score=34.42 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=76.6 Q ss_pred CCCCCCCCEECCCCCCCCCEEE-ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEE-EEECCCCCCC--CCCCCCEEEE Q ss_conf 5632133100355644700001-0256841000105967987765443204887417-7207744577--4344766896 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYC--PKKLFDAVLV 312 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~~-l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~-~~~~D~~~~~--~~~~fD~iLl 312 (445) T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252) T KOG4300 72 LGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVC 151 (252) T ss_pred HCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCEEEEEE T ss_conf 34357513699614688885355578885689867848799999988864257205777850521074213677115777 Q ss_pred C-CCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 1-6742110011011033328866778899999999999998608982899977 Q gi|254780666|r 313 D-APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 313 D-aPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 152 TlvLCSv-----------------------e~~~k~L~e~~rlLRpgG~iifiE 182 (252) T KOG4300 152 TLVLCSV-----------------------EDPVKQLNEVRRLLRPGGRIIFIE 182 (252) T ss_pred EEEEECC-----------------------CCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 8887205-----------------------779999999887508895899972 |
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.0075 Score=40.90 Aligned_cols=102 Identities=19% Similarity=0.324 Sum_probs=80.6 Q ss_pred CCCCCEECCCCCCCCCEEEEC-------CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--C-CCCCE Q ss_conf 213310035564470000102-------5684100010596798776544320488741772077445774--3-44766 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--K-KLFDA 309 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~-------~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~-~~fD~ 309 (445) T Consensus 236 ~~~~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeL 315 (386) T TIGR02085 236 LPVKQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPEL 315 (386) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 57110320104654127899898764158970443134377899999999987353321045445799998623688965 Q ss_pred EEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 8961674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 310 iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 316 VlVNPPRRGiG~-----------------e--------L~~~L~~~aP~-fILYSSCN 347 (386) T TIGR02085 316 VLVNPPRRGIGK-----------------E--------LCDYLSQLAPK-FILYSSCN 347 (386) T ss_pred EEECCCCCCCCH-----------------H--------HHHHHHHCCCC-EEEECCCC T ss_conf 776788888760-----------------6--------89999750886-26621677 |
Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.063 Score=34.00 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=63.3 Q ss_pred CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CCCCEEEECCCCCCCC----------HHHCCCH--- Q ss_conf 41000105967987765443204887417720774457743---4476689616742110----------0110110--- Q gi|254780666|r 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTG----------TIRRHPD--- 327 (445) Q Consensus 264 ~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~---~~fD~iLlDaPCSg~G----------t~rr~Pd--- 327 (445) T Consensus 176 k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGy 255 (354) T COG1568 176 KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGY 255 (354) T ss_pred CEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCE T ss_conf 33799831589999999999984833155403051045839888507764359633579999998511887358874536 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 33328866778899999999999 Q gi|254780666|r 328 VLWTRDTDDIVKSACFQRKLLLQ 350 (445) Q Consensus 328 ~~w~~~~~~l~~l~~~Q~~iL~~ 350 (445) T Consensus 256 fgiT~ressidkW~eiQr~lIn~ 278 (354) T COG1568 256 FGITRRESSIDKWREIQRILINE 278 (354) T ss_pred EEEEECCCCHHHHHHHHHHHHHH T ss_conf 86641426288999999999874 |
|
| >KOG1661 consensus | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.22 Score=29.93 Aligned_cols=99 Identities=24% Similarity=0.240 Sum_probs=68.9 Q ss_pred CCCCCCEECCCCCCCCCEEE----ECCCCCCHHHHHCCHHHHHHHHHHHHCC----------CCCCEEEEECCCCCCCC- Q ss_conf 32133100355644700001----0256841000105967987765443204----------88741772077445774- Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCNLDRL----------HLYAEDIIEMDAFDYCP- 303 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~----l~~~~~~i~A~D~~~~Rl~~l~~~~~R~----------g~~~~~~~~~D~~~~~~- 303 (445) T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237) T KOG1661 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237) T ss_pred HCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCC T ss_conf 23473101337874089999999945777665144415999999998777650473045564148647996776234775 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 34476689616742110011011033328866778899999999999998608982899977 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 365 (445) T Consensus 160 ~a~YDaIhvGAaa~~----------------------------~pq~l~dqL~~gGrllip~ 193 (237) T KOG1661 160 QAPYDAIHVGAAASE----------------------------LPQELLDQLKPGGRLLIPV 193 (237) T ss_pred CCCCCEEEECCCCCC----------------------------CHHHHHHHHCCCCEEEEEE T ss_conf 687665787667622----------------------------4799998634387289861 |
|
| >pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.76 Score=26.01 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=73.6 Q ss_pred CCEECCCCCCCCCEEEE-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCCCCCCC Q ss_conf 31003556447000010-256841000105967987765443204887417720774457743-4476689616742110 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTG 320 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~G 320 (445) T Consensus 57 ~~alDcGAGIGRVTk~lL~~~f~~VDlVEpv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P~~~~YD~IW--------- 127 (217) T pfam05891 57 LVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTPEEGRYDLIW--------- 127 (217) T ss_pred CEEEECCCCCCEECHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEE--------- T ss_conf 26654267636112667887548135754449999999998740379765389736101689998176998--------- Q ss_pred HHHCCCHHHH---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 0110110333---288667788999999999999986089828999 Q gi|254780666|r 321 TIRRHPDVLW---TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 (445) Q Consensus 321 t~rr~Pd~~w---~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvY 363 (445) T Consensus 128 -------~QW~~ghLtD~dlv-------~Fl~RCk~~L~~~G~Ivv 159 (217) T pfam05891 128 -------IQWCIGHLTDEDLV-------AFLKRCKSGLKPNGIIVI 159 (217) T ss_pred -------EHHHHCCCCHHHHH-------HHHHHHHHHCCCCCEEEE T ss_conf -------05845218889999-------999999984789864998 |
This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base]. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.53 Score=27.18 Aligned_cols=108 Identities=23% Similarity=0.263 Sum_probs=77.7 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCC---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------CCC Q ss_conf 2356321331003556447000010256---8410001059679877654432048874177207744577------434 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKK 305 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~~~ 305 (445) T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq 116 (194) T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQ 116 (194) T ss_pred HCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC-----CCCCCCCCCHHHHHHHHHHCCCC T ss_conf 4348445976477769866768999965799543689982779999999758-----87513054056578778652797 Q ss_pred CCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 47668961674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 306 ~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 117 ~~D~viS~lPll~~------P-------~-------~~~iaile~~~~rl~~gg~lvqftYg 158 (194) T COG3963 117 FFDSVISGLPLLNF------P-------M-------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194) T ss_pred EEEEEEECCCCCCC------C-------H-------HHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 40168865600248------6-------7-------78999999999856899727999846 |
|
| >pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.67 Score=26.42 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=65.7 Q ss_pred CEECCCCCCCCCE------EEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCEEEECCCC Q ss_conf 1003556447000------01025684100010596798776544320488-7417720774457743447668961674 Q gi|254780666|r 244 SVLDLCAAPGGKT------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 (445) Q Consensus 244 ~VLD~CAAPGGKT------~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~~~~fD~iLlDaPC 316 (445) T Consensus 189 vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p~k~Di~VSE--- 265 (447) T pfam05185 189 VILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGPEKADILVSE--- 265 (447) T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCEEEEE--- T ss_conf 99998589648999999999981996699999568779999999850543178069990800057998773589752--- Q ss_pred CCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 2110011011033328866778899999999999998608982899 Q gi|254780666|r 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 (445) Q Consensus 317 Sg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lv 362 (445) T Consensus 266 -LLGSFGDN-----ELSPE-----------CLdg~q~~lk~~gIsI 294 (447) T pfam05185 266 -LLGSFGDN-----ELSPE-----------CLDGAQRFLKPDGISI 294 (447) T ss_pred -CCCCCCCC-----CCCHH-----------HHHHHHHHCCCCCEEE T ss_conf -11666665-----57977-----------8778997468984682 |
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.28 Score=29.24 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=61.4 Q ss_pred CCCCCCCCEECCCCCCCCCEE-EECC-CC-CCHHHHHCCHHHHHHHHHHHHCCCCCCE-EEEECCCCCCC-CCCCCCEEE Q ss_conf 563213310035564470000-1025-68-4100010596798776544320488741-77207744577-434476689 Q gi|254780666|r 237 FGTLNNLSVLDLCAAPGGKTA-QLIV-SG-AKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYC-PKKLFDAVL 311 (445) Q Consensus 237 l~~~~g~~VLD~CAAPGGKT~-~l~~-~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~-~~~~~D~~~~~-~~~~fD~iL 311 (445) T Consensus 165 ~~~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a----~~~Ga~~~i~~~~~~~~~~~~~~g~~Dvvi 240 (343) T PRK09880 165 AGDLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLA----RQMGADVLVNPQNDDMDHWKAEKGYFDVSF 240 (343) T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH----HHCCCCEEECCCCCCHHHHHHHCCCCCEEE T ss_conf 4775698899984776799999999986998799997978999999----972997998798743999996369977899 Q ss_pred ECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 61674211001101103332886677889999999999999860898289997747 Q gi|254780666|r 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 (445) Q Consensus 312 lDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCS 367 (445) T Consensus 241 -e--~~G~~-------------------------~~~~~al~~~r~gG~iv~vG~~ 268 (343) T PRK09880 241 -E--VSGHP-------------------------SSVNTCLEVTRAKGVMVQVGMG 268 (343) T ss_pred -E--ECCCH-------------------------HHHHHHHHHCCCCEEEEEEECC T ss_conf -9--21999-------------------------9999999737798399999727 |
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-08 Score=79.86 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=76.4 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCCEE Q ss_conf 2356321331003556447000010256841000105967987765443204887417720774457743----447668 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFDAV 310 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD~i 310 (445) T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432) T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432) T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEE T ss_conf 99743699779993558870135531246579999648999999999999739887799958688886510025799989 Q ss_pred EECCCCCCCC Q ss_conf 9616742110 Q gi|254780666|r 311 LVDAPCSSTG 320 (445) Q Consensus 311 LlDaPCSg~G 320 (445) T Consensus 367 vvDPPR~G~~ 376 (432) T COG2265 367 VVDPPRAGAD 376 (432) T ss_pred EECCCCCCCC T ss_conf 9899999999 |
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-08 Score=78.10 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=70.5 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------ Q ss_conf 23563213310035564470000102568410001059679877654432048874177207744577------------ Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------ 302 (445) T Consensus 202 ~~~~~~~~-~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~~~~~~~~~~~l 280 (363) T PRK05031 202 DATKGSKG-DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFRRL 280 (363) T ss_pred HHHHCCCC-CEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHCC T ss_conf 97613898-28986058664269988626879999538999999999999869986499965899999987343101001 Q ss_pred -----CCCCCCEEEECCCCCCCC Q ss_conf -----434476689616742110 Q gi|254780666|r 303 -----PKKLFDAVLVDAPCSSTG 320 (445) Q Consensus 303 -----~~~~fD~iLlDaPCSg~G 320 (445) T Consensus 281 ~~~~~~~~~~d~vvvDPPR~Gl~ 303 (363) T PRK05031 281 KGIDLKSYNFSTIFVDPPRAGLD 303 (363) T ss_pred CCCCCCCCCCCEEEECCCCCCCC T ss_conf 24664435586489899988874 |
|
| >PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=74.51 Aligned_cols=85 Identities=26% Similarity=0.284 Sum_probs=74.4 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-----CCCCCC Q ss_conf 223563213310035564470000102568410001059679877654432048874177207744577-----434476 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFD 308 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~-----~~~~fD 308 (445) T Consensus 287 ~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D 366 (440) T PRK13168 287 LEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFD 366 (440) T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC T ss_conf 99852678988998623856211113530676887605799999999999974999878997464566355786379999 Q ss_pred EEEECCCCCC Q ss_conf 6896167421 Q gi|254780666|r 309 AVLVDAPCSS 318 (445) Q Consensus 309 ~iLlDaPCSg 318 (445) T Consensus 367 ~vi~DPPR~G 376 (440) T PRK13168 367 KVLLDPPRAG 376 (440) T ss_pred EEEECCCCCC T ss_conf 8999988527 |
|
| >pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-07 Score=74.90 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=70.2 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------------ Q ss_conf 23563213310035564470000102568410001059679877654432048874177207744577------------ Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------------ 302 (445) T Consensus 192 ~~~~~~~~~-vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~~~~~~~~~~~~~~ 270 (353) T pfam05958 192 EVTQGSKGD-LLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRL 270 (353) T ss_pred HHHHCCCCC-EEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHHC T ss_conf 986268995-8998468888889998647879999625999999999899869986499972899999987524223320 Q ss_pred -----CCCCCCEEEECCCCCCCC Q ss_conf -----434476689616742110 Q gi|254780666|r 303 -----PKKLFDAVLVDAPCSSTG 320 (445) Q Consensus 303 -----~~~~fD~iLlDaPCSg~G 320 (445) T Consensus 271 ~~i~~~~~~~d~vvlDPPR~G~~ 293 (353) T pfam05958 271 KGIDLKSYNCSTIFVDPPRAGLD 293 (353) T ss_pred CCCCCCCCCCCCEEECCCCCCCH T ss_conf 36663224677258489877773 |
This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.2e-07 Score=72.39 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=70.7 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEE Q ss_conf 23563213310035564470000102---5684100010596798776544320488741772077445774-3447668 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~i 310 (445) T Consensus 69 ElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~APYD~I 148 (317) T PRK13943 69 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVI 148 (317) T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEE T ss_conf 97178999868996577438999999984878759999867999999999999779986499979988888667997789 Q ss_pred EECCC Q ss_conf 96167 Q gi|254780666|r 311 LVDAP 315 (445) Q Consensus 311 LlDaP 315 (445) T Consensus 149 IVTAa 153 (317) T PRK13943 149 FVTVG 153 (317) T ss_pred EEEEC T ss_conf 99852 |
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-06 Score=66.44 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=73.3 Q ss_pred CCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----CCCCCEE Q ss_conf 35632133100355644700001025684100010596798776544320488741772077445774-----3447668 Q gi|254780666|r 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAV 310 (445) Q Consensus 236 ~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-----~~~fD~i 310 (445) T Consensus 289 ~l~Lqg~e~V~DayCG~GtftLpLA~qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~~p~~~~e~~~~D~~ 368 (434) T TIGR00479 289 ALELQGEEKVVDAYCGVGTFTLPLAKQAKSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETVLPKQPWEGISPDVV 368 (434) T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEE T ss_conf 97159865578631575520044440121888871437678999888886035320133312321101442226778988 Q ss_pred EECCCCCC Q ss_conf 96167421 Q gi|254780666|r 311 LVDAPCSS 318 (445) Q Consensus 311 LlDaPCSg 318 (445) T Consensus 369 llDPPR~G 376 (434) T TIGR00479 369 LLDPPRKG 376 (434) T ss_pred EECCCCCC T ss_conf 88888987 |
The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing. |
| >KOG2730 consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=2.1e-05 Score=59.80 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=72.0 Q ss_pred CCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCCCC-----CCEEEECC Q ss_conf 13310035564470000102568410001059679877654432048874-1772077445774344-----76689616 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL-----FDAVLVDA 314 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~~~-----fD~iLlDa 314 (445) T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263) T KOG2730 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263) T ss_pred CCCHHHHHHHCCCCHHHHHHHHCCEEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHHHHHHHHHEEEEEECCC T ss_conf 74300254536884288998718807998526788887760650325775058883309999998864101045661699 Q ss_pred CCCCCCHHHC Q ss_conf 7421100110 Q gi|254780666|r 315 PCSSTGTIRR 324 (445) Q Consensus 315 PCSg~Gt~rr 324 (445) T Consensus 174 pwggp~y~~~ 183 (263) T KOG2730 174 PWGGPSYLRA 183 (263) T ss_pred CCCCCCHHHH T ss_conf 9999631332 |
|
| >pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00076 Score=48.27 Aligned_cols=73 Identities=23% Similarity=0.217 Sum_probs=32.2 Q ss_pred CCCEECCCCCCCCCEEEEC---CCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCC--CCCCCCEEEECC Q ss_conf 3310035564470000102---568410001059679877654432048874-177207744577--434476689616 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKKLFDAVLVDA 314 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~---~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~--~~~~fD~iLlDa 314 (445) T Consensus 50 ~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~IDlDP 128 (375) T pfam02005 50 GIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVIDLDP 128 (375) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEEECC T ss_conf 8669754675419999999746998669995599899999999888659987378754759999985588675686789 |
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria |
| >pfam04445 DUF548 Protein of unknown function (DUF548) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0005 Score=49.61 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=71.4 Q ss_pred CCCCCCCCCCCCCCC--CEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC---------CCEEEEECC Q ss_conf 212322235632133--100355644700001025684100010596798776544320488---------741772077 Q gi|254780666|r 229 SASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL---------YAEDIIEMD 297 (445) Q Consensus 229 aSql~~~~l~~~~g~--~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~---------~~~~~~~~D 297 (445) T Consensus 61 ~~e~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gd 140 (235) T pfam04445 61 RGEAIAKAVGIKGGYLPTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGS 140 (235) T ss_pred CHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCC T ss_conf 21589998667889998389878775788999981899699997889999999999999874815579999628998388 Q ss_pred CCCCC--CCCCCCEEEECCC Q ss_conf 44577--4344766896167 Q gi|254780666|r 298 AFDYC--PKKLFDAVLVDAP 315 (445) Q Consensus 298 ~~~~~--~~~~fD~iLlDaP 315 (445) T Consensus 141 s~~~l~~~~~~~DvIYLDPM 160 (235) T pfam04445 141 SADQLEPNIDQPDVVYLDPM 160 (235) T ss_pred HHHHHHHCCCCCCEEEECCC T ss_conf 79997524689878997376 |
Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock. |
| >PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00089 Score=47.74 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=57.5 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC----CCCC Q ss_conf 2235632133100355644700001025---68410001059679877654432048874177207744577----4344 Q gi|254780666|r 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKL 306 (445) Q Consensus 234 ~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~----~~~~ 306 (445) T Consensus 16 l~~L~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~-~r~~~~~~nF~~l~~~l~~~~~ 94 (309) T PRK00050 16 VDGLAIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFG-GRFTIVHGNFSDLAEYLAEVGK 94 (309) T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCC T ss_conf 983682899999993889839999999727999889999898899999999865258-8289992779889999986388 Q ss_pred CCEEEECCCCCCC Q ss_conf 7668961674211 Q gi|254780666|r 307 FDAVLVDAPCSST 319 (445) Q Consensus 307 fD~iLlDaPCSg~ 319 (445) T Consensus 95 vdgil~DLGvSS~ 107 (309) T PRK00050 95 VDGILLDLGVSSP 107 (309) T ss_pred CCEEEEEEECCCH T ss_conf 7789997224833 |
|
| >PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0013 Score=46.51 Aligned_cols=74 Identities=28% Similarity=0.377 Sum_probs=58.7 Q ss_pred CCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCC Q ss_conf 32133100355644700001025684100010596798776544320488741772077445774-34476689616742 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCS 317 (445) T Consensus 208 l~~Gm~aVDLGAaPGGWT~qLv~rg~~V~AVDnG~-----m~~~L~~~~--~V~H~~~dgf~f~P~~~~vdwlVCDmvek 280 (356) T PRK11760 208 LASGMRAVDLGACPGGWTYQLVRRGMFVTAVDNGP-----MAESLMDTG--QVEHLRADGFKFRPTRKNVDWLVCDMVEK 280 (356) T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCC-----CCHHHHCCC--CEEEEECCCEEECCCCCCEEEEEEECCCC T ss_conf 16997587558699705899997798899865876-----787575288--75788146705636998520899705368 Q ss_pred CC Q ss_conf 11 Q gi|254780666|r 318 ST 319 (445) Q Consensus 318 g~ 319 (445) T Consensus 281 P~ 282 (356) T PRK11760 281 PA 282 (356) T ss_pred HH T ss_conf 89 |
|
| >pfam01795 Methyltransf_5 MraW methylase family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0016 Score=45.77 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=62.4 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECC---CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC------C Q ss_conf 22235632133100355644700001025---68410001059679877654432048874177207744577------4 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------P 303 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~---~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~------~ 303 (445) T Consensus 12 vi~~L~~~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~~-~r~~~~~~nF~~l~~~l~~~~ 90 (310) T pfam01795 12 VVELLNIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFK-GRVTLIHSNFANLFAYLKELG 90 (310) T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHHHCC T ss_conf 9972683899999995889719999999848999979999898999999998530258-858999253757999998759 Q ss_pred CCCCCEEEECCCCCCC Q ss_conf 3447668961674211 Q gi|254780666|r 304 KKLFDAVLVDAPCSST 319 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~ 319 (445) T Consensus 91 ~~~vdGil~DLGvSS~ 106 (310) T pfam01795 91 VGKVDGILFDLGVSSP 106 (310) T ss_pred CCCCCEEEEECCCCCH T ss_conf 8766789996446814 |
Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0023 Score=44.73 Aligned_cols=74 Identities=27% Similarity=0.207 Sum_probs=50.4 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECCCCCC Q ss_conf 2133100355644700001025684100010596798776544320488741772077445774-344766896167421 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDaPCSg 318 (445) T Consensus 50 ~~~~~vLDva~GTGd~a~~l-~~~~~v~~~D~s~~ML~~a~~~~--------~~v~~~ae~LPf~d~sFD~vt-----~~ 115 (225) T PRK05785 50 KSPLKVLDAGAGPGNMAYHL-RKIRYVVALDYTEEMLRLNLVAD--------DKVVGSFEAMPFRDKSFDLVM-----SG 115 (225) T ss_pred CCCCEEEEECCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHCC--------CCEEEHHHHCCCCCCCEEEEE-----EE T ss_conf 88882899568843999996-34786999988999999876432--------113731853999988252776-----34 Q ss_pred CCHHHCCCHH Q ss_conf 1001101103 Q gi|254780666|r 319 TGTIRRHPDV 328 (445) Q Consensus 319 ~Gt~rr~Pd~ 328 (445) T Consensus 116 Fg-lRN~~d~ 124 (225) T PRK05785 116 YA-LHASDDI 124 (225) T ss_pred EE-EECCCCH T ss_conf 43-0048889 |
|
| >KOG1253 consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0063 Score=41.47 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=34.0 Q ss_pred CCCCEECCCCCCCCCEEEE---CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCC-----CCCCCCCEEE Q ss_conf 1331003556447000010---2568410001059679877654432048874-17720774457-----7434476689 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDY-----CPKKLFDAVL 311 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l---~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~-----~~~~~fD~iL 311 (445) T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525) T KOG1253 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCEEE T ss_conf 75008987645517888998870424531036787778899986655067322112441027789875645212466672 Q ss_pred ECCC Q ss_conf 6167 Q gi|254780666|r 312 VDAP 315 (445) Q Consensus 312 lDaP 315 (445) T Consensus 189 LDPy 192 (525) T KOG1253 189 LDPY 192 (525) T ss_pred CCCC T ss_conf 3788 |
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0042 Score=42.78 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=68.2 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCEEE Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434-476689 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVL 311 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~-~fD~iL 311 (445) T Consensus 5 Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~--~~~n~~ii~~D~L~~~~~~~~~~~iv 82 (169) T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPYKVV 82 (169) T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHC--CCCCEEEEECCHHCCCCCCCCCCEEE T ss_conf 9886389994979996897029999999731635316378899999998641--07977999571112553115873699 Q ss_pred ECCCCCCC Q ss_conf 61674211 Q gi|254780666|r 312 VDAPCSST 319 (445) Q Consensus 312 lDaPCSg~ 319 (445) T Consensus 83 ~NLPY~Is 90 (169) T smart00650 83 GNLPYNIS 90 (169) T ss_pred ECCCCCCH T ss_conf 34763011 |
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0039 Score=43.00 Aligned_cols=69 Identities=25% Similarity=0.238 Sum_probs=57.1 Q ss_pred CCCCEECCCCCCCCCEEEECCCC-CCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEE Q ss_conf 13310035564470000102568-4100010596798776544320488741772077445774344766896 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~~~-~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLl 312 (445) T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~La 148 (218) T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLA 148 (218) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCC-EEEEEECCCCC--CCCCEEEEEE T ss_conf 3653244156667088999985037887627884788885306221562-16774313368--9864038985 |
|
| >PHA02056 putative methyltransferase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0052 Score=42.04 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=57.7 Q ss_pred CCCCCCCEECCCCCCCCCEEEECC--CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCC Q ss_conf 632133100355644700001025--684100010596798776544320488741772077445774344766896167 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l~~--~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iLlDaP 315 (445) T Consensus 61 Da~~tG~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkkil-----PeAtWI~~Dv~~~~~~~~FD~aIsNPP 135 (279) T PHA02056 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPP 135 (279) T ss_pred ECCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCC-----CCCEEEECCEECCCCCCCEEEEECCCC T ss_conf 025785388821461235799985068863589940857988643207-----640277323130356662004533899 Q ss_pred CC Q ss_conf 42 Q gi|254780666|r 316 CS 317 (445) Q Consensus 316 CS 317 (445) T Consensus 136 FG 137 (279) T PHA02056 136 FG 137 (279) T ss_pred CC T ss_conf 76 |
|
| >KOG3420 consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0052 Score=42.07 Aligned_cols=87 Identities=22% Similarity=0.402 Sum_probs=69.7 Q ss_pred CCCCCCCEECCCCCCCCCEEEE-CCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCEEEECCC Q ss_conf 6321331003556447000010-256841000105967987765443204887417720774457743-44766896167 Q gi|254780666|r 238 GTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAP 315 (445) Q Consensus 238 ~~~~g~~VLD~CAAPGGKT~~l-~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~-~~fD~iLlDaP 315 (445) T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~~g~fDtaviNpp 123 (185) T KOG3420 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELKGGIFDTAVINPP 123 (185) T ss_pred CCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHH-HHEEEEECCCHHCCCCEEEEEEECCC T ss_conf 12047462252476115677750578733786405889999986166875233-42122221551105876766786689 Q ss_pred CCCCCHHHCCCHH Q ss_conf 4211001101103 Q gi|254780666|r 316 CSSTGTIRRHPDV 328 (445) Q Consensus 316 CSg~Gt~rr~Pd~ 328 (445) T Consensus 124 ---FGTk~~~aDm 133 (185) T KOG3420 124 ---FGTKKKGADM 133 (185) T ss_pred ---CCCCCCCCCH T ss_conf ---8764344338 |
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0042 Score=42.73 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=69.6 Q ss_pred CCCCCCCCCCCCCC--CEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC---------CCEEEEECCC Q ss_conf 12322235632133--100355644700001025684100010596798776544320488---------7417720774 Q gi|254780666|r 230 ASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL---------YAEDIIEMDA 298 (445) Q Consensus 230 Sql~~~~l~~~~g~--~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~---------~~~~~~~~D~ 298 (445) T Consensus 75 gq~lakAvG~k~~~~P~VlDATAGLGrDAfvLAslGc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds 154 (250) T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250) T ss_pred CCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCH T ss_conf 62667875667899981898788746889999817986999978899999999999998738155899996167865868 Q ss_pred CCCCC--CCCCCEEEECCC Q ss_conf 45774--344766896167 Q gi|254780666|r 299 FDYCP--KKLFDAVLVDAP 315 (445) Q Consensus 299 ~~~~~--~~~fD~iLlDaP 315 (445) T Consensus 155 ~~~L~~~~~~~DVIYLDPM 173 (250) T PRK10742 155 LTALTDITPRPQVVYLDPM 173 (250) T ss_pred HHHHHHCCCCCCEEEECCC T ss_conf 9999735889888997366 |
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.021 Score=37.54 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=49.0 Q ss_pred CCCCEECCCCCCCCCEEEECC-----CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEE-EC Q ss_conf 133100355644700001025-----684100010596798776544320488741772077445774-34476689-61 Q gi|254780666|r 241 NNLSVLDLCAAPGGKTAQLIV-----SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL-VD 313 (445) Q Consensus 241 ~g~~VLD~CAAPGGKT~~l~~-----~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iL-lD 313 (445) T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak----~~-~~~~~~Va~~~~lP~~d~s~D~vl~vF 159 (272) T PRK11088 85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAK----RY-PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272) T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHC----CC-CCCEEEEEECCCCCCCCCCCEEEEEEE T ss_conf 7864888158777899999997411578737998117999999962----68-885499961001888766540899984 Q ss_pred CC Q ss_conf 67 Q gi|254780666|r 314 AP 315 (445) Q Consensus 314 aP 315 (445) T Consensus 160 sP 161 (272) T PRK11088 160 AP 161 (272) T ss_pred CC T ss_conf 37 |
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.026 Score=36.86 Aligned_cols=70 Identities=27% Similarity=0.248 Sum_probs=54.0 Q ss_pred CCCCCEECCCCCCCCCEEEECC---C---CCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEE Q ss_conf 2133100355644700001025---6---8410001059679877654432048874177207744577434476689 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIV---S---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL 311 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~---~---~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~~fD~iL 311 (445) T Consensus 60 ~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~-~~~~~~d~l~~-~~~~~DvV~ 135 (233) T PRK06202 60 DRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVT-FRFAVSDELVA-EGERFDVVY 135 (233) T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCC-EEEEEHHHHCC-CCCCCCEEE T ss_conf 88728998347875799999999975599638999779889999998734036983-69973432024-578875760 |
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.013 Score=39.09 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=58.0 Q ss_pred CCEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---CCCCCEEEECCCCCC Q ss_conf 31003556447000010256841-00010596798776544320488741772077445774---344766896167421 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~---~~~fD~iLlDaPCSg 318 (445) T Consensus 1 l~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~------~~~~~Di~~~~~~~~~~~vDll~ggpPCQ~ 74 (275) T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275) T ss_pred CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCHHHCCCCCCCCCCCEEEECCCCCC T ss_conf 95999767807899999986998999996899999999988799------952588644653213788788986899987 Q ss_pred CCHHHCC Q ss_conf 1001101 Q gi|254780666|r 319 TGTIRRH 325 (445) Q Consensus 319 ~Gt~rr~ 325 (445) T Consensus 75 fS~ag~~ 81 (275) T cd00315 75 FSIAGKR 81 (275) T ss_pred CCCCCCC T ss_conf 3547863 |
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PTZ00338 dimethyladenosine transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.017 Score=38.17 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=38.9 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCEE Q ss_conf 235632133100355644700001025684100010596798776544320488-7417720774457743447668 Q gi|254780666|r 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDAV 310 (445) Q Consensus 235 ~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~-~~~~~~~~D~~~~~~~~~fD~i 310 (445) T Consensus 32 ~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d~-~~~~~v 107 (296) T PTZ00338 32 EKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTEF-PYFDVC 107 (296) T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCCC-CCCCEE T ss_conf 9607898995799668542999999835891799994889999999998514456673577050531856-411446 |
|
| >pfam07021 MetW Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.011 Score=39.54 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=48.1 Q ss_pred CCCCCCEECCCCCCCCCEEEECC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCC---CCCCCCCCCEEEE Q ss_conf 32133100355644700001025-68410001059679877654432048874177207744---5774344766896 Q gi|254780666|r 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLV 312 (445) Q Consensus 239 ~~~g~~VLD~CAAPGGKT~~l~~-~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~---~~~~~~~fD~iLl 312 (445) T Consensus 11 I~~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~k----g---~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193) T pfam07021 11 IPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAK----G---LSVIQGDADKGLEHFPDKSFDYVIL 81 (193) T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHC----C---CCEECCCHHHCHHHCCCCCCCEEEH T ss_conf 589698998368898999999876698769833899999999864----7---9545077445974577678037869 |
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.012 Score=39.34 Aligned_cols=73 Identities=26% Similarity=0.315 Sum_probs=36.5 Q ss_pred CCCEECCCCCCCCCEEEECC-CCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCEEEECC Q ss_conf 33100355644700001025-684-100010596798776544320488741772077445774--34476689616 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV-SGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDA 314 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~-~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~--~~~fD~iLlDa 314 (445) T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380) T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP 129 (380) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCEEECCC T ss_conf 73886435553366754534257617997158989999999999834766632553428999872588763781389 |
|
| >pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.022 Score=37.45 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=39.8 Q ss_pred CEECCCCCCCCCEEEECCCCCC-HHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CCCCEEEECCCCCCCC Q ss_conf 1003556447000010256841-000105967987765443204887417720774457743--4476689616742110 Q gi|254780666|r 244 SVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTG 320 (445) Q Consensus 244 ~VLD~CAAPGGKT~~l~~~~~~-i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~--~~fD~iLlDaPCSg~G 320 (445) T Consensus 2 ~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~~~-------~~~Di~~~~~~~~~~~Dvl~ggpPCQ~fS 74 (319) T pfam00145 2 KFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPKV-------PIGDITLIDIKDIPDIDILTGGFPCQDFS 74 (319) T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCC-------CCCCCCCCCHHHCCCCCEEEECCCCCCCC T ss_conf 58997807078999999879929999838999999999877999-------61775408874788868898689998724 Q ss_pred HHHC Q ss_conf 0110 Q gi|254780666|r 321 TIRR 324 (445) Q Consensus 321 t~rr 324 (445) T Consensus 75 ~ag~ 78 (319) T pfam00145 75 IAGK 78 (319) T ss_pred CCCC T ss_conf 0155 |
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.042 Score=35.33 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=55.2 Q ss_pred CCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCCCCEEEECC Q ss_conf 2133100355644700001025684100010596798776544320488741772077445774-34476689616 Q gi|254780666|r 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 (445) Q Consensus 240 ~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~-~~~fD~iLlDa 314 (445) T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-----ma~sL~dtg~--v~h~r~DGfk~~P~r~~idWmVCDm 278 (358) T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-----MAQSLMDTGQ--VTHLREDGFKFRPTRSNIDWMVCDM 278 (358) T ss_pred CCCCEEEECCCCCCCCCHHHHHCCEEEEEECCCH-----HHHHHHCCCC--EEEEECCCCCCCCCCCCCCEEEEEH T ss_conf 6786564226689862254231560899943622-----2265632665--2444134730366788775687520 |
|
| >PRK00274 ksgA dimethyladenosine transferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.022 Score=37.43 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=59.5 Q ss_pred CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCC Q ss_conf 2223563213310035564470000102568410001059679877654432048874177207744577434----476 Q gi|254780666|r 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFD 308 (445) Q Consensus 233 ~~~~l~~~~g~~VLD~CAAPGGKT~~l~~~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~----~fD 308 (445) T Consensus 31 Iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~------~~~~ii~~D~L~~~~~~~~~~~~~ 104 (267) T PRK00274 31 IVRAADLQPGDRVLEIGPGLGALTEPLLERAAKVTAIEIDRDLAPILRET------DNLTIIEGDALKVDLEELAEGQPL 104 (267) T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHC------CCEEEEECHHHHCCHHHHCCCCCE T ss_conf 99960899999079963888889999996268058863688999998504------786999650664786774567872 Q ss_pred EEEECCCCCCCC Q ss_conf 689616742110 Q gi|254780666|r 309 AVLVDAPCSSTG 320 (445) Q Consensus 309 ~iLlDaPCSg~G 320 (445) T Consensus 105 ~vvgNLPY~Iss 116 (267) T PRK00274 105 KVVANLPYNIST 116 (267) T ss_pred EEEECCCCHHHH T ss_conf 799558830312 |
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.078 Score=33.33 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=56.0 Q ss_pred CCEECCCCCCCCCEEEECCCCC-CHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----CCCEEEECCCCC Q ss_conf 3100355644700001025684-10001059679877654432048874177207744577434----476689616742 Q gi|254780666|r 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCS 317 (445) Q Consensus 243 ~~VLD~CAAPGGKT~~l~~~~~-~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~~----~fD~iLlDaPCS 317 (445) T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328) T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328) T ss_pred CEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-----CCCHHHHHHHHCHHHCCCCCCCEEEECCCCC T ss_conf 54998658756588999864984899874698899999985888-----7420303766052223556763798589972 Q ss_pred CCCHHHCC Q ss_conf 11001101 Q gi|254780666|r 318 STGTIRRH 325 (445) Q Consensus 318 g~Gt~rr~ 325 (445) T Consensus 79 ~FS~aG~r 86 (328) T COG0270 79 DFSIAGKR 86 (328) T ss_pred CHHHHCCC T ss_conf 13340776 |
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00081 Score=48.07 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=113.1 Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCHHHH--HHHHHHHHCCCCCCEECCCCCCHHHCHHHHHCCCEE Q ss_conf 997899998841267999999996146983667615998999--986432102356611104567855585011001013 Q gi|254780666|r 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW--AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 (445) Q Consensus 148 ~P~Wl~~~~~~~~G~~~~~~l~~~~~~p~~l~i~~k~~~~~~--~~~L~~~~~~~~~~~~~~~~~~i~~~~~f~eG~~~V 225 (445) T Consensus 114 vkdAIvd~~~~~~~~r~-----~v~~~~Pdv~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLA-------- 180 (381) T COG0116 114 VKDAIVDRFRRKYGRRP-----SVDLDGPDVRINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLA-------- 180 (381) T ss_pred HHHHHHHHHHHCCCCCC-----CCCCCCCCEEEEEEEECCEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHH-------- T ss_conf 99999999755028898-----74445898699999975778999967886321065614688878569999-------- Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCEE--EECC-C-------------------------------CC------- Q ss_conf 46321232223563213310035564470000--1025-6-------------------------------84------- Q gi|254780666|r 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA--QLIV-S-------------------------------GA------- 264 (445) Q Consensus 226 QD~aSql~~~~l~~~~g~~VLD~CAAPGGKT~--~l~~-~-------------------------------~~------- 264 (445) T Consensus 181 -----aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381) T COG0116 181 -----AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381) T ss_pred -----HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf -----999997399999834168877347999999734456876332200455432138889999999999865147666 Q ss_pred CHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCCC-CCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHH Q ss_conf 10001059679877654432048874-17720774457743-44766896167421100110110333288667788999 Q gi|254780666|r 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 (445) Q Consensus 265 ~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~~-~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~ 342 (445) T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYG----------e--Rlg~~--~~v~~ 321 (381) T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG----------E--RLGSE--ALVAK 321 (381) T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCH----------H--HCCCH--HHHHH T ss_conf 5898748989999999989976988328999744321668766699899589830----------1--11770--46999 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 999999999986089828999774788 Q gi|254780666|r 343 FQRKLLLQGISFVKPGGIVVFSNCSLD 369 (445) Q Consensus 343 ~Q~~iL~~a~~~lk~gG~lvYsTCSi~ 369 (445) T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~e~~ 348 (381) T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTSEDL 348 (381) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 999999999987257736999766778 |
|
| >KOG1098 consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0026 Score=44.27 Aligned_cols=41 Identities=7% Similarity=0.128 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 999999999998608982899977478834399989999996 Q gi|254780666|r 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 342 ~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 688 RKkrra~kRLek~kKKA-e~I~d~~d~te~eK~kei~klykk 728 (780) T KOG1098 688 RKKRRAQKRLEKVKKKA-ELISDTSDITEREKAKEIKKLYKK 728 (780) T ss_pred HHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 88899999999999875-212565210126789999999997 |
|
| >pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.66 Score=26.46 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=31.7 Q ss_pred HHHHHHHHHHCCCCCEEEEEEC---C----------CCHHHCHHHHHHHHHHCCCCEE Q ss_conf 9999999986089828999774---7----------8834399989999996887417 Q gi|254780666|r 345 RKLLLQGISFVKPGGIVVFSNC---S----------LDKQDSEEVVQKVLRSSPIPVE 389 (445) Q Consensus 345 ~~iL~~a~~~lk~gG~lvYsTC---S----------i~~eEne~vV~~fL~~~~~~~~ 389 (445) T Consensus 179 ~~av~ni~~LLkpGG~Lil~gvl~~t~Y~vG~~~F~~l-~l~ee~v~~Al~~aG~~i~ 235 (261) T pfam01234 179 CRALRNLASLLKPGGHLVLGGVLEESWYMFGEKKFSCL-YLSKEVVEDALVDAGLDVE 235 (261) T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCEEEECCEECCEE-ECCHHHHHHHHHHCCCEEE T ss_conf 99999998647888469999861773488789860225-2289999999997797789 |
|
| >pfam04816 DUF633 Family of unknown function (DUF633) | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.081 Score=33.20 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=81.3 Q ss_pred CCCCCCCCCEEEECCCC--CCHHHHHCCHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCC-CCCCCEEEECCCCCCCCHH Q ss_conf 35564470000102568--410001059679877654432048874-1772077445774-3447668961674211001 Q gi|254780666|r 247 DLCAAPGGKTAQLIVSG--AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTI 322 (445) Q Consensus 247 D~CAAPGGKT~~l~~~~--~~i~A~D~~~~Rl~~l~~~~~R~g~~~-~~~~~~D~~~~~~-~~~fD~iLlDaPCSg~Gt~ 322 (445) T Consensus 3 DIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~e~vd~ivI----AGMGG- 77 (204) T pfam04816 3 DIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEELDLIDVIVI----AGMGG- 77 (204) T ss_pred EECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCEEEE----ECCCH- T ss_conf 1054508999999977998779996166749999999999759975389997784220586776577999----48689- Q ss_pred HCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCEEE Q ss_conf 10110333288667788999999999999986089828999774788343999899999968874178 Q gi|254780666|r 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 (445) Q Consensus 323 rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~~~ 390 (445) T Consensus 78 -------------------~lI~~IL~~~~~~~~~~~~lI-----LQP~~~~~~lR~~L~~~g~~I~~ 121 (204) T pfam04816 78 -------------------TLIADILEQGKNKLAGVKRLI-----LQPNINEEELREWLSQNSWQIKA 121 (204) T ss_pred -------------------HHHHHHHHHCHHHHCCCCEEE-----EECCCCHHHHHHHHHHCCCEEEE T ss_conf -------------------999999981845535757799-----95797859999999988997888 |
This family of proteins are uncharacterized have no known function. |
| >pfam10354 DUF2431 Domain of unknown function (DUF2431) | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.34 Score=28.63 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=61.1 Q ss_pred HHCCCCCCEEEEECCCCCCCC-----CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 320488741772077445774-----344766896167421100110110333288667788999999999999986089 Q gi|254780666|r 283 LDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 (445) Q Consensus 283 ~~R~g~~~~~~~~~D~~~~~~-----~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~ 357 (445) T Consensus 49 L~~~g~~--V~~gVDAt~l~~~~~~~~~~fD~IiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~sa~~~l~~ 117 (166) T pfam10354 49 LEELGVT--VLHGVDATKLKKHFSLKKNRFDRIIFNFPHAGGKI---------KDSDRNIRLNRELLRGFFKNASELLKP 117 (166) T ss_pred HHHCCCE--EEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9858995--99857445366684434783578998799888877---------412555899999999999999998279 Q ss_pred CCEEEEEECCCCHHHCHHHHHHHHHHC Q ss_conf 828999774788343999899999968 Q gi|254780666|r 358 GGIVVFSNCSLDKQDSEEVVQKVLRSS 384 (445) Q Consensus 358 gG~lvYsTCSi~~eEne~vV~~fL~~~ 384 (445) T Consensus 118 ~G~i~vTl~~g~py-~~W~i~~lA~~~ 143 (166) T pfam10354 118 GGEIHVTLKDGEPY-NSWNIEALAAEA 143 (166) T ss_pred CCEEEEEECCCCCC-CEECHHHHHHHC T ss_conf 98999995389998-730388999747 |
This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known. |
| >pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.44 Score=27.76 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=39.4 Q ss_pred CCCCCEEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHH Q ss_conf 34476689616742110011011033328866778899999999999998608982899977478834399989999996 Q gi|254780666|r 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 (445) Q Consensus 304 ~~~fD~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~ 383 (445) T Consensus 83 ~~~fD~vi~DPP---------------FLseec~~K~a~t-------~~~L~k~~~kli~~T----g~~~~~~~~kll~~ 136 (161) T pfam10237 83 KGKFDRVIADPP---------------FLSEECLTKTAIT-------IKLLLKPDSKLLLCT----GERMEDLAAKLLGL 136 (161) T ss_pred HCCCCEEEECCC---------------CCCHHHHHHHHHH-------HHHHHCCCCEEEEEC----HHHHHHHHHHHCCC T ss_conf 086788998999---------------9899999999999-------999808998799934----89999999997298 Q ss_pred C Q ss_conf 8 Q gi|254780666|r 384 S 384 (445) Q Consensus 384 ~ 384 (445) T Consensus 137 ~ 137 (161) T pfam10237 137 K 137 (161) T ss_pred E T ss_conf 2 |
This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes. |
| >KOG3115 consensus | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.2 Score=24.45 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=92.6 Q ss_pred CCCEECCCCCCCCCEEEECC---------CCCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----CCCC Q ss_conf 33100355644700001025---------6841000105967987765443204887417720774457743----4476 Q gi|254780666|r 242 NLSVLDLCAAPGGKTAQLIV---------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK----KLFD 308 (445) Q Consensus 242 g~~VLD~CAAPGGKT~~l~~---------~~~~i~A~D~~~~Rl~~l~~~~~R~g~~~~~~~~~D~~~~~~~----~~fD 308 (445) T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249) T KOG3115 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249) T ss_pred CCEEEEECCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCCC T ss_conf 64278604676501012054686301220012688889999999997526543345653034212022051034312334 Q ss_pred EEEECCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCHHHHHHHHHHCCCCE Q ss_conf 68961674211001101103332886677889999999999999860898289997747883439998999999688741 Q gi|254780666|r 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 (445) Q Consensus 309 ~iLlDaPCSg~Gt~rr~Pd~~w~~~~~~l~~l~~~Q~~iL~~a~~~lk~gG~lvYsTCSi~~eEne~vV~~fL~~~~~~~ 388 (445) T Consensus 141 kmff~fp---------dpH-fk~----~khk~rii~~~l~~eyay~l~~gg~~ytitDv---~elh~wm~~~~e~hplfe 203 (249) T KOG3115 141 KMFFLFP---------DPH-FKA----RKHKWRIITSTLLSEYAYVLREGGILYTITDV---KELHEWMVKHLEEHPLFE 203 (249) T ss_pred CCEEECC---------CHH-HHH----HHCCCEEECHHHHHHHHHHHHCCCEEEEEEEH---HHHHHHHHHHHHHCCHHH T ss_conf 4403258---------805-766----52121012034798777422138448997008---888999999887274765 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC Q ss_conf 781376323355664345586880898876323557778886314667654127889 Q gi|254780666|r 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 (445) Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~~~~~~~~~~g~DGFF~A~l~k~~~~~ 445 (445) T Consensus 204 ~lt~ee~~~d~~v~~~~~~teeg~k-v----------~r~~-g~~f~a~f~r~~~~~ 248 (249) T KOG3115 204 RLTEEEEENDPCVELLSNATEEGKK-V----------ARNG-GKKFVAVFRRIPNPA 248 (249) T ss_pred HCCHHHHCCCCCHHHHHHHHHHCCC-C----------CCCC-CCEEEEEEEECCCCC T ss_conf 2134552378302233333554013-3----------3567-762100245246787 |
|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 445 | Fmu (Sun) domain protein [Candidatus Liberibacter asiat | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 3e-69 | |
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 2e-44 | |
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 7e-36 | |
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 1e-31 | |