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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

X: Ribosomal protein TL5/L25 C-terminal domain-like
H: Ribosomal protein TL5/L25 C-terminal domain-related
T: Ribosomal protein TL5/L25 C-terminal domain-related
F: Ribosomal_TL5_C

PF14693

Representatives:

e1feuA2[A:94-185] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; ligands: CD,MG ; X-RAY DIFFRACTION 2.3Å

e2zjrS3[S:89-175] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 2.91Å

e8fmwAX2[AX:100-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8fn2X2[X:100-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8ev61Z1[1Z:93-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.946Å

e8ev71Z2[1Z:93-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.890Å

e8fc12Z1[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.500Å

e8fc22Z1[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.500Å

e8fc32Z1[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.600Å

e8fc42Z1[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.450Å

e8fc52Z2[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.650Å

e8fc62Z1[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.350Å

e8t8b2Z1[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.650Å

e8t8c2Z2[2Z:93-201] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.600Å

e8ev72Z2[2Z:93-174] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; X-RAY DIFFRACTION 2.890Å

e8fc21Z1[1Z:93-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG ; X-RAY DIFFRACTION 2.500Å

e8fc31Z2[1Z:93-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG ; X-RAY DIFFRACTION 2.600Å

e8fc51Z2[1Z:93-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG ; X-RAY DIFFRACTION 2.650Å

e8fc61Z1[1Z:93-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG ; X-RAY DIFFRACTION 2.350Å

e8t8c1Z2[1Z:93-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG ; X-RAY DIFFRACTION 2.600Å

e5ibbD51[D5:94-103,D5:123-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 2.960Å

e2b66Z2[Z:89-177] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e2b9nZ2[Z:89-177] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e2b9pZ2[Z:89-177] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e3cf5S2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.300Å

e3dllS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.5Å

e4io9S2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.2Å

e4ioaS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.2Å

e4iocS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.6Å

e3pioS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.2473Å

e3pipS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.45Å

e1pnuT2[T:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e1pnyT2[T:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e1vorW2[W:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e1yl3V2[V:89-177] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e2zjpS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.700Å

e2zjqS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L25 ; X-RAY DIFFRACTION 3.3Å

e1voyW3[W:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e1vouW3[W:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e1vowW3[W:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e1vp0W3[W:89-173] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4v4pAV1[AV:89-177] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S general stress protein CTC (L25) ; X-RAY DIFFRACTION 5.50Å

e4wzoH82[H8:93-103,H8:123-167] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.300Å

e4u67S1[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.65Å

e5dm6S2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 2.90Å

e5dm7S1[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.00Å

e4wfnS2[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.54Å

e5e7kD51[D5:93-102,D5:123-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.200Å

e5el6D51[D5:93-102,D5:123-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.100Å

e5el7D52[D5:93-102,D5:123-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.050Å

e5e81D52[D5:93-103,D5:123-171] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 2.950Å

e5el4D52[D5:93-102,D5:123-166] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.150Å

e5el5D51[D5:93-102,D5:123-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.150Å

e4wceS2[S:98-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.510Å

e4wf9S2[S:98-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.400Å

e4wfaS2[S:98-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.400Å

e4wfbS1[S:98-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.430Å

e5dm8S1[S:89-175] Image Pymol Jmol Links: PDB, SCOP, CATH

e5jvgS1[S:89-180] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.350Å

e5jvhS1[S:89-179] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ligands: 6O1 ; X-RAY DIFFRACTION 3.580Å

e5hl7S1[S:98-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.550Å

e5hkvS1[S:98-169] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.64Å

e5nrgS2[S:98-176] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.442Å

e5o60W1[W:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5o61W1[W:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5v7qV2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5v93V2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5xymV2[V:103-183] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e6dziW1[W:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e6dzpW1[W:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5zebW2[W:103-193] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5zepW1[W:103-191] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e5zetW2[W:103-193] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7a0rS2[S:87-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.300Å

e7a0sS2[S:87-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.210Å

e7a18S2[S:87-175] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; X-RAY DIFFRACTION 3.300Å

e7mscV2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7mshV1[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7msmV2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7mszV1[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7mt2V2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7mt3V2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7mt7V1[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7s0sX2[X:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7f0dV2[V:101-182] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e8fr822[2:103-183] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7xamW1[W:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e7y41W2[W:103-195] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e8crxu1[u:98-181] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e8cvmu1[u:98-181] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L25 ; ELECTRON MICROSCOPY

e1njmT2[T:89-223] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GENERAL STRESS PROTEIN CTC ; X-RAY DIFFRACTION 3.6Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes