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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

X: PK C-terminal domain-like
H: PK C-terminal domain-like
T: PK C-terminal domain-like
F: PK_C

PF02887

Representatives:

e1vp8A1[A:0-189] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

hypothetical protein AF0103 ; ligands: FMN,UNL ; X-RAY DIFFRACTION 1.300Å

e2g50A3[A:396-530] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate kinase isozymes M1/M2 ; ligands: ALA,EDO,NA ; X-RAY DIFFRACTION 1.650Å

e1pklA3[A:358-498] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (PYRUVATE KINASE) ; ligands: SO4 ; X-RAY DIFFRACTION 2.35Å

e1e0tA3[A:354-470] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate kinase ; ligands: SO4 ; X-RAY DIFFRACTION 2.800Å

e1a3xA3[A:367-500] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE KINASE ; X-RAY DIFFRACTION 3.0Å

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes