254780981
hypothetical protein CLIBASIA_04410
| GeneID in NCBI database: | 8210003 | Locus tag: | CLIBASIA_04410 |
| Protein GI in NCBI database: | 254780981 | Protein Accession: | YP_003065394.1 |
| Gene range: | -(979331, 979699) | Protein Length: | 122aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | not defined as a protein in SEED | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in KEGG: | not defined | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 122 | hypothetical protein CLIBASIA_04410 [Candidatus Liberib | |||
| 254780984 | 125 | hypothetical protein CLIBASIA_04425 [Candidatus Li | 3e-07 | ||
| 254780537 | 294 | periplasmic solute binding protein [Candidatus Lib | 0.011 |
| >gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62] Length = 125 | Back alignment |
|---|
Score = 45.8 bits (107), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 1 MKKYFTILTMLFVSSAIN---------PCGIEEDNLKSSPLPHIA--LESLSAENEK--K 47
MKKY T+LT+L +S+ +N P E+ + + P + L L AENEK K
Sbjct: 1 MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
Query: 48 ELSEHEKKVIESQENPKKQFSEHEKKETDD 77
E + +++ EN KK F EHEKK T +
Sbjct: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSN 90
|
| >gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 | Back alignment |
|---|
Score = 30.4 bits (67), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 3 KYFTILT----MLFVSSAINPCGIEED-NLKSSPLPHIALESLSA----ENEKKELSEHE 53
KYFT L ++ V+ INP G+ ED ++ S P PH + +A EN +K L+ +
Sbjct: 89 KYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALD 148
Query: 54 KKVIESQENPKKQFSE 69
+ E +++SE
Sbjct: 149 PSNAKKYELNAREYSE 164
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 122 | hypothetical protein CLIBASIA_04410 [Candidatus Liberib | |||
| 254780984 | 125 | hypothetical protein CLIBASIA_04425 [Candidatus Liberib | 1 | 0.002 |
| >gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62] Length = 125 | Back alignment and organism information |
|---|
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 1 MKKYFTILTMLFVSSAIN---------PCGIEEDNLKSSPLPHIA--LESLSAENEK--K 47
MKKY T+LT+L +S+ +N P E+ + + P + L L AENEK K
Sbjct: 1 MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
Query: 48 ELSEHEKKVIESQENPKKQFSEHEKKETDD 77
E + +++ EN KK F EHEKK T +
Sbjct: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSN 90
|
Species: Candidatus Liberibacter asiaticus Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 122 | hypothetical protein CLIBASIA_04410 [Candidatus Liberib | ||
| 3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated PIT, | 3e-05 |
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-05
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 23 EEDNLKSSPLPHIALESLSA--ENEKKELSEHE--KKVIESQ--ENPKKQFSEHEKKETD 76
+ D L P ES+ E ++K L E + KV+E + E KK E +++++
Sbjct: 76 QADRLTQEP------ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 77 DPKSARKENIVMKKTFSQK 95
+ + N + K F Q+
Sbjct: 130 QVEKNKINNRIADKAFYQQ 148
|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 122 | hypothetical protein CLIBASIA_04410 [Candidatus Li | ||
| 1m1j_A_119-491 | 373 | (A:119-491) Fibrinogen alpha subunit; coiled coils | 0.004 |
| >1m1j_A (A:119-491) Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}Length = 373 | Back alignment and structure |
|---|
Score = 34.9 bits (78), Expect = 0.004
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 43 ENEKKELSEHEKKVIESQENPKKQFSEHEKKETD-DPKSARKENIVMKKTFSQKSKKYTP 101
K+ ++ ++ Q + ++Q E ++ E D D K + + Q K+
Sbjct: 3 VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYD 62
Query: 102 YFDHYMTNGHLNLPQNNG 119
++T +
Sbjct: 63 NIQKHLTQASSIDMHPDF 80
|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00