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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative

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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

X: Saposin-like
H: Saposin-like
T: Saposin-like
F: ARMET_N

PF20145 CL0707

Representatives:

e2w50A1[A:9-106] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ARMET-LIKE PROTEIN 1 ; ligands: PO4 ; X-RAY DIFFRACTION 1.60Å

e2rqyA1[A:14-112] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative uncharacterized protein ; SOLUTION NMR

e4bitA2[A:1-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CEREBRAL DOPAMINE NEUROTROPHIC FACTOR ; SOLUTION NMR

e2lpnA1[A:1-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CEREBRAL DOPAMINE NEUROTROPHIC FACTOR ; SOLUTION NMR

e2kvdA1[A:-1-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MESENCEPHALIC ASTROCYTE-DERIVED NEUROTROPHIC FACTOR ; SOLUTION NMR

e2w51A2[A:1-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN ARMET ; X-RAY DIFFRACTION 2.80Å

e6ha7C2[C:23-120] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Mesencephalic astrocyte-derived neurotrophic factor ; X-RAY DIFFRACTION 2.49Å

e6ha7D2[D:22-120] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Mesencephalic astrocyte-derived neurotrophic factor ; X-RAY DIFFRACTION 2.49Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes