254780911
formyltetrahydrofolate deformylase
GeneID in NCBI database: | 8209931 | Locus tag: | CLIBASIA_04050 |
Protein GI in NCBI database: | 254780911 | Protein Accession: | YP_003065324.1 |
Gene range: | -(888733, 889599) | Protein Length: | 288aa |
Gene description: | formyltetrahydrofolate deformylase | ||
COG prediction: | [F] Formyltetrahydrofolate hydrolase | ||
KEGG prediction: | formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] | ||
SEED prediction: | Formyltetrahydrofolate deformylase (EC 3.5.1.10) | ||
Pathway involved in KEGG: | Glyoxylate and dicarboxylate metabolism [PATH:las00630]
One carbon pool by folate [PATH:las00670] | ||
Subsystem involved in SEED: | One-carbon metabolism by tetrahydropterines | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | |||
254780570 | 205 | phosphoribosylglycinamide formyltransferase [Candi | 8e-15 | ||
255764462 | 310 | methionyl-tRNA formyltransferase [Candidatus Liber | 0.011 |
>gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 205 | Back alignment |
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Score = 72.4 bits (176), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 3/132 (2%) Query: 113 IVGVVSNHTTHKKLVE--NYQLPFYYLPMTEQ-NKIESEQKLINIIEKNNVELMILARYM 169 IVGV S+++ + LV+ ++P + +P + ++ E E+ ++ + +L+ LA YM Sbjct: 33 IVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYM 92 Query: 170 QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229 ++LS +I+NIH S LP F G + +++ + G+KI G T H +D GPII Sbjct: 93 RLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPII 152 Query: 230 EQDVVRVTHAQT 241 Q V V+ T Sbjct: 153 AQAAVPVSSQDT 164 |
>gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 | Back alignment |
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Score = 32.0 bits (71), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 18/113 (15%) Query: 121 TTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCHKM 180 HKK + + LP L T+ + E EQ L N ++ ++ Y ++ + + Sbjct: 50 AVHKK-AQEFSLP--ALVPTKLGQEEYEQFL-----SFNADVAVVVAYGLVIPQRILNAT 101 Query: 181 TGRIINIHHSFLPSFKGANPYKQAY-----EYGVKIIGATAHYAICELDAGPI 228 N H S LP ++GA P ++A E G+ I+ H LD GP+ Sbjct: 102 KLGFYNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKH-----LDTGPV 149 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | |||
315122658 | 289 | formyltetrahydrofolate deformylase [Candidatus Liberiba | 1 | 1e-114 | |
222084490 | 294 | formyltetrahydrofolate deformylase [Agrobacterium radio | 1 | 8e-99 | |
222082165 | 294 | formyltetrahydrofolate deformylase [Agrobacterium radio | 1 | 2e-98 | |
222081891 | 294 | formyltetrahydrofolate deformylase [Agrobacterium radio | 1 | 3e-98 | |
325293815 | 294 | formyltetrahydrofolate deformylase [Agrobacterium sp. H | 1 | 4e-98 | |
153008789 | 294 | formyltetrahydrofolate deformylase [Ochrobactrum anthro | 1 | 7e-98 | |
294677927 | 294 | formyltetrahydrofolate deformylase [Rhodobacter capsula | 1 | 1e-97 | |
239832558 | 294 | formyltetrahydrofolate deformylase [Ochrobactrum interm | 1 | 3e-97 | |
209551777 | 294 | formyltetrahydrofolate deformylase [Rhizobium leguminos | 1 | 3e-97 | |
209546027 | 294 | formyltetrahydrofolate deformylase [Rhizobium leguminos | 1 | 7e-97 |
>gi|315122658|ref|YP_004063147.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 289 | Back alignment and organism information |
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Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/288 (68%), Positives = 242/288 (84%), Gaps = 3/288 (1%) Query: 1 MSSYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVF--NTCMK 58 MS +ILT+T PS++EI S++ YLS + C+ILD++QFND +T K FMR SF +TCMK Sbjct: 1 MSIHILTVTSPSHKEIISVLSGYLSGK-CDILDLAQFNDSNTRKFFMRASFTLKKHTCMK 59 Query: 59 LFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVS 118 F+ DFQPI+QQFSL+ SIRN KE KTLILVS+ DHCL+DLLY+WN TLA++I G+VS Sbjct: 60 NFLIDFQPIIQQFSLKISIRNAKERMKTLILVSRFDHCLHDLLYQWNARTLAMDIAGIVS 119 Query: 119 NHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 NH H+KL +YQ+PFYY+P+T+QNKI+ E++LINIIEKNNV+L+ILARYMQILS+ +C Sbjct: 120 NHPIHQKLATDYQIPFYYIPITKQNKIKCEEELINIIEKNNVKLLILARYMQILSEKICQ 179 Query: 179 KMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238 KM+GRIINIHHSFLPSFKG NPYKQAYEYGVKIIGATAHY LD GPIIEQDVV +TH Sbjct: 180 KMSGRIINIHHSFLPSFKGGNPYKQAYEYGVKIIGATAHYVTPALDEGPIIEQDVVHITH 239 Query: 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFPAYPNNY 286 AQ +++YI+IG+NIE KVL+ AVNAHIQ RVFIN+RKT+VFP N+Y Sbjct: 240 AQNVKNYISIGRNIETKVLSNAVNAHIQHRVFINERKTVVFPTQSNDY 287 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222084490|ref|YP_002543019.1| formyltetrahydrofolate deformylase [Agrobacterium radiobacter K84] Length = 294 | Back alignment and organism information |
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>gi|222082165|ref|YP_002541530.1| formyltetrahydrofolate deformylase [Agrobacterium radiobacter K84] Length = 294 | Back alignment and organism information |
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>gi|222081891|ref|YP_002541256.1| formyltetrahydrofolate deformylase [Agrobacterium radiobacter K84] Length = 294 | Back alignment and organism information |
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>gi|325293815|ref|YP_004279679.1| formyltetrahydrofolate deformylase [Agrobacterium sp. H13-3] Length = 294 | Back alignment and organism information |
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>gi|153008789|ref|YP_001370004.1| formyltetrahydrofolate deformylase [Ochrobactrum anthropi ATCC 49188] Length = 294 | Back alignment and organism information |
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>gi|294677927|ref|YP_003578542.1| formyltetrahydrofolate deformylase [Rhodobacter capsulatus SB 1003] Length = 294 | Back alignment and organism information |
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>gi|239832558|ref|ZP_04680887.1| formyltetrahydrofolate deformylase [Ochrobactrum intermedium LMG 3301] Length = 294 | Back alignment and organism information |
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>gi|209551777|ref|YP_002283694.1| formyltetrahydrofolate deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 294 | Back alignment and organism information |
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>gi|209546027|ref|YP_002277917.1| formyltetrahydrofolate deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 294 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | ||
PRK06027 | 286 | PRK06027, purU, formyltetrahydrofolate deformylase; Rev | 1e-112 | |
PRK13011 | 286 | PRK13011, PRK13011, formyltetrahydrofolate deformylase; | 1e-111 | |
PRK13010 | 289 | PRK13010, purU, formyltetrahydrofolate deformylase; Rev | 2e-99 | |
TIGR00655 | 280 | TIGR00655, PurU, formyltetrahydrofolate deformylase | 8e-76 | |
PLN02828 | 268 | PLN02828, PLN02828, formyltetrahydrofolate deformylase | 3e-56 | |
COG0788 | 287 | COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleo | 1e-103 | |
COG0299 | 200 | COG0299, PurN, Folate-dependent phosphoribosylglycinami | 1e-30 | |
pfam00551 | 181 | pfam00551, Formyl_trans_N, Formyl transferase | 1e-28 | |
KOG3076 | 206 | KOG3076, KOG3076, KOG3076, 5'-phosphoribosylglycinamide | 2e-28 | |
PRK05647 | 200 | PRK05647, purN, phosphoribosylglycinamide formyltransfe | 5e-28 | |
COG0223 | 307 | COG0223, Fmt, Methionyl-tRNA formyltransferase [Transla | 1e-10 | |
TIGR00639 | 190 | TIGR00639, PurN, phosphoribosylglycinamide formyltransf | 8e-23 | |
PLN02331 | 207 | PLN02331, PLN02331, phosphoribosylglycinamide formyltra | 7e-12 | |
TIGR00460 | 313 | TIGR00460, fmt, methionyl-tRNA formyltransferase | 6e-09 | |
KOG3082 | 338 | KOG3082, KOG3082, KOG3082, Methionyl-tRNA formyltransfe | 4e-05 | |
PRK00005 | 309 | PRK00005, fmt, methionyl-tRNA formyltransferase; Review | 2e-04 | |
PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic acid de | 0.001 | |
PRK07579 | 245 | PRK07579, PRK07579, hypothetical protein; Provisional | 0.003 | |
cd04875 | 74 | cd04875, ACT_F4HF-DF, N-terminal ACT domain of formylte | 6e-12 | |
PLN02285 | 334 | PLN02285, PLN02285, methionyl-tRNA formyltransferase | 2e-09 | |
PRK06988 | 312 | PRK06988, PRK06988, putative formyltransferase; Provisi | 7e-05 |
>gnl|CDD|180354 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>gnl|CDD|183839 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase | Back alignment and domain information |
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>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase | Back alignment and domain information |
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>gnl|CDD|31131 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30647 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase | Back alignment and domain information |
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>gnl|CDD|38286 KOG3076, KOG3076, KOG3076, 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
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>gnl|CDD|30572 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent | Back alignment and domain information |
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>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase | Back alignment and domain information |
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>gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase | Back alignment and domain information |
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>gnl|CDD|38292 KOG3082, KOG3082, KOG3082, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed | Back alignment and domain information |
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>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
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>gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional | Back alignment and domain information |
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>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
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>gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase | Back alignment and domain information |
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>gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | ||
TIGR00655 | 294 | PurU formyltetrahydrofolate deformylase; InterPro: IPR0 | 100.0 | |
PRK06027 | 285 | purU formyltetrahydrofolate deformylase; Reviewed | 100.0 | |
PRK13011 | 287 | formyltetrahydrofolate deformylase; Reviewed | 100.0 | |
PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 100.0 | |
COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide trans | 100.0 | |
PRK10538 | 248 | 3-hydroxy acid dehydrogenase; Provisional | 90.69 | |
TIGR00639 | 215 | PurN phosphoribosylglycinamide formyltransferase; Inter | 100.0 | |
PRK05647 | 200 | purN phosphoribosylglycinamide formyltransferase; Revie | 100.0 | |
COG0299 | 200 | PurN Folate-dependent phosphoribosylglycinamide formylt | 100.0 | |
KOG3076 | 206 | consensus | 100.0 | |
pfam00551 | 181 | Formyl_trans_N Formyl transferase. This family includes | 100.0 | |
PRK00005 | 309 | fmt methionyl-tRNA formyltransferase; Reviewed | 99.96 | |
PRK06988 | 313 | putative formyltransferase; Provisional | 99.95 | |
PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-am | 99.95 | |
COG0223 | 307 | Fmt Methionyl-tRNA formyltransferase [Translation, ribo | 99.95 | |
KOG2452 | 881 | consensus | 99.34 | |
TIGR00460 | 385 | fmt methionyl-tRNA formyltransferase; InterPro: IPR0057 | 99.89 | |
PRK07579 | 245 | hypothetical protein; Provisional | 99.84 | |
KOG3082 | 338 | consensus | 99.7 | |
cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofo | 99.84 | |
PRK00194 | 90 | hypothetical protein; Validated | 99.43 | |
cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet unchara | 99.33 | |
COG3830 | 90 | ACT domain-containing protein [Signal transduction mech | 98.94 | |
cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphoserine | 98.87 | |
cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine Cleava | 98.86 | |
PRK11589 | 183 | gcvR glycine cleavage system transcriptional repressor; | 98.56 | |
cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine Cleava | 98.53 | |
pfam01842 | 66 | ACT ACT domain. This family of domains generally have a | 98.0 | |
cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet uncharacter | 97.93 | |
COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [Amino | 97.58 | |
LOAD_ACT | 76 | consensus | 97.3 | |
cd02116 | 60 | ACT ACT domains are commonly involved in specifically b | 97.07 | |
cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofunctional, | 96.85 | |
cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the RelA/S | 96.82 | |
cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegradativ | 96.72 | |
cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacter | 96.55 | |
cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus subtilis | 96.37 | |
cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is compos | 96.21 | |
PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Reviewed | 96.13 | |
cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT | 96.0 | |
cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehydrata | 95.72 | |
cd04871 | 84 | ACT_PSP_2 ACT domains found N-terminal of phosphoserine | 95.68 | |
PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Validated | 95.67 | |
cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal AC | 95.57 | |
cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3 | 95.37 | |
cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunctional ch | 95.36 | |
cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-termina | 95.15 | |
PRK08577 | 135 | hypothetical protein; Provisional | 94.83 | |
cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia coli | 94.81 | |
cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensi | 94.74 | |
cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-depend | 94.56 | |
KOG2663 | 309 | consensus | 94.45 | |
) and D-serine dehydratase ( | 381 | ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 | 94.05 | |
cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-termina | 93.93 | |
CHL00100 | 172 | ilvH acetohydroxyacid synthase small subunit | 93.28 | |
PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; Review | 93.26 | |
cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Pho | 93.08 | |
COG2150 | 167 | Predicted regulator of amino acid metabolism, contains | 92.91 | |
cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine beta | 92.86 | |
PRK04435 | 146 | hypothetical protein; Provisional | 92.66 | |
PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provisional | 92.35 | |
cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a. | 91.84 | |
COG4492 | 150 | PheB ACT domain-containing protein [General function pr | 90.57 | |
cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monofuncti | 90.56 | |
PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; Provis | 90.08 | |
PRK11589 | 183 | gcvR glycine cleavage system transcriptional repressor; | 98.62 | |
COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [Amino | 97.96 | |
COG1707 | 218 | ACT domain-containing protein [General function predict | 97.48 | |
cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial signal-tr | 96.81 | |
PRK03381 | 781 | PII uridylyl-transferase; Provisional | 96.64 | |
cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, inclu | 96.2 | |
TIGR01693 | 903 | UTase_glnD protein-P-II uridylyltransferase; InterPro: | 95.67 | |
PRK05092 | 934 | PII uridylyl-transferase; Provisional | 95.63 | |
PRK00275 | 894 | glnD PII uridylyl-transferase; Provisional | 95.58 | |
PRK01759 | 862 | glnD PII uridylyl-transferase; Provisional | 95.27 | |
cd04894 | 69 | ACT_ACR-like_1 ACT domain-containing protein which is c | 94.9 | |
PRK04374 | 869 | PII uridylyl-transferase; Provisional | 94.86 | |
PRK05007 | 881 | PII uridylyl-transferase; Provisional | 94.73 | |
cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain of an | 94.61 | |
PRK03059 | 857 | PII uridylyl-transferase; Provisional | 94.33 | |
cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is compos | 94.01 | |
COG2844 | 867 | GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttr | 91.51 | |
cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type of AC | 91.07 | |
cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel protein c | 90.2 | |
PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bi | 96.48 | |
COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases/synt | 92.75 | |
PRK13581 | 524 | D-3-phosphoglycerate dehydrogenase; Provisional | 91.28 | |
PRK10820 | 513 | DNA-binding transcriptional regulator TyrR; Provisional | 95.95 | |
COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) subunit | 95.23 | |
PRK08198 | 406 | threonine dehydratase; Provisional | 95.91 | |
PRK07334 | 399 | threonine dehydratase; Provisional | 95.5 | |
TIGR00289 | 227 | TIGR00289 conserved hypothetical protein TIGR00289; Int | 94.65 | |
pfam01902 | 219 | ATP_bind_4 ATP-binding region. This family of proteins | 94.24 | |
PRK08639 | 418 | threonine dehydratase; Validated | 92.69 | |
TIGR03590 | 280 | PseG pseudaminic acid biosynthesis-associated protein P | 92.5 | |
cd01994 | 194 | Alpha_ANH_like_IV This is a subfamily of Adenine nucleo | 92.09 | |
cd00887 | 394 | MoeA MoeA family. Members of this family are involved i | 90.02 | |
PRK06349 | 432 | homoserine dehydrogenase; Provisional | 95.58 | |
PRK03059 | 857 | PII uridylyl-transferase; Provisional | 92.53 | |
PRK06545 | 357 | prephenate dehydrogenase; Validated | 95.51 | |
PRK06382 | 400 | threonine dehydratase; Provisional | 95.36 | |
PRK08526 | 403 | threonine dehydratase; Provisional | 93.95 | |
PRK05007 | 881 | PII uridylyl-transferase; Provisional | 93.79 | |
PRK05092 | 934 | PII uridylyl-transferase; Provisional | 94.57 | |
COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine tr | 91.09 | |
pfam01171 | 182 | ATP_bind_3 PP-loop family. This family of proteins belo | 94.11 | |
cd01992 | 185 | PP-ATPase N-terminal domain of predicted ATPase of the | 93.54 | |
cd01993 | 185 | Alpha_ANH_like_II This is a subfamily of Adenine nucleo | 92.62 | |
cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, | 92.26 | |
cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, | 91.57 | |
PRK10680 | 411 | molybdopterin biosynthesis protein MoeA; Provisional | 91.55 | |
cd05017 | 119 | SIS_PGI_PMI_1 The members of this protein family contai | 90.18 |
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised | Back alignment and domain information |
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>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
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>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PRK10538 3-hydroxy acid dehydrogenase; Provisional | Back alignment and domain information |
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>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607 This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase | Back alignment and domain information |
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>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
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>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] | Back alignment and domain information |
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>KOG3076 consensus | Back alignment and domain information |
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>pfam00551 Formyl_trans_N Formyl transferase | Back alignment and domain information |
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>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed | Back alignment and domain information |
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>PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
---|
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
---|
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>KOG2452 consensus | Back alignment and domain information |
---|
>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2 | Back alignment and domain information |
---|
>PRK07579 hypothetical protein; Provisional | Back alignment and domain information |
---|
>KOG3082 consensus | Back alignment and domain information |
---|
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
---|
>PRK00194 hypothetical protein; Validated | Back alignment and domain information |
---|
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
---|
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
---|
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
---|
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
---|
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
---|
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
---|
>pfam01842 ACT ACT domain | Back alignment and domain information |
---|
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
---|
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>LOAD_ACT consensus | Back alignment and domain information |
---|
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
---|
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
---|
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
---|
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
---|
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
---|
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
---|
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
---|
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
---|
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
---|
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
---|
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
---|
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
---|
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
---|
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
---|
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
---|
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
---|
>PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
---|
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
---|
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
---|
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
---|
>KOG2663 consensus | Back alignment and domain information |
---|
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes | Back alignment and domain information |
---|
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
---|
>CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
---|
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
---|
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
---|
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
---|
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
---|
>PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
---|
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
---|
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
---|
>COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
---|
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
---|
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
---|
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
---|
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
---|
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
---|
>PRK03381 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
---|
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system | Back alignment and domain information |
---|
>PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>PRK00275 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
---|
>PRK04374 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
---|
>PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
---|
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
---|
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
---|
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
---|
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
---|
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
---|
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
---|
>PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
---|
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function | Back alignment and domain information |
---|
>pfam01902 ATP_bind_4 ATP-binding region | Back alignment and domain information |
---|
>PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
---|
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
---|
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
---|
>cd00887 MoeA MoeA family | Back alignment and domain information |
---|
>PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
---|
>PRK03059 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
---|
>PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
---|
>PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
---|
>PRK05007 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>PRK05092 PII uridylyl-transferase; Provisional | Back alignment and domain information |
---|
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
>pfam01171 ATP_bind_3 PP-loop family | Back alignment and domain information |
---|
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] | Back alignment and domain information |
---|
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
---|
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
---|
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
---|
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional | Back alignment and domain information |
---|
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | ||
3obi_A | 288 | Crystal Structure Of A Formyltetrahydrofolate Defor | 9e-76 | |
3o1l_A | 302 | Crystal Structure Of A Formyltetrahydrofolate Defor | 1e-74 | |
3nrb_A | 287 | Crystal Structure Of A Formyltetrahydrofolate Defor | 6e-73 | |
3lou_A | 292 | Crystal Structure Of Formyltetrahydrofolate Deformy | 3e-68 | |
3n0v_A | 286 | Crystal Structure Of A Formyltetrahydrofolate Defor | 2e-66 | |
2ywr_A | 216 | Crystal Structure Of Gar Transformylase From Aquife | 2e-41 | |
3kcq_A | 215 | Crystal Structure Of Phosphoribosylglycinamide Form | 1e-38 | |
1cdd_A | 212 | Structures Of Apo And Complexed Escherichia Coli Gl | 1e-36 | |
1grc_A | 212 | Crystal Structure Of Glycinamide Ribonucleotide Tra | 1e-36 | |
1c3e_A | 209 | New Insights Into Inhibitor Design From The Crystal | 1e-36 | |
2gar_A | 212 | A Ph-Dependent Stablization Of An Active Site Loop | 1e-36 | |
1zly_A | 203 | The Structure Of Human Glycinamide Ribonucleotide T | 1e-35 | |
1meo_A | 209 | Human Glycinamide Ribonucleotide Transformylase At | 1e-35 | |
1zlx_A | 203 | The Apo Structure Of Human Glycinamide Ribonucleoti | 3e-35 | |
1mej_B | 223 | Human Glycinamide Ribonucleotide Transformylase Dom | 4e-35 | |
3p9x_A | 211 | Crystal Structure Of Phosphoribosylglycinamide Form | 2e-34 | |
3da8_A | 215 | Crystal Structure Of Purn From Mycobacterium Tuberc | 5e-23 | |
1s3i_A | 310 | Crystal Structure Of The N Terminal Hydrolase Domai | 3e-12 | |
2bw0_A | 329 | Crystal Structure Of The Hydrolase Domain Of Human | 1e-11 | |
3rfo_A | 317 | Crystal Structure Of Methyionyl-Trna Formyltransfer | 7e-11 | |
2bln_A | 305 | N-Terminal Formyltransferase Domain Of Arna In Comp | 1e-09 | |
1yrw_A | 302 | Crystal Structure Of E.Coli Arna Transformylase Dom | 1e-09 | |
1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 2e-09 | |
3r8x_A | 318 | Crystal Structure Of Methionyl-Trna Formyltransfera | 2e-09 | |
1fmt_A | 314 | Methionyl-Trnafmet Formyltransferase From Escherich | 1e-08 | |
3q0i_A | 318 | Methionyl-Trna Formyltransferase From Vibrio Choler | 2e-07 | |
1zpv_A | 91 | Act Domain Protein From Streptococcus Pneumoniae Le | 2e-04 |
>gi|303325207|pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 | Back alignment and structure |
Score = 288 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 116/281 (41%), Positives = 169/281 (60%), Gaps = 4/281 (1%) Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT---CMKL 59 Y+LT++CP I S + +L G NILD Q+ND ++ F R+ F + Sbjct: 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLAS 65 Query: 60 FIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSN 119 F I +F+ + R+ + K +LVSQ DHCL D+LYRW +G L +VSN Sbjct: 66 LRTGFGVIAAKFTXGWHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSN 125 Query: 120 HTTHKKLVENYQ-LPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLCH 178 H ++ +PFY+ P+ + + + E + +I + + +L++LARY QILSD Sbjct: 126 HPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQILSDEXSA 185 Query: 179 KMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVTH 238 ++ GR INIHHSFLP FKGA PY QA++ GVK+IGATAHY LD GPII+QDV R++H Sbjct: 186 RLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISH 245 Query: 239 AQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 T D + G++IE +VL++A++ H+ RV +N RKT+VF Sbjct: 246 RDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVF 286 |
>gi|306991895|pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 | Back alignment and structure |
>gi|301598784|pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 | Back alignment and structure |
>gi|289526942|pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (Yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 | Back alignment and structure |
>gi|298508708|pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (P From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 | Back alignment and structure |
>gi|159795629|pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 | Back alignment and structure |
>gi|281307158|pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 | Back alignment and structure |
>gi|809280|pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 | Back alignment and structure |
gi|442965|pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 | Back alignment and structure |
>gi|6730124|pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 | Back alignment and structure |
>gi|157835027|pdb|2GAR|A Chain A, A Ph-Dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 | Back alignment and structure |
>gi|75765818|pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,Beta-N- (Hydroxyacetyl)-D-Ribofuranosylamine And 10-Formyl-5,8, Dideazafolate Length = 203 | Back alignment and structure |
>gi|27573895|pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 | Back alignment and structure |
>gi|75765817|pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 | Back alignment and structure |
>gi|27573889|pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 | Back alignment and structure |
>gi|319443711|pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 | Back alignment and structure |
>gi|237640472|pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 | Back alignment and structure |
>gi|42543697|pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of 10- Formyltetrahydrofolate Dehydrogenase Length = 310 | Back alignment and structure |
>gi|73536304|pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10- Formyltetrahydrofolate 2 Dehydrogenase Length = 329 | Back alignment and structure |
>gi|329666301|pdb|3RFO|A Chain A, Crystal Structure Of Methyionyl-Trna Formyltransferase From Bacillus Anthracis Length = 317 | Back alignment and structure |
>gi|66361563|pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex With N-5-Formyltetrahydrofolate And Ump Length = 305 | Back alignment and structure |
>gi|66361188|pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain Length = 302 | Back alignment and structure |
gi|71042200|pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
>gi|328877395|pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From Yersinia Pestis Complexed With L-Methionine Length = 318 | Back alignment and structure |
>gi|2914332|pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 | Back alignment and structure |
>gi|315583678|pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae Length = 318 | Back alignment and structure |
>gi|71042427|pdb|1ZPV|A Chain A, Act Domain Protein From Streptococcus Pneumoniae Length = 91 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | ||
3lou_A | 292 | Formyltetrahydrofolate deformylase; structural genomics | 2e-73 | |
3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural genomics | 1e-62 | |
3obi_A | 288 | Formyltetrahydrofolate deformylase; structural genomics | 7e-61 | |
3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transferase, | 2e-59 | |
3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT doma | 2e-59 | |
1jkx_A | 212 | GART;, phosphoribosylglycinamide formyltransferase; pur | 8e-36 | |
3kcq_A | 215 | Phosphoribosylglycinamide formyltransferase; structural | 2e-34 | |
1meo_A | 209 | Phosophoribosylglycinamide formyltransferase; purine bi | 6e-32 | |
2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossmann f | 8e-27 | |
1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator tRNA, | 2e-25 | |
3da8_A | 215 | Probable 5'-phosphoribosylglycinamide formyltransferase | 3e-18 | |
1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrolase; H | 3e-17 | |
1zpv_A | 91 | ACT domain protein; structural genomics, PSI, protein s | 7e-08 | |
2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nuc | 3e-06 | |
1zgh_A | 260 | Methionyl-tRNA formyltransferase; southeast collaborato | 6e-05 | |
1u8s_A | 192 | Glycine cleavage system transcriptional repressor, puta | 3e-04 | |
2nyi_A | 195 | Unknown protein; protein structure initiative, PSI, cen | 0.002 |
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 | Back alignment and structure |
---|
Score = 271 bits (693), Expect = 2e-73 Identities = 116/282 (41%), Positives = 175/282 (62%), Gaps = 5/282 (1%) Query: 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNTCMKLFIA 62 ++LT++CPS + + L C + +++ F+D +++ F+R F Sbjct: 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRV 69 Query: 63 D-----FQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVV 117 D F+PI ++F +Q++I + K LI+VS+ +HCL DLL+RW +G L ++IVG+V Sbjct: 70 DALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIV 129 Query: 118 SNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEKNNVELMILARYMQILSDHLC 177 SNH L + LPF + P+T K + E + +++ E + EL+ILARYMQ+LS Sbjct: 130 SNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQVLSPEAS 189 Query: 178 HKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 ++ R INIHHSFLP FKGA PY QA+ GVK+IGATAH+ +LD GPIIEQ V RV Sbjct: 190 ARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVD 249 Query: 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVF 279 H+ E +A+G+++E L +AV A I++RVF+N +T+VF Sbjct: 250 HSYRPEQLLAVGRDVECITLARAVKAFIERRVFLNGDRTVVF 291 |
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 | Back alignment and structure |
---|
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 | Back alignment and structure |
---|
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 | Back alignment and structure |
---|
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 | Back alignment and structure |
---|
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 | Back alignment and structure |
---|
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Length = 215 | Back alignment and structure |
---|
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 | Back alignment and structure |
---|
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 | Back alignment and structure |
---|
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Length = 314 | Back alignment and structure |
---|
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 | Back alignment and structure |
---|
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
---|
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 Length = 91 | Back alignment and structure |
---|
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 | Back alignment and structure |
---|
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 Length = 260 | Back alignment and structure |
---|
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192 | Back alignment and structure |
---|
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 288 | formyltetrahydrofolate deformylase [Candidatus Liberiba | ||
3lou_A | 292 | Formyltetrahydrofolate deformylase; structural genomics | 100.0 | |
3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural genomics | 100.0 | |
3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transferase, | 100.0 | |
3obi_A | 288 | Formyltetrahydrofolate deformylase; structural genomics | 100.0 | |
3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT doma | 100.0 | |
2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossmann f | 100.0 | |
1jkx_A | 212 | GART;, phosphoribosylglycinamide formyltransferase; pur | 100.0 | |
3kcq_A | 215 | Phosphoribosylglycinamide formyltransferase; structural | 100.0 | |
3da8_A | 215 | Probable 5'-phosphoribosylglycinamide formyltransferase | 100.0 | |
1meo_A | 209 | Phosophoribosylglycinamide formyltransferase; purine bi | 100.0 | |
1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrolase; H | 99.97 | |
2bln_A | 305 | Protein YFBG; transferase, formyltransferase, L-ARA4N b | 99.97 | |
1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator tRNA, | 99.96 | |
2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nuc | 99.96 | |
1zgh_A | 260 | Methionyl-tRNA formyltransferase; southeast collaborato | 99.87 | |
2c82_A | 413 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870 | 90.31 | |
2nyi_A | 195 | Unknown protein; protein structure initiative, PSI, cen | 99.71 | |
1u8s_A | 192 | Glycine cleavage system transcriptional repressor, puta | 99.48 | |
1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, prote | 97.98 | |
1zpv_A | 91 | ACT domain protein; structural genomics, PSI, protein s | 99.63 | |
1u8s_A | 192 | Glycine cleavage system transcriptional repressor, puta | 98.88 | |
2nyi_A | 195 | Unknown protein; protein structure initiative, PSI, cen | 98.52 | |
2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, | 97.79 | |
3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural geno | 97.66 | |
2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory subuni | 96.82 | |
2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; ferred | 96.7 | |
2pc6_A | 165 | Probable acetolactate synthase isozyme III (small subun | 95.44 | |
3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural geno | 98.96 | |
3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, str | 95.82 | |
1ni5_A | 433 | Putative cell cycle protein MESJ; structural genomics, | 93.16 | |
2der_A | 380 | TRNA-specific 2-thiouridylase MNMA; protein-RNA complex | 90.27 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductas | 95.75 | |
2yut_A | 207 | Putative short-chain oxidoreductase; alpha and beta pro | 91.98 | |
2f06_A | 144 | Conserved hypothetical protein; structural genomics hyp | 94.36 | |
1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentape | 93.6 | |
2qmx_A | 283 | Prephenate dehydratase; APC86053, L-Phe inhibition, PDT | 91.45 | |
2f06_A | 144 | Conserved hypothetical protein; structural genomics hyp | 90.5 | |
1wy5_A | 317 | TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP- | 93.9 | |
3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligas | 91.31 | |
3luy_A | 329 | Probable chorismate mutase; structural genomics, APC380 | 91.5 |
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=664.41 Aligned_cols=278 Identities=41% Similarity=0.765 Sum_probs=272.5 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCC-----CHHHHHHHHHHHHCCCCCCEEC Q ss_conf 49999985998766888999998579818973444324368899999997288-----5277798889874002320201 Q gi|254780911|r 3 SYILTITCPSNEEITSIIPDYLSTQGCNILDISQFNDLDTSKLFMRISFVFNT-----CMKLFIADFQPIVQQFSLQYSI 77 (288) Q Consensus 3 ~~iLti~CpD~~GIVA~VT~~La~~g~NI~~~~Q~~D~~~~~FFmRi~f~~~~-----~~~~l~~~f~~ia~~~~m~~~i 77 (288) +||||++||||+||||+||+||+++||||++++||+|.++++||||++|+... ..+.++++|.+++++|+|+|++ T Consensus 10 ~~iL~i~CpD~~GiVa~vs~~l~~~g~nI~~~~qf~D~~~~~FFmR~~f~~~~~~~~~~~~~l~~~~~~~a~~~~m~~~~ 89 (292) T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWAI 89 (292) T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEEE T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEC T ss_conf 38999989998864999999999789999787344488888078989997268854338899999988666543872330 Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 24456553899970886798999986204674158999997734667778860997474168733527767899999733 Q gi|254780911|r 78 RNTKEATKTLILVSQPDHCLNDLLYRWNIGTLALNIVGVVSNHTTHKKLVENYQLPFYYLPMTEQNKIESEQKLINIIEK 157 (288) Q Consensus 78 ~~~~~~~riailvSg~gsnL~~Ll~~~~~g~L~~eI~~VISN~~d~~~lA~~~gIP~~~i~~~~~~k~~~e~~il~~l~~ 157 (288) ++.+.|+|+|||+||+||||++||+++++|+|+++|++|||||++++++|+.+++|+++++.++.+|+++|+++++++++ T Consensus 90 ~~~~~~~riavlvSg~g~~L~~Ll~~~~~g~L~~eI~~ViSN~~~~~~l~~a~~ip~~~~~~~~~~~~~~e~~~~~~l~~ 169 (292) T 3lou_A 90 HDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFET 169 (292) T ss_dssp EETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHH T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 45456836999967998269999999976999817999974894279999975498478615876278899999999862 Q ss_pred CCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECC Q ss_conf 39409998276754887786327784796133667678999958999742683762257753055688834444466518 Q gi|254780911|r 158 NNVELMILARYMQILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPIIEQDVVRVT 237 (288) Q Consensus 158 ~~~DlivLAgymril~~~~~~~~~~~iiNiHpslLP~f~G~~~y~~A~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~~~v~ 237 (288) +++|||||||||||||++|+++|++++||+||||||+|+|++||++|+.+|+|.+|||+|||++++|+||||+|+.++|+ T Consensus 170 ~~~Dlivlagym~Il~~~~l~~~~~~iiNiHpSlLP~~~G~~~~~~ai~~g~k~~G~TvH~v~~~lD~GpII~Q~~~~I~ 249 (292) T 3lou_A 170 SGAELVILARYMQVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVD 249 (292) T ss_dssp HTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECC T ss_pred CCCEEEEHHHHCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECC T ss_conf 49809984781341770633216785599656866233788818899977995799999999489837980699998749 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECC Q ss_conf 8889999999999999999999999987691788688579808 Q gi|254780911|r 238 HAQTIEDYIAIGKNIEAKVLTKAVNAHIQQRVFINKRKTIVFP 280 (288) Q Consensus 238 ~~dt~~~l~~~~~~~E~~~l~~av~~~~e~rv~~~~~ktvvf~ 280 (288) ++||+++|.+|++++|+++|++||++++|+||+++|||||||. T Consensus 250 ~~dt~~~L~~~~~~~E~~~l~~ai~~~~e~rv~~~~~ktvvF~ 292 (292) T 3lou_A 250 HSYRPEQLLAVGRDVECITLARAVKAFIERRVFLNGDRTVVFQ 292 (292) T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEECC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEC T ss_conf 9999999999999999999999999998199899099889969 |
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
---|
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
---|
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
---|
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
---|
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} | Back alignment and structure |
---|
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* | Back alignment and structure |
---|
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* | Back alignment and structure |
---|
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* | Back alignment and structure |
---|
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
---|
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A | Back alignment and structure |
---|
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* | Back alignment and structure |
---|
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A | Back alignment and structure |
---|
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 | Back alignment and structure |
---|
>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* | Back alignment and structure |
---|
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
---|
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
---|
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
---|
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 | Back alignment and structure |
---|
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
---|
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
---|
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
---|
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
---|
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
---|
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
---|
>2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
---|
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
---|
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
---|
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 | Back alignment and structure |
---|
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* | Back alignment and structure |
---|