Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers




Representatives:
e1xttA1[A:2-216]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
Probable uracil phosphoribosyltransferase ; ligands: ACY,U5P ; X-RAY DIFFRACTION 1.80Å
e1bd3A1[A:21-244]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4 ; X-RAY DIFFRACTION 1.93Å
e1o5oA1[A:0-209]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH
Uracil phosphoribosyltransferase ; ligands: SO4,U5P ; X-RAY DIFFRACTION 2.30Å
e1o5oB1[B:1-209] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: SO4,U5P ; X-RAY DIFFRACTION 2.30Å
e1v9sD1[D:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.1Å
e1v9sC1[C:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.1Å
e1v9sB1[B:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.1Å
e1o5oC1[C:0-209] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: SO4,U5P ; X-RAY DIFFRACTION 2.30Å
e1v9sA1[A:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.1Å
e1o5oD1[D:0-209] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: SO4,U5P ; X-RAY DIFFRACTION 2.30Å
e1i5eA1[A:2-209] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: U5P ; X-RAY DIFFRACTION 3.0Å
e1i5eB1[B:2-209] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: U5P ; X-RAY DIFFRACTION 3.0Å
e1bd3C1[C:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4 ; X-RAY DIFFRACTION 1.93Å
e1upuB1[B:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,U5P ; X-RAY DIFFRACTION 2.5Å
e1upfC1[C:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4,URF ; X-RAY DIFFRACTION 2.3Å
e1jlsC1[C:21-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: PO4,URA ; X-RAY DIFFRACTION 2.5Å
e1jlsD1[D:21-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: PO4,URA ; X-RAY DIFFRACTION 2.5Å
e1jlrB1[B:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil Phosphoribosyltransferase ; ligands: GTP,PO4 ; X-RAY DIFFRACTION 2.45Å
e1bd4B1[B:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,URA ; X-RAY DIFFRACTION 2.2Å
e1upfA1[A:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4,URF ; X-RAY DIFFRACTION 2.3Å
e1upfD1[D:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4,URF ; X-RAY DIFFRACTION 2.3Å
e1jlrC1[C:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil Phosphoribosyltransferase ; ligands: GTP,PO4 ; X-RAY DIFFRACTION 2.45Å
e1bd4D1[D:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,URA ; X-RAY DIFFRACTION 2.2Å
e1upfB1[B:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4,URF ; X-RAY DIFFRACTION 2.3Å
e1upuD1[D:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,U5P ; X-RAY DIFFRACTION 2.5Å
e1bd4C1[C:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,URA ; X-RAY DIFFRACTION 2.2Å
e1bd3B1[B:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4 ; X-RAY DIFFRACTION 1.93Å
e1bd4A1[A:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,URA ; X-RAY DIFFRACTION 2.2Å
e1upuA1[A:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,U5P ; X-RAY DIFFRACTION 2.5Å
e1bd3D1[D:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4 ; X-RAY DIFFRACTION 1.93Å
e1jlrA1[A:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil Phosphoribosyltransferase ; ligands: GTP,PO4 ; X-RAY DIFFRACTION 2.45Å
e1jlsA1[A:21-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: PO4,PRP,URA ; X-RAY DIFFRACTION 2.5Å
e1jlrD1[D:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil Phosphoribosyltransferase ; ligands: GTP,PO4 ; X-RAY DIFFRACTION 2.45Å
e1jlsB1[B:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: MG,PO4,PRP,URA ; X-RAY DIFFRACTION 2.5Å
e1upuC1[C:21-244] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: PO4,U5P ; X-RAY DIFFRACTION 2.5Å
e1xtuG1[G:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xtvD1[D:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.6Å
e1xtvF1[F:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.6Å
e1xttB1[B:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: ACY,U5P ; X-RAY DIFFRACTION 1.80Å
e1xtvA1[A:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: U5P ; X-RAY DIFFRACTION 2.6Å
e1xtvC1[C:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: U5P ; X-RAY DIFFRACTION 2.6Å
e1xtvH1[H:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.6Å
e1xtvB1[B:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.6Å
e1xttD1[D:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: ACY,U5P ; X-RAY DIFFRACTION 1.80Å
e1xtuA1[A:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xtuH1[H:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xttC1[C:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: ACY,U5P ; X-RAY DIFFRACTION 1.80Å
e1xtuF1[F:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xtuD1[D:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xtvG1[G:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: U5P ; X-RAY DIFFRACTION 2.6Å
e1xtvE1[E:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: U5P ; X-RAY DIFFRACTION 2.6Å
e1xtuB1[B:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xtuE1[E:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1xtuC1[C:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Probable uracil phosphoribosyltransferase ; ligands: CTP,U5P ; X-RAY DIFFRACTION 2.8Å
e1vstA1[A:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: GTP,PRP ; X-RAY DIFFRACTION 2.8Å
e2e55A1[A:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.15Å
e2ehjA1[A:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.8Å
e3dmpA1[A:0-213] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.500Å
e2e55B1[B:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.15Å
e2e55C1[C:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.15Å
e2e55D1[D:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.15Å
e2ehjB1[B:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.8Å
e2ehjC1[C:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.8Å
e2ehjD1[D:1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
URACIL PHOSPHORIBOSYLTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.8Å
e3dmpB1[B:0-213] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.500Å
e3dmpC1[C:0-213] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.500Å
e3dmpD1[D:0-213] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 2.500Å
e3g6wA1[A:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: GTP,MG,POP,PRP ; X-RAY DIFFRACTION 2.9Å
e3g6wB1[B:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: GTP,HSX,POP,PRP ; X-RAY DIFFRACTION 2.9Å
e3g6wC1[C:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: GTP,HSX,POP ; X-RAY DIFFRACTION 2.9Å
e3g6wD1[D:2-216] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; ligands: GTP,HSX,MG,POP,PRP ; X-RAY DIFFRACTION 2.9Å
e5e38A1[A:-6-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 3.0Å
e5e38B1[B:3-97,B:125-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 3.0Å
e5e38C1[C:0-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 3.0Å
e5e38D1[D:-8-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Uracil phosphoribosyltransferase ; X-RAY DIFFRACTION 3.0Å
e6wn8B1[B:-1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: BDF,CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8A1[A:0-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: BDF,CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8C1[C:-1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: BDF,CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8D1[D:-1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8E1[E:-1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: BDF,CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8F1[F:0-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: BDF,CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8G1[G:0-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8H1[H:0-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: BDF,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8I1[I:-1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: CL,SO4 ; X-RAY DIFFRACTION 2.70Å
e6wn8J1[J:-1-208] Image Pymol Jmol Links: PDB, SCOP, CATH
Uracil phosphoribosyltransferase ; ligands: CL,SO4 ; X-RAY DIFFRACTION 2.70Å

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes