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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

X: L-aspartase C-terminal domain-like
H: L-aspartase C-terminal domain-like
T: L-aspartase C-terminal domain-like
F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

Representatives:

e1w27A2[A:526-651] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PHENYLALANINE AMMONIA-LYASE 1 ; X-RAY DIFFRACTION 1.7Å

e4eeiA4[A:332-433] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

ADENYLOSUCCINATE LYASE ; ligands: EDO,K ; X-RAY DIFFRACTION 1.92Å

e1t6jA2[A:538-651] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.10Å

e1t6jB2[B:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.10Å

e1t6pA2[A:528-641] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1t6pB2[B:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1t6pC2[C:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1t6pD2[D:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1t6pH2[H:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1y2mB5[B:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PHENYLALANINE AMMONIA-LYASE ; X-RAY DIFFRACTION 1.6Å

e1y2mD5[D:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PHENYLALANINE AMMONIA-LYASE ; X-RAY DIFFRACTION 1.6Å

e1t6pE3[E:528-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1t6pF3[F:528-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1t6pG3[G:528-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

phenylalanine ammonia-lyase ; X-RAY DIFFRACTION 2.70Å

e1y2mA1[A:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PHENYLALANINE AMMONIA-LYASE ; X-RAY DIFFRACTION 1.6Å

e1y2mC1[C:538-651] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PHENYLALANINE AMMONIA-LYASE ; X-RAY DIFFRACTION 1.6Å

e1yisA3[A:362-385,A:419-468] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

ADENYLOSUCCINATE LYASE ; X-RAY DIFFRACTION 2.4Å

e1jswC1[C:397-417] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L-ASPARTATE AMMONIA-LYASE ; X-RAY DIFFRACTION 2.7Å

e1f1oA2[A:337-360,A:396-416] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ADENYLOSUCCINATE LYASE ; X-RAY DIFFRACTION 3.25Å

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes