Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices




Representatives:
e3jyhA2[A:197-335]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH
DIPEPTIDYL-PEPTIDASE 2 ; ligands: NAG ; X-RAY DIFFRACTION 2.19Å
e3n2zB1[B:217-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lysosomal Pro-X carboxypeptidase ; ligands: NAG ; X-RAY DIFFRACTION 2.79Å
e3jyhB2[B:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DIPEPTIDYL-PEPTIDASE 2 ; ligands: NAG ; X-RAY DIFFRACTION 2.19Å
e3jyhC2[C:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DIPEPTIDYL-PEPTIDASE 2 ; ligands: NAG ; X-RAY DIFFRACTION 2.19Å
e3jyhD2[D:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DIPEPTIDYL-PEPTIDASE 2 ; ligands: NAG ; X-RAY DIFFRACTION 2.19Å
e3n0tA2[A:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
Dipeptidyl peptidase 2 ; ligands: OPY ; X-RAY DIFFRACTION 2.450Å
e3n0tB2[B:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
Dipeptidyl peptidase 2 ; ligands: OPY ; X-RAY DIFFRACTION 2.450Å
e3n0tC2[C:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
Dipeptidyl peptidase 2 ; ligands: OPY ; X-RAY DIFFRACTION 2.450Å
e3n0tD2[D:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH
Dipeptidyl peptidase 2 ; ligands: OPY ; X-RAY DIFFRACTION 2.450Å
e4ebbA2[A:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DIPEPTIDYL PEPTIDASE 2 ; ligands: NAG,ZN ; X-RAY DIFFRACTION 2.0Å
e4ebbB2[B:197-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DIPEPTIDYL PEPTIDASE 2 ; ligands: NAG ; X-RAY DIFFRACTION 2.0Å

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes