Home Help

X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


Keyword search


Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: Reverse ferredoxin
H: RuBisCO, small subunit
T: RuBisCO, small subunit
F: RuBisCO_small

PF00101

Representatives:

e1wddS1[S:1-122] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C ; X-RAY DIFFRACTION 1.35Å

e1svdM1[M:3-110] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN ; ligands: GOL ; X-RAY DIFFRACTION 1.8Å

e1rblI1[I:2-122] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) ; X-RAY DIFFRACTION 2.2Å

e1bwvS1[S:8-155] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) ; X-RAY DIFFRACTION 2.4Å

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: ClpS-like

contains a HTH motif

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes