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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

X: RuvA-C
H: post-HMGL domain-like
T: post-HMGL domain-like
F: PYC_OADA

PF02436 CL0597

Representatives:

e1rqbA1[A:307-415] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSCARBOXYLASE 5S SUBUNIT ; X-RAY DIFFRACTION 1.9Å

e1rqbA2[A:416-474] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSCARBOXYLASE 5S SUBUNIT ; X-RAY DIFFRACTION 1.9Å

e3bg9A3[A:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 3.0Å

e3bg9D7[D:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 3.0Å

e3bg9B7[B:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 3.0Å

e3bg9C1[C:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 3.0Å

e3bg3B7[B:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 2.800Å

e3bg3C7[C:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 2.800Å

e3bg3D6[D:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 2.800Å

e3bg3A2[A:985-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; X-RAY DIFFRACTION 2.800Å

e2nx9A1[A:408-454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

OXALOACETATE DECARBOXYLASE 2, SUBUNIT ALPHA ; X-RAY DIFFRACTION 1.7Å

e2nx9B2[B:408-454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

OXALOACETATE DECARBOXYLASE 2, SUBUNIT ALPHA ; X-RAY DIFFRACTION 1.7Å

e7wtdA4[A:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtdB3[B:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wteA1[A:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wteB4[B:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtaA4[A:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtaB1[B:985-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtaC1[C:985-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtaD3[D:985-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtbC4[C:985-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtbD4[D:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtcC2[C:985-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtcD3[D:986-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e8gk8A4[A:831-993] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.676Å

e1rqeA2[A:415-473] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSCARBOXYLASE 5S SUBUNIT ; X-RAY DIFFRACTION 2.5Å

e1rqhA2[A:415-473] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSCARBOXYLASE 5S SUBUNIT ; X-RAY DIFFRACTION 2.0Å

e1rr2A2[A:415-473] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSCARBOXYLASE 5S SUBUNIT ; X-RAY DIFFRACTION 2.0Å

e1s3hA2[A:415-473] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

transcarboxylase 5S subunit ; X-RAY DIFFRACTION 2.5Å

e1u5jA2[A:415-473] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

transcarboxylase 5S subunit ; X-RAY DIFFRACTION 2.80Å

e4hnvA8[A:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e3hblD5[D:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.700Å

e3hblB6[B:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.700Å

e3hb9B5[B:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e3bg5B4[B:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e3bg5D4[D:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e4hnvB7[B:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e4hnvD2[D:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e7wtbA5[A:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtbB8[B:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtcA1[A:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtcB1[B:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtdC2[C:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wtdD6[D:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wteC8[C:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e7wteD4[D:985-1029] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase, mitochondrial ; ELECTRON MICROSCOPY

e3bg5C15[C:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ligands: BTI,PYR ; X-RAY DIFFRACTION 2.800Å

e3hb9D16[D:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e4hnuD9[D:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.000Å

e4hntD9[D:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e3ho8B10[B:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e4hntB9[B:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e4hnuB9[B:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.000Å

e3ho8C9[C:863-1026] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e3ho8A10[A:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e3hblC9[C:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ligands: BTI ; X-RAY DIFFRACTION 2.700Å

e3hb9C9[C:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e4hntC3[C:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e4hnuC3[C:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.000Å

e4hnuA4[A:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.000Å

e4hntA2[A:863-1025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.800Å

e8gk8B2[B:831-993] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.676Å

e8gk8C1[C:831-993] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.676Å

e8gk8D1[D:831-993] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.676Å

e5vywC4[C:822-984] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.1Å

e7zyzA2[A:822-1000] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ligands: OAA ; ELECTRON MICROSCOPY

e7zz0A2[A:822-1000] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ELECTRON MICROSCOPY

e7zz1A2[A:822-1000] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ligands: BTN,OAA ; ELECTRON MICROSCOPY

e7zz2A2[A:822-1000] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ligands: PYR ; ELECTRON MICROSCOPY

e3tw6C12[C:959-1003] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE PROTEIN ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e3tw6D12[D:948-992] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE PROTEIN ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e3tw6B12[B:948-992] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE PROTEIN ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e3tw6A17[A:959-1003] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE PROTEIN ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e3tw7A7[A:959-1003] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE PROTEIN ; ligands: CL ; X-RAY DIFFRACTION 3.1Å

e3tw7B2[B:959-1003] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE PROTEIN ; ligands: CL ; X-RAY DIFFRACTION 3.1Å

e4qslG6[G:943-995] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

e4qslC3[C:943-995] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

e5vyzA1[A:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.300Å

e5vyzB3[B:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.300Å

e5vyzD2[D:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.300Å

e5vz0A8[A:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.000Å

e5vz0B1[B:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.000Å

e5vz0D6[D:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.000Å

e5vz0C8[C:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.000Å

e5vyzC7[C:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.300Å

e4qslE6[E:951-995] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

e4qslA3[A:951-995] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

e4qslB6[B:951-995] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

e7zz3A3[A:944-988] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ELECTRON MICROSCOPY

e7zz6D2[D:944-994] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ELECTRON MICROSCOPY

e7zz6A1[A:944-994] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; ELECTRON MICROSCOPY

e4mfdA4[A:838-958] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE ; ligands: OXL ; X-RAY DIFFRACTION 2.55Å

e3hb9A5[A:985-1029] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e3hb9A6[A:863-984] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e3ho8D5[D:863-914,D:947-984] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e3ho8D6[D:985-1026] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 2.900Å

e4jx4A2[A:838-959] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PYRUVATE CARBOXYLASE ; X-RAY DIFFRACTION 2.98Å

e4qslH2[H:829-950] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

e4qslH3[H:951-995] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyruvate carboxylase ; X-RAY DIFFRACTION 3.300Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes