Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel

Refs: Structure 14, 1489-1498; Current opinion in structural biology 18, 358-365




Representatives:
Domain assembly:
e1fr3J1[J:1-67]
* nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
swap
Domain assembly:
e1gutB1[B:2-68]
* nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.5Å
Domain assembly:
Domain assembly:
e1h9rA1[A:123-199]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
MOLYBDENUM TRANSPORT PROTEIN MODE , X-RAY DIFFRACTION 1.9Å
e1h9rA2[A:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE , X-RAY DIFFRACTION 1.9Å
e1fr3I1[I:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3H1[H:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3F1[F:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3E1[E:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3L1[L:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3G1[G:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3D1[D:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3K1[K:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1fr3C1[C:1-67] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE/TUNGSTATE BINDING PROTEIN ; ligands: WO4 ; X-RAY DIFFRACTION 1.5Å
e1gugF1[F:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,NA,WO4 ; X-RAY DIFFRACTION 1.6Å
e1h9jA1[A:74-140] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM-BINDING-PROTEIN ; ligands: MOO,PO4 ; X-RAY DIFFRACTION 1.800Å
e1guoC1[C:3-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 2.5Å
e1gusE1[E:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.8Å
e1gugC1[C:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,NA,WO4 ; X-RAY DIFFRACTION 1.6Å
e1gugD1[D:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: WO4 ; X-RAY DIFFRACTION 1.6Å
e1h9mA1[A:74-140] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM-BINDING-PROTEIN ; ligands: MOO ; X-RAY DIFFRACTION 1.650Å
e1h9mB1[B:74-140] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM-BINDING-PROTEIN ; ligands: MOO ; X-RAY DIFFRACTION 1.650Å
e1gusB1[B:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MG ; X-RAY DIFFRACTION 1.8Å
e1gutE1[E:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.5Å
e1gunA1[A:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 1.83Å
e1gusA1[A:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MG ; X-RAY DIFFRACTION 1.8Å
e1gugA1[A:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: WO4 ; X-RAY DIFFRACTION 1.6Å
e1gugE1[E:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: NA,WO4 ; X-RAY DIFFRACTION 1.6Å
e1gunB1[B:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 1.83Å
e1guoA1[A:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 2.5Å
e1gutF1[F:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.5Å
e1gusC1[C:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MG ; X-RAY DIFFRACTION 1.8Å
e1guoB1[B:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 2.5Å
e1gutC1[C:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.5Å
e1gunC1[C:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 1.83Å
e1gusD1[D:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.8Å
e1gugB1[B:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: NA,WO4 ; X-RAY DIFFRACTION 1.6Å
e1gusF1[F:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CL,MG ; X-RAY DIFFRACTION 1.8Å
e1h9mB2[B:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM-BINDING-PROTEIN ; ligands: MOO ; X-RAY DIFFRACTION 1.650Å
e1h9mA2[A:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM-BINDING-PROTEIN ; ligands: MOO ; X-RAY DIFFRACTION 1.650Å
e1h9jA2[A:-3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM-BINDING-PROTEIN ; X-RAY DIFFRACTION 1.800Å
e1o7lA1[A:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; ligands: CL,MOO ; X-RAY DIFFRACTION 2.75Å
e1o7lB1[B:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; ligands: MOO ; X-RAY DIFFRACTION 2.75Å
e1o7lD1[D:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; ligands: CA,MOO ; X-RAY DIFFRACTION 2.75Å
e1h9sA1[A:123-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE ; ligands: MOO ; X-RAY DIFFRACTION 1.82Å
e1b9mA1[A:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; ligands: NI ; X-RAY DIFFRACTION 1.75Å
e1b9nB1[B:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; X-RAY DIFFRACTION 2.09Å
e1b9mB1[B:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; X-RAY DIFFRACTION 1.75Å
e1h9sB1[B:124-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE ; ligands: MOO ; X-RAY DIFFRACTION 1.82Å
e1o7lC1[C:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; ligands: MOO ; X-RAY DIFFRACTION 2.75Å
e1h9rB1[B:123-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE ; ligands: NI,WO4 ; X-RAY DIFFRACTION 1.9Å
e1b9nA1[A:127-199] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; ligands: NI ; X-RAY DIFFRACTION 2.09Å
e1o7lB2[B:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; ligands: CL ; X-RAY DIFFRACTION 2.75Å
e1o7lC2[C:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; ligands: CA,MOO ; X-RAY DIFFRACTION 2.75Å
e1o7lD2[D:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; X-RAY DIFFRACTION 2.75Å
e1h9sA2[A:200-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE ; X-RAY DIFFRACTION 1.82Å
e1b9mA2[A:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; X-RAY DIFFRACTION 1.75Å
e1b9nA2[A:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; X-RAY DIFFRACTION 2.09Å
e1o7lA2[A:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TRANSCRIPTIONAL REGULATOR MODE ; X-RAY DIFFRACTION 2.75Å
e1b9mB2[B:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; X-RAY DIFFRACTION 1.75Å
e1b9nB2[B:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (MODE) ; X-RAY DIFFRACTION 2.09Å
e1h9sB2[B:200-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE ; X-RAY DIFFRACTION 1.82Å
e1h9rB2[B:200-261] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDENUM TRANSPORT PROTEIN MODE ; X-RAY DIFFRACTION 1.9Å
e2d62A2[A:305-375] Image Pymol Jmol Links: PDB, SCOP, CATH
MULTIPLE SUGAR-BINDING TRANSPORT ATP-BINDING PROTEIN ; ligands: SO4 ; X-RAY DIFFRACTION 2.1Å
e1gunD1[D:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CA,MOO ; X-RAY DIFFRACTION 1.83Å
e1gunE1[E:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CA,MOO ; X-RAY DIFFRACTION 1.83Å
e1gunF1[F:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: CA,MOO ; X-RAY DIFFRACTION 1.83Å
e1guoD1[D:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 2.5Å
e1guoE1[E:2-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 2.5Å
e1guoF1[F:3-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MOLYBDATE BINDING PROTEIN II ; ligands: MOO ; X-RAY DIFFRACTION 2.5Å
e3d31B3[B:285-348] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Sulfate/molybdate ABC transporter, ATP-binding protein ; ligands: WO4 ; X-RAY DIFFRACTION 3.0Å
e4tquS1[S:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 3.2Å
e4tquT3[T:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 3.2Å
e4tqvC2[C:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvD2[D:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvG1[G:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvH1[H:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvK3[K:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvL3[L:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvO1[O:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4tqvP1[P:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 4.5Å
e4xigS1[S:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 3.4Å
e4xigT3[T:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 3.4Å
e4xtcS2[S:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 3.60Å
e4xtcT2[T:293-363] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AlgS ; X-RAY DIFFRACTION 3.60Å
e7cadC3[C:303-328,C:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter, ATP-binding protein SugC ; ELECTRON MICROSCOPY
e7cadD2[D:303-328,D:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter, ATP-binding protein SugC ; ELECTRON MICROSCOPY
e7caeC3[C:303-328,C:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter, ATP-binding protein SugC ; ELECTRON MICROSCOPY
e7caeD3[D:303-328,D:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter, ATP-binding protein SugC ; ELECTRON MICROSCOPY
e7cafC1[C:303-328,C:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter, ATP-binding protein SugC ; ELECTRON MICROSCOPY
e7cafD2[D:303-328,D:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter, ATP-binding protein SugC ; ELECTRON MICROSCOPY
e6yirA1[A:295-367] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Oligosaccharides import ATP-binding protein MsmX ; ligands: PGE ; X-RAY DIFFRACTION 1.67Å
e7x0qA2[A:299-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter related protein ; X-RAY DIFFRACTION 2.900Å
e7x0qB2[B:299-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ABC transporter related protein ; X-RAY DIFFRACTION 2.900Å
e8hplC3[C:303-328,C:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
e8hplD2[D:303-328,D:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
e8hpmC2[C:303-328,C:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
e8hpmD2[D:303-328,D:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
e8hpsC1[C:303-328,C:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
e8hpsD3[D:303-328,D:348-391] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
Domain assembly:

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes