254780785
30S ribosomal protein S15
GeneID in NCBI database: | 8209791 | Locus tag: | CLIBASIA_03380 |
Protein GI in NCBI database: | 254780785 | Protein Accession: | YP_003065198.1 |
Gene range: | +(476758, 477027) | Protein Length: | 89aa |
Gene description: | 30S ribosomal protein S15 | ||
COG prediction: | [J] Ribosomal protein S15P/S13E | ||
KEGG prediction: | rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 | ||
SEED prediction: | SSU ribosomal protein S15p (S13e) | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome SSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | |||
315122007 | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter sola | 1 | 7e-34 | |
328545913 | 89 | 30S ribosomal protein S15 [polymorphum gilvum SL003B-26 | 1 | 8e-24 | |
222147152 | 89 | 30S ribosomal protein S15 [Agrobacterium vitis S4] Leng | 1 | 1e-23 | |
260461976 | 89 | ribosomal protein S15 [Mesorhizobium opportunistum WSM2 | 1 | 2e-23 | |
86355772 | 89 | 30S ribosomal protein S15 [Rhizobium etli CFN 42] Lengt | 1 | 3e-23 | |
90420520 | 89 | 30S ribosomal protein S15 [Aurantimonas manganoxydans S | 1 | 3e-23 | |
13474633 | 89 | 30S ribosomal protein S15 [Mesorhizobium loti MAFF30309 | 1 | 3e-23 | |
83945014 | 89 | ribosomal protein S15 [Oceanicaulis alexandrii HTCC2633 | 1 | 6e-23 | |
209551634 | 89 | 30S ribosomal protein S15 [Rhizobium leguminosarum bv. | 1 | 9e-23 | |
116249887 | 89 | 30S ribosomal protein S15 [Rhizobium leguminosarum bv. | 1 | 1e-22 |
>gi|315122007|ref|YP_004062496.1| 30S ribosomal protein S15 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 89 | Back alignment and organism information |
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Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 70/89 (78%), Positives = 83/89 (93%) Query: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60 MSITLERK +L+KEYA+SPGDTGSPEVQV +CTERIANLT HFK+AKKDVNSK+GL LI Sbjct: 1 MSITLERKGQLIKEYAISPGDTGSPEVQVVICTERIANLTIHFKNAKKDVNSKMGLNGLI 60 Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89 SLR+SLLK+L+ KDV+RYK+L++SLKLRR Sbjct: 61 SLRNSLLKHLKMKDVKRYKKLIESLKLRR 89 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|328545913|ref|YP_004306022.1| 30S ribosomal protein S15 [polymorphum gilvum SL003B-26A1] Length = 89 | Back alignment and organism information |
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>gi|222147152|ref|YP_002548109.1| 30S ribosomal protein S15 [Agrobacterium vitis S4] Length = 89 | Back alignment and organism information |
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>gi|260461976|ref|ZP_05810221.1| ribosomal protein S15 [Mesorhizobium opportunistum WSM2075] Length = 89 | Back alignment and organism information |
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>gi|86355772|ref|YP_467664.1| 30S ribosomal protein S15 [Rhizobium etli CFN 42] Length = 89 | Back alignment and organism information |
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>gi|90420520|ref|ZP_01228427.1| 30S ribosomal protein S15 [Aurantimonas manganoxydans SI85-9A1] Length = 89 | Back alignment and organism information |
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>gi|13474633|ref|NP_106202.1| 30S ribosomal protein S15 [Mesorhizobium loti MAFF303099] Length = 89 | Back alignment and organism information |
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>gi|83945014|ref|ZP_00957380.1| ribosomal protein S15 [Oceanicaulis alexandrii HTCC2633] Length = 89 | Back alignment and organism information |
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>gi|209551634|ref|YP_002283551.1| 30S ribosomal protein S15 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 89 | Back alignment and organism information |
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>gi|116249887|ref|YP_765725.1| 30S ribosomal protein S15 [Rhizobium leguminosarum bv. viciae 3841] Length = 89 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
PRK05626 | 89 | PRK05626, rpsO, 30S ribosomal protein S15; Reviewed | 9e-30 | |
TIGR00952 | 86 | TIGR00952, S15_bact, ribosomal protein S15, bacterial/o | 4e-22 | |
cd00353 | 80 | cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15 (pr | 5e-16 | |
pfam00312 | 83 | pfam00312, Ribosomal_S15, Ribosomal protein S15 | 4e-14 | |
CHL00027 | 90 | CHL00027, rps15, ribosomal protein S15 | 3e-10 | |
PTZ00119 | 302 | PTZ00119, PTZ00119, 40S ribosomal protein S15; Provisio | 5e-08 | |
KOG2815 | 256 | KOG2815, KOG2815, KOG2815, Mitochondrial/choloroplast r | 1e-06 | |
cd00677 | 46 | cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-bindin | 9e-05 | |
COG0184 | 89 | COG0184, RpsO, Ribosomal protein S15P/S13E [Translation | 1e-20 |
>gnl|CDD|180170 PRK05626, rpsO, 30S ribosomal protein S15; Reviewed | Back alignment and domain information |
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>gnl|CDD|130027 TIGR00952, S15_bact, ribosomal protein S15, bacterial/organelle | Back alignment and domain information |
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>gnl|CDD|48353 cd00353, Ribosomal_S15p_S13e, Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome | Back alignment and domain information |
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>gnl|CDD|109373 pfam00312, Ribosomal_S15, Ribosomal protein S15 | Back alignment and domain information |
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>gnl|CDD|176968 CHL00027, rps15, ribosomal protein S15 | Back alignment and domain information |
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>gnl|CDD|173410 PTZ00119, PTZ00119, 40S ribosomal protein S15; Provisional | Back alignment and domain information |
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>gnl|CDD|38026 KOG2815, KOG2815, KOG2815, Mitochondrial/choloroplast ribosomal protein S15 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|48354 cd00677, S15_NS1_EPRS_RNA-bind, S15/NS1/EPRS_RNA-binding domain | Back alignment and domain information |
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>gnl|CDD|30533 COG0184, RpsO, Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
TIGR00952 | 86 | S15_bact ribosomal protein S15; InterPro: IPR005290 Rib | 100.0 | |
PRK05626 | 89 | rpsO 30S ribosomal protein S15; Reviewed | 100.0 | |
pfam00312 | 83 | Ribosomal_S15 Ribosomal protein S15. | 100.0 | |
CHL00027 | 90 | rps15 ribosomal protein S15 | 100.0 | |
COG0184 | 89 | RpsO Ribosomal protein S15P/S13E [Translation, ribosoma | 99.98 | |
cd00353 | 80 | Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic) | 99.98 | |
PTZ00119 | 302 | 40S ribosomal protein S15; Provisional | 99.87 | |
KOG2815 | 256 | consensus | 99.7 | |
cd00677 | 46 | S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. | 99.41 | |
PTZ00072 | 148 | 40S ribosomal protein S13; Provisional | 97.94 | |
PRK08561 | 151 | rps15p 30S ribosomal protein S15P; Reviewed | 97.93 | |
KOG2815 | 256 | consensus | 97.55 | |
KOG0400 | 151 | consensus | 90.71 |
>TIGR00952 S15_bact ribosomal protein S15; InterPro: IPR005290 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PRK05626 rpsO 30S ribosomal protein S15; Reviewed | Back alignment and domain information |
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>pfam00312 Ribosomal_S15 Ribosomal protein S15 | Back alignment and domain information |
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>CHL00027 rps15 ribosomal protein S15 | Back alignment and domain information |
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>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome | Back alignment and domain information |
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>PTZ00119 40S ribosomal protein S15; Provisional | Back alignment and domain information |
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>KOG2815 consensus | Back alignment and domain information |
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>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain | Back alignment and domain information |
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>PTZ00072 40S ribosomal protein S13; Provisional | Back alignment and domain information |
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>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed | Back alignment and domain information |
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>KOG2815 consensus | Back alignment and domain information |
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>KOG0400 consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
2qou_O | 89 | Crystal Structure Of The Bacterial Ribosome From Es | 6e-27 | |
2avy_O | 89 | Crystal Structure Of The Bacterial Ribosome From Es | 2e-26 | |
1p6g_O | 88 | Real Space Refined Coordinates Of The 30s Subunit F | 8e-26 | |
1a32_A | 88 | Ribosomal Protein S15 From Bacillus Stearothermophi | 1e-25 | |
2i2p_O | 88 | Crystal Structure Of Ribosome With Messenger Rna An | 2e-25 | |
2gy9_O | 86 | Structure Of The 30s Subunit Of A Pre-Translocation | 4e-25 | |
1qd7_H | 85 | Partial Model For 30s Ribosomal Subunit Length = 85 | 2e-24 | |
1fjg_O | 89 | Fitting Of Components With Known Structure Into An | 1e-22 | |
1fka_O | 89 | Structure Of Functionally Activated Small Ribosomal | 4e-22 | |
1i94_O | 88 | Crystal Structures Of The Small Ribosomal Subunit W | 1e-21 | |
1kuq_A | 87 | Crystal Structure Of T3c Mutant S15 Ribosomal Prote | 2e-21 | |
1g1x_B | 88 | Structure Of Ribosomal Proteins S15, S6, S18, And 1 | 4e-21 | |
1f7y_A | 89 | The Crystal Structure Of Two Uucg Loops Highlights | 1e-20 | |
1dk1_A | 86 | Detailed View Of A Key Element Of The Ribosome Asse | 7e-19 | |
3bbn_O | 90 | Homology Model For The Spinach Chloroplast 30s Subu | 4e-13 |
gi|157836043|pdb|2QOU|O Chain O, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Spectinomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 89 | Back alignment and structure |
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 59/89 (66%) Query: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60 MS++ E +++ E+ DTGS EVQVA+ T +I +L HF KKD +S+ GL R++ Sbjct: 1 MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMV 60 Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLRR 89 S R LL YL+RKDV RY +L++ L LRR Sbjct: 61 SQRRKLLDYLKRKDVARYTQLIERLGLRR 89 |
gi|83754053|pdb|2AVY|O Chain O, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 89 | Back alignment and structure |
>gi|33357892|pdb|1P6G|O Chain O, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 88 | Back alignment and structure |
>gi|157829661|pdb|1A32|A Chain A, Ribosomal Protein S15 From Bacillus Stearothermophilus Length = 88 | Back alignment and structure |
>gi|118138067|pdb|2I2P|O Chain O, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 88 | Back alignment and structure |
>gi|116667424|pdb|2GY9|O Chain O, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 86 | Back alignment and structure |
>gi|6137692|pdb|1QD7|H Chain H, Partial Model For 30s Ribosomal Subunit Length = 85 | Back alignment and structure |
>gi|10835599|pdb|1FJG|O Chain O, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 89 | Back alignment and structure |
>gi|10120578|pdb|1FKA|O Chain O, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 89 | Back alignment and structure |
>gi|14278544|pdb|1I94|O Chain O, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 88 | Back alignment and structure |
>gi|33357249|pdb|1KUQ|A Chain A, Crystal Structure Of T3c Mutant S15 Ribosomal Protein In Complex With 16s Rrna Length = 87 | Back alignment and structure |
>gi|11514243|pdb|1G1X|B Chain B, Structure Of Ribosomal Proteins S15, S6, S18, And 16s Ribosomal Rna Length = 88 | Back alignment and structure |
>gi|11513521|pdb|1F7Y|A Chain A, The Crystal Structure Of Two Uucg Loops Highlights The Role Played By 2'-Hydroxyl Groups In Its Unusual Stability Length = 89 | Back alignment and structure |
>gi|7546270|pdb|1DK1|A Chain A, Detailed View Of A Key Element Of The Ribosome Assembly: Crystal Structure Of The S15-Rrna Complex Length = 86 | Back alignment and structure |
gi|188036216|pdb|3BBN|O Chain O, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. Length = 90 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
3ofo_O | 88 | 30S ribosomal protein S15; protein biosynthesis, riboso | 7e-25 | |
3i1m_O | 89 | 30S ribosomal protein S15; ribosome structure, protein- | 2e-24 | |
1a32_A | 88 | Ribosomal protein S15; multiwavelength anomalous diffra | 2e-23 | |
2vqe_O | 89 | 30S ribosomal protein S15; tRNA-binding, rRNA-binding, | 6e-23 | |
3bbn_O | 90 | Ribosomal protein S15; small ribosomal subunit, spinach | 4e-19 |
>3ofo_O 30S ribosomal protein S15; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_O 1p87_O 3ofp_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O ... Length = 88 | Back alignment and structure |
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Score = 107 bits (269), Expect = 7e-25 Identities = 41/88 (46%), Positives = 58/88 (65%) Query: 2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLIS 61 S++ E +++ E+ DTGS EVQVA+ T +I +L HF KKD +S+ GL R++S Sbjct: 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVS 60 Query: 62 LRSSLLKYLERKDVERYKRLVQSLKLRR 89 R LL YL+RKDV RY +L++ L LRR Sbjct: 61 QRRKLLDYLKRKDVARYTQLIERLGLRR 88 |
>3i1m_O 30S ribosomal protein S15; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O 3i1q_O 3i1s_O 3i1z_O 3i21_O ... Length = 89 | Back alignment and structure |
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>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Bacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H Length = 88 | Back alignment and structure |
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>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ... Length = 89 | Back alignment and structure |
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>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 90 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
2vqe_O | 89 | 30S ribosomal protein S15; tRNA-binding, rRNA-binding, | 100.0 | |
3ofo_O | 88 | 30S ribosomal protein S15; protein biosynthesis, riboso | 100.0 | |
1a32_A | 88 | Ribosomal protein S15; multiwavelength anomalous diffra | 100.0 | |
3bbn_O | 90 | Ribosomal protein S15; small ribosomal subunit, spinach | 99.97 | |
3jyv_O | 84 | 40S ribosomal protein S13; eukaryotic ribosome, RACK1 p | 98.03 |
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ... | Back alignment and structure |
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Probab=100.00 E-value=4.1e-38 Score=230.28 Aligned_cols=88 Identities=50% Similarity=0.753 Sum_probs=87.7 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 98888999999999545888788899999997799999999999778413527789999997899999998409999999 Q gi|254780785|r 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR 80 (89) Q Consensus 1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~ 80 (89) |++++++|+++|++||+||+||||||||||+||+||.+|++|++.||||++|+|||.+||++|++||+||+++|+++|.+ T Consensus 1 m~~~~~~k~~ii~~f~~~~~DtGS~evQIA~LT~rI~~Lt~Hlk~~kkD~~srrgL~~lv~kRrklL~YLr~~d~~~Y~~ 80 (89) T 2vqe_O 1 MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRA 80 (89) T ss_dssp -CCCHHHHHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 99889999999999768999879899999999999999999998778751109999999999999999998659999999 Q ss_pred HHHHHCCC Q ss_conf 99983689 Q gi|254780785|r 81 LVQSLKLR 88 (89) Q Consensus 81 ~i~~LglR 88 (89) +|++|||| T Consensus 81 vi~~LglR 88 (89) T 2vqe_O 81 LIEKLGIR 88 (89) T ss_dssp HHHHHTCC T ss_pred HHHHHCCC T ss_conf 99982899 |
>3ofo_O 30S ribosomal protein S15; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_O 1p87_O 3ofp_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O ... | Back alignment and structure |
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>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H | Back alignment and structure |
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>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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>3jyv_O 40S ribosomal protein S13; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1ysh_E 1s1h_O | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | |||
d1vs5o1 | 88 | a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia co | 1e-23 | |
d1a32a_ | 85 | a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothe | 2e-22 | |
d1kuqa_ | 84 | a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophil | 4e-22 |
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]} Length = 88 | Back information, alignment and structure |
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class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: Ribosomal protein S15 domain: Ribosomal protein S15 species: Escherichia coli [TaxId: 562] Score = 102 bits (255), Expect = 1e-23 Identities = 42/88 (47%), Positives = 58/88 (65%) Query: 2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLIS 61 S++ E +++ E+ DTGS EVQVA+ T +I +L HF KKD +S+ GL R++S Sbjct: 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVS 60 Query: 62 LRSSLLKYLERKDVERYKRLVQSLKLRR 89 R LL YL+RKDV RY RL++ L LRR Sbjct: 61 QRRKLLDYLKRKDVARYTRLIERLGLRR 88 |
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]} Length = 85 | Back information, alignment and structure |
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>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]} Length = 84 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
d1vs5o1 | 88 | Ribosomal protein S15 {Escherichia coli [TaxId: 562]} | 100.0 | |
d1a32a_ | 85 | Ribosomal protein S15 {Bacillus stearothermophilus [Tax | 100.0 | |
d1kuqa_ | 84 | Ribosomal protein S15 {Thermus thermophilus [TaxId: 274 | 100.0 |
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: S15/NS1 RNA-binding domain superfamily: S15/NS1 RNA-binding domain family: Ribosomal protein S15 domain: Ribosomal protein S15 species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=1.3e-37 Score=226.25 Aligned_cols=88 Identities=48% Similarity=0.728 Sum_probs=87.1 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 88889999999995458887888999999977999999999997784135277899999978999999984099999999 Q gi|254780785|r 2 SITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKRL 81 (89) Q Consensus 2 ~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~~ 81 (89) |+++++|+++|++||+||+||||||||||+||+||.+|++||+.||||++|+|||.+||++|++||+||+++|+++|.++ T Consensus 1 ~l~~~~k~~ii~~~~~~~~DtGS~evQiA~lT~rI~~Lt~Hl~~~kKD~~s~rgL~~lv~kRkklL~YL~~~d~~~Y~~v 80 (88) T d1vs5o1 1 SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRL 80 (88) T ss_dssp CCCHHHHHHHHHHHCSSSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCCCTTHHHHHHHHHHHHHHHHHHHTTCHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 98779999999998689998788579898779999999999987665410399999999999999999986599999999 Q ss_pred HHHHCCCC Q ss_conf 99836899 Q gi|254780785|r 82 VQSLKLRR 89 (89) Q Consensus 82 i~~LglRk 89 (89) |++||||| T Consensus 81 i~~LgLrk 88 (88) T d1vs5o1 81 IERLGLRR 88 (88) T ss_dssp HTTTTCCC T ss_pred HHHHCCCC T ss_conf 99958999 |
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter | ||
2vqe_O_ | 89 | (O:) 30S ribosomal protein S15; tRNA-binding, rRNA | 1e-23 | |
3i1m_O_ | 89 | (O:) 30S ribosomal protein S15; ribosome structure | 2e-23 | |
3bbn_O_ | 90 | (O:) Ribosomal protein S15; small ribosomal subuni | 4e-20 | |
1a32_A_20-88 | 69 | (A:20-88) Ribosomal protein S15; multiwavelength a | 3e-18 | |
3jyv_O_ | 84 | (O:) 40S ribosomal protein S13; eukaryotic ribosom | 7e-16 |
>2vqe_O (O:) 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}Length = 89 | Back alignment and structure |
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Score = 103 bits (258), Expect = 1e-23 Identities = 44/88 (50%), Positives = 62/88 (70%) Query: 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLI 60 M IT E K+++++E+A PGDTGS EVQVA+ T RI L+EH K KKD +S GL ++ Sbjct: 1 MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMV 60 Query: 61 SLRSSLLKYLERKDVERYKRLVQSLKLR 88 R LL+YL+R+D ERY+ L++ L +R Sbjct: 61 GQRRRLLRYLQREDPERYRALIEKLGIR 88 |
>3i1m_O (O:) 30S ribosomal protein S15; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O 3i1q_O 3i1s_O 3i1z_O 3i21_O ...Length = 89 | Back alignment and structure |
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>3bbn_O (O:) Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 90 | Back alignment and structure |
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>1a32_A (A:20-88) Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Bacillus stearothermophilus}Length = 69 | Back alignment and structure |
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>3jyv_O (O:) 40S ribosomal protein S13; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1ysh_E 1s1h_OLength = 84 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 89 | 30S ribosomal protein S15 [Candidatus Liberibacter asia | ||
3i1m_O_ | 89 | 30S ribosomal protein S15; ribosome structure, pro | 100.0 | |
2vqe_O_ | 89 | 30S ribosomal protein S15; tRNA-binding, rRNA-bind | 100.0 | |
3bbn_O_ | 90 | Ribosomal protein S15; small ribosomal subunit, sp | 100.0 | |
1a32_A_20-88 | 69 | Ribosomal protein S15; multiwavelength anomalous d | 99.97 | |
3jyv_O_ | 84 | 40S ribosomal protein S13; eukaryotic ribosome, RA | 99.91 |
>3i1m_O (O:) 30S ribosomal protein S15; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O 3i1q_O 3i1s_O 3i1z_O 3i21_O ... | Back alignment and structure |
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Probab=100.00 E-value=2e-37 Score=227.29 Aligned_cols=89 Identities=47% Similarity=0.724 Sum_probs=88.5 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 98888999999999545888788899999997799999999999778413527789999997899999998409999999 Q gi|254780785|r 1 MSITLERKRELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLKYLERKDVERYKR 80 (89) Q Consensus 1 m~~~~~~k~~~i~~f~~~~~DtGS~evQIA~lT~rI~~L~~Hl~~~kKD~~s~rgL~~lv~kRkklL~YLk~~d~~~Y~~ 80 (89) ||+++++|+++|++|++||+||||||||||+||+||.+|++||+.||||++|+|||.++|++|++||+||+++|+++|.+ T Consensus 1 M~i~~~~k~~~i~~~~~~~~DtGS~evQIA~LT~rI~~L~~Hl~~~kkD~~s~rgL~~lv~kRrklL~YLr~~d~~~Y~~ 80 (89) T 3i1m_O 1 MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ 80 (89) T ss_dssp -CCCHHHHHHHHHHHSSSTTCTTCHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH T ss_conf 99878999999999768999878889999988999999999998774440009999999999999999998669999999 Q ss_pred HHHHHCCCC Q ss_conf 999836899 Q gi|254780785|r 81 LVQSLKLRR 89 (89) Q Consensus 81 ~i~~LglRk 89 (89) +|++||||| T Consensus 81 ~i~~Lglrk 89 (89) T 3i1m_O 81 LIERLGLRR 89 (89) T ss_dssp HHHHHTCCC T ss_pred HHHHHCCCC T ss_conf 999958999 |
>2vqe_O (O:) 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} | Back alignment and structure |
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>3bbn_O (O:) Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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>1a32_A (A:20-88) Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Bacillus stearothermophilus} | Back alignment and structure |
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>3jyv_O (O:) 40S ribosomal protein S13; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1ysh_E 1s1h_O | Back alignment and structure |
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