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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

X: a+b domain in Rap/Ran-GAP (Pfam 02145)
H: a+b domain in Rap/Ran-GAP (Pfam 02145)
T: a+b domain in Rap/Ran-GAP (Pfam 02145)
F: Rap-GAP_dimer

PF21022

Representatives:

e1srqA1[A:78-190,A:380-413] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GTPase-activating protein 1 ; ligands: MPD,SO4 ; X-RAY DIFFRACTION 2.90Å

e1srqD2[D:90-131,D:151-186,D:395-409] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GTPase-activating protein 1 ; X-RAY DIFFRACTION 2.90Å

e3brwA3[A:76-188,A:374-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rap1 GTPase-activating protein 1 ; X-RAY DIFFRACTION 3.400Å

e3brwC1[C:78-188,C:374-413] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rap1 GTPase-activating protein 1 ; X-RAY DIFFRACTION 3.400Å

e1srqB1[B:79-189,B:379-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GTPase-activating protein 1 ; X-RAY DIFFRACTION 2.90Å

e1srqC1[C:78-189,C:379-409] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GTPase-activating protein 1 ; ligands: MPD,SO4 ; X-RAY DIFFRACTION 2.90Å

e3brwB1[B:78-188,B:374-414] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rap1 GTPase-activating protein 1 ; X-RAY DIFFRACTION 3.400Å

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes