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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: ClpS-like

contains a HTH motif

X: Enolase-N/ribosomal protein
H: Prokaryotic ribosomal protein L17
T: Prokaryotic ribosomal protein L17
F: Ribosomal_L17

PF01196

Representatives:

e1gd8A1[A:14-118] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

50S RIBOSOMAL PROTEIN L17 ; X-RAY DIFFRACTION 2.3Å

e2cqmA1[A:28-136] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Ribosomal protein L17 isolog ; SOLUTION NMR

e3j6bL1[L:2-128] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

54S ribosomal protein L8, mitochondrial ; ELECTRON MICROSCOPY

e4v19R1[R:9-161] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MITORIBOSOMAL PROTEIN BL17M, MRPL17 ; ligands: MG ; ELECTRON MICROSCOPY

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes