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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative

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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

X: Single-stranded right-handed beta-helix
H: Leucine-rich repeats
T: Leucine-rich repeats
F: LRR_8,LRRCT_2

PF13855 PF16920

Representatives:

e2ifgA2[A:36-191] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR ; X-RAY DIFFRACTION 3.4Å

e3rg1E2[E:26-219] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CD180 MOLECULE ; X-RAY DIFFRACTION 2.91Å

e4pbwB1[B:31-207] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NT-3 growth factor receptor ; ligands: NAG ; X-RAY DIFFRACTION 3.05Å

e4pbwC1[C:31-207] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NT-3 growth factor receptor ; ligands: NAG ; X-RAY DIFFRACTION 3.05Å

e4pbvA1[A:29-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NT-3 growth factor receptor ; ligands: NAG ; X-RAY DIFFRACTION 2.50Å

e4pbvB2[B:31-207] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NT-3 growth factor receptor ; ligands: NAG ; X-RAY DIFFRACTION 2.50Å

e4pbwA1[A:30-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NT-3 growth factor receptor ; X-RAY DIFFRACTION 3.05Å

e2ifgB2[B:36-191] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR ; X-RAY DIFFRACTION 3.4Å

e7n3tA3[A:35-191] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

High affinity nerve growth factor receptor ; ligands: NAG,SO4 ; X-RAY DIFFRACTION 1.84Å

e7n3tB2[B:35-191] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

High affinity nerve growth factor receptor ; ligands: NAG,SO4 ; X-RAY DIFFRACTION 1.84Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes