254780856
NADH-quinone oxidoreductase, E subunit
GeneID in NCBI database: | 8209871 | Locus tag: | CLIBASIA_03755 |
Protein GI in NCBI database: | 254780856 | Protein Accession: | YP_003065269.1 |
Gene range: | +(825420, 826076) | Protein Length: | 218aa |
Gene description: | NADH-quinone oxidoreductase, E subunit | ||
COG prediction: | [C] NADH:ubiquinone oxidoreductase 24 kD subunit | ||
KEGG prediction: | nuoE; NADH-quinone oxidoreductase, E subunit; K00334 NADH dehydrogenase I subunit E [EC:1.6.5.3] | ||
SEED prediction: | NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) | ||
Pathway involved in KEGG: | Oxidative phosphorylation [PATH:las00190] | ||
Subsystem involved in SEED: | Respiratory Complex I | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | |||
315122722 | 203 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | 1 | 1e-102 | |
218681069 | 322 | NADH dehydrogenase subunit E [Rhizobium etli CIAT 894] | 1 | 7e-92 | |
86357242 | 385 | NADH dehydrogenase subunit E [Rhizobium etli CFN 42] Le | 1 | 9e-92 | |
327188492 | 385 | NADH dehydrogenase subunit E [Rhizobium etli CNPAF512] | 1 | 1e-91 | |
241204091 | 388 | NADH dehydrogenase subunit E [Rhizobium leguminosarum b | 1 | 2e-91 | |
116251470 | 388 | NADH dehydrogenase subunit E [Rhizobium leguminosarum b | 1 | 1e-90 | |
209548867 | 388 | NADH dehydrogenase subunit E [Rhizobium leguminosarum b | 1 | 1e-90 | |
222085580 | 381 | NADH-ubiquinone oxidoreductase chain E protein [Agrobac | 1 | 7e-89 | |
110633380 | 345 | NADH-quinone oxidoreductase, E subunit [Mesorhizobium s | 1 | 8e-89 | |
15888603 | 369 | NADH dehydrogenase subunit E [Agrobacterium tumefaciens | 1 | 6e-88 |
>gi|315122722|ref|YP_004063211.1| NADH-quinone oxidoreductase, E subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 203 | Back alignment and organism information |
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Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/202 (86%), Positives = 188/202 (93%) Query: 1 MSVRRLAEEEFQPSSFSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAA 60 MS+RRLA EEFQPSSFSFSEE+ +W NEV+S+YP SR QSAVIPLLMR QEQEGWVSRAA Sbjct: 1 MSIRRLAAEEFQPSSFSFSEENIVWANEVMSKYPSSRYQSAVIPLLMRVQEQEGWVSRAA 60 Query: 61 IEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKI 120 IE VA +LDMAYIRVLEI TFYTQFQL+PVGT AHVQVCGTTPCMLRGCE LIEVCRNKI Sbjct: 61 IEFVAGMLDMAYIRVLEIVTFYTQFQLAPVGTHAHVQVCGTTPCMLRGCEDLIEVCRNKI 120 Query: 121 HQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIDAFSTGQGDTI 180 HQKPLHRN +G LSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEII+AFS G+GD+I Sbjct: 121 HQKPLHRNPEGKLSWEEVECQGACVNAPMVMIGKDTYEDLTPERLEEIIEAFSAGRGDSI 180 Query: 181 RPGPQIDRISSAPAGGLTSLLD 202 RPGPQIDRISSAPAGGLTSL++ Sbjct: 181 RPGPQIDRISSAPAGGLTSLVE 202 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|218681069|ref|ZP_03528966.1| NADH dehydrogenase subunit E [Rhizobium etli CIAT 894] Length = 322 | Back alignment and organism information |
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>gi|86357242|ref|YP_469134.1| NADH dehydrogenase subunit E [Rhizobium etli CFN 42] Length = 385 | Back alignment and organism information |
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>gi|327188492|gb|EGE55706.1| NADH dehydrogenase subunit E [Rhizobium etli CNPAF512] Length = 385 | Back alignment and organism information |
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>gi|241204091|ref|YP_002975187.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 388 | Back alignment and organism information |
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>gi|116251470|ref|YP_767308.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. viciae 3841] Length = 388 | Back alignment and organism information |
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>gi|209548867|ref|YP_002280784.1| NADH dehydrogenase subunit E [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 388 | Back alignment and organism information |
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>gi|222085580|ref|YP_002544110.1| NADH-ubiquinone oxidoreductase chain E protein [Agrobacterium radiobacter K84] Length = 381 | Back alignment and organism information |
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>gi|110633380|ref|YP_673588.1| NADH-quinone oxidoreductase, E subunit [Mesorhizobium sp. BNC1] Length = 345 | Back alignment and organism information |
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>gi|15888603|ref|NP_354284.1| NADH dehydrogenase subunit E [Agrobacterium tumefaciens str. C58] Length = 369 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
PRK12373 | 400 | PRK12373, PRK12373, NADH dehydrogenase subunit E; Provi | 1e-104 | |
KOG3196 | 233 | KOG3196, KOG3196, KOG3196, NADH:ubiquinone oxidoreducta | 3e-44 | |
PRK07539 | 154 | PRK07539, PRK07539, NADH dehydrogenase subunit E; Valid | 1e-63 | |
TIGR01958 | 148 | TIGR01958, nuoE_fam, NADH-quinone oxidoreductase, E sub | 5e-55 | |
COG1905 | 160 | COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD sub | 1e-53 | |
PRK07571 | 169 | PRK07571, PRK07571, bidirectional hydrogenase complex p | 5e-17 | |
PRK05988 | 156 | PRK05988, PRK05988, formate dehydrogenase subunit gamma | 4e-12 | |
pfam01257 | 145 | pfam01257, Complex1_24kDa, Respiratory-chain NADH dehyd | 1e-58 | |
cd03064 | 80 | cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) | 8e-23 | |
cd02980 | 77 | cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] | 2e-14 | |
cd03081 | 80 | cd03081, TRX_Fd_NuoE_FDH_gamma, TRX-like [2Fe-2S] Ferre | 1e-07 |
>gnl|CDD|183479 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional | Back alignment and domain information |
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>gnl|CDD|38406 KOG3196, KOG3196, KOG3196, NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|181024 PRK07539, PRK07539, NADH dehydrogenase subunit E; Validated | Back alignment and domain information |
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>gnl|CDD|131013 TIGR01958, nuoE_fam, NADH-quinone oxidoreductase, E subunit | Back alignment and domain information |
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>gnl|CDD|32089 COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|136420 PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed | Back alignment and domain information |
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>gnl|CDD|180339 PRK05988, PRK05988, formate dehydrogenase subunit gamma; Validated | Back alignment and domain information |
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>gnl|CDD|144740 pfam01257, Complex1_24kDa, Respiratory-chain NADH dehydrogenase 24 Kd subunit | Back alignment and domain information |
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>gnl|CDD|48613 cd03064, TRX_Fd_NuoE, TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
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>gnl|CDD|48529 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE) | Back alignment and domain information |
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>gnl|CDD|48630 cd03081, TRX_Fd_NuoE_FDH_gamma, TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
PRK12373 | 403 | NADH dehydrogenase subunit E; Provisional | 100.0 | |
KOG3196 | 233 | consensus | 100.0 | |
PRK07571 | 169 | bidirectional hydrogenase complex protein HoxE; Reviewe | 100.0 | |
TIGR01958 | 153 | nuoE_fam NADH-quinone oxidoreductase, E subunit; InterP | 100.0 | |
PRK07539 | 154 | NADH dehydrogenase subunit E; Validated | 100.0 | |
PRK05988 | 156 | formate dehydrogenase subunit gamma; Validated | 100.0 | |
COG1905 | 160 | NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Ener | 100.0 | |
pfam01257 | 145 | Complex1_24kDa Respiratory-chain NADH dehydrogenase 24 | 100.0 | |
cd03083 | 80 | TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) fami | 99.94 | |
cd03081 | 80 | TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) | 99.94 | |
cd03064 | 80 | TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, N | 99.91 | |
cd02980 | 77 | TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxi | 99.58 | |
cd03082 | 72 | TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd | 99.54 | |
cd03062 | 97 | TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family | 96.54 | |
cd03063 | 92 | TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) famil | 95.75 | |
COG5469 | 143 | Predicted metal-binding protein [Function unknown] | 95.22 | |
pfam07293 | 78 | DUF1450 Protein of unknown function (DUF1450). This fam | 94.22 | |
pfam07845 | 116 | DUF1636 Protein of unknown function (DUF1636). The sequ | 94.19 | |
pfam06999 | 218 | Suc_Fer-like Sucrase/ferredoxin-like. This family conta | 93.72 | |
PRK13669 | 78 | hypothetical protein; Provisional | 93.49 | |
COG3411 | 64 | Ferredoxin [Energy production and conversion] | 97.05 |
>PRK12373 NADH dehydrogenase subunit E; Provisional | Back alignment and domain information |
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>KOG3196 consensus | Back alignment and domain information |
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>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed | Back alignment and domain information |
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>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit; InterPro: IPR002023 Respiratory-chain NADH dehydrogenase (ubiquinone) (1 | Back alignment and domain information |
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>PRK07539 NADH dehydrogenase subunit E; Validated | Back alignment and domain information |
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>PRK05988 formate dehydrogenase subunit gamma; Validated | Back alignment and domain information |
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>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion] | Back alignment and domain information |
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>pfam01257 Complex1_24kDa Respiratory-chain NADH dehydrogenase 24 Kd subunit | Back alignment and domain information |
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>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16 | Back alignment and domain information |
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>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH | Back alignment and domain information |
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>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
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>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE) | Back alignment and domain information |
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>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens | Back alignment and domain information |
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>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity | Back alignment and domain information |
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>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH | Back alignment and domain information |
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>COG5469 Predicted metal-binding protein [Function unknown] | Back alignment and domain information |
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>pfam07293 DUF1450 Protein of unknown function (DUF1450) | Back alignment and domain information |
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>pfam07845 DUF1636 Protein of unknown function (DUF1636) | Back alignment and domain information |
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>pfam06999 Suc_Fer-like Sucrase/ferredoxin-like | Back alignment and domain information |
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>PRK13669 hypothetical protein; Provisional | Back alignment and domain information |
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>COG3411 Ferredoxin [Energy production and conversion] | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
2fug_2 | 181 | Crystal Structure Of The Hydrophilic Domain Of Resp | 1e-31 | |
2auv_A | 85 | Solution Structure Of Hndac : A Thioredoxin-Like [2 | 9e-13 | |
1f37_A | 110 | Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin | 0.001 |
gi|90109655|pdb|2FUG|2 Chain 2, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 181 | Back alignment and structure |
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 2/160 (1%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V+ Sbjct: 3 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 62 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ +Q P G + H+QVC T C L G E+L + + P DG S ++ Sbjct: 63 VASFYSYYQFVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQK 121 Query: 138 VECQGACVNAPMVMIGKD-TYEDLTPERLEEIIDAFSTGQ 176 VEC G+C AP++ + + E +T RLE ++ G+ Sbjct: 122 VECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 161 |
>gi|157881313|pdb|2AUV|A Chain A, Solution Structure Of Hndac : A Thioredoxin-Like [2fe-2s] Ferredoxin Involved In The Nadp-Reducing Hydrogenase Complex Length = 85 | Back alignment and structure |
>gi|9955119|pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex Aeolicus Length = 110 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
3i9v_2 | 181 | NADH-quinone oxidoreductase subunit 2; electron transpo | 3e-39 | |
2auv_A | 85 | Potential NAD-reducing hydrogenase subunit; thioredoxin | 4e-23 | |
1m2d_A | 110 | [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cl | 2e-11 |
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* Length = 181 | Back alignment and structure |
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Score = 156 bits (396), Expect = 3e-39 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 4/179 (2%) Query: 17 SFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVL 76 F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V+ Sbjct: 2 GFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 Query: 77 EIATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWE 136 +A+FY+ +Q P + H+QVC T C L G E+L + + P DG S + Sbjct: 62 GVASFYSYYQFVPT-GKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQ 120 Query: 137 EVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 +VEC G+C AP++ + + Y E +T RLE ++ G+ + + Sbjct: 121 KVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK--RLEEIELPGKCGHHVH 177 |
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans} Length = 85 | Back alignment and structure |
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>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
3i9v_2 | 181 | NADH-quinone oxidoreductase subunit 2; electron transpo | 100.0 | |
2auv_A | 85 | Potential NAD-reducing hydrogenase subunit; thioredoxin | 99.92 | |
1m2d_A | 110 | [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cl | 99.4 |
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* 3m9s_2* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=375.22 Aligned_cols=162 Identities=32% Similarity=0.677 Sum_probs=156.9 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEE Q ss_conf 56589999999999986784321336999999999982668999999999850887999999997644320222787069 Q gi|254780856|r 16 FSFSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAH 95 (218) Q Consensus 16 f~fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~ 95 (218) +.|+++..+.|++||++||.+++|++|||+||.+|+++||||++++++||+.|++|+++||+|||||+||+++|+| ||+ T Consensus 1 m~~~~~~~~~i~~ii~~Yp~~~~r~all~~L~~iQ~~~GyIp~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g-k~~ 79 (181) T 3i9v_2 1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG-KYH 79 (181) T ss_dssp --CTTTCHHHHHHHHTTSCTTCCGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSSCCC-SEE T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-CEE T ss_conf 9988889999999998788864776999999999998299099999999999892999999999762502358898-868 Q ss_pred EEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHC Q ss_conf 99618835877089248999998827564751778818999532456677886799858341-45889899999999982 Q gi|254780856|r 96 VQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFST 174 (218) Q Consensus 96 I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~ 174 (218) |+||++++|+++|+++|+++++++|||+.|+||+||+|||++++|||+|++||+|+||++.| ++||++++++||+.||+ T Consensus 80 i~VC~~~~C~~~Ga~~l~~~l~~~Lgi~~gett~Dg~ftle~~~ClG~C~~AP~v~Vn~~~y~~~lt~e~~~~il~~lr~ 159 (181) T 3i9v_2 80 LQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRA 159 (181) T ss_dssp EEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSSCCBCCCCHHHHHHHHHHHHT T ss_pred EEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEECCCCEEEECCEEECCCCCHHHHHHHHHHHHC T ss_conf 99559768775788689999999819999967899868764221768607898499989873587999999999999986 Q ss_pred CCCC Q ss_conf 8899 Q gi|254780856|r 175 GQGD 178 (218) Q Consensus 175 gk~~ 178 (218) |+.. T Consensus 160 g~~~ 163 (181) T 3i9v_2 160 GKRL 163 (181) T ss_dssp TCCG T ss_pred CCCC T ss_conf 9999 |
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans} | Back alignment and structure |
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>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | |||
d2fug21 | 178 | c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2 | 6e-38 | |
d1m2da_ | 101 | c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aqui | 3e-11 |
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: NQO2-like domain: NADH-quinone oxidoreductase chain 2, NQO2 species: Thermus thermophilus [TaxId: 274] Score = 151 bits (381), Expect = 6e-38 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 4/178 (2%) Query: 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLE 77 F ++ ++ E ++YPP ++A++PLL R Q++EGW+ IE +A ++ V+ Sbjct: 1 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMG 60 Query: 78 IATFYTQFQLSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEE 137 +A+FY+ +Q P + H+QVC T C L G E+L + + P DG S ++ Sbjct: 61 VASFYSYYQFVPT-GKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQK 119 Query: 138 VECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPA 194 VEC G+C AP++ + + Y E +T RLE ++ G + + Sbjct: 120 VECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLR--AGKRLEEIELPGKCGHHVH 175 |
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
d2fug21 | 178 | NADH-quinone oxidoreductase chain 2, NQO2 {Thermus ther | 100.0 | |
d1m2da_ | 101 | Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [T | 99.3 |
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: NQO2-like domain: NADH-quinone oxidoreductase chain 2, NQO2 species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=0 Score=377.68 Aligned_cols=174 Identities=31% Similarity=0.635 Sum_probs=161.6 Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 58999999999998678432133699999999998266899999999985088799999999764432022278706999 Q gi|254780856|r 18 FSEESAIWVNEVISRYPPSRCQSAVIPLLMRAQEQEGWVSRAAIEVVANILDMAYIRVLEIATFYTQFQLSPVGTRAHVQ 97 (218) Q Consensus 18 fs~e~~~~i~~ii~~yP~~~~~salip~L~~vQ~~~G~Ip~eai~~iA~~L~i~~~~V~~VaTFY~~f~~~P~G~k~~I~ 97 (218) |+++..+.|++||++||.+++|++|||+||.+|+++||||++++++||+.|+||+++||+|+|||+||+++|+| ||+|+ T Consensus 1 f~~~~~~~i~~ii~~Yp~~~~~~ali~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~g-k~~i~ 79 (178) T d2fug21 1 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTG-KYHLQ 79 (178) T ss_dssp CTTTTHHHHHHHHHTSCSSCGGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSCSSCCC-SEEEE T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCC-CCEEE T ss_conf 98789999999998788854643899999999998698788999999999797989999999855311035665-40247 Q ss_pred ECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHH-CCCCHHHHHHHHHHHHCCC Q ss_conf 618835877089248999998827564751778818999532456677886799858341-4588989999999998288 Q gi|254780856|r 98 VCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKDTY-EDLTPERLEEIIDAFSTGQ 176 (218) Q Consensus 98 VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~~y-~~lt~e~~~~il~~Lr~gk 176 (218) ||++++|+++|+.+|+++++++|||+.|+||+||+|||++++|||+|+.||+|+||++.| ++||++++++||+.||+|+ T Consensus 80 VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~In~~~y~~~lt~e~~~~il~~lr~~~ 159 (178) T d2fug21 80 VCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAGK 159 (178) T ss_dssp EECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEECSSSSBCCSCCHHHHHHHHHHHHTTC T ss_pred ECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHCCC T ss_conf 54715644402033689987631223011169987888975225716889969994977467799999999999998699 Q ss_pred CC--CCCCCCCCCCCCCCC Q ss_conf 99--987488478643367 Q gi|254780856|r 177 GD--TIRPGPQIDRISSAP 193 (218) Q Consensus 177 ~~--~~k~g~~~~r~~~~~ 193 (218) .. .+.|| +.+|..+++ T Consensus 160 ~~~~~~~~~-~~~~~~~~~ 177 (178) T d2fug21 160 RLEEIELPG-KCGHHVHEV 177 (178) T ss_dssp CGGGCCCSS-CCCSSBCCC T ss_pred CCCCCCCCC-CCCCCCCCC T ss_conf 998788889-889763147 |
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus | ||
3i9v_2_72-181 | 110 | (2:72-181) NADH-quinone oxidoreductase subunit 2; | 2e-23 | |
2auv_A_ | 85 | (A:) Potential NAD-reducing hydrogenase subunit; t | 8e-23 | |
1m2d_A_ | 110 | (A:) [2Fe-2S] ferredoxin; thioredoxin-like fold, [ | 9e-18 | |
3i9v_2_22-71 | 50 | (2:22-71) NADH-quinone oxidoreductase subunit 2; e | 2e-14 |
>3i9v_2 (2:72-181) NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2*Length = 110 | Back alignment and structure |
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Score = 103 bits (259), Expect = 2e-23 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVN 146 P G + H+QVC T C L G E+L + + P DG S ++VEC G+C Sbjct: 1 FVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHT 59 Query: 147 APMVMI-GKDTYEDLTPERLEEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 AP++ + + E +T RLE ++ G + + Sbjct: 60 APVIQVNDEPYVECVTRARLEALLAGLR--AGKRLEEIELPGKCGHHVHEV 108 |
>2auv_A (A:) Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}Length = 85 | Back alignment and structure |
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>1m2d_A (A:) [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus}Length = 110 | Back alignment and structure |
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>3i9v_2 (2:22-71) NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2*Length = 50 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 218 | NADH-quinone oxidoreductase, E subunit [Candidatus Libe | ||
3i9v_2_72-181 | 110 | NADH-quinone oxidoreductase subunit 2; electron tr | 99.84 | |
2auv_A_ | 85 | Potential NAD-reducing hydrogenase subunit; thiore | 99.81 | |
1m2d_A_ | 110 | [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2 | 99.58 | |
3i9v_2_22-71 | 50 | NADH-quinone oxidoreductase subunit 2; electron tr | 99.57 |
>3i9v_2 (2:72-181) NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* | Back alignment and structure |
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Probab=99.84 E-value=1.8e-20 Score=158.69 Aligned_cols=107 Identities=27% Similarity=0.473 Sum_probs=94.8 Q ss_pred CCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCH-HHCCCCHHHH Q ss_conf 222787069996188358770892489999988275647517788189995324566778867998583-4145889899 Q gi|254780856|r 87 LSPVGTRAHVQVCGTTPCMLRGCEKLIEVCRNKIHQKPLHRNSDGTLSWEEVECQGACVNAPMVMIGKD-TYEDLTPERL 165 (218) Q Consensus 87 ~~P~G~k~~I~VC~~~~C~l~G~~~l~~~l~~~Lgi~~gett~DG~ftLe~v~CLG~C~~AP~~~Vn~~-~y~~lt~e~~ 165 (218) ++|+| ||+|+||++++|+++|+++++++|+++|+...++++.||.|+++.+.|+|.|+.||+|+|+++ +|+++|++++ T Consensus 1 ~~P~~-k~~I~VC~g~~C~~~G~~~v~~~l~~~l~~~~~~~~~dg~v~~~~t~ClG~C~~gP~v~i~~~~~y~~vt~e~v 79 (110) T 3i9v_2 1 FVPTG-KYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARL 79 (110) T ss_dssp SSCCC-SEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSSCCBCCCCHHHH T ss_pred CCCCC-CEEEEECCCHHHEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCEEECCCCCHHHH T ss_conf 35675-43578804502100586125788754222120121699818988764267268899699949774677999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9999999828899987488478643367788 Q gi|254780856|r 166 EEIIDAFSTGQGDTIRPGPQIDRISSAPAGG 196 (218) Q Consensus 166 ~~il~~Lr~gk~~~~k~g~~~~r~~~~~~~G 196 (218) ++|++.|+.|++. ....+..+....+..+ T Consensus 80 ~~iv~~l~~g~~v--~~~~~~~~~~~~~~~~ 108 (110) T 3i9v_2 80 EALLAGLRAGKRL--EEIELPGKCGHHVHEV 108 (110) T ss_dssp HHHHHHHHTTCCG--GGCCCSSCCCSSBCCC T ss_pred HHHHHHHHCCCCC--CCCCCCCCCCCCCCCC T ss_conf 9999999869999--9788889888862214 |
>2auv_A (A:) Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans} | Back alignment and structure |
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>1m2d_A (A:) [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} | Back alignment and structure |
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>3i9v_2 (2:22-71) NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2* | Back alignment and structure |
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