Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer




Representatives:
e1xszA2[A:198-354]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
guanine nucleotide exchange protein ; X-RAY DIFFRACTION 1.41Å
e1xszB2[B:198-354] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
guanine nucleotide exchange protein ; X-RAY DIFFRACTION 1.41Å
e4c7pA2[A:198-347] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
RALF ; ligands: GOL ; X-RAY DIFFRACTION 3.1Å
e4d7rA1[A:196-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROLINE/BETAINE TRANSPORTER, RALF ; X-RAY DIFFRACTION 1.80Å
e4d7qA2[A:198-346] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
RALF, PROLINE/BETAINE TRANSPORTER ; ligands: EPE,GOL,NO3,PEG ; X-RAY DIFFRACTION 2.00Å
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes