254780817
preprotein translocase subunit SecB
GeneID in NCBI database: | 8209823 | Locus tag: | CLIBASIA_03540 |
Protein GI in NCBI database: | 254780817 | Protein Accession: | YP_003065230.1 |
Gene range: | -(437917, 438375) | Protein Length: | 152aa |
Gene description: | preprotein translocase subunit SecB | ||
COG prediction: | [U] Preprotein translocase subunit SecB | ||
KEGG prediction: | secB; preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB | ||
SEED prediction: | Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) | ||
Pathway involved in KEGG: | Protein export [PATH:las03060]
Bacterial secretion system [PATH:las03070] | ||
Subsystem involved in SEED: | Glutaredoxins | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | |||
148251775 | 162 | preprotein translocase subunit SecB [Bradyrhizobium sp. | 1 | 1e-34 | |
146337370 | 162 | preprotein translocase subunit SecB [Bradyrhizobium sp. | 1 | 1e-34 | |
49473775 | 158 | preprotein translocase subunit SecB [Bartonella quintan | 1 | 2e-34 | |
92115748 | 159 | preprotein translocase subunit SecB [Nitrobacter hambur | 1 | 2e-34 | |
163867400 | 158 | preprotein translocase subunit SecB [Bartonella triboco | 1 | 4e-34 | |
121601951 | 159 | preprotein translocase subunit SecB [Bartonella bacilli | 1 | 6e-34 | |
325291459 | 160 | Preprotein translocase subunit SecB [Agrobacterium sp. | 1 | 8e-34 | |
319898293 | 158 | protein-export protein SecB [Bartonella clarridgeiae 73 | 1 | 9e-34 | |
90421822 | 164 | preprotein translocase subunit SecB [Rhodopseudomonas p | 1 | 1e-33 | |
319405012 | 158 | protein-export protein SecB [Bartonella sp. AR 15-3] Le | 1 | 1e-33 |
>gi|148251775|ref|YP_001236360.1| preprotein translocase subunit SecB [Bradyrhizobium sp. BTAi1] Length = 162 | Back alignment and organism information |
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Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 96/138 (69%), Gaps = 1/138 (0%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 E +L QYIKD SFE+PNAP Q Q P I I + V AN ++ +F+V L+ Sbjct: 10 EAAPPPQLNVLAQYIKDLSFENPNAPQSLAP-QGQPPQINIQINVGANALADTEFEVTLT 68 Query: 62 FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121 + +A++ +V+F EL Y G+ R+++ PQEH+S +L +ECP+LLFPF R+I++N++RDG Sbjct: 69 IEGKAESGTQVMFSFELVYGGVFRLVNVPQEHLSPMLLIECPRLLFPFAREIVANSVRDG 128 Query: 122 GFPPLVIDTIDFLKLFQQ 139 GFPPL++D +DF+ L++Q Sbjct: 129 GFPPLMLDPVDFVSLYRQ 146 |
Species: Bradyrhizobium sp. BTAi1 Genus: Bradyrhizobium Family: Bradyrhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|146337370|ref|YP_001202418.1| preprotein translocase subunit SecB [Bradyrhizobium sp. ORS278] Length = 162 | Back alignment and organism information |
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>gi|49473775|ref|YP_031817.1| preprotein translocase subunit SecB [Bartonella quintana str. Toulouse] Length = 158 | Back alignment and organism information |
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>gi|92115748|ref|YP_575477.1| preprotein translocase subunit SecB [Nitrobacter hamburgensis X14] Length = 159 | Back alignment and organism information |
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>gi|163867400|ref|YP_001608595.1| preprotein translocase subunit SecB [Bartonella tribocorum CIP 105476] Length = 158 | Back alignment and organism information |
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>gi|121601951|ref|YP_989545.1| preprotein translocase subunit SecB [Bartonella bacilliformis KC583] Length = 159 | Back alignment and organism information |
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>gi|325291459|ref|YP_004277323.1| Preprotein translocase subunit SecB [Agrobacterium sp. H13-3] Length = 160 | Back alignment and organism information |
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>gi|319898293|ref|YP_004158386.1| protein-export protein SecB [Bartonella clarridgeiae 73] Length = 158 | Back alignment and organism information |
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>gi|90421822|ref|YP_530192.1| preprotein translocase subunit SecB [Rhodopseudomonas palustris BisB18] Length = 164 | Back alignment and organism information |
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>gi|319405012|emb|CBI78621.1| protein-export protein SecB [Bartonella sp. AR 15-3] Length = 158 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
PRK05751 | 156 | PRK05751, PRK05751, preprotein translocase subunit SecB | 2e-44 | |
COG1952 | 157 | COG1952, SecB, Preprotein translocase subunit SecB [Int | 3e-37 | |
TIGR00809 | 140 | TIGR00809, secB, protein-export chaperone SecB | 4e-27 | |
cd00557 | 131 | cd00557, Translocase_SecB, Preprotein translocase subun | 5e-20 | |
PRK13031 | 149 | PRK13031, PRK13031, preprotein translocase subunit SecB | 1e-11 | |
pfam02556 | 147 | pfam02556, SecB, Preprotein translocase subunit SecB | 1e-41 |
>gnl|CDD|180234 PRK05751, PRK05751, preprotein translocase subunit SecB; Validated | Back alignment and domain information |
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>gnl|CDD|32135 COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion] | Back alignment and domain information |
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>gnl|CDD|129891 TIGR00809, secB, protein-export chaperone SecB | Back alignment and domain information |
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>gnl|CDD|29643 cd00557, Translocase_SecB, Preprotein translocase subunit SecB | Back alignment and domain information |
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>gnl|CDD|106068 PRK13031, PRK13031, preprotein translocase subunit SecB; Provisional | Back alignment and domain information |
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>gnl|CDD|145603 pfam02556, SecB, Preprotein translocase subunit SecB | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
PRK05751 | 147 | preprotein translocase subunit SecB; Validated | 100.0 | |
PRK13031 | 149 | preprotein translocase subunit SecB; Provisional | 100.0 | |
pfam02556 | 147 | SecB Preprotein translocase subunit SecB. This family c | 100.0 | |
COG1952 | 157 | SecB Preprotein translocase subunit SecB [Intracellular | 100.0 | |
cd00557 | 131 | Translocase_SecB Preprotein translocase subunit SecB. S | 100.0 | |
TIGR00809 | 146 | secB protein-export chaperone SecB; InterPro: IPR003708 | 99.94 |
>PRK05751 preprotein translocase subunit SecB; Validated | Back alignment and domain information |
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>PRK13031 preprotein translocase subunit SecB; Provisional | Back alignment and domain information |
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>pfam02556 SecB Preprotein translocase subunit SecB | Back alignment and domain information |
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>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion] | Back alignment and domain information |
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>cd00557 Translocase_SecB Preprotein translocase subunit SecB | Back alignment and domain information |
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>TIGR00809 secB protein-export chaperone SecB; InterPro: IPR003708 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
1qyn_A | 153 | Crystal Structure Of Secb From Escherichia Coli Len | 2e-35 | |
1fx3_A | 169 | Crystal Structure Of H. Influenzae Secb Length = 16 | 1e-30 |
>gi|40889477|pdb|1QYN|A Chain A, Crystal Structure Of Secb From Escherichia Coli Length = 153 | Back alignment and structure |
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 + + F I Y KD SFE+PNAPH F ++ QP +K+++ ++ ++ ++V+L Sbjct: 4 QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61 Query: 62 FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121 + A ++ F E+ GI I ++ L CP +LFP+ R+ I++ + G Sbjct: 62 VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121 Query: 122 GFPPLVIDTIDFLKLFQQEKSLIKNK 147 FP L + ++F LF + Sbjct: 122 TFPQLNLAPVNFDALFMNYLQQQAGE 147 |
gi|12084673|pdb|1FX3|A Chain A, Crystal Structure Of H. Influenzae Secb Length = 169 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
1qyn_A | 153 | Protein-export protein SECB; tetramer, greek KEY beta s | 2e-30 | |
1fx3_A | 169 | SECB, protein-export protein SECB; protein trasnport, t | 5e-28 |
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1 Length = 153 | Back alignment and structure |
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Score = 126 bits (319), Expect = 2e-30 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 + + F I Y KD SFE+PNAPH F ++ QP +K+++ ++ ++ ++V+L Sbjct: 4 QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61 Query: 62 FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121 + A ++ F E+ GI I ++ L CP +LFP+ R+ I++ + G Sbjct: 62 VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121 Query: 122 GFPPLVIDTIDFLKLFQQEK 141 FP L + ++F LF Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141 |
>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} SCOP: d.33.1.1 PDB: 1ozb_A Length = 169 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
1qyn_A | 153 | Protein-export protein SECB; tetramer, greek KEY beta s | 100.0 | |
1fx3_A | 169 | SECB, protein-export protein SECB; protein trasnport, t | 100.0 |
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=327.04 Aligned_cols=148 Identities=28% Similarity=0.545 Sum_probs=139.3 Q ss_pred CCCC--CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE Q ss_conf 9831--13010123013011103788716776431015841588865121214654057999984046766543012577 Q gi|254780817|r 1 MEKK--QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL 78 (152) Q Consensus 1 M~~~--~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei 78 (152) |.++ .+++|+|+++||||||||+|++|++|. .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|+ T Consensus 1 Mse~~~~~~~f~I~~~YiKDlSfE~P~ap~~f~--~~~~p~~~~~v~i~~~~l~~~~~EV~L~l~~~a~~~~~~~f~vEl 78 (153) T 1qyn_A 1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQ--KDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV 78 (153) T ss_dssp --------CEEEEEEEEEEEEEEECTTHHHHTT--SCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE T ss_conf 986556786489887898502543899815636--466984378883463044786399999999998258816999999 Q ss_pred EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 546899975887103444666304553417899999999973899886605539899999999999864201 Q gi|254780817|r 79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL 150 (152) Q Consensus 79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~ 150 (152) +|||||.|.+.++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++|++++++. T Consensus 79 ~yagif~i~~~~~e~~~~illi~~P~~lfPy~R~ii~~l~~~~GFppl~L~pIdF~~LY~~~~~q~~~~~~~ 150 (153) T 1qyn_A 79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTE 150 (153) T ss_dssp EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC-------- T ss_pred EEEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 988999993062767657677338388878999999999984699985678758999999999998764101 |
>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} SCOP: d.33.1.1 PDB: 1ozb_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
152 | preprotein translocase subunit SecB [Candidatus Liberib | |||
d1qyna_ | 134 | d.33.1.1 (A:) Bacterial protein-export protein SecB {Es | 5e-27 | |
d1ozba_ | 144 | d.33.1.1 (A:) Bacterial protein-export protein SecB {Ha | 4e-25 |
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Escherichia coli [TaxId: 562]} Length = 134 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: SecB-like superfamily: SecB-like family: Bacterial protein-export protein SecB domain: Bacterial protein-export protein SecB species: Escherichia coli [TaxId: 562] Score = 114 bits (286), Expect = 5e-27 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 9 FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68 F I Y KD SFE+PNAPH F ++ QP +K+++ ++ ++ ++V+L + A Sbjct: 3 FQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASL 60 Query: 69 NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128 ++ F E+ GI I ++ L CP +LFP+ R+ I++ + G FP L + Sbjct: 61 GEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNL 120 Query: 129 DTIDFLKLFQQE 140 ++F LF Sbjct: 121 APVNFDALFMNY 132 |
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Haemophilus influenzae [TaxId: 727]} Length = 144 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
d1ozba_ | 144 | Bacterial protein-export protein SecB {Haemophilus infl | 100.0 | |
d1qyna_ | 134 | Bacterial protein-export protein SecB {Escherichia coli | 100.0 |
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: SecB-like superfamily: SecB-like family: Bacterial protein-export protein SecB domain: Bacterial protein-export protein SecB species: Haemophilus influenzae [TaxId: 727] Probab=100.00 E-value=0 Score=313.89 Aligned_cols=141 Identities=27% Similarity=0.575 Sum_probs=132.3 Q ss_pred CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCCCCEEEEEEEEEEE Q ss_conf 01012301301110378871677643101584158886512121465405799998404676--6543012577546899 Q gi|254780817|r 7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN--NDKVIFRLELAYSGIL 84 (152) Q Consensus 7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~--~~~~~f~~Ei~yagif 84 (152) |+|+|+++||||||||+||+|.+|. .+|.|++++++|+++++++++.|||.|+++++++. +++++|++|++|||+| T Consensus 1 P~f~I~~~YiKDlSFE~Pn~p~~f~--~~~~p~~~~~i~i~~~~l~~~~~Ev~l~l~~~~~~~~~~~~~F~~e~~yagif 78 (144) T d1ozba_ 1 PVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVF 78 (144) T ss_dssp CEEEEEEEEEEEEEEECTTTTGGGG--SCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEE T ss_pred CCEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEE T ss_conf 9604867887612333899825645--35588557888632442477741799999997413455553189987589999 Q ss_pred EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 97588710344466630455341789999999997389988660553989999999999986420 Q gi|254780817|r 85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEG 149 (152) Q Consensus 85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~ 149 (152) .+.+.++++++++++|+||++||||||++|++++++|||||++|+||||++||++|++|++++++ T Consensus 79 ~i~~~~~~~~~~illi~~P~~lFP~~R~ii~~l~~~gGFppl~l~pIdF~~ly~~~~~q~~~~~~ 143 (144) T d1ozba_ 79 TISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENA 143 (144) T ss_dssp EEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSHHHHHHHHHHHHHHSC T ss_pred EECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 95489878863567406728888899999999998469998467875899999999999887605 |
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 152 | preprotein translocase subunit SecB [Candidatus Li | ||
1qyn_A_ | 153 | (A:) Protein-export protein SECB; tetramer, greek | 4e-36 | |
1fx3_A_ | 169 | (A:) SECB, protein-export protein SECB; protein tr | 4e-35 |
>1qyn_A (A:) Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli}Length = 153 | Back alignment and structure |
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Score = 144 bits (365), Expect = 4e-36 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 + + F I Y KD SFE+PNAPH F ++ QP +K+++ ++ ++ ++V+L Sbjct: 4 QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61 Query: 62 FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121 + A ++ F E+ GI I ++ L CP +LFP+ R+ I++ + G Sbjct: 62 VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121 Query: 122 GFPPLVIDTIDFLKLFQQEK 141 FP L + ++F LF Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141 |
>1fx3_A (A:) SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae}Length = 169 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 152 | preprotein translocase subunit SecB [Candidatus Liberib | ||
1qyn_A_ | 153 | Protein-export protein SECB; tetramer, greek KEY b | 100.0 | |
1fx3_A_ | 169 | SECB, protein-export protein SECB; protein trasnpo | 100.0 |
>1qyn_A (A:) Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=298.40 Aligned_cols=149 Identities=28% Similarity=0.540 Sum_probs=140.8 Q ss_pred CCCCC--CCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE Q ss_conf 98311--3010123013011103788716776431015841588865121214654057999984046766543012577 Q gi|254780817|r 1 MEKKQ--KQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL 78 (152) Q Consensus 1 M~~~~--~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei 78 (152) |.+.. .|.|.|.++|+||||||+||+|.+| ...|.|++++++++++++++++.|||.|+++++++.++++.|++|+ T Consensus 1 m~e~~~~~~~~~i~~~Y~Kd~SfE~P~~p~~f--~~~~~p~i~i~i~v~~~~~~e~~~eV~L~i~v~a~~~~~~~F~iev 78 (153) T 1qyn_A 1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV 78 (153) T ss_dssp --------CEEEEEEEEEEEEEEECTTHHHHT--TSCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHH--CCCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE T ss_conf 98655678708888789850354489981453--6467984478883353034686499999999997268834899999 Q ss_pred EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 5468999758871034446663045534178999999999738998866055398999999999998642014 Q gi|254780817|r 79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM 151 (152) Q Consensus 79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~ 151 (152) +|+|+|.+.|+++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++.. T Consensus 79 ~~~GiF~i~~i~~e~~~~~l~i~~p~iLfPY~R~~Vs~lt~~~gfppl~LppINF~~ly~~~~~~~~~~~~~~ 151 (153) T 1qyn_A 79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEE 151 (153) T ss_dssp EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC--------- T ss_pred EEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 9999999737707778777863383888789999999999846999856787589999999999987641002 |
>1fx3_A (A:) SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} | Back alignment and structure |
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