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Summary
Structure view
Domain organization
Domain ID e1q8iA4
Download files:
FASTA
Coordinates
A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_B
UID:
000005352
ID:
e1q8iA4
Source structure type:
experimental structure
ECOD representative type:
Manual
and representative
domain
Range:
A:390-464,A:508-636
PDB:
1q8i
PDB Description:
DNA polymerase II
Domain
In chain context
In PDB context
Structure of domain e1q8iA4
Domains in the same protein:
Download Pymol
e1q8iA2
A:465-507
"fingers" domain in bacteriophage RB69-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q8iA3
A:639-684,A:745-783
"thumb" domain in bacteriophage RB69-like DNA polymerase I
"thumb" domain in bacteriophage RB69-like DNA polymerase I
"thumb" domain in bacteriophage RB69-like DNA polymerase I
e1q8iA4
A:390-464,A:508-636
Alpha-beta plaits
Adenylyl and guanylyl cyclase catalytic domain-like
Adenylyl and guanylyl cyclase catalytic domain-like
e1q8iA5
A:40-108
Alpha-beta plaits
Family B DNA polymerase insertion domain
Family B DNA polymerase insertion domain
e1q8iA6
A:150-389
Ribonuclease H-like
Ribonuclease H-like
Ribonuclease H-like
e1q8iA1
A:2-39,A:109-149
OB-fold
Nucleic acid-binding protein
Nucleic acid-binding protein
Domains in the same PDB:
e1q8iA2
A:465-507
"fingers" domain in bacteriophage RB69-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q8iA3
A:639-684,A:745-783
"thumb" domain in bacteriophage RB69-like DNA polymerase I
"thumb" domain in bacteriophage RB69-like DNA polymerase I
"thumb" domain in bacteriophage RB69-like DNA polymerase I
e1q8iA4
A:390-464,A:508-636
Alpha-beta plaits
Adenylyl and guanylyl cyclase catalytic domain-like
Adenylyl and guanylyl cyclase catalytic domain-like
e1q8iA5
A:40-108
Alpha-beta plaits
Family B DNA polymerase insertion domain
Family B DNA polymerase insertion domain
e1q8iA6
A:150-389
Ribonuclease H-like
Ribonuclease H-like
Ribonuclease H-like
e1q8iA1
A:2-39,A:109-149
OB-fold
Nucleic acid-binding protein
Nucleic acid-binding protein