254780817

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 96/138 (69%), Gaps = 1/138 (0%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           E        +L QYIKD SFE+PNAP      Q Q P I I + V AN ++  +F+V L+
Sbjct: 10  EAAPPPQLNVLAQYIKDLSFENPNAPQSLAP-QGQPPQINIQINVGANALADTEFEVTLT 68

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
            + +A++  +V+F  EL Y G+ R+++ PQEH+S +L +ECP+LLFPF R+I++N++RDG
Sbjct: 69  IEGKAESGTQVMFSFELVYGGVFRLVNVPQEHLSPMLLIECPRLLFPFAREIVANSVRDG 128

Query: 122 GFPPLVIDTIDFLKLFQQ 139
           GFPPL++D +DF+ L++Q
Sbjct: 129 GFPPLMLDPVDFVSLYRQ 146

Species: Bradyrhizobium sp. BTAi1
Genus: Bradyrhizobium
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 96/138 (69%), Gaps = 1/138 (0%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           E        +L QYIKD SFE+PNAP      Q Q P I I + V AN ++  +++V L+
Sbjct: 10  EAAPPPQLNVLAQYIKDLSFENPNAPQSLAP-QGQPPQINIQINVGANALAETEYEVTLT 68

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
            + +A++  +V+F  EL Y G+ R+++ PQEH+S +L +ECP+LLFPF R+I++N++RDG
Sbjct: 69  IEGKAESGSQVMFSFELVYGGVFRLVNVPQEHLSPMLLIECPRLLFPFAREIVANSVRDG 128

Query: 122 GFPPLVIDTIDFLKLFQQ 139
           GFPPL++D +DF+ L++Q
Sbjct: 129 GFPPLMLDPVDFVSLYRQ 146

Species: Bradyrhizobium sp. ORS278
Genus: Bradyrhizobium
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
           F +L QY+KDFSFE+P+AP      + + P I IN+ VNAN I   ++DV+LS  ++A +
Sbjct: 15  FAVLTQYLKDFSFENPSAPRSLRP-REKAPQIDININVNANPIGDDNYDVVLSLSVKAND 73

Query: 69  NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128
           N++ +F +EL Y G+  I D PQEHI  ++F+ECP+LLFPF RQIIS+  ++GGFPPL I
Sbjct: 74  NNETLFHVELIYGGVFHIKDIPQEHIMPLVFIECPRLLFPFARQIISDATQNGGFPPLWI 133

Query: 129 DTIDFLKLFQQ 139
           D IDF  LFQ+
Sbjct: 134 DPIDFAALFQK 144

Species: Bartonella quintana
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 99/138 (71%), Gaps = 1/138 (0%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           E        +L QY KD SFE+PNAP      Q + P+I + + VNAN ++  +F+V L+
Sbjct: 10  EGAPSPQLNVLAQYTKDLSFENPNAPSSLAP-QQKPPSISVQINVNANNVAQDEFEVTLT 68

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
            + +A++NDK++FR ELAY+G+ RI++ PQE++  ++ +ECP+LLFPF R+II+  +RDG
Sbjct: 69  VEGKAEHNDKLMFRFELAYAGLFRIVNVPQENLPPLVMIECPRLLFPFAREIIATAVRDG 128

Query: 122 GFPPLVIDTIDFLKLFQQ 139
           GFPPL++D +DF+ +F+Q
Sbjct: 129 GFPPLMLDPVDFVGMFRQ 146

Species: Nitrobacter hamburgensis
Genus: Nitrobacter
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  147 bits (372), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
           F +L QY+KD SFE+P APH     + + P I IN+ VNAN I   ++DV+LS  ++A +
Sbjct: 15  FAVLTQYLKDLSFENPGAPHSL-RAREKSPQIDININVNANPIGDDNYDVVLSLSVKAND 73

Query: 69  NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128
           N + +F +EL Y G+  + + PQEHI  ++F+ECP+LLFPF RQIIS+  ++GGFPPL I
Sbjct: 74  NTETLFHVELIYGGVFHLKNIPQEHIMPLVFIECPRLLFPFARQIISDATQNGGFPPLWI 133

Query: 129 DTIDFLKLFQQ 139
           D IDF  LFQ+
Sbjct: 134 DPIDFAALFQK 144

Species: Bartonella tribocorum
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/136 (48%), Positives = 97/136 (71%), Gaps = 1/136 (0%)

Query: 5   QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDI 64
           +K  F +L QY+KD SFE+PNAP      + + P I IN+ V+AN +   ++DV+LS  +
Sbjct: 12  EKPIFAVLTQYLKDLSFENPNAPRSLRP-REKSPKIDININVDANPVGDDNYDVVLSLSV 70

Query: 65  EAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFP 124
           +A +++ ++F +EL Y G+  I + PQEHI  ++F+ECP+LLFPFVRQIIS+  ++GGFP
Sbjct: 71  KADDDNDILFHVELVYGGVFHIQNIPQEHIMPLVFIECPRLLFPFVRQIISDATQNGGFP 130

Query: 125 PLVIDTIDFLKLFQQE 140
           PL ID IDF+ LFQ+ 
Sbjct: 131 PLWIDPIDFVTLFQRR 146

Species: Bartonella bacilliformis
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  146 bits (369), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 97/133 (72%), Gaps = 1/133 (0%)

Query: 8   AFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAK 67
           +  IL QYIKD SFE+P AP      ++  P+I INV VNAN ISG+DFDV+L+ + EAK
Sbjct: 14  SLNILTQYIKDLSFENPGAPRSL-QARDNAPSININVNVNANPISGSDFDVVLTLNAEAK 72

Query: 68  NNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLV 127
           + DKV+F  EL Y G+ RI   PQEH+  +LF+ECP+LLFPF RQII++  R+GGFPPL+
Sbjct: 73  DGDKVLFAAELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIADVTRNGGFPPLM 132

Query: 128 IDTIDFLKLFQQE 140
           ID IDF ++F Q 
Sbjct: 133 IDPIDFAQMFSQR 145

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
           F +L QY+KDFSFE+PNAP      + + P I +N+ VNAN I   ++DVILS  ++ K+
Sbjct: 15  FAVLTQYLKDFSFENPNAPRSL-RPREKAPQIDVNINVNANPIGDDNYDVILSLSVKTKD 73

Query: 69  NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128
           + +++F +EL Y GI  I + PQEH+  ++F+ECP+LLFPF RQIIS+  ++GGFPPL I
Sbjct: 74  DTEMLFHVELIYGGIFHIKNIPQEHVMPLVFIECPRLLFPFARQIISDATQNGGFPPLWI 133

Query: 129 DTIDFLKLFQQ 139
           D IDF  +FQ+
Sbjct: 134 DPIDFATMFQK 144

Species: Bartonella clarridgeiae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 96/138 (69%), Gaps = 1/138 (0%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           E  Q     +L QY KD SFE+PNAP      Q QQP+I I + V ANT++ ++F+V L+
Sbjct: 10  EAAQAPQLNVLAQYTKDLSFENPNAPASLAP-QAQQPSINIQINVTANTLADSEFEVTLA 68

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
            + +A N   +IF  EL Y+G+ RIL+ P+E++  ++ +ECP+LLFPF R+II+  +RDG
Sbjct: 69  IEGKADNAGSLIFSFELLYAGVFRILNVPKENLHPLVMIECPRLLFPFAREIIATAVRDG 128

Query: 122 GFPPLVIDTIDFLKLFQQ 139
           GFPPL++D +DF+ L++Q
Sbjct: 129 GFPPLMLDPVDFVGLYRQ 146

Species: Rhodopseudomonas palustris
Genus: Rhodopseudomonas
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
           F +L QY+KDFSFE+PNAP      + + P I +N+ VNAN I   ++DV+LS  ++ K+
Sbjct: 15  FAVLTQYLKDFSFENPNAPRSL-RPREKAPQIDVNINVNANPIGDDNYDVVLSLSVKTKD 73

Query: 69  NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128
           + +++F +EL Y GI  I + PQEH+  ++F+ECP+LLFPF RQIIS+  ++GGFPPL I
Sbjct: 74  DTEMLFHVELIYGGIFHIKNIPQEHVMPLVFIECPRLLFPFARQIISDATQNGGFPPLWI 133

Query: 129 DTIDFLKLFQQ 139
           D IDF  +FQ+
Sbjct: 134 DPIDFATMFQK 144

Species: Bartonella sp. AR 15-3
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  173 bits (440), Expect = 2e-44
 Identities = 52/138 (37%), Positives = 84/138 (60%), Gaps = 2/138 (1%)

Query: 5   QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDI 64
            +  F I   Y KD SFE+PNAP  F   +  QP + +N+  NAN ++   ++V+L+  +
Sbjct: 9   AQPQFQIQRIYTKDLSFENPNAPAIF--QEEWQPEVNLNLDTNANKLAEDVYEVVLTVTV 66

Query: 65  EAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFP 124
            AK  +K  F  E+  +GI  I + P+E ++ +L +ECP +LFP+ R+II++ +R GGFP
Sbjct: 67  TAKLGEKTAFLCEVQQAGIFTIRNIPEEQLAPLLGIECPNILFPYAREIIADLVRRGGFP 126

Query: 125 PLVIDTIDFLKLFQQEKS 142
           PL +  I+F  L++Q   
Sbjct: 127 PLNLAPINFDALYEQRLQ 144

Length = 156

 Score =  149 bits (378), Expect = 3e-37
 Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 2/147 (1%)

Query: 3   KKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSF 62
              + +F I   Y+KD SFE+PNAPH F   ++ QP + +++  NAN ++   F+V+L+ 
Sbjct: 7   PTGQPSFNIQRIYVKDLSFEAPNAPHIF--QKDWQPEVNLDLNTNANQLAENVFEVVLTV 64

Query: 63  DIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGG 122
            + AK  +K  F  E+  +GI RI   P+E ++ +L +ECP +LFP+ R++IS+    GG
Sbjct: 65  TVTAKLGEKTAFLCEVQQAGIFRIAGIPEEQMAHLLGIECPNILFPYARELISDLTARGG 124

Query: 123 FPPLVIDTIDFLKLFQQEKSLIKNKEG 149
           FPPL++  I+F  L+ Q  +  + +E 
Sbjct: 125 FPPLMLAPINFDALYAQRLAEQQAEEV 151

Length = 157

 Score =  116 bits (291), Expect = 4e-27
 Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
           F I   Y+KD SFE+PNAPH F    + +P + +++  N+  +S   ++V+L+  + A+ 
Sbjct: 7   FQIQRIYVKDLSFEAPNAPHIF--QLDWRPEVDLDLDTNSTQLSDDFYEVVLNITVTARL 64

Query: 69  NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128
            +   F  E+  +G+  I+    E ++  L V CP +LFP+ R+IIS+ ++ G FPPL +
Sbjct: 65  EEYTAFLCEVKQAGVFNIIGIESEQMAHCLGVHCPNMLFPYAREIISSCVQRGTFPPLNL 124

Query: 129 DTIDFLKLFQQEK 141
             ++F  L+ Q++
Sbjct: 125 APVNFDALYMQQQ 137

The archaeal Methanococcus jannaschii homolog MJ0357 has been shown (PubMed:14985117) to share many properties, including chaperone-like activity, and scores between trusted and noise. Length = 140

 Score = 92.3 bits (229), Expect = 5e-20
 Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGAD-FDVILSFDIEAK 67
             I   Y+KD SFE+PNAPH F   ++ +P + +++      +   + ++V+L+    AK
Sbjct: 1   LQIQRIYVKDISFEAPNAPHLF--QKDWKPRLNLDLDTEITQLKNDNKYEVVLNITAGAK 58

Query: 68  NND-KVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPL 126
               K  F  E+  +G+  I+    + ++  L + CP +LFP+ R++IS+      FPPL
Sbjct: 59  LEFAKSAFYCEVKQAGVFEIIGIEIDQMAHCLEINCPAILFPYARELISSITARATFPPL 118

Query: 127 VIDTIDFLKLF 137
            +  I+F  LF
Sbjct: 119 NLPPINFDALF 129

SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent polypeptides across the cytoplasmic membrane. SecB has been shown to function as export-specific molecular chaperone that selectively binds preproteins, maintains them in a translocation competent state and delivers them to SecA, the membrane-bound ATPase, that drives the translocation reaction. In solution, SecB exists as homotetramer, which is organized as a dimer of dimers.. Length = 131

 Score = 64.4 bits (156), Expect = 1e-11
 Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 1   MEKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNA-NTISGADFDVI 59
           M+++ +  F I   Y+KD SF  PN+   +    N +P +  +++V A        ++ +
Sbjct: 1   MDQQAQPQFQIQKVYVKDLSFSIPNSDKIW--TTNWKPELHTDLKVEATKLPEENTYETV 58

Query: 60  LSFDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119
           L+ +++ +N+  V F  E+  +GI  + +  +  I       CP +L+ + R+ IS+ + 
Sbjct: 59  LTLEVKVENDGMVAFEAEVKQAGIFTVANMQEAQIEHAKKAFCPNILYHYAREAISDLVI 118

Query: 120 DGGFPPLVIDTIDFLKLFQ 138
            GGFP L +  ++F  ++Q
Sbjct: 119 SGGFPQLCLSAVNFDAMYQ 137

Length = 149

 Score =  163 bits (416), Expect = 1e-41
 Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 2/136 (1%)

Query: 5   QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDI 64
            +  F I  QY+KD SFE+PNAP  F  ++  QP + + + VNA  ++   ++V+L+  +
Sbjct: 9   PQPQFQIQRQYVKDLSFENPNAPAIF--LEEWQPEVNVQLNVNARKLAENVYEVVLTVTV 66

Query: 65  EAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFP 124
            AKN +K  F +E+  +GI  I + P+E +   L +ECP +LFP+ R+IIS+  R GGFP
Sbjct: 67  TAKNEEKTAFLVEVKQAGIFTIRNVPEEQLHPFLGIECPNILFPYAREIISDLTRRGGFP 126

Query: 125 PLVIDTIDFLKLFQQE 140
           PL++  I+F  L++Q+
Sbjct: 127 PLMLAPINFDALYEQQ 142

This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm. Length = 147

Probab=100.00  E-value=0  Score=343.33  Aligned_cols=145  Identities=37%  Similarity=0.716  Sum_probs=139.8

Q ss_pred             CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf             13010123013011103788716776431015841588865121214654057999984046766543012577546899
Q gi|254780817|r    5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGIL   84 (152)
Q Consensus         5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif   84 (152)
T Consensus         1 ~~p~f~I~~qYiKDlSFE~Pnap~~f~--~~~~p~~~i~vdi~~~~l~~~~~EV~l~l~~~a~~~~~~~f~~El~yagif   78 (147)
T PRK05751          1 QQPQFQIQRIYTKDLSFENPNAPAIFQ--EEWQPEVNLNLDTNATKLAEDVYEVVLTVTVTAKNGEKTAFLCEVQQAGIF   78 (147)
T ss_pred             CCCEEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEEE
T ss_conf             997077510354303503899806753--266995469985064206898699999999997578836999998889999


Q ss_pred             EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             9758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r   85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM  151 (152)
Q Consensus        85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~  151 (152)
T Consensus        79 ~i~~~~~~~l~~~lli~cP~~lfP~aR~ii~~l~~~gGFppl~l~pIdF~~LY~~~~~q~~~~~~~~  145 (147)
T PRK05751         79 TIRNIPEEQLAPLLGIECPNILFPYAREIISDLVRRGGFPPLNLAPINFDALYEQRLQQQQAAAAAA  145 (147)
T ss_pred             EECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9778998998656600461665568999999999707999755686389999999999999853411

Probab=100.00  E-value=0  Score=343.26  Aligned_cols=147  Identities=24%  Similarity=0.560  Sum_probs=140.7

Q ss_pred             CCCCCCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCCCCCEEEEEE
Q ss_conf             983113010123013011103788716776431015841588865121214-6540579999840467665430125775
Q gi|254780817|r    1 MEKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTI-SGADFDVILSFDIEAKNNDKVIFRLELA   79 (152)
Q Consensus         1 M~~~~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l-~~~~~EV~l~l~~~ak~~~~~~f~~Ei~   79 (152)
T Consensus         1 m~~~~qp~f~I~~~YvKDlSFE~Pnap~~f~--~~~~P~i~i~v~v~~~~l~~~~~~EV~L~i~~~a~~~~~~~FlvEl~   78 (149)
T PRK13031          1 MDQQAQPQFQIQKVYVKDLSFSIPNSDKIWT--TNWKPELHTDLKVEATKLPEENTYETVLTLEVKVENDGMVAFEAEVK   78 (149)
T ss_pred             CCCCCCCCEEEEEEEEEECCCCCCCCCHHHC--CCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEE
T ss_conf             9966698368868986311554899804537--57899657998515202577982999999999997198789999984


Q ss_pred             EEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             4689997588710344466630455341789999999997389988660553989999999999986420
Q gi|254780817|r   80 YSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEG  149 (152)
Q Consensus        80 yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~  149 (152)
T Consensus        79 yaGiF~i~~~~e~~~~~~L~v~cP~iLFPyaR~iIsd~~~~gGFPpL~L~PInF~alY~q~~~~~ae~~q  148 (149)
T PRK13031         79 QAGIFTVANMQEAQIEHAKKAFCPNILYHYAREAISDLVISGGFPQLCLSAVNFDAMYQDSLKESADSKQ  148 (149)
T ss_pred             EEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             7569997689989988888504336567879999998874379986345873899999999999888704

Probab=100.00  E-value=0  Score=328.91  Aligned_cols=143  Identities=38%  Similarity=0.781  Sum_probs=135.0

Q ss_pred             CCCCC----CCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEE
Q ss_conf             98311----30101230130111037887167764310158415888651212146540579999840467665430125
Q gi|254780817|r    1 MEKKQ----KQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRL   76 (152)
Q Consensus         1 M~~~~----~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~   76 (152)
T Consensus         1 M~e~~~~~~~p~~~I~~~YiKDlSFE~Pnap~~f~--~~~~p~~~~~idi~~~~~~~~~~EV~l~l~~~~k~~~~~~f~~   78 (147)
T pfam02556         1 MSEENQAAPQPQFQIQRQYVKDLSFENPNAPAIFL--EEWQPEVNVQLNVNARKLAENVYEVVLTVTVTAKNEEKTAFLV   78 (147)
T ss_pred             CCCCCCCCCCCCEEEEHEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf             97334576799279403563303513899836755--5679954788611633747876999999999964788269999


Q ss_pred             EEEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             775468999758871034446663045534178999999999738998866055398999999999998
Q gi|254780817|r   77 ELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIK  145 (152)
Q Consensus        77 Ei~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~  145 (152)
T Consensus        79 El~yagif~i~~~~~~~l~~il~i~~P~~lFP~~R~ii~~l~~~gGFppl~l~pIdF~~Ly~~~~~q~~  147 (147)
T pfam02556        79 EVKQAGIFTIRNVPEEQLHPFLGIECPNILFPYAREIISDLTRRGGFPPLMLAPINFDALYEQQLAQQQ  147 (147)
T ss_pred             EEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             987899999768998999878865055765278999999999716999735687589999999997449

This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm.

Probab=100.00  E-value=0  Score=312.35  Aligned_cols=144  Identities=38%  Similarity=0.732  Sum_probs=138.5

Q ss_pred             CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf             13010123013011103788716776431015841588865121214654057999984046766543012577546899
Q gi|254780817|r    5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGIL   84 (152)
Q Consensus         5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif   84 (152)
T Consensus         9 ~qp~~~I~~~YvKDlSFE~P~aP~~f~--~~~~P~i~l~l~~~~~~l~e~~feVvL~itv~ak~~~~~~F~~Ev~qaGvF   86 (157)
T COG1952           9 GQPSFNIQRIYVKDLSFEAPNAPHIFQ--KDWQPEVNLDLNTNANQLAENVFEVVLTVTVTAKLGEKTAFLCEVQQAGIF   86 (157)
T ss_pred             CCCEEEEEEEEEEEEEEECCCCCHHHH--HCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEEEEEEE
T ss_conf             996476311263333230799966667--503976156205021326887269999999999708726899999875589


Q ss_pred             EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             975887103444666304553417899999999973899886605539899999999999864201
Q gi|254780817|r   85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL  150 (152)
Q Consensus        85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~  150 (152)
T Consensus        87 ~i~~i~~e~m~~~L~i~CP~iLFPYaR~~Is~~t~~ggFPpl~L~PInF~aly~~~~~e~~~~e~~  152 (157)
T COG1952          87 RIAGIPEEQMAHLLGIECPNILFPYARELISDLTARGGFPPLMLAPINFDALYAQRLAEQQAEEVA  152 (157)
T ss_pred             EECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             971788788665564368343517799999888632898960128727899999999999887543

Probab=100.00  E-value=0  Score=307.25  Aligned_cols=129  Identities=31%  Similarity=0.651  Sum_probs=123.0

Q ss_pred             CHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCC-CCEEEEEEEEEECCCCCC-CCCEEEEEEEEEEEEE
Q ss_conf             01230130111037887167764310158415888651212146-540579999840467665-4301257754689997
Q gi|254780817|r    9 FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTIS-GADFDVILSFDIEAKNND-KVIFRLELAYSGILRI   86 (152)
Q Consensus         9 ~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~-~~~~EV~l~l~~~ak~~~-~~~f~~Ei~yagif~i   86 (152)
T Consensus         1 f~i~~~YiKDlSFE~P~ap~~f~--~~~~P~i~v~~~~~~~~l~~~n~~EV~L~i~~~a~~~d~~~~F~~El~yaGiF~i   78 (131)
T cd00557           1 LQIQRIYVKDISFEAPNAPHLFQ--KDWKPRLNLDLDTEITQLKNDNKYEVVLNITAGAKLEFAKSAFYCEVKQAGVFEI   78 (131)
T ss_pred             CCEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEE
T ss_conf             94426887421533899805646--5679963589834630168897399999999999728882699998867779997


Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             58871034446663045534178999999999738998866055398999999
Q gi|254780817|r   87 LDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQ  139 (152)
Q Consensus        87 ~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~  139 (152)
T Consensus        79 ~~~~~e~~~~~L~i~cP~iLFPyaR~iIs~~t~~gGFppl~L~PInF~aly~n  131 (131)
T cd00557          79 IGIEIDQMAHCLEINCPAILFPYARELISSITARATFPPLNLPPINFDALFAN  131 (131)
T ss_pred             CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCC
T ss_conf             69998999888872071766178999999887337988733486089998468

SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent polypeptides across the cytoplasmic membrane. SecB has been shown to function as export-specific molecular chaperone that selectively binds preproteins, maintains them in a translocation competent state and delivers them to SecA, the membrane-bound ATPase, that drives the translocation reaction. In solution, SecB exists as homotetramer, which is organized as a dimer of dimers.

Probab=99.94  E-value=1.5e-26  Score=176.91  Aligned_cols=140  Identities=29%  Similarity=0.646  Sum_probs=131.0

Q ss_pred             CCCCCCHHHHEEEHHHCCCCCCHH-HHHHHHHCCCCEEEEEEEECCCCCCCC-EEEEEEEEEECCCCC-CCCCEEEEEEE
Q ss_conf             113010123013011103788716-776431015841588865121214654-057999984046766-54301257754
Q gi|254780817|r    4 KQKQAFTILNQYIKDFSFESPNAP-HCFFDIQNQQPTIKINVQVNANTISGA-DFDVILSFDIEAKNN-DKVIFRLELAY   80 (152)
Q Consensus         4 ~~~~~~~I~~qYIKDLSFE~P~ap-~~f~~~~~~~p~~~i~i~i~~~~l~~~-~~EV~l~l~~~ak~~-~~~~f~~Ei~y   80 (152)
T Consensus         2 ~~~p~~~~~~~~~~d~~~~~p~~p~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (146)
T TIGR00809         2 ELQPVFSIERLYVKDLSLEAPNAPSHLF--LLDWEPEVDLDLDTGSTQLGDDNLYEVVLNVTVTAKLEDEETLFLCEVKQ   79 (146)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCHHHH--HHCCCCCCCEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCC
T ss_conf             6540112233322110013667522445--42156642111012211024563246676667764036641211000000


Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             68999758871034446663045534178999999999738998866055398999999999998
Q gi|254780817|r   81 SGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIK  145 (152)
Q Consensus        81 agif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~  145 (152)
T Consensus        80 ~g~~~~~~~~~~~~~~~~~~~cp~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  144 (146)
T TIGR00809        80 AGVFNLAGLEGEQHPHLLGVHCPNLLFPYARELVSSLVSRGGFPPLNLAPVNFDALYHEYLQKQE  144 (146)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf             23133215772013455433110233256777775432024655100031212578888775530

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Recently, the tertiary structure of Haemophilus influenzae SecB (P44853 from SWISSPROT) was resolved by means of X-ray crystallography to 2.5A . The chaperone comprises four chains, forming a tetramer, each chain of which has a simple alpha+beta fold arrangement. While one binding site on the homotetramer recognises unfolded polypeptides by hydrophobic interactions, the second binds to SecA through the latter's C-terminal 22 residues.; GO: 0051082 unfolded protein binding, 0015031 protein transport, 0051262 protein tetramerization.

 Score =  126 bits (319), Expect = 2e-30
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           +   +  F I   Y KD SFE+PNAPH F   ++ QP +K+++   ++ ++   ++V+L 
Sbjct: 4   QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
             + A   ++  F  E+   GI  I       ++  L   CP +LFP+ R+ I++ +  G
Sbjct: 62  VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121

Query: 122 GFPPLVIDTIDFLKLFQQEK 141
            FP L +  ++F  LF    
Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141

 Score =  118 bits (297), Expect = 5e-28
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 4/142 (2%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
            ++Q+    I   Y+KD SFE+PN PH F   Q  +P +  ++      +    ++V+L+
Sbjct: 11  TEEQQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLN 68

Query: 62  FDIEA--KNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119
             +E   +++  V F  E+  +G+  I       ++  L  +CP +LFP+ R+++SN + 
Sbjct: 69  ISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVN 128

Query: 120 DGGFPPLVIDTIDFLKLFQQEK 141
            G FP L +  ++F  LF +  
Sbjct: 129 RGTFPALNLSPVNFDALFVEYM 150

Probab=100.00  E-value=0  Score=327.04  Aligned_cols=148  Identities=28%  Similarity=0.545  Sum_probs=139.3

Q ss_pred             CCCC--CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             9831--13010123013011103788716776431015841588865121214654057999984046766543012577
Q gi|254780817|r    1 MEKK--QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL   78 (152)
Q Consensus         1 M~~~--~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei   78 (152)
                      |.++  .+++|+|+++||||||||+|++|++|.  .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|+
T Consensus         1 Mse~~~~~~~f~I~~~YiKDlSfE~P~ap~~f~--~~~~p~~~~~v~i~~~~l~~~~~EV~L~l~~~a~~~~~~~f~vEl   78 (153)
T 1qyn_A            1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQ--KDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV   78 (153)
T ss_dssp             --------CEEEEEEEEEEEEEEECTTHHHHTT--SCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf             986556786489887898502543899815636--466984378883463044786399999999998258816999999


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             546899975887103444666304553417899999999973899886605539899999999999864201
Q gi|254780817|r   79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL  150 (152)
Q Consensus        79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~  150 (152)
                      +|||||.|.+.++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++|++++++.
T Consensus        79 ~yagif~i~~~~~e~~~~illi~~P~~lfPy~R~ii~~l~~~~GFppl~L~pIdF~~LY~~~~~q~~~~~~~  150 (153)
T 1qyn_A           79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTE  150 (153)
T ss_dssp             EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC--------
T ss_pred             EEEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             988999993062767657677338388878999999999984699985678758999999999998764101

Probab=100.00  E-value=0  Score=322.28  Aligned_cols=146  Identities=27%  Similarity=0.557  Sum_probs=135.1

Q ss_pred             CCCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCCCCEEEEEEEE
Q ss_conf             11301012301301110378871677643101584158886512121465405799998404676--6543012577546
Q gi|254780817|r    4 KQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN--NDKVIFRLELAYS   81 (152)
Q Consensus         4 ~~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~--~~~~~f~~Ei~ya   81 (152)
                      ..+|+|+|+++||||||||+||+|.+|.  .+|.|++++++|+++++++++.|||.|+++++++.  +++++|++|++||
T Consensus        13 ~~~p~f~I~~~YiKDlSFE~Pnap~~f~--~~~~p~~~i~vdi~s~~l~~~~~Ev~l~l~~~~~~~~~~~~~F~~E~~ya   90 (169)
T 1fx3_A           13 EQQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQA   90 (169)
T ss_dssp             --CCEEEEEEEEEEEEEEECTTHHHHTS--SCCCCCCCCCEEEEEEEEETTEEEEEEEEEECCCCTTTCCCSCEEEEEEE
T ss_pred             CCCCCEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEE
T ss_conf             3498568764887502533899756755--45588467888411220577731899999986313556773499998799


Q ss_pred             EEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             8999758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r   82 GILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM  151 (152)
Q Consensus        82 gif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~  151 (152)
                      |+|++.++++++++++|+|+||++||||||++|++++++||||||+|+||||++||++|++++++++...
T Consensus        91 gif~i~~~~~e~~~~~l~i~~P~~lFPy~R~iis~l~~~gGFppl~L~pIdF~~LY~~~~~~~~~~~~~~  160 (169)
T 1fx3_A           91 GVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEE  160 (169)
T ss_dssp             EEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             9999603866664134412572888789999999999846999746786589999999999988860457

class: Alpha and beta proteins (a+b)
fold: SecB-like
superfamily: SecB-like
family: Bacterial protein-export protein SecB
domain: Bacterial protein-export protein SecB
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (286), Expect = 5e-27
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
           F I   Y KD SFE+PNAPH F   ++ QP +K+++   ++ ++   ++V+L   + A  
Sbjct: 3   FQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASL 60

Query: 69  NDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128
            ++  F  E+   GI  I       ++  L   CP +LFP+ R+ I++ +  G FP L +
Sbjct: 61  GEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNL 120

Query: 129 DTIDFLKLFQQE 140
             ++F  LF   
Sbjct: 121 APVNFDALFMNY 132

class: Alpha and beta proteins (a+b)
fold: SecB-like
superfamily: SecB-like
family: Bacterial protein-export protein SecB
domain: Bacterial protein-export protein SecB
species: Haemophilus influenzae [TaxId: 727]

 Score =  107 bits (269), Expect = 4e-25
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 9   FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN 68
             I   Y+KD SFE+PN PH F   Q  +P +  ++      +    ++V+L+  +E   
Sbjct: 3   LQIQRIYVKDVSFEAPNLPHIF--QQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTL 60

Query: 69  N--DKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPL 126
                V F  E+  +G+  I       ++  L  +CP +LFP+ R+++SN +  G FP L
Sbjct: 61  EDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPAL 120

Query: 127 VIDTIDFLKLFQQEK 141
            +  ++F  LF +  
Sbjct: 121 NLSPVNFDALFVEYM 135

class: Alpha and beta proteins (a+b)
fold: SecB-like
superfamily: SecB-like
family: Bacterial protein-export protein SecB
domain: Bacterial protein-export protein SecB
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=0  Score=313.89  Aligned_cols=141  Identities=27%  Similarity=0.575  Sum_probs=132.3

Q ss_pred             CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCCCCEEEEEEEEEEE
Q ss_conf             01012301301110378871677643101584158886512121465405799998404676--6543012577546899
Q gi|254780817|r    7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN--NDKVIFRLELAYSGIL   84 (152)
Q Consensus         7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~--~~~~~f~~Ei~yagif   84 (152)
                      |+|+|+++||||||||+||+|.+|.  .+|.|++++++|+++++++++.|||.|+++++++.  +++++|++|++|||+|
T Consensus         1 P~f~I~~~YiKDlSFE~Pn~p~~f~--~~~~p~~~~~i~i~~~~l~~~~~Ev~l~l~~~~~~~~~~~~~F~~e~~yagif   78 (144)
T d1ozba_           1 PVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVF   78 (144)
T ss_dssp             CEEEEEEEEEEEEEEECTTTTGGGG--SCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEE
T ss_conf             9604867887612333899825645--35588557888632442477741799999997413455553189987589999


Q ss_pred             EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             97588710344466630455341789999999997389988660553989999999999986420
Q gi|254780817|r   85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEG  149 (152)
Q Consensus        85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~  149 (152)
                      .+.+.++++++++++|+||++||||||++|++++++|||||++|+||||++||++|++|++++++
T Consensus        79 ~i~~~~~~~~~~illi~~P~~lFP~~R~ii~~l~~~gGFppl~l~pIdF~~ly~~~~~q~~~~~~  143 (144)
T d1ozba_          79 TISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENA  143 (144)
T ss_dssp             EEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSHHHHHHHHHHHHHHSC
T ss_pred             EECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             95489878863567406728888899999999998469998467875899999999999887605

class: Alpha and beta proteins (a+b)
fold: SecB-like
superfamily: SecB-like
family: Bacterial protein-export protein SecB
domain: Bacterial protein-export protein SecB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=312.68  Aligned_cols=134  Identities=30%  Similarity=0.598  Sum_probs=129.4

Q ss_pred             CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             01012301301110378871677643101584158886512121465405799998404676654301257754689997
Q gi|254780817|r    7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGILRI   86 (152)
Q Consensus         7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif~i   86 (152)
                      |+|+|+++||||||||+|++|++|.  .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|++|||+|++
T Consensus         1 m~f~I~~~YiKDlSFE~P~~~~~f~--~~~~p~~~i~~~i~~~~~~~~~~Ev~l~l~~~~k~~~~~~f~~Ev~yagvf~i   78 (134)
T d1qyna_           1 MTFQIQRIYTKDISFEAPNAPHVFQ--KDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSI   78 (134)
T ss_dssp             CEEEEEEEEEEEEEEECTTHHHHTT--SCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEECCCCCCCCCHHHHC--CCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEE
T ss_conf             9679988998503543899805637--57798458988505421578779999999999835885146899999999999


Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58871034446663045534178999999999738998866055398999999999
Q gi|254780817|r   87 LDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKS  142 (152)
Q Consensus        87 ~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~  142 (152)
                      .+.++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++
T Consensus        79 ~~~~~~~~~~il~i~~P~~lfP~~R~ii~~l~~~gGfppl~L~pIdF~~Ly~~~~~  134 (134)
T d1qyna_          79 AGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQ  134 (134)
T ss_dssp             ESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC
T ss_pred             EECCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             50661442000221573888789999999999846999856687589999998619

 Score =  144 bits (365), Expect = 4e-36
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           +   +  F I   Y KD SFE+PNAPH F   ++ QP +K+++   ++ ++   ++V+L 
Sbjct: 4   QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
             + A   ++  F  E+   GI  I       ++  L   CP +LFP+ R+ I++ +  G
Sbjct: 62  VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121

Query: 122 GFPPLVIDTIDFLKLFQQEK 141
            FP L +  ++F  LF    
Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141

 Score =  141 bits (357), Expect = 4e-35
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
            ++Q+    I   Y+KD SFE+PN PH F   Q  +P +  ++      +    ++V+L+
Sbjct: 11  TEEQQPVLQIQRIYVKDVSFEAPNLPHIF--QQEWKPKLGFDLSTETTQVGDDLYEVVLN 68

Query: 62  FDIEAK--NNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119
             +E    ++  V F  E+  +G+  I       ++  L  +CP +LFP+ R+++SN + 
Sbjct: 69  ISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVN 128

Query: 120 DGGFPPLVIDTIDFLKLFQQEK 141
            G FP L +  ++F  LF +  
Sbjct: 129 RGTFPALNLSPVNFDALFVEYM 150

Probab=100.00  E-value=0  Score=298.40  Aligned_cols=149  Identities=28%  Similarity=0.540  Sum_probs=140.8

Q ss_pred             CCCCC--CCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             98311--3010123013011103788716776431015841588865121214654057999984046766543012577
Q gi|254780817|r    1 MEKKQ--KQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL   78 (152)
Q Consensus         1 M~~~~--~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei   78 (152)
                      |.+..  .|.|.|.++|+||||||+||+|.+|  ...|.|++++++++++++++++.|||.|+++++++.++++.|++|+
T Consensus         1 m~e~~~~~~~~~i~~~Y~Kd~SfE~P~~p~~f--~~~~~p~i~i~i~v~~~~~~e~~~eV~L~i~v~a~~~~~~~F~iev   78 (153)
T 1qyn_A            1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV   78 (153)
T ss_dssp             --------CEEEEEEEEEEEEEEECTTHHHHT--TSCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHH--CCCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf             98655678708888789850354489981453--6467984478883353034686499999999997268834899999


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             5468999758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r   79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM  151 (152)
Q Consensus        79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~  151 (152)
                      +|+|+|.+.|+++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++..
T Consensus        79 ~~~GiF~i~~i~~e~~~~~l~i~~p~iLfPY~R~~Vs~lt~~~gfppl~LppINF~~ly~~~~~~~~~~~~~~  151 (153)
T 1qyn_A           79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEE  151 (153)
T ss_dssp             EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC---------
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999737707778777863383888789999999999846999856787589999999999987641002

Probab=100.00  E-value=0  Score=291.67  Aligned_cols=145  Identities=27%  Similarity=0.570  Sum_probs=136.1

Q ss_pred             CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCC--CCCCCCEEEEEEEEE
Q ss_conf             130101230130111037887167764310158415888651212146540579999840467--665430125775468
Q gi|254780817|r    5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAK--NNDKVIFRLELAYSG   82 (152)
Q Consensus         5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak--~~~~~~f~~Ei~yag   82 (152)
                      .+|+|+|+++|+||+|||+||+|.+|.  .+|.|++++++++++++++++.|||.|+++++++  .++++.|++|+.|+|
T Consensus        14 ~~p~~~i~~~yiKD~SfE~pn~p~~f~--~~~~p~i~~~~~~~~~~~~e~~~eV~L~l~v~~~~~~~~~~~F~iev~~~G   91 (169)
T 1fx3_A           14 QQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAG   91 (169)
T ss_dssp             -CCEEEEEEEEEEEEEEECTTHHHHTS--SCCCCCCCCCEEEEEEEEETTEEEEEEEEEECCCCTTTCCCSCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCHHCC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf             498478764786503444889700025--467972578887412554787508999999986213477347888623899


Q ss_pred             EEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             999758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r   83 ILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM  151 (152)
Q Consensus        83 if~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~  151 (152)
                      +|.+.++++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++..
T Consensus        92 iF~i~~~~~e~~~~~L~i~~p~iLfPy~Re~Is~lt~~~gfpPl~LppINF~~ly~~~~~~~~~~~~~~  160 (169)
T 1fx3_A           92 VFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEE  160 (169)
T ss_dssp             EEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHHC---
T ss_pred             EEEECCCCCHHHHCCHHHCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             997514660222010322375887758999999999847999856787589999999999987763046