254780785

 Score =  146 bits (369), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 83/89 (93%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSITLERK +L+KEYA+SPGDTGSPEVQV +CTERIANLT HFK+AKKDVNSK+GL  LI
Sbjct: 1  MSITLERKGQLIKEYAISPGDTGSPEVQVVICTERIANLTIHFKNAKKDVNSKMGLNGLI 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          SLR+SLLK+L+ KDV+RYK+L++SLKLRR
Sbjct: 61 SLRNSLLKHLKMKDVKRYKKLIESLKLRR 89

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 68/89 (76%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK EL+ EYA   GDTGSPEVQVAV TERI NLTEHFK   KD +S+ GL +++
Sbjct: 1  MSITAERKAELITEYATKEGDTGSPEVQVAVLTERINNLTEHFKGHSKDNHSRRGLLKMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          +LR SLL YL +KD +RYK L+Q L +RR
Sbjct: 61 ALRRSLLDYLNKKDEKRYKDLIQRLGIRR 89

Species: Polymorphum gilvum
Genus: 
Family: 
Order: 
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 68/89 (76%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK  L+KEYA + GDTGSPEVQVA+ TERI NLTEHFK  KKD +S+ GL  L+
Sbjct: 1  MSITAERKSALIKEYATNEGDTGSPEVQVAILTERITNLTEHFKGHKKDNHSRRGLLTLV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R SLL YL++KD  RY +L+ SL +RR
Sbjct: 61 STRRSLLDYLKKKDEGRYSKLIASLGIRR 89

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK+ELM E+A + GDTGSPEVQVA+ +ERI NLT+HFK  KKD +S+ GL  L+
Sbjct: 1  MSITAERKQELMGEFATAKGDTGSPEVQVAILSERIKNLTDHFKDHKKDNHSRRGLLALV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R SLL YL+RKD  RY+ L++ L LRR
Sbjct: 61 SQRRSLLDYLKRKDDARYQTLIEKLGLRR 89

Species: Mesorhizobium opportunistum
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK  L+KEYA + GDTGSPEVQVA+ TERI NLTEHFK  KKD +S+ GL  ++
Sbjct: 1  MSITAERKAALIKEYATAEGDTGSPEVQVAILTERINNLTEHFKDHKKDNHSRRGLLTMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R SLL YL++KD  RY +L+ SL +RR
Sbjct: 61 SSRRSLLDYLKKKDEGRYSKLINSLGIRR 89

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 67/89 (75%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSITLERK ELMKEYA   GDTGSPEVQVA+ TERI NLTEHFK  KKD +S+ GL +++
Sbjct: 1  MSITLERKAELMKEYATKDGDTGSPEVQVAILTERITNLTEHFKDHKKDNHSRRGLLKMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R  LL YL+ K+ +RY  L+  L LRR
Sbjct: 61 SQRRRLLDYLKSKEEQRYTTLIGRLGLRR 89

Species: Aurantimonas manganoxydans
Genus: Aurantimonas
Family: Aurantimonadaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK+ELM E+A + GDTGSPEVQVA+ +ERI NLT+HFK  KKD +S+ GL  L+
Sbjct: 1  MSITAERKKELMGEFATAKGDTGSPEVQVAILSERIKNLTDHFKDHKKDNHSRRGLLALV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R SLL YL+RKD  RY+ L++ L LRR
Sbjct: 61 SQRRSLLDYLKRKDDVRYQTLIEKLGLRR 89

Species: Mesorhizobium loti
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 69/89 (77%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK EL+KEYA    DTGS EVQVAV TERIANLTEHFK+ KKD +S+ GL +L+
Sbjct: 1  MSITAERKAELIKEYARGENDTGSAEVQVAVLTERIANLTEHFKTHKKDNHSRRGLLKLV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R  LL YL++ D +RYK +VQ+L LRR
Sbjct: 61 SQRRRLLDYLKKIDEDRYKAIVQALGLRR 89

Species: Oceanicaulis sp. HTCC2633
Genus: Oceanicaulis
Family: Hyphomonadaceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 67/89 (75%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK  L+KEYA   GDTGSPEVQVA+ TERI NLTEHFK  KKD +S+ GL  ++
Sbjct: 1  MSITAERKSALIKEYATVEGDTGSPEVQVAILTERINNLTEHFKDHKKDNHSRRGLLTMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R SLL YL++KD  RY +L+ SL +RR
Sbjct: 61 SSRRSLLDYLKKKDEGRYSKLISSLGIRR 89

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 67/89 (75%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MSIT ERK  L+KEYA   GDTGSPEVQVA+ TERI NLTEHFK  KKD +S+ GL  ++
Sbjct: 1  MSITAERKSALIKEYATVEGDTGSPEVQVAILTERINNLTEHFKDHKKDNHSRRGLLTMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R SLL YL++KD  RY +L+ SL +RR
Sbjct: 61 SSRRSLLDYLKKKDEGRYSKLITSLGIRR 89

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  123 bits (312), Expect = 9e-30
 Identities = 51/89 (57%), Positives = 67/89 (75%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MS+T E+K E++KEY    GDTGSPEVQVA+ TERI +LTEH K  KKD +S+ GL +++
Sbjct: 1  MSLTKEKKAEIIKEYGRHEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
            R  LL YL++KDVERY+ L++ L LRR
Sbjct: 61 GQRRKLLDYLKKKDVERYRALIERLGLRR 89

Length = 89

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 49/86 (56%), Positives = 65/86 (75%)

Query: 4  TLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLR 63
          T ERK+E++KE+ +   DTGSPEVQ+A+ TERI  LTEH K+ KKD +S+ GL +L+  R
Sbjct: 1  TKERKQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRR 60

Query: 64 SSLLKYLERKDVERYKRLVQSLKLRR 89
            LLKYL+R DVERY+ L++ L LRR
Sbjct: 61 RRLLKYLKRTDVERYRSLIKRLGLRR 86

This model is built to recognize specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. Length = 86

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 45/79 (56%), Positives = 61/79 (77%)

Query: 7  RKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSL 66
          +K+E++KE+ ++ GDTGSPEVQ+A+ TERI NLTEH +  KKD +SK GL  L+S R  L
Sbjct: 1  KKQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRL 60

Query: 67 LKYLERKDVERYKRLVQSL 85
          LKYL+RKD  RY+ L++ L
Sbjct: 61 LKYLKRKDRLRYEWLIEKL 79

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.. Length = 80

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 37/83 (44%), Positives = 54/83 (65%)

Query: 6  ERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSS 65
            K   + E+  +  DTGS EVQ+A+ TERI  L +H +  KKD +SK GL +L+S R  
Sbjct: 1  MAKGLKISEFLKAEKDTGSVEVQLALLTERIVRLRKHLEEHKKDYSSKRGLIKLVSKRRR 60

Query: 66 LLKYLERKDVERYKRLVQSLKLR 88
          LL+YL++K+  RY+ L++ L LR
Sbjct: 61 LLRYLKKKNTVRYENLIEQLGLR 83

Length = 83

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 28/69 (40%), Positives = 41/69 (59%)

Query: 21 DTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR 80
          + GS E QV   T +I  LT H +  KKD +S+ GL +++  R  LL YL +K+  RYK+
Sbjct: 18 NRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKK 77

Query: 81 LVQSLKLRR 89
          L+  L +R 
Sbjct: 78 LISQLGIRE 86

Length = 90

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 29/82 (35%), Positives = 41/82 (50%)

Query: 7   RKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSL 66
           +K  + +     P DTGS  VQ+   TE+I NL  H     KD   K  +  L++ R  L
Sbjct: 109 KKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNLRAHLILRCKDHPKKRTMSILLARRQKL 168

Query: 67  LKYLERKDVERYKRLVQSLKLR 88
           +KYL + D E YK     LK++
Sbjct: 169 MKYLYKTDFELYKHTCNLLKIK 190

Length = 302

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 30/74 (40%), Positives = 39/74 (52%)

Query: 15  YAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKD 74
           +     DTGS EVQ A  T  I  L+ H +  KKD  S  GL + +  R   LKYL R +
Sbjct: 176 FQRFESDTGSAEVQAAFPTVEIRKLSRHEELHKKDQASVRGLRQEVQKRQRALKYLARAN 235

Query: 75  VERYKRLVQSLKLR 88
            +RY R ++ L LR
Sbjct: 236 RQRYVRTIKKLALR 249

Length = 256

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 27/46 (58%), Positives = 32/46 (69%)

Query: 26 EVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLE 71
          EVQ+A+ TERI NL EH    KKD +SK GL  L+S R  LLKYL+
Sbjct: 1  EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.. Length = 46

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 52/89 (58%), Positives = 64/89 (71%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MS+T E K+EL  EY +   DTGS EVQ+A+ TERI NLTEH K  KKD +S+ GL  L+
Sbjct: 1  MSLTSEIKQELRDEYGIPEVDTGSGEVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R  LLKYL+RKDV RY+ L++ L LRR
Sbjct: 61 SKRRRLLKYLKRKDVLRYRWLIKKLGLRR 89

Length = 89

Probab=100.00  E-value=2.5e-43  Score=260.36  Aligned_cols=86  Identities=57%  Similarity=0.862  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             88999999999545888788899999997799999999999778413527789999997899999998409999999999
Q gi|254780785|r    4 TLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQ   83 (89)
Q Consensus         4 ~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~   83 (89)
T Consensus         1 ~~e~K~~ii~~f~~hE~DTGS~~VQiAlLT~rI~~LteHLk~nkKDh~SRRGLL~lVg~RRrLL~Yl~~~d~e~Y~~LI~   80 (86)
T TIGR00952         1 TKERKQEIIKEFQLHEKDTGSPEVQIALLTERINQLTEHLKANKKDHHSRRGLLKLVGRRRRLLKYLKRTDVERYRSLIK   80 (86)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             91248999998545899855889999999999988878875178983302799999997788999971016799999998


Q ss_pred             HHCCCC
Q ss_conf             836899
Q gi|254780785|r   84 SLKLRR   89 (89)
Q Consensus        84 ~LglRk   89 (89)
T Consensus        81 ~LGLR~   86 (86)
T TIGR00952        81 KLGLRR   86 (86)
T ss_pred             HCCCCC
T ss_conf             447999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family includes specifically bacterial, chloroplast, and mitochondrial ribosomal protein S15. The homologous proteins of Archaea and Eukarya are designated S13. Escherichia coli ribosomal protein S15 has been shown to regulate the expression of its own mRNA by a feedback mechanism at the translational level. The translational operator overlaps the ribosome binding site and folds into two mutually exclusive structures, one consisting of two stem-loops (I and II) and the other one forming a pseudoknot. The two structures, which seem to be energetically equivalent are in dynamic equilibrium, and the pseudoknot is stabilized by binding of S15. However, binding of S15 does not prevent 30 S subunit binding but traps the subunit into an incompetent translation initiation complex. Repression can be alleviated by 16 S rRNA, which is able to displace the bound S15, thus allowing translation to proceed .; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome.

Probab=100.00  E-value=1.2e-38  Score=234.43  Aligned_cols=89  Identities=56%  Similarity=0.859  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98888999999999545888788899999997799999999999778413527789999997899999998409999999
Q gi|254780785|r    1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR   80 (89)
Q Consensus         1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~   80 (89)
T Consensus         1 M~~~k~~k~~li~kf~~~~~DTGS~eVQiA~LT~rI~~Lt~Hl~~n~KD~~s~RgL~~lv~kRkrlL~YL~~~d~~~Y~~   80 (89)
T PRK05626          1 MSLTKEKKAEIIKEFGRHEGDTGSPEVQVALLTERINHLTEHLKEHKKDHHSRRGLLKMVGQRRKLLDYLKKKDVERYRA   80 (89)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99888999999999769999878789999999999999999998876625789999999999999999998668999999


Q ss_pred             HHHHHCCCC
Q ss_conf             999836899
Q gi|254780785|r   81 LVQSLKLRR   89 (89)
Q Consensus        81 ~i~~LglRk   89 (89)
T Consensus        81 ~i~~LgLRk   89 (89)
T PRK05626         81 LIEKLGLRR   89 (89)
T ss_pred             HHHHHCCCC
T ss_conf             999958999

Probab=100.00  E-value=4.8e-34  Score=209.04  Aligned_cols=82  Identities=45%  Similarity=0.653  Sum_probs=80.3

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf             99999999545888788899999997799999999999778413527789999997899999998409999999999836
Q gi|254780785|r    7 RKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLK   86 (89)
Q Consensus         7 ~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~Lg   86 (89)
T Consensus         2 ~k~~~I~~f~~~~~DTGS~evQiA~lT~rI~~Lt~Hl~~~~KD~~srRgL~~lv~kRrrlL~YL~~~d~~~Y~~~i~~Lg   81 (83)
T pfam00312         2 AKGLKISEFLKAEKDTGSVEVQLALLTERIVRLRKHLEEHKKDYSSKRGLIKLVSKRRRLLRYLKKKNTVRYENLIEQLG   81 (83)
T ss_pred             CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf             47689999769999868899999999999999999998578863269999999999999999998579999999999838


Q ss_pred             CC
Q ss_conf             89
Q gi|254780785|r   87 LR   88 (89)
Q Consensus        87 lR   88 (89)
T Consensus        82 lR   83 (83)
T pfam00312        82 LR   83 (83)
T ss_pred             CC
T ss_conf             89

Probab=100.00  E-value=6.5e-33  Score=202.76  Aligned_cols=79  Identities=35%  Similarity=0.514  Sum_probs=76.0

Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf             9999545888788899999997799999999999778413527789999997899999998409999999999836899
Q gi|254780785|r   11 LMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLKLRR   89 (89)
Q Consensus        11 ~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~LglRk   89 (89)
T Consensus         8 ~~~s~~~~e~DTGS~eVQIAlLT~rI~~Lt~Hlk~~kKD~~srRgL~~lV~kRrrLL~YL~~kd~~~Y~~li~~LgiRk   86 (90)
T CHL00027          8 SVISQEEKEENRGSVEFQVFSFTNKIRRLTSHLELHKKDYSSQRGLRKILGKRQRLLAYLSKKNRVRYKELISQLGIRE   86 (90)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             8888872368878954657768989999999998779830029999999999999999998569999999999919987

Probab=99.98  E-value=1.5e-32  Score=200.80  Aligned_cols=89  Identities=58%  Similarity=0.770  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98888999999999545888788899999997799999999999778413527789999997899999998409999999
Q gi|254780785|r    1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR   80 (89)
Q Consensus         1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~   80 (89)
T Consensus         1 m~~~~~~k~~l~~eyg~~~~dtgs~evq~a~Lt~ri~~L~~Hlk~hkKD~~srRGL~~~vskrrrLl~Ylk~~~~~~y~~   80 (89)
T COG0184           1 MSLTSEIKQELRDEYGIPEVDTGSGEVQLALLTERINNLTEHLKEHKKDHHSRRGLLLLVSKRRRLLKYLKRKDVLRYRW   80 (89)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             98608999999999388988899849999999999999999999777605679879999999999999987558531899


Q ss_pred             HHHHHCCCC
Q ss_conf             999836899
Q gi|254780785|r   81 LVQSLKLRR   89 (89)
Q Consensus        81 ~i~~LglRk   89 (89)
T Consensus        81 li~~lglr~   89 (89)
T COG0184          81 LIKKLGLRR   89 (89)
T ss_pred             HHHHHHCCC
T ss_conf             887762459

Probab=99.98  E-value=2.8e-32  Score=199.31  Aligned_cols=80  Identities=56%  Similarity=0.827  Sum_probs=78.5

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf             99999999545888788899999997799999999999778413527789999997899999998409999999999836
Q gi|254780785|r    7 RKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLK   86 (89)
Q Consensus         7 ~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~Lg   86 (89)
T Consensus         1 ~k~~ii~~~~~~~~DtGS~evQia~LT~rI~~L~~Hl~~~kkD~~skrgL~~lv~kRrrLL~YLkr~d~~~y~~~i~~Lg   80 (80)
T cd00353           1 KKQEILKEFGLAEGDTGSPEVQLALLTERIVNLTEHLEKNKKDKHSKRGLLLLVSKRRRLLKYLKRKDRLRYEWLIEKLG   80 (80)
T ss_pred             CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf             97899998779999878799999999999999999998877621789999999999999999998668999999999829

S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.

Probab=99.87  E-value=3.6e-22  Score=143.39  Aligned_cols=85  Identities=35%  Similarity=0.443  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             88999999999545888788899999997799999999999778413527789999997899999998409999999999
Q gi|254780785|r    4 TLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQ   83 (89)
Q Consensus         4 ~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~   83 (89)
T Consensus       106 h~~rkl~l~r~LQR~PfDTgS~pVqiacLTeKIlNlRaHli~~~rD~~~Kr~m~i~L~RR~klMK~Ly~~dfelykhvc~  185 (302)
T PTZ00119        106 HKYKKLIIRRHLQRRPFDTGSAPVQIGCLTEKILNLRAHLIRRCKDHCKKRTMSILLARRQKLMKYLYKTDFELYKHTCQ  185 (302)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999604887679955311788999988999986443103778999999998999999998600699999999


Q ss_pred             HHCCC
Q ss_conf             83689
Q gi|254780785|r   84 SLKLR   88 (89)
Q Consensus        84 ~LglR   88 (89)
T Consensus       186 ~L~ik  190 (302)
T PTZ00119        186 LLKIK  190 (302)
T ss_pred             HHCCE
T ss_conf             75533

Probab=99.70  E-value=8.2e-18  Score=119.35  Aligned_cols=74  Identities=41%  Similarity=0.513  Sum_probs=73.1

Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf             54588878889999999779999999999977841352778999999789999999840999999999983689
Q gi|254780785|r   15 YAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLKLR   88 (89)
Q Consensus        15 f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~LglR   88 (89)
T Consensus       176 ~~~~e~dtgs~~vQ~~~~t~~i~~~~r~~~~Hkkd~~~~~~l~~~~qkR~r~Lkyl~~~~~~~y~~~~~kl~~r  249 (256)
T KOG2815         176 FQRFESDTGSAEVQAAFPTVEIRKLSRHEELHKKDQASVRGLRQEVQKRQRALKYLARANRQRYVRTIKKLALR  249 (256)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf             52011224466576776889999998899998889888889999999999999999986785414532220225

Probab=99.41  E-value=2.1e-13  Score=95.01  Aligned_cols=46  Identities=59%  Similarity=0.757  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999997799999999999778413527789999997899999998
Q gi|254780785|r   26 EVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLE   71 (89)
Q Consensus        26 evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk   71 (89)
T Consensus         1 ~vqia~lt~rI~~L~~h~~~~~kD~~~kr~L~~~v~kr~~Ll~ylk   46 (46)
T cd00677           1 EVQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK   46 (46)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9103579999999999998779963018779999999999987719

This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.

Probab=97.94  E-value=4.9e-05  Score=48.79  Aligned_cols=68  Identities=22%  Similarity=0.319  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             888999999999545888788899999997799999999999778413527789999997899999998409
Q gi|254780785|r    3 ITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKD   74 (89)
Q Consensus         3 ~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d   74 (89)
T Consensus        63 vtG~ki~~ILk~~gl~p~---iPEDL~~Li-kKAv~irkHLe~n~KD~~~kr~L~LiESkI~RL~rYYk~~~  130 (148)
T PTZ00072         63 VTGRKILRILKHRGLAPE---IPEDLYFLI-KKAVQMRKHLERNRKDKDSKFRLILVESRIHRLARYYKRVK  130 (148)
T ss_pred             CCCCHHHHHHHHCCCCCC---CCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             135639999998799899---958999999-99999999998765532457899999999999999986067

Probab=97.93  E-value=4.2e-05  Score=49.12  Aligned_cols=66  Identities=27%  Similarity=0.446  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8999999999545888788899999997799999999999778413527789999997899999998409
Q gi|254780785|r    5 LERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKD   74 (89)
Q Consensus         5 ~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d   74 (89)
T Consensus        68 Gkki~~iLk~~gl~p~---iPEDL~~L-ikkAv~lrkHLe~n~kD~~~Kr~L~LiESkI~RL~rYYk~~~  133 (151)
T PRK08561         68 GKKITEILEENGLAPE---IPEDLMNL-IKKAVNLRKHLEENPKDLHNKRGLQLIESKIRRLVKYYKRTG  133 (151)
T ss_pred             CCCHHHHHHHCCCCCC---CCHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7839999997699888---96799999-999999999998756426668999999999999999987148

Probab=97.55  E-value=6.3e-05  Score=48.15  Aligned_cols=81  Identities=28%  Similarity=0.347  Sum_probs=76.7

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf             99999999545888788899999997799999999999778413527789999997899999998409999999999836
Q gi|254780785|r    7 RKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLK   86 (89)
Q Consensus         7 ~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~Lg   86 (89)
T Consensus        90 ~~~el~ke~~~~~~~~~~~e~k~~k~t~a~~~d~~~~~~~~~e~~~~~r~~l~~~kr~~~lril~~~n~ss~e~~k~~lk  169 (256)
T KOG2815          90 EKAELSKEVKNHKQDNNSLEEKFAKKTAAIRRDTFELEAIIIELSGKIRIKLLIDKREKILRILRRRNLSSFEKIKIKLK  169 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999998788877889999998886101088772300555130247534537889999862311114999999998


Q ss_pred             C
Q ss_conf             8
Q gi|254780785|r   87 L   87 (89)
Q Consensus        87 l   87 (89)
T Consensus       170 ~  170 (256)
T KOG2815         170 L  170 (256)
T ss_pred             H
T ss_conf             7

Probab=90.71  E-value=0.4  Score=27.18  Aligned_cols=67  Identities=21%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999545888788899999997799999999999778413527789999997899999998409
Q gi|254780785|r    4 TLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKD   74 (89)
Q Consensus         4 ~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d   74 (89)
T Consensus        67 ~G~kI~Rilk~~Gl~Pe---iPe-DLy~likkAv~iRkHLer~RKD~d~K~RLILveSRihRlARYYk~~~  133 (151)
T KOG0400          67 TGNKILRILKSNGLAPE---IPE-DLYHLIKKAVAIRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKM  133 (151)
T ss_pred             HHHHHHHHHHHCCCCCC---CCH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCC
T ss_conf             00699999997699889---938-89999999999999998741266642578863678999999997414

 Score =  107 bits (269), Expect = 7e-25
 Identities = 41/88 (46%), Positives = 58/88 (65%)

Query: 2  SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLIS 61
          S++ E   +++ E+     DTGS EVQVA+ T +I +L  HF   KKD +S+ GL R++S
Sbjct: 1  SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVS 60

Query: 62 LRSSLLKYLERKDVERYKRLVQSLKLRR 89
           R  LL YL+RKDV RY +L++ L LRR
Sbjct: 61 QRRKLLDYLKRKDVARYTQLIERLGLRR 88

 Score =  105 bits (264), Expect = 2e-24
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MS++ E   +++ E+     DTGS EVQVA+ T +I +L  HF   KKD +S+ GL R++
Sbjct: 1  MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R  LL YL+RKDV RY +L++ L LRR
Sbjct: 61 SQRRKLLDYLKRKDVARYTQLIERLGLRR 89

 Score =  102 bits (257), Expect = 2e-23
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 2  SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLIS 61
          ++T ERKRE+++++ V   DTGSPEVQ+A+ TE+I NL EH +  KKD +S+ GL +++ 
Sbjct: 1  ALTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVG 60

Query: 62 LRSSLLKYLERKDVERYKRLVQSLKLRR 89
           R  LL YL  KDV RY+ +V+ L LRR
Sbjct: 61 KRRRLLAYLRNKDVARYREIVEKLGLRR 88

 Score =  100 bits (252), Expect = 6e-23
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          M IT E K+++++E+A  PGDTGS EVQVA+ T RI  L+EH K  KKD +S  GL  ++
Sbjct: 1  MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLR 88
            R  LL+YL+R+D ERY+ L++ L +R
Sbjct: 61 GQRRRLLRYLQREDPERYRALIEKLGIR 88

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 7  RKRELMKEYAV--SPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRS 64
          +K   +   +      + GS E QV   T +I  LT H +  KKD +S+ GL + +  R 
Sbjct: 2  KKNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQ 61

Query: 65 SLLKYLERKDVERYKRLVQSLKLRR 89
           LL YL + +  RYK L+  L +R 
Sbjct: 62 RLLAYLLKINGVRYKELISKLNIRE 86

Probab=100.00  E-value=4.1e-38  Score=230.28  Aligned_cols=88  Identities=50%  Similarity=0.753  Sum_probs=87.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98888999999999545888788899999997799999999999778413527789999997899999998409999999
Q gi|254780785|r    1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR   80 (89)
Q Consensus         1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~   80 (89)
                      |++++++|+++|++||+||+||||||||||+||+||.+|++|++.||||++|+|||.+||++|++||+||+++|+++|.+
T Consensus         1 m~~~~~~k~~ii~~f~~~~~DtGS~evQIA~LT~rI~~Lt~Hlk~~kkD~~srrgL~~lv~kRrklL~YLr~~d~~~Y~~   80 (89)
T 2vqe_O            1 MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRA   80 (89)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99889999999999768999879899999999999999999998778751109999999999999999998659999999


Q ss_pred             HHHHHCCC
Q ss_conf             99983689
Q gi|254780785|r   81 LVQSLKLR   88 (89)
Q Consensus        81 ~i~~LglR   88 (89)
                      +|++||||
T Consensus        81 vi~~LglR   88 (89)
T 2vqe_O           81 LIEKLGIR   88 (89)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHCCC
T ss_conf             99982899

Probab=100.00  E-value=1.6e-37  Score=226.97  Aligned_cols=88  Identities=47%  Similarity=0.716  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88889999999995458887888999999977999999999997784135277899999978999999984099999999
Q gi|254780785|r    2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRL   81 (89)
Q Consensus         2 ~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~   81 (89)
                      |++.++|+++|++||+||+||||||||||+||+||++|++||+.||||++|+|||.+||++|++||+||+++|+++|.++
T Consensus         1 ~l~~e~k~~ii~~f~~~~~DtGS~eVQIA~LT~rI~~Lt~Hlk~~kkD~~srrgL~~lv~kRrklL~YL~~~d~e~Y~~~   80 (88)
T 3ofo_O            1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL   80 (88)
T ss_dssp             CCCHHHHHHHHHHHSSSTTCTTCTHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             98779999999997689999788899999999999999999987766410299999999999999999986699999999


Q ss_pred             HHHHCCCC
Q ss_conf             99836899
Q gi|254780785|r   82 VQSLKLRR   89 (89)
Q Consensus        82 i~~LglRk   89 (89)
                      |++|||||
T Consensus        81 i~~LglRk   88 (88)
T 3ofo_O           81 IERLGLRR   88 (88)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHCCCC
T ss_conf             99958999

Probab=100.00  E-value=2.2e-37  Score=226.31  Aligned_cols=88  Identities=50%  Similarity=0.813  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88889999999995458887888999999977999999999997784135277899999978999999984099999999
Q gi|254780785|r    2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRL   81 (89)
Q Consensus         2 ~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~   81 (89)
                      |+++++|+++|++||+||+||||||||||+||++|.+|++||+.||||++|+|||.++|++|++||+||+++|+++|.++
T Consensus         1 s~~~~~k~~~i~~~~~~~~DtGS~evQiA~LT~rI~~L~~Hl~~~kkD~~s~rgL~~lv~~RkklL~YLr~~d~~~Y~~v   80 (88)
T 1a32_A            1 ALTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREI   80 (88)
T ss_dssp             -CCHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99889999999997689998698999999999999999999987766410399999999999999999986699999999


Q ss_pred             HHHHCCCC
Q ss_conf             99836899
Q gi|254780785|r   82 VQSLKLRR   89 (89)
Q Consensus        82 i~~LglRk   89 (89)
                      |++|||||
T Consensus        81 i~~LglRk   88 (88)
T 1a32_A           81 VEKLGLRR   88 (88)
T ss_dssp             HHHHTC--
T ss_pred             HHHHCCCC
T ss_conf             99958999

Probab=99.97  E-value=3.8e-33  Score=202.88  Aligned_cols=82  Identities=34%  Similarity=0.472  Sum_probs=76.5

Q ss_pred             HHHHHHH--HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9999999--54588878889999999779999999999977841352778999999789999999840999999999983
Q gi|254780785|r    8 KRELMKE--YAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSL   85 (89)
Q Consensus         8 k~~~i~~--f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~L   85 (89)
                      |+++|..  .+.+|+||||||||||+||+||.+|++||+.||||+||+|||..||++|++||+||+++|+++|.++|++|
T Consensus         3 K~~~~~~~~~~~~e~DtGS~evQiA~LT~rI~~Lt~Hlk~~kKD~~srRgL~~lv~~RkrlL~YL~r~d~~~Y~~~i~~L   82 (90)
T 3bbn_O            3 KNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISKL   82 (90)
T ss_dssp             HHHHHHHHHHSCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCSHHHHTTTTTT
T ss_pred             CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             23788898874488988980110232798999999999978772143898999999999999999865899999999992


Q ss_pred             CCCC
Q ss_conf             6899
Q gi|254780785|r   86 KLRR   89 (89)
Q Consensus        86 glRk   89 (89)
                      |||+
T Consensus        83 gLR~   86 (90)
T 3bbn_O           83 NIRE   86 (90)
T ss_dssp             TCCC
T ss_pred             CCCC
T ss_conf             8997

Probab=98.03  E-value=2.9e-06  Score=54.37  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999545888788899999997799999999999778413527789999997899999998409
Q gi|254780785|r    4 TLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKD   74 (89)
Q Consensus         4 ~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d   74 (89)
                      |.++..++.++-+..|.   -||--.. |-.+..++..|++.|+||.+++|+|....++.+||.+|++++.
T Consensus         2 tGkki~~iL~~~gl~p~---iPEDL~~-LikkAv~lrkHLe~n~kD~~nKr~L~LiESkI~RL~rYYk~~~   68 (84)
T 3jyv_O            2 TGNKIMRILKSNGLAPE---IPEDLYY-LIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVA   68 (84)
T ss_dssp             CHHHHHHHCSSSSCSSS---THHHHHH-HHHHHHHHTTSSSSCSCCSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCCCC---CCHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             41189999998799999---9689999-9999999999998787616678999999999999999998558

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 1e-23
 Identities = 42/88 (47%), Positives = 58/88 (65%)

Query: 2  SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLIS 61
          S++ E   +++ E+     DTGS EVQVA+ T +I +L  HF   KKD +S+ GL R++S
Sbjct: 1  SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVS 60

Query: 62 LRSSLLKYLERKDVERYKRLVQSLKLRR 89
           R  LL YL+RKDV RY RL++ L LRR
Sbjct: 61 QRRKLLDYLKRKDVARYTRLIERLGLRR 88

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 3  ITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISL 62
          +T ERKRE+++++ V   DTGSPEVQ+A+ TE+I NL EH +  KKD +S+ GL +++  
Sbjct: 1  LTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGK 60

Query: 63 RSSLLKYLERKDVERYKRLVQSLKL 87
          R  LL YL  KDV RY+ +V+ L L
Sbjct: 61 RRRLLAYLRNKDVARYREIVEKLGL 85

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 6  ERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSS 65
          E K+++++E+A  PGDTGS EVQVA+ T RI  L+EH K  KKD +S  GL  ++  R  
Sbjct: 3  EEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRR 62

Query: 66 LLKYLERKDVERYKRLVQSLKL 87
          LL+YL+R+D ERY+ L++ L +
Sbjct: 63 LLRYLQREDPERYRALIEKLGI 84

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-37  Score=226.25  Aligned_cols=88  Identities=48%  Similarity=0.728  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             88889999999995458887888999999977999999999997784135277899999978999999984099999999
Q gi|254780785|r    2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRL   81 (89)
Q Consensus         2 ~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~   81 (89)
                      |+++++|+++|++||+||+||||||||||+||+||.+|++||+.||||++|+|||.+||++|++||+||+++|+++|.++
T Consensus         1 ~l~~~~k~~ii~~~~~~~~DtGS~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~v   80 (88)
T d1vs5o1           1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRL   80 (88)
T ss_dssp             CCCHHHHHHHHHHHCSSSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             98779999999998689998788579898779999999999987665410399999999999999999986599999999


Q ss_pred             HHHHCCCC
Q ss_conf             99836899
Q gi|254780785|r   82 VQSLKLRR   89 (89)
Q Consensus        82 i~~LglRk   89 (89)
                      |++|||||
T Consensus        81 i~~LgLrk   88 (88)
T d1vs5o1          81 IERLGLRR   88 (88)
T ss_dssp             HTTTTCCC
T ss_pred             HHHHCCCC
T ss_conf             99958999

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=4.8e-36  Score=217.58  Aligned_cols=85  Identities=49%  Similarity=0.800  Sum_probs=84.0

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             88899999999954588878889999999779999999999977841352778999999789999999840999999999
Q gi|254780785|r    3 ITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLV   82 (89)
Q Consensus         3 ~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i   82 (89)
                      |++++|+++|++||+||+||||||||||+||+||++|++||+.||||++|+|||..||++|+++|+||+++|+++|.++|
T Consensus         1 ~~~~~K~~~i~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~srrgL~~lv~~RrklL~YLrk~d~~~Y~~~i   80 (85)
T d1a32a_           1 LTQERKREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIV   80 (85)
T ss_dssp             CCHHHHHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             98899999999976899987997998986189899999999877553224899999999999999999865999999999


Q ss_pred             HHHCC
Q ss_conf             98368
Q gi|254780785|r   83 QSLKL   87 (89)
Q Consensus        83 ~~Lgl   87 (89)
                      ++|||
T Consensus        81 ~~Lgl   85 (85)
T d1a32a_          81 EKLGL   85 (85)
T ss_dssp             HHHTC
T ss_pred             HHCCC
T ss_conf             88488

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: Ribosomal protein S15
domain: Ribosomal protein S15
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-35  Score=215.45  Aligned_cols=83  Identities=48%  Similarity=0.735  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             89999999995458887888999999977999999999997784135277899999978999999984099999999998
Q gi|254780785|r    5 LERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQS   84 (89)
Q Consensus         5 ~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~   84 (89)
                      +++|+++|++||+||+||||||||||+||+||.+|++||+.||||++|+|||.+||++|++||+||+++|+++|.++|++
T Consensus         2 k~~K~~ii~~~~~~~~DtGS~evQiA~lT~rI~~L~~Hlk~~kkD~~s~rgL~~lv~kRkklL~YLrk~d~~~Y~~li~~   81 (84)
T d1kuqa_           2 KEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEK   81 (84)
T ss_dssp             TTHHHHHHHHHCSSTTCCSSHHHHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             17999999997689999898899999889999999999987765410399999999999999999986699999999988


Q ss_pred             HCC
Q ss_conf             368
Q gi|254780785|r   85 LKL   87 (89)
Q Consensus        85 Lgl   87 (89)
                      |||
T Consensus        82 LgL   84 (84)
T d1kuqa_          82 LGI   84 (84)
T ss_dssp             TCC
T ss_pred             CCC
T ss_conf             388

 Score =  103 bits (258), Expect = 1e-23
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          M IT E K+++++E+A  PGDTGS EVQVA+ T RI  L+EH K  KKD +S  GL  ++
Sbjct: 1  MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLR 88
            R  LL+YL+R+D ERY+ L++ L +R
Sbjct: 61 GQRRRLLRYLQREDPERYRALIEKLGIR 88

 Score =  102 bits (256), Expect = 2e-23
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 1  MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60
          MS++ E   +++ E+     DTGS EVQVA+ T +I +L  HF   KKD +S+ GL R++
Sbjct: 1  MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV 60

Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89
          S R  LL YL+RKDV RY +L++ L LRR
Sbjct: 61 SQRRKLLDYLKRKDVARYTQLIERLGLRR 89

 Score = 91.4 bits (227), Expect = 4e-20
 Identities = 27/83 (32%), Positives = 40/83 (48%)

Query: 6  ERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSS 65
          +     +        + GS E QV   T +I  LT H +  KKD +S+ GL + +  R  
Sbjct: 3  KNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQR 62

Query: 66 LLKYLERKDVERYKRLVQSLKLR 88
          LL YL + +  RYK L+  L +R
Sbjct: 63 LLAYLLKINGVRYKELISKLNIR 85

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 37/69 (53%), Positives = 49/69 (71%)

Query: 21 DTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR 80
          DTGSPEVQ+A+ TE+I NL EH +  KKD +S+ GL +++  R  LL YL  KDV RY+ 
Sbjct: 1  DTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYRE 60

Query: 81 LVQSLKLRR 89
          +V+ L LRR
Sbjct: 61 IVEKLGLRR 69

 Score = 77.1 bits (190), Expect = 7e-16
 Identities = 11/66 (16%), Positives = 24/66 (36%)

Query: 10 ELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKY 69
            +     S G        +    ++  ++ +H +  +KD ++K  L  + S    L +Y
Sbjct: 4  NKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARY 63

Query: 70 LERKDV 75
               V
Sbjct: 64 YRTVAV 69

Probab=100.00  E-value=2e-37  Score=227.29  Aligned_cols=89  Identities=47%  Similarity=0.724  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98888999999999545888788899999997799999999999778413527789999997899999998409999999
Q gi|254780785|r    1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR   80 (89)
Q Consensus         1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~   80 (89)
                      ||+++++|+++|++|++||+||||||||||+||+||.+|++||+.||||++|+|||.++|++|++||+||+++|+++|.+
T Consensus         1 M~i~~~~k~~~i~~~~~~~~DtGS~evQIA~LT~rI~~L~~Hl~~~kkD~~s~rgL~~lv~kRrklL~YLr~~d~~~Y~~   80 (89)
T 3i1m_O            1 MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ   80 (89)
T ss_dssp             -CCCHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99878999999999768999878889999988999999999998774440009999999999999999998669999999


Q ss_pred             HHHHHCCCC
Q ss_conf             999836899
Q gi|254780785|r   81 LVQSLKLRR   89 (89)
Q Consensus        81 ~i~~LglRk   89 (89)
                      +|++|||||
T Consensus        81 ~i~~Lglrk   89 (89)
T 3i1m_O           81 LIERLGLRR   89 (89)
T ss_dssp             HHHHHTCCC
T ss_pred             HHHHHCCCC
T ss_conf             999958999

Probab=100.00  E-value=3.6e-37  Score=225.94  Aligned_cols=88  Identities=50%  Similarity=0.753  Sum_probs=87.6

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             98888999999999545888788899999997799999999999778413527789999997899999998409999999
Q gi|254780785|r    1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR   80 (89)
Q Consensus         1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~   80 (89)
                      |++++++|+++|++||+||+||||+|||||+||++|.+|++|++.||||++|+|||.++|++|++||+||+++|+++|.+
T Consensus         1 m~l~~~~k~~~i~~~~~~~~DtGS~evQIA~LT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRrklL~YLr~~d~~~Y~~   80 (89)
T 2vqe_O            1 MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRA   80 (89)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             99889999999999768987789877999998999999999998777742149999999999999999998669999999


Q ss_pred             HHHHHCCC
Q ss_conf             99983689
Q gi|254780785|r   81 LVQSLKLR   88 (89)
Q Consensus        81 ~i~~LglR   88 (89)
                      +|++||||
T Consensus        81 ~i~~Lglr   88 (89)
T 2vqe_O           81 LIEKLGIR   88 (89)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHCCC
T ss_conf             99993899

Probab=100.00  E-value=5.8e-35  Score=213.74  Aligned_cols=85  Identities=32%  Similarity=0.396  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             89999999995458887888999999977999999999997784135277899999978999999984099999999998
Q gi|254780785|r    5 LERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQS   84 (89)
Q Consensus         5 ~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~   84 (89)
                      +++++++|.+|++||+||||||||||+||+||++|++||+.||||++|+|||.+||++|++||+||+++|+++|.++|+.
T Consensus         2 ~~~k~~~i~~~~~~~~DtGS~eVQiA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~~RkklL~YL~~~d~~~Y~~li~~   81 (90)
T 3bbn_O            2 KKNSFISVISDEKKEENKGSVEFQVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKINGVRYKELISK   81 (90)
T ss_dssp             CHHHHHHHHHHSCCSSSSCSTTHHHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCSHHHHTTTTT
T ss_pred             CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             42789999987159988688999999999999999999998766201588799999999999999986699999999999


Q ss_pred             HCCCC
Q ss_conf             36899
Q gi|254780785|r   85 LKLRR   89 (89)
Q Consensus        85 LglRk   89 (89)
                      ||||+
T Consensus        82 Lglr~   86 (90)
T 3bbn_O           82 LNIRE   86 (90)
T ss_dssp             TTCCC
T ss_pred             HCCCC
T ss_conf             48997

Probab=99.97  E-value=2.1e-30  Score=188.54  Aligned_cols=69  Identities=54%  Similarity=0.840  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf             788899999997799999999999778413527789999997899999998409999999999836899
Q gi|254780785|r   21 DTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRLVQSLKLRR   89 (89)
Q Consensus        21 DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~i~~LglRk   89 (89)
                      ||||+|||||+||+||.+|++||+.||||++|+|||.++|++|++||+||+++|+++|.++|++|||||
T Consensus         1 DTGS~eVQiA~LT~rI~~L~~Hl~~~~KD~~~krgL~~lv~kRkkLL~YL~~~d~~~Y~~~i~~Lglrk   69 (69)
T 1a32_A            1 DTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLGLRR   69 (69)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC--
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             868879999987999999999998777742149999999999999999998569999999999958999

Probab=99.91  E-value=3.2e-25  Score=159.94  Aligned_cols=77  Identities=16%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--HH--HHHHHHHH
Q ss_conf             999999545888788899999997799999999999778413527789999997899999998409--99--99999998
Q gi|254780785|r    9 RELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKD--VE--RYKRLVQS   84 (89)
Q Consensus         9 ~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d--~~--~Y~~~i~~   84 (89)
                      .+.|.+|+.+++||||+|||||+||+||.+|++||+.||||+||+|||..+|++|++||+||+++|  ++  .|...++.
T Consensus         3 ~k~i~~~~~~~~dtGs~evqia~Lt~rI~~L~~Hl~~nkkD~~skRgL~~lv~kRkrLl~Ylkr~~~lp~~w~y~~~~a~   82 (84)
T 3jyv_O            3 GNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATAS   82 (84)
T ss_dssp             HHHHHHHCSSSSCSSSTHHHHHHHHHHHHHHTTSSSSCSCCSHHHHHHHHHHHHHHHHHHHHHHHCCSSCSHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHH
T ss_conf             11899999987999999389999999999999999878761667899999999999999998705859999726778674


Q ss_pred             H
Q ss_conf             3
Q gi|254780785|r   85 L   85 (89)
Q Consensus        85 L   85 (89)
                      |
T Consensus        83 l   83 (84)
T 3jyv_O           83 A   83 (84)
T ss_dssp             C
T ss_pred             H
T ss_conf             0