254780852
NADH dehydrogenase subunit A
GeneID in NCBI database: | 8209867 | Locus tag: | CLIBASIA_03735 |
Protein GI in NCBI database: | 254780852 | Protein Accession: | YP_003065265.1 |
Gene range: | +(822573, 822938) | Protein Length: | 121aa |
Gene description: | NADH dehydrogenase subunit A | ||
COG prediction: | [C] NADH:ubiquinone oxidoreductase subunit 3 (chain A) | ||
KEGG prediction: | nuoA; NADH dehydrogenase subunit A (EC:1.6.99.5); K00330 NADH dehydrogenase I subunit A [EC:1.6.5.3] | ||
SEED prediction: | NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) | ||
Pathway involved in KEGG: | Oxidative phosphorylation [PATH:las00190] | ||
Subsystem involved in SEED: | Respiratory Complex I | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 121 | NADH dehydrogenase subunit A [Candidatus Liberibacter a | |||
315122726 | 121 | NADH dehydrogenase subunit A [Candidatus Liberibacter s | 1 | 2e-52 | |
110633376 | 121 | NADH dehydrogenase subunit A [Mesorhizobium sp. BNC1] L | 1 | 2e-47 | |
153009752 | 121 | NADH dehydrogenase subunit A [Ochrobactrum anthropi ATC | 1 | 4e-46 | |
254501694 | 127 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 s | 1 | 6e-46 | |
17987441 | 121 | NADH dehydrogenase subunit A [Brucella melitensis bv. 1 | 1 | 2e-45 | |
23501689 | 121 | NADH dehydrogenase subunit A [Brucella suis 1330] Lengt | 1 | 3e-45 | |
222148274 | 124 | NADH dehydrogenase subunit A [Agrobacterium vitis S4] L | 1 | 6e-45 | |
294852159 | 121 | NADH dehydrogenase I subunit A [Brucella sp. NVSL 07-00 | 1 | 7e-45 | |
254469811 | 121 | NADH-quinone oxidoreductase chain a [Pseudovibrio sp. J | 1 | 2e-44 | |
118590039 | 121 | NADH dehydrogenase subunit A [Stappia aggregata IAM 126 | 1 | 2e-44 |
>gi|315122726|ref|YP_004063215.1| NADH dehydrogenase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 121 | Back alignment and organism information |
---|
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/121 (90%), Positives = 117/121 (96%) Query: 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD 60 M+DLLTSYAPILVF+AIASAIVI LMISPF+VAFKSPDPEKLSTYECGFDPFD A +KFD Sbjct: 1 MNDLLTSYAPILVFIAIASAIVIALMISPFLVAFKSPDPEKLSTYECGFDPFDSAHMKFD 60 Query: 61 IRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120 +RFCLVSVLF+IFDLEIAFLFPWAVYFK+I WLGFGSMMVFLGILTVGFIYEWKKGALEW Sbjct: 61 VRFCLVSVLFIIFDLEIAFLFPWAVYFKKIGWLGFGSMMVFLGILTVGFIYEWKKGALEW 120 Query: 121 D 121 D Sbjct: 121 D 121 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|110633376|ref|YP_673584.1| NADH dehydrogenase subunit A [Mesorhizobium sp. BNC1] Length = 121 | Back alignment and organism information |
---|
>gi|153009752|ref|YP_001370967.1| NADH dehydrogenase subunit A [Ochrobactrum anthropi ATCC 49188] Length = 121 | Back alignment and organism information |
---|
>gi|254501694|ref|ZP_05113845.1| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 superfamily [Labrenzia alexandrii DFL-11] Length = 127 | Back alignment and organism information |
---|
>gi|17987441|ref|NP_540075.1| NADH dehydrogenase subunit A [Brucella melitensis bv. 1 str. 16M] Length = 121 | Back alignment and organism information |
---|
>gi|23501689|ref|NP_697816.1| NADH dehydrogenase subunit A [Brucella suis 1330] Length = 121 | Back alignment and organism information |
---|
>gi|222148274|ref|YP_002549231.1| NADH dehydrogenase subunit A [Agrobacterium vitis S4] Length = 124 | Back alignment and organism information |
---|
>gi|294852159|ref|ZP_06792832.1| NADH dehydrogenase I subunit A [Brucella sp. NVSL 07-0026] Length = 121 | Back alignment and organism information |
---|
>gi|254469811|ref|ZP_05083216.1| NADH-quinone oxidoreductase chain a [Pseudovibrio sp. JE062] Length = 121 | Back alignment and organism information |
---|
>gi|118590039|ref|ZP_01547443.1| NADH dehydrogenase subunit A [Stappia aggregata IAM 12614] Length = 121 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 121 | NADH dehydrogenase subunit A [Candidatus Liberibacter a | ||
PRK06602 | 121 | PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subu | 1e-44 | |
MTH00055 | 118 | MTH00055, ND3, NADH dehydrogenase subunit 3; Provisiona | 2e-28 | |
MTH00018 | 113 | MTH00018, ND3, NADH dehydrogenase subunit 3; Validated | 2e-26 | |
pfam00507 | 102 | pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone o | 2e-25 | |
MTH00069 | 114 | MTH00069, ND3, NADH dehydrogenase subunit 3; Provisiona | 6e-24 | |
MTH00136 | 116 | MTH00136, ND3, NADH dehydrogenase subunit 3; Provisiona | 3e-23 | |
MTH00113 | 114 | MTH00113, ND3, NADH dehydrogenase subunit 3; Provisiona | 3e-23 | |
PRK07928 | 119 | PRK07928, PRK07928, NADH dehydrogenase subunit A; Valid | 2e-22 | |
CHL00022 | 120 | CHL00022, ndhC, NADH dehydrogenase subunit 3 | 1e-21 | |
MTH00030 | 123 | MTH00030, ND3, NADH dehydrogenase subunit 3; Provisiona | 8e-21 | |
MTH00042 | 116 | MTH00042, ND3, NADH dehydrogenase subunit 3; Validated | 1e-20 | |
PRK07756 | 122 | PRK07756, PRK07756, NADH dehydrogenase subunit A; Valid | 2e-19 | |
PRK08489 | 129 | PRK08489, PRK08489, NADH dehydrogenase subunit A; Valid | 1e-18 | |
KOG4662 | 122 | KOG4662, KOG4662, KOG4662, NADH dehydrogenase subunit 3 | 3e-18 | |
MTH00148 | 117 | MTH00148, ND3, NADH dehydrogenase subunit 3; Provisiona | 3e-18 | |
MTH00161 | 113 | MTH00161, ND3, NADH dehydrogenase subunit 3; Provisiona | 4e-18 | |
MTH00203 | 112 | MTH00203, ND3, NADH dehydrogenase subunit 3; Provisiona | 7e-18 | |
MTH00012 | 117 | MTH00012, ND3, NADH dehydrogenase subunit 3; Validated | 1e-14 | |
MTH00202 | 117 | MTH00202, ND3, NADH dehydrogenase subunit 3; Provisiona | 5e-14 | |
MTH00092 | 111 | MTH00092, ND3, NADH dehydrogenase subunit 3; Provisiona | 2e-04 | |
COG0838 | 123 | COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 | 3e-29 | |
MTH00106 | 115 | MTH00106, ND3, NADH dehydrogenase subunit 3; Provisiona | 1e-14 | |
PRK06432 | 144 | PRK06432, PRK06432, NADH dehydrogenase subunit A; Valid | 6e-06 | |
MTH00060 | 116 | MTH00060, ND3, NADH dehydrogenase subunit 3; Provisiona | 0.002 |
>gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated | Back alignment and domain information |
---|
>gnl|CDD|177128 MTH00055, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
---|
>gnl|CDD|109558 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | Back alignment and domain information |
---|
>gnl|CDD|177141 MTH00069, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|177194 MTH00136, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|177175 MTH00113, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|181171 PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>gnl|CDD|176964 CHL00022, ndhC, NADH dehydrogenase subunit 3 | Back alignment and domain information |
---|
>gnl|CDD|164603 MTH00030, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
---|
>gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>gnl|CDD|181448 PRK08489, PRK08489, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>gnl|CDD|39861 KOG4662, KOG4662, KOG4662, NADH dehydrogenase subunit 3 and related proteins [Energy production and conversion] | Back alignment and domain information |
---|
>gnl|CDD|177205 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|177248 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|164588 MTH00012, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
---|
>gnl|CDD|177247 MTH00202, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|31180 COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] | Back alignment and domain information |
---|
>gnl|CDD|177168 MTH00106, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>gnl|CDD|102372 PRK06432, PRK06432, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>gnl|CDD|177132 MTH00060, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 121 | NADH dehydrogenase subunit A [Candidatus Liberibacter a | ||
PRK06602 | 121 | NADH dehydrogenase subunit A; Validated | 100.0 | |
CHL00022 | 120 | ndhC NADH dehydrogenase subunit 3 | 100.0 | |
PRK07756 | 122 | NADH dehydrogenase subunit A; Validated | 100.0 | |
PRK07928 | 119 | NADH dehydrogenase subunit A; Validated | 100.0 | |
MTH00055 | 118 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
MTH00018 | 116 | ND3 NADH dehydrogenase subunit 3; Validated | 100.0 | |
MTH00030 | 123 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
PRK08489 | 129 | NADH dehydrogenase subunit A; Validated | 100.0 | |
MTH00202 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
COG0838 | 123 | NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) | 100.0 | |
MTH00042 | 116 | ND3 NADH dehydrogenase subunit 3; Validated | 100.0 | |
MTH00203 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
MTH00148 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
PRK06432 | 144 | NADH dehydrogenase subunit A; Validated | 100.0 | |
MTH00161 | 113 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
MTH00069 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
MTH00012 | 117 | ND3 NADH dehydrogenase subunit 3; Validated | 100.0 | |
MTH00136 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
MTH00106 | 115 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
MTH00113 | 115 | ND3 NADH dehydrogenase subunit 3; Provisional | 100.0 | |
pfam00507 | 102 | Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductas | 100.0 | |
KOG4662 | 122 | consensus | 100.0 | |
MTH00092 | 111 | ND3 NADH dehydrogenase subunit 3; Provisional | 99.95 | |
PRK06073 | 125 | NADH dehydrogenase subunit A; Validated | 99.87 | |
MTH00060 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 99.85 |
>PRK06602 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>CHL00022 ndhC NADH dehydrogenase subunit 3 | Back alignment and domain information |
---|
>PRK07756 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>PRK07928 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
---|
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>PRK08489 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] | Back alignment and domain information |
---|
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
---|
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>MTH00148 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>PRK06432 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>MTH00069 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
---|
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>pfam00507 Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | Back alignment and domain information |
---|
>KOG4662 consensus | Back alignment and domain information |
---|
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
>PRK06073 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
---|
>MTH00060 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00