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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

X: TorD-like (Pfam 06192)
H: TorD-like (Pfam 06192)
T: TorD-like (Pfam 06192)
F: Nitrate_red_del

PF02613

Representatives:

e1s9uA1[A:-2-204] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PUTATIVE COMPONENT OF ANAEROBIC DEHYDROGENASES ; ligands: PEG,SO4 ; X-RAY DIFFRACTION 1.38Å

Domain assembly:

e1n1cA1[A:4-210] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TorA specific chaperone , X-RAY DIFFRACTION 2.400Å

swap

e1n1cB1[B:5-214] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TorA specific chaperone , X-RAY DIFFRACTION 2.400Å

e2idgA1[A:1-160] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Hypothetical protein AF0160 ; X-RAY DIFFRACTION 2.69Å

e2o9xA1[A:1-153] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Reductase, assembly protein ; X-RAY DIFFRACTION 3.400Å

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes