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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

X: Rubredoxin-like

binds one zinc with two CxxC motifs on two beta-hairpins

X: RING/U-box-like

binds two zincs. one in the same way as rubredoxin, probably related to rubredoxin. the other in a similar way as glucocorticoid receptor

X: Glucocorticoid receptor-like

binds zinc with one beta-hairpin and one helix, the helix binds DNA

X: Inhibitor of apoptosis (IAP) repeat
H: Inhibitor of apoptosis (IAP) repeat
T: Inhibitor of apoptosis (IAP) repeat
F: BIR

PF00653 CL0417

Representatives:

e2qfaA1[A:5-141] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Baculoviral IAP repeat-containing protein 5 ; ligands: MES,ZN ; X-RAY DIFFRACTION 1.4Å

e3d9tA1[A:260-346] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2 ; ligands: ZN ; X-RAY DIFFRACTION 1.5Å

e1se0A1[A:39-135] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Apoptosis 1 inhibitor ; ligands: ZN ; X-RAY DIFFRACTION 1.75Å

e1jd5A1[A:214-318] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

APOPTOSIS 1 INHIBITOR ; ligands: ZN ; X-RAY DIFFRACTION 1.9Å

e1i3oE1[E:127-237] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 ; ligands: ZN ; X-RAY DIFFRACTION 2.7Å

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes