Evolutionary Classification of Protein Domains

Browse ECOD classification as tree or download distributable files. The classification currently includes only proteins with experimentally determined spatial structures.

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ECOD was updated on Tue Jul 12 16:37:01 CDT 2016 and contains 119,887 PDB structures released before 07/01/2016.

ECOD is a hierarchical classification of protein domains according to their evolutionary relationships. Only proteins with experimentally determined spatial structures from the PDB database are currently classified in ECOD. Compared with other classification databases, such as SCOP and CATH, ECOD emphasizes on distant evolutionary relationships and updates every week to include new structures released in PDB. Due to the delay of PDB FTP release and time needed to classify new domains, ECOD usually falls two to three weeks behind the PDB. Next update is expected on or before 07/28/2016.

Please cite the following reference:

H. Cheng, R. D. Schaeffer, Y. Liao, L. N. Kinch, J. Pei, S. Shi, B. H. Kim, N. V. Grishin. (2014) ECOD: An evolutionary classification of protein domains. PLoS Comput Biol 10(12): e1003926.

H. Cheng, Y. Liao, R. D. Schaeffer, N. V. Grishin. (2015) Manual classification strategies in the ECOD database. Proteins 83(7): 1238-1251.

ECOD statistics (history)
119,887PDBs
355,187PDB chains
497,997Domains
2,140X-groups
3,382H-groups
13,213F-groups
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