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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_B

PF00136 CL0194

Representatives:

e1q8iA4[A:390-464,A:508-636] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase II ; X-RAY DIFFRACTION 2.00Å

e1ih7A3[A:376-468,A:575-732] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: GMP ; X-RAY DIFFRACTION 2.21Å

e1s5jA3[A:450-561,A:618-718] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE I ; ligands: SO4 ; X-RAY DIFFRACTION 2.4Å

e1tgoA4[A:348-447,A:502-610] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (THERMOSTABLE B DNA POLYMERASE) ; X-RAY DIFFRACTION 2.5Å

e8foc13[1:848-1072] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ELECTRON MICROSCOPY

e8foh12[1:848-1072] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ELECTRON MICROSCOPY

e8ucvA5[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY

e8ucwA6[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY

e8hdzA1[A:523-813] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8foe13[1:814-815,1:859-882,1:903-1054] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ELECTRON MICROSCOPY

e5exrC3[C:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; X-RAY DIFFRACTION 3.600Å

e5exrG6[G:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; X-RAY DIFFRACTION 3.600Å

e1d5aA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (DNA POLYMERASE) ; ligands: SO4 ; X-RAY DIFFRACTION 2.4Å

e2vwjA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: K ; X-RAY DIFFRACTION 2.78Å

e1qqcA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE II ; ligands: SO4 ; X-RAY DIFFRACTION 2.6Å

e2vwkA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.6Å

e4k8xA4[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: 5CY,CL,SO4 ; X-RAY DIFFRACTION 2.28Å

e1wnsA9[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; X-RAY DIFFRACTION 2.800Å

e1qhtA7[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (DNA POLYMERASE) ; X-RAY DIFFRACTION 2.10Å

e1wn7A4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FAMILY B DNA POLYMERASE ; ligands: GOL ; X-RAY DIFFRACTION 2.75Å

e4k8zA4[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: NCO ; X-RAY DIFFRACTION 2.29Å

e4fltA1[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; X-RAY DIFFRACTION 2.9Å

e4flvA4[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.7Å

e4flxA5[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.9Å

e4flzA4[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 3.2Å

e4fm2A6[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.9Å

e4flyA3[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; X-RAY DIFFRACTION 2.3Å

e4flwA3[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.15Å

e4fm0A2[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 3.1Å

e4fluA1[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pyrococcus abyssi B family DNA polymerase ; ligands: GOL ; X-RAY DIFFRACTION 3.1Å

e4fm1A1[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 3.0Å

e3a2fA6[A:348-448,A:503-611] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase ; X-RAY DIFFRACTION 2.67Å

e2jguA5[A:348-448,A:503-611] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; X-RAY DIFFRACTION 2.6Å

e4ahcA6[A:347-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: GOL ; X-RAY DIFFRACTION 2.4Å

e4ahcB5[B:347-447,B:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: GOL ; X-RAY DIFFRACTION 2.4Å

e4ailC3[C:347-447,C:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; X-RAY DIFFRACTION 2.9Å

e3k59A3[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; ligands: DCP,MG ; X-RAY DIFFRACTION 1.92Å

e3maqA5[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; ligands: DGT,MG ; X-RAY DIFFRACTION 2.40Å

e2xhbA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; X-RAY DIFFRACTION 2.72Å

e3k58A1[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; ligands: MG,TTP ; X-RAY DIFFRACTION 2.05Å

e3k57A3[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; ligands: DTP,MG ; X-RAY DIFFRACTION 2.08Å

e3k5nB4[B:372-464,B:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; X-RAY DIFFRACTION 3.15Å

e3k5oA19[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; X-RAY DIFFRACTION 2.20Å

e3k5oB23[B:372-464,B:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; X-RAY DIFFRACTION 2.20Å

e5mdnA4[A:369-467,A:523-621] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e5mdnB3[B:369-467,B:523-621] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e5h12A1[A:348-448,A:503-611] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Deep Vent DNA Polymerase ; X-RAY DIFFRACTION 2.5Å

e3k5mA2[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; ligands: CA,DG3 ; X-RAY DIFFRACTION 2.04Å

e5omqA5[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: DTP,GOL,MG,MN ; X-RAY DIFFRACTION 2.199Å

e5vu8A5[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: 9O7,MG ; X-RAY DIFFRACTION 3.2Å

e5omfA1[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase,DNA polymerase,DNA polymerase ; ligands: DTP,EDO,GOL,MG,MN ; X-RAY DIFFRACTION 2.09Å

e5omvA5[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: DTP,GOL,MG,MN ; X-RAY DIFFRACTION 2.00Å

e5vu5A3[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e5vu6A6[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 3.0Å

e5vu7A2[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: FA2,MG,SO4 ; X-RAY DIFFRACTION 2.72Å

e5vu9A5[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.05Å

e6as7A1[A:834-908,A:965-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DCP,MG ; X-RAY DIFFRACTION 2.950Å

e6q4tA3[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase,DNA polymerase,DNA polymerase ; ligands: EDO,HHZ,MG,MN,NO3 ; X-RAY DIFFRACTION 1.997Å

e3iayA1[A:580-810] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase delta catalytic subunit ; ligands: ACT,CA,DCP ; X-RAY DIFFRACTION 2.0Å

e6is7A6[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å

e6is7B3[B:347-446,B:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å

e6isfA2[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å

e6isfB2[B:347-446,B:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å

e6isgA5[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 3.401Å

e6ishA6[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: B9X,CA ; X-RAY DIFFRACTION 3.30Å

e6isiA1[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: B0U,CA ; X-RAY DIFFRACTION 3.2Å

e6wyaA5[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: ACT,DZ4,EDO,MG ; X-RAY DIFFRACTION 2.41Å

e6wybA3[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.5Å

e7b07A3[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 3.099Å

e7b08A1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: TTP ; X-RAY DIFFRACTION 2.394Å

e7b0fA3[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: TTP ; X-RAY DIFFRACTION 2.797Å

e7b0gA5[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CTP ; X-RAY DIFFRACTION 3.0Å

e7b0hE3[E:348-447,E:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: MG,MN,TTP ; X-RAY DIFFRACTION 3.15Å

e7b0hF1[F:348-447,F:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: MG,MN,TTP ; X-RAY DIFFRACTION 3.15Å

e7b06A4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.34Å

e3k5nA1[A:369-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase II ; X-RAY DIFFRACTION 3.15Å

e7om3A1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase,DNA polymerase,DNA polymerase ; ligands: EDO,PEG ; X-RAY DIFFRACTION 1.91Å

e7ombA1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: DTP,EDO,MG,MN ; X-RAY DIFFRACTION 2.01Å

e7omgA1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,CL,DTP,EDO,MG,MN ; X-RAY DIFFRACTION 2.10Å

e7rsuA1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.1Å

e7oplA2[A:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY

e7u5cC5[C:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY

e7tqwA2[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.216Å

e7n2mA1[A:834-908,A:965-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DCP,MG,ZN ; X-RAY DIFFRACTION 2.9Å

e7rsrA4[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 1.98Å

e7rssA1[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.71Å

e8d0bF2[F:842-1075,F:1266-1267] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY

e8d0kF2[F:842-1075,F:1266-1267] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY

e7uy7E1[E:776-824,E:870-1044] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ELECTRON MICROSCOPY

e8hg1A6[A:524-618,A:680-828] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: MG,TTP ; ELECTRON MICROSCOPY

e8d9dC7[C:837-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DTP,MG ; ELECTRON MICROSCOPY

e8g99A1[A:841-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY

e8g9fA7[A:841-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY

e8d96C1[C:837-908,C:965-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DTP ; ELECTRON MICROSCOPY

e8g9lA5[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY

e8g9nA1[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY

e8g9oA6[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY

e8ucuA3[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY

e1clqA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (DNA POLYMERASE) ; ligands: CA,GDP ; X-RAY DIFFRACTION 2.7Å

e1ig9A3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.6Å

e1q9xA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DOC ; X-RAY DIFFRACTION 2.69Å

e1q9xB3[B:376-467,B:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGP,DOC ; X-RAY DIFFRACTION 2.69Å

e1q9xC3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGP,DOC ; X-RAY DIFFRACTION 2.69Å

e1q9xD3[D:376-467,D:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGP,DOC ; X-RAY DIFFRACTION 2.69Å

e1q9yA3[A:379-470,A:577-734] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.80Å

e1wafA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: GMP ; X-RAY DIFFRACTION 3.2Å

e1wafB3[B:376-467,B:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: GMP ; X-RAY DIFFRACTION 3.2Å

e1wajA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: 5GP ; X-RAY DIFFRACTION 2.8Å

e2dy4A3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e2dy4B3[B:376-467,B:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e2dy4C3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e2dy4D3[D:376-467,D:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e2oyqC3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: N5P ; X-RAY DIFFRACTION 2.860Å

e2ozmA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: MG,N5P ; X-RAY DIFFRACTION 2.86Å

e2ozsA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: DTP,MG ; X-RAY DIFFRACTION 2.750Å

e2p5gA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.800Å

e2p5gC3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.800Å

e2p5gD3[D:376-467,D:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.800Å

e3cq8A3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,GOL,NA,TTP ; X-RAY DIFFRACTION 2.5Å

e4i9qB2[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,NA,XG4 ; X-RAY DIFFRACTION 2.3Å

e4khnB2[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,SO4,XG4 ; X-RAY DIFFRACTION 2.55Å

e3rmcB8[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 3.00Å

e3rmcA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 3.00Å

e3rmdB8[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: DTP ; X-RAY DIFFRACTION 2.980Å

e3sq2A8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.096Å

e3sq4A8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.23Å

e3rmdA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.980Å

e2p5oA6[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e2p5oC6[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e3rmaC8[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.84Å

e3rmdD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.980Å

e3rmcD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 3.00Å

e3rmaD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.84Å

e3rmbD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e2oyqD6[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.860Å

e2p5oB2[B:376-468,B:575-734] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e3kd1E10[E:376-468,E:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.66Å

e4m3rA10[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: ATP,CA ; X-RAY DIFFRACTION 2.07Å

e4j2aA10[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.80Å

e2atqA5[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: GDP ; X-RAY DIFFRACTION 3.10Å

e4khnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,GOL,NA,SO4,XG4 ; X-RAY DIFFRACTION 2.55Å

e4i9lA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CL,GMP ; X-RAY DIFFRACTION 2.6Å

e4khqA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DUP,NA ; X-RAY DIFFRACTION 2.186Å

e4khsA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,CL,NA,TTP ; X-RAY DIFFRACTION 2.100Å

e4khuA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.05Å

e4khwA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.371Å

e4khyA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.25Å

e4ki4A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.45Å

e4ki6A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.55Å

e2dtuB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.370Å

e3uiqA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DUP ; X-RAY DIFFRACTION 1.879Å

e2dtuA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.370Å

e3cfoA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase ; ligands: GMP,SO4 ; X-RAY DIFFRACTION 2.6Å

e3cfrA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,CL,TTP ; X-RAY DIFFRACTION 2.4Å

e3l8bA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.15Å

e3l8bB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.15Å

e3naeA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.0Å

e3ndkA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.0Å

e3ne6A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.0Å

e3ngiA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.89Å

e3nciA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.79Å

e3rmbB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e3rmbC7[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e3rmdC7[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: DTP ; X-RAY DIFFRACTION 2.980Å

e3qepA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.80Å

e3s9hA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,DUP ; X-RAY DIFFRACTION 1.95Å

e3scxA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,DUP ; X-RAY DIFFRACTION 2.35Å

e3si6A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: DUP,MG ; X-RAY DIFFRACTION 1.85Å

e3sq1A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DUP ; X-RAY DIFFRACTION 1.82Å

e3tabA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e3tabB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.8Å

e3taeB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.7Å

e3tafA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA polymerase ; X-RAY DIFFRACTION 3.0Å

e3tafB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA polymerase ; X-RAY DIFFRACTION 3.0Å

e3tagA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA polymerase ; X-RAY DIFFRACTION 2.95Å

e3tagC7[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA polymerase ; X-RAY DIFFRACTION 2.95Å

e4dtjA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.90Å

e3qevA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.77Å

e3qexA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.73Å

e4dtmA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.95Å

e4fk4A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.9Å

e3qewA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 1.84Å

e4fjlA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.87Å

e4fj9A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.97Å

e4fjkA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2Å

e3qesA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.98Å

e4fj7A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.9Å

e4dtsA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.96Å

e4fj5A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.05Å

e4du3A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.02Å

e4fk0A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.18Å

e4fjhA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 2.11Å

e4fjnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.98Å

e4fk2A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.98Å

e3rmaA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.84Å

e3qnnA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.92Å

e4du1A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.15Å

e4dtnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 1.96Å

e3lzjA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: CA,CTP ; X-RAY DIFFRACTION 2.05Å

e3nhgA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.5Å

e3rwuA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; ligands: ATP,CA ; X-RAY DIFFRACTION 2.33Å

e3rmaB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.84Å

e3rmbA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.650Å

e3snnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE ; ligands: DCP,MG ; X-RAY DIFFRACTION 2.0Å

Next

e4q5vA2[A:834-908,A:965-1078] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase alpha catalytic subunit ; ligands: 2ZE ; X-RAY DIFFRACTION 2.5Å

e2gv9B2[B:701-769,B:829-956] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.675Å

e5n2eA4[A:524-618,A:680-828] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase ; X-RAY DIFFRACTION 2.74Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: ClpS-like

contains a HTH motif

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes