Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
Representatives:
e1q8iA4[A:390-464,A:508-636] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase II ; X-RAY DIFFRACTION 2.00Å
e1ih7A3[A:376-468,A:575-732] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: GMP ; X-RAY DIFFRACTION 2.21Å
e1s5jA3[A:450-561,A:618-718] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE I ; ligands: SO4 ; X-RAY DIFFRACTION 2.4Å
e1tgoA4[A:348-447,A:502-610] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (THERMOSTABLE B DNA POLYMERASE) ; X-RAY DIFFRACTION 2.5Å
e8foc13[1:848-1072] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ELECTRON MICROSCOPY
e8foh12[1:848-1072] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ELECTRON MICROSCOPY
e8ucvA5[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY
e8ucwA6[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY
e8hdzA1[A:523-813] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
e8foe13[1:814-815,1:859-882,1:903-1054] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ELECTRON MICROSCOPY
e5exrC3[C:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; X-RAY DIFFRACTION 3.600Å
e5exrG6[G:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; X-RAY DIFFRACTION 3.600Å
e1d5aA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (DNA POLYMERASE) ; ligands: SO4 ; X-RAY DIFFRACTION 2.4Å
e2vwjA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: K ; X-RAY DIFFRACTION 2.78Å
e1qqcA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE II ; ligands: SO4 ; X-RAY DIFFRACTION 2.6Å
e2vwkA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.6Å
e4k8xA4[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: 5CY,CL,SO4 ; X-RAY DIFFRACTION 2.28Å
e1wnsA9[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; X-RAY DIFFRACTION 2.800Å
e1qhtA7[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (DNA POLYMERASE) ; X-RAY DIFFRACTION 2.10Å
e1wn7A4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FAMILY B DNA POLYMERASE ; ligands: GOL ; X-RAY DIFFRACTION 2.75Å
e4k8zA4[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: NCO ; X-RAY DIFFRACTION 2.29Å
e4fltA1[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; X-RAY DIFFRACTION 2.9Å
e4flvA4[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.7Å
e4flxA5[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.9Å
e4flzA4[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 3.2Å
e4fm2A6[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.9Å
e4flyA3[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; X-RAY DIFFRACTION 2.3Å
e4flwA3[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 2.15Å
e4fm0A2[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 3.1Å
e4fluA1[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Pyrococcus abyssi B family DNA polymerase ; ligands: GOL ; X-RAY DIFFRACTION 3.1Å
e4fm1A1[A:348-448,A:503-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase 1 ; ligands: GOL ; X-RAY DIFFRACTION 3.0Å
e3a2fA6[A:348-448,A:503-611] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase ; X-RAY DIFFRACTION 2.67Å
e2jguA5[A:348-448,A:503-611] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; X-RAY DIFFRACTION 2.6Å
e4ahcA6[A:347-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: GOL ; X-RAY DIFFRACTION 2.4Å
e4ahcB5[B:347-447,B:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: GOL ; X-RAY DIFFRACTION 2.4Å
e4ailC3[C:347-447,C:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; X-RAY DIFFRACTION 2.9Å
e3k59A3[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; ligands: DCP,MG ; X-RAY DIFFRACTION 1.92Å
e3maqA5[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; ligands: DGT,MG ; X-RAY DIFFRACTION 2.40Å
e2xhbA4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; X-RAY DIFFRACTION 2.72Å
e3k58A1[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; ligands: MG,TTP ; X-RAY DIFFRACTION 2.05Å
e3k57A3[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; ligands: DTP,MG ; X-RAY DIFFRACTION 2.08Å
e3k5nB4[B:372-464,B:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; X-RAY DIFFRACTION 3.15Å
e3k5oA19[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; X-RAY DIFFRACTION 2.20Å
e3k5oB23[B:372-464,B:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; X-RAY DIFFRACTION 2.20Å
e5mdnA4[A:369-467,A:523-621] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e5mdnB3[B:369-467,B:523-621] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e5h12A1[A:348-448,A:503-611] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Deep Vent DNA Polymerase ; X-RAY DIFFRACTION 2.5Å
e3k5mA2[A:372-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; ligands: CA,DG3 ; X-RAY DIFFRACTION 2.04Å
e5omqA5[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: DTP,GOL,MG,MN ; X-RAY DIFFRACTION 2.199Å
e5vu8A5[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: 9O7,MG ; X-RAY DIFFRACTION 3.2Å
e5omfA1[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase,DNA polymerase,DNA polymerase ; ligands: DTP,EDO,GOL,MG,MN ; X-RAY DIFFRACTION 2.09Å
e5omvA5[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: DTP,GOL,MG,MN ; X-RAY DIFFRACTION 2.00Å
e5vu5A3[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e5vu6A6[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 3.0Å
e5vu7A2[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: FA2,MG,SO4 ; X-RAY DIFFRACTION 2.72Å
e5vu9A5[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.05Å
e6as7A1[A:834-908,A:965-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DCP,MG ; X-RAY DIFFRACTION 2.950Å
e6q4tA3[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase,DNA polymerase,DNA polymerase ; ligands: EDO,HHZ,MG,MN,NO3 ; X-RAY DIFFRACTION 1.997Å
e3iayA1[A:580-810] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase delta catalytic subunit ; ligands: ACT,CA,DCP ; X-RAY DIFFRACTION 2.0Å
e6is7A6[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å
e6is7B3[B:347-446,B:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å
e6isfA2[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å
e6isfB2[B:347-446,B:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 2.8Å
e6isgA5[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 3.401Å
e6ishA6[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: B9X,CA ; X-RAY DIFFRACTION 3.30Å
e6isiA1[A:347-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: B0U,CA ; X-RAY DIFFRACTION 3.2Å
e6wyaA5[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: ACT,DZ4,EDO,MG ; X-RAY DIFFRACTION 2.41Å
e6wybA3[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.5Å
e7b07A3[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA ; X-RAY DIFFRACTION 3.099Å
e7b08A1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: TTP ; X-RAY DIFFRACTION 2.394Å
e7b0fA3[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: TTP ; X-RAY DIFFRACTION 2.797Å
e7b0gA5[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CTP ; X-RAY DIFFRACTION 3.0Å
e7b0hE3[E:348-447,E:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: MG,MN,TTP ; X-RAY DIFFRACTION 3.15Å
e7b0hF1[F:348-447,F:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: MG,MN,TTP ; X-RAY DIFFRACTION 3.15Å
e7b06A4[A:348-446,A:501-609] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.34Å
e3k5nA1[A:369-464,A:508-636] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase II ; X-RAY DIFFRACTION 3.15Å
e7om3A1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase,DNA polymerase,DNA polymerase ; ligands: EDO,PEG ; X-RAY DIFFRACTION 1.91Å
e7ombA1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: DTP,EDO,MG,MN ; X-RAY DIFFRACTION 2.01Å
e7omgA1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,CL,DTP,EDO,MG,MN ; X-RAY DIFFRACTION 2.10Å
e7rsuA1[A:348-447,A:502-610] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.1Å
e7oplA2[A:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY
e7u5cC5[C:842-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY
e7tqwA2[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.216Å
e7n2mA1[A:834-908,A:965-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DCP,MG,ZN ; X-RAY DIFFRACTION 2.9Å
e7rsrA4[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 1.98Å
e7rssA1[A:346-434,A:486-590] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.71Å
e8d0bF2[F:842-1075,F:1266-1267] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY
e8d0kF2[F:842-1075,F:1266-1267] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY
e7uy7E1[E:776-824,E:870-1044] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ELECTRON MICROSCOPY
e8hg1A6[A:524-618,A:680-828] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: MG,TTP ; ELECTRON MICROSCOPY
e8d9dC7[C:837-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DTP,MG ; ELECTRON MICROSCOPY
e8g99A1[A:841-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY
e8g9fA7[A:841-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ELECTRON MICROSCOPY
e8d96C1[C:837-908,C:965-1078] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DTP ; ELECTRON MICROSCOPY
e8g9lA5[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY
e8g9nA1[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY
e8g9oA6[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY
e8ucuA3[A:836-904,A:961-1074] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: DGT,MG ; ELECTRON MICROSCOPY
e1clqA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN (DNA POLYMERASE) ; ligands: CA,GDP ; X-RAY DIFFRACTION 2.7Å
e1ig9A3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.6Å
e1q9xA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DOC ; X-RAY DIFFRACTION 2.69Å
e1q9xB3[B:376-467,B:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGP,DOC ; X-RAY DIFFRACTION 2.69Å
e1q9xC3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGP,DOC ; X-RAY DIFFRACTION 2.69Å
e1q9xD3[D:376-467,D:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGP,DOC ; X-RAY DIFFRACTION 2.69Å
e1q9yA3[A:379-470,A:577-734] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.80Å
e1wafA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: GMP ; X-RAY DIFFRACTION 3.2Å
e1wafB3[B:376-467,B:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: GMP ; X-RAY DIFFRACTION 3.2Å
e1wajA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: 5GP ; X-RAY DIFFRACTION 2.8Å
e2dy4A3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e2dy4B3[B:376-467,B:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e2dy4C3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e2dy4D3[D:376-467,D:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e2oyqC3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: N5P ; X-RAY DIFFRACTION 2.860Å
e2ozmA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: MG,N5P ; X-RAY DIFFRACTION 2.86Å
e2ozsA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: DTP,MG ; X-RAY DIFFRACTION 2.750Å
e2p5gA3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.800Å
e2p5gC3[C:376-467,C:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.800Å
e2p5gD3[D:376-467,D:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.800Å
e3cq8A3[A:376-467,A:574-731] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,GOL,NA,TTP ; X-RAY DIFFRACTION 2.5Å
e4i9qB2[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,NA,XG4 ; X-RAY DIFFRACTION 2.3Å
e4khnB2[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,SO4,XG4 ; X-RAY DIFFRACTION 2.55Å
e3rmcB8[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 3.00Å
e3rmcA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 3.00Å
e3rmdB8[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: DTP ; X-RAY DIFFRACTION 2.980Å
e3sq2A8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.096Å
e3sq4A8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.23Å
e3rmdA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.980Å
e2p5oA6[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e2p5oC6[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e3rmaC8[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.84Å
e3rmdD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.980Å
e3rmcD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 3.00Å
e3rmaD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.84Å
e3rmbD8[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e2oyqD6[D:376-468,D:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.860Å
e2p5oB2[B:376-468,B:575-734] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e3kd1E10[E:376-468,E:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.66Å
e4m3rA10[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: ATP,CA ; X-RAY DIFFRACTION 2.07Å
e4j2aA10[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.80Å
e2atqA5[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: GDP ; X-RAY DIFFRACTION 3.10Å
e4khnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,GOL,NA,SO4,XG4 ; X-RAY DIFFRACTION 2.55Å
e4i9lA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CL,GMP ; X-RAY DIFFRACTION 2.6Å
e4khqA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DUP,NA ; X-RAY DIFFRACTION 2.186Å
e4khsA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,CL,NA,TTP ; X-RAY DIFFRACTION 2.100Å
e4khuA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.05Å
e4khwA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.371Å
e4khyA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.25Å
e4ki4A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,NA,TTP ; X-RAY DIFFRACTION 2.45Å
e4ki6A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.55Å
e2dtuB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.370Å
e3uiqA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DUP ; X-RAY DIFFRACTION 1.879Å
e2dtuA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.370Å
e3cfoA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase ; ligands: GMP,SO4 ; X-RAY DIFFRACTION 2.6Å
e3cfrA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,CL,TTP ; X-RAY DIFFRACTION 2.4Å
e3l8bA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.15Å
e3l8bB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.15Å
e3naeA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.0Å
e3ndkA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.0Å
e3ne6A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.0Å
e3ngiA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.89Å
e3nciA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.79Å
e3rmbB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e3rmbC7[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e3rmdC7[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: DTP ; X-RAY DIFFRACTION 2.980Å
e3qepA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.80Å
e3s9hA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,DUP ; X-RAY DIFFRACTION 1.95Å
e3scxA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,DUP ; X-RAY DIFFRACTION 2.35Å
e3si6A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: DUP,MG ; X-RAY DIFFRACTION 1.85Å
e3sq1A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DUP ; X-RAY DIFFRACTION 1.82Å
e3tabA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e3tabB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.8Å
e3taeB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.7Å
e3tafA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA polymerase ; X-RAY DIFFRACTION 3.0Å
e3tafB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA polymerase ; X-RAY DIFFRACTION 3.0Å
e3tagA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA polymerase ; X-RAY DIFFRACTION 2.95Å
e3tagC7[C:376-468,C:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA polymerase ; X-RAY DIFFRACTION 2.95Å
e4dtjA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.90Å
e3qevA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.77Å
e3qexA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.73Å
e4dtmA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.95Å
e4fk4A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.9Å
e3qewA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 1.84Å
e4fjlA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.87Å
e4fj9A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.97Å
e4fjkA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2Å
e3qesA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.98Å
e4fj7A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.9Å
e4dtsA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 1.96Å
e4fj5A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.05Å
e4du3A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.02Å
e4fk0A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DCP ; X-RAY DIFFRACTION 2.18Å
e4fjhA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 2.11Å
e4fjnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.98Å
e4fk2A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,TTP ; X-RAY DIFFRACTION 1.98Å
e3rmaA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.84Å
e3qnnA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.92Å
e4du1A7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 2.15Å
e4dtnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,DTP ; X-RAY DIFFRACTION 1.96Å
e3lzjA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: CA,CTP ; X-RAY DIFFRACTION 2.05Å
e3nhgA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: CA,TTP ; X-RAY DIFFRACTION 2.5Å
e3rwuA8[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; ligands: ATP,CA ; X-RAY DIFFRACTION 2.33Å
e3rmaB7[B:376-468,B:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.84Å
e3rmbA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase ; X-RAY DIFFRACTION 2.650Å
e3snnA7[A:376-468,A:575-732] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE ; ligands: DCP,MG ; X-RAY DIFFRACTION 2.0Å
Nexte4q5vA2[A:834-908,A:965-1078] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase alpha catalytic subunit ; ligands: 2ZE ; X-RAY DIFFRACTION 2.5Å
Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
looks like an elaborated ferredoxin
contains a HTH motif
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes